classes.

Add an alias for a matrix map.
Create a templated method in the MeshModel and IOMesh to automatically
cast the underlying mesh.

Create an interpolate() method in the VegaVolumetricMesh class to
interpolate surface of the underlying volumetric mesh with an external
surface mesh and clean up the interface.

Create a computeGravity() method in the VegaVolumetricMesh class
to compute gravity forces.

Refactor getVelocity() method in DeformableSceneObject and add a
variable to hold the gravity vector.

Refactor SceneObject. Add SceneModelRenderDelegate render delegate to
take care of renderign operations for this model. Create visual,
physics and collision model variables.

Remove render delegates from the StaticSceneObject, this is now handled
by it base class.

Add storage for the gravity force in VegaFEMDeformableSceneObject and
initialized properly. Compute internal force by multiplying K*positions
instead of calling the vega function.

Refactor DefaultSimulator, VegaFEMModelSimulator. This class will be
marked obsolete soon.

This will be the main render delegate since only models are allowed to
be render and this one covers most cases.

in the Scene objects.

DefaultSimulator.

* Remove custom renderers
* Remove local storage for vertices
* Documenting

Small format changes all over the place.

Use the model from SceneObject to laod meshes.

and their tests. Streamline and refactor
time integrators and their tests.

initialized from Vega matrices. The ode rhs
now considers damping only if the coefficients are
positive, non zero. It also accumulates contact forces
if any. The updateAttachedMesh in the VegaVolumetricMesh
class now takes an Eigen vector to do the update.

to just NewtonMethod. Update the solve routine
so it always goes into the armijo loop, subsequent
function norms are computed there. If the user wants
to disable the armijo updated then it should set the
armijoMax in the base class. The armijo function now
takes an extra parameter, the old function evaluation
norm.

in favor of their own "GenerateCompressedRowMajorFormat" routine.

Refactor ObjectSimulator.

classes. Also create a SimulationManager in charge of
running the simulation.

file and add forward declarations.

module.

Alexis Girault authored 9 years ago and Kitware Robot committed 9 years ago

a41a8090 ENH: Update CameraController architecture
7b9b5153 BUG: allow DisableMouseInteraction in LaparoscopicCamera

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !70

- Migration of the camera update by external device
from VTKViewer to LaparoscopicCameraController.
- Removal of obsolete cameraConfigurationData struct
- Cleaning of unused variables and of style
- Simplification of the cameraController feature
in the LaparoscopicCamera example.

In the LaparoscopicCamera example the mouse interaction
was supposed to be disabled, but by setting the new
interactor style after the viewer initialization, the
observers rules on the vtkViewer interactor were
overridden. Placing the interactorStyle beforehand
resolves the issue.

In the future it would be convenient to have wrapped
functions in IMSTK to make changes to the interactor
without the need to go through VTK.

Alexis Girault authored 9 years ago and Kitware Robot committed 9 years ago

d994c08e COMP: Cleaning some unused cmake files.
9ef7e318 ENH: Remove VTK includes from submodules' CMakeLists.txt
f6ada232 COMP: Fix compilation issues for external projects

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Reviewed-by: Alexis Girault <alexis.girault@kitware.com>
Merge-request: !69

Also, adding ThreadPool to the configuration file.

- Also replace GL/glew by vtk_glew in Core/RenderDetail
- Remove empty first line in those

- Add missing export targets (Solvers, TimeIntegrators, VTKRendering)
- Remove obsolete GLM from SimMedTKConfig.cmake
- Include VRPN libraries in SimMedTKConfig.cmake
- Include VTK in SimMedTKCongig.cmake

Ricardo Ortiz authored 9 years ago and Kitware Robot committed 9 years ago

56fb5769 ENH: Time Integrators module.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Reviewed-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Merge-request: !63

This module implements forward and backward Euler methods.

ENH: Add unit tests

ENH: Implement Newton's method. Used in the backward Euler method.

Add test for backward euler.

Fix MacOSX compilation error.

BUG: Make sure row major sparse containers are used
for all matrix computations.

Clean up interfaces, fix linking errors and transfer implementations
to cpp files.

Documents methods and variables. Clean solvers test.

Adding more documentation. Clean solver tests and interfaces.

Fix discrepancies in iterative solvers errors. Add more documentation.

Sean Radigan authored 9 years ago and Kitware Robot committed 9 years ago

4a2b2e56 COMP: Suppress Clang override warnings from VTK

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Merge-request: !66

Sean Radigan authored 9 years ago and Kitware Robot committed 9 years ago

f7d0354c BUG: Fixed examples to properly shutdown

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Merge-request: !65

VRPNDeviceServer did not properly setting framework termination flags
VRPNDeviceServer was also wrapping vrpn_Connection in a shared_ptr,
this was causing a double delete because vrpn_ConnectionManager
cleans up after connections made with vrpn_create_server_connection()

BUG: Enable solver module.

Add namespace to matrices.

Closes #61

See merge request !64

Add namespace to matrices.

Closes #61

Solvers module

This solvers module contains interfaces to solve linear and non-linear systems of equations. 

See merge request !62

Add a flag to computer the residual for iterative methods
changes to SOR and Gauss-Seidel methods

Conflicts:
	Solvers/BackwardSOR.h
	Solvers/ForwardGaussSeidel.cpp