from SimMedTK to iMSTK.

Modify the license notice in each file.
Add LICENSE file.

from SimMedTK to iMSTK.

Modify the license notice in each file.
Add LICENSE file.

Implement missing methods and logic.

Revert some changes and make it build, run FEMSimulator example

CollisionContext/CMakeLists.txt was contributed by Sreekanth.

classes. Also create a SimulationManager in charge of
running the simulation.

Also, adding ThreadPool to the configuration file.

- Add missing export targets (Solvers, TimeIntegrators, VTKRendering)
- Remove obsolete GLM from SimMedTKConfig.cmake
- Include VRPN libraries in SimMedTKConfig.cmake
- Include VTK in SimMedTKCongig.cmake

This module implements forward and backward Euler methods.

ENH: Add unit tests

ENH: Implement Newton's method. Used in the backward Euler method.

Add test for backward euler.

Fix MacOSX compilation error.

BUG: Make sure row major sparse containers are used
for all matrix computations.

Clean up interfaces, fix linking errors and transfer implementations
to cpp files.

Documents methods and variables. Clean solvers test.

Adding more documentation. Clean solver tests and interfaces.

Fix discrepancies in iterative solvers errors. Add more documentation.

Add namespace to matrices.

Closes #61

Removing RenderDelegates, OpenGLRenderer, OpenGLViewer

Add cmake logic so Assimp zlib can be found
in release mode.

Work on Integrate ToolCoupler with ObjectSimulartor
to implement haptics rendering.

Also enable and test force feedback.

to couple devices and models.

Add VRPN generic server device.

generalized a bit. For instance the controller module can be
generalized to use any device and not just the phantom.

SimMedTK is using VRPN compiling properly.
Most of the VRPN stuff is compiling, but linking has some issues.
Somehow VRPN is adding libs that doesn't exist to the VS project for
linking. WIP Adds basic reading functionality from a networked
phantom omni.  Some misc changes happened in this commitsuch as some
namespace changes and framework start up and shutdown flow. Added a
vrpnPhantomController.  Abstracted out renderCube a little because
it gets used in other places. Fixed a few compiler warnings

did not test if it compiles on anything.
Fix VRPN external build for linux.

Many other cmake improvements.

Fix GLEW/GLU dependency mess.

Set build configuration variables and pass down to to superbuild
external projects.

1. Removing GLEW external project. Glew is now
built with vtk, in order to use it just include
the vtk use file and add the vtkglew library
to the target link directive.

2. BUILD_SHARED_LIBS is now forced to be OFF for
Windows MSVC builds.

Build external shared libs in order to avoid linking issues in windows.

Automating the way renderers are loaded.

Fix broken tests.
The renderCube example is broken now. Submitting patch soon.

Revert to build command in the Superbuild so that parallel
build work again.

If `SimMedTK_VTK_DIR` is defined, its value is used for `VTK_DIR`.
Otherwise, we ask CMake to find VTK and pass whatever it returns
from the superbuild to the SimMedTK build.

until they are refactored.

This data mapper allows you to map external data into the
vtkDataArray.
This in turn allows you to interface with vtk without
repacking the simulatordata.

Clean up and implement a pimpl VtkRenderer to hide
redering implementation.

Replace core::StdVector3d with std::vector<core::Vec3d>

because eigen 3d vector array is aligned
by default so no special allocator is needed. See core::StdVector3d
for more details.

and naming of the export targets.
Issue #27

Also renmamed many unseen sm* class names.

Add _USE_MATH_DEFINES to the windows compile definitions.

This is a large commit because clang (on OS X) does not allow
libraries with missing dependencies and adding them would
introduce cyclic dependencies between libraries (which CMake
and sanity both forbid).

The following changes are included:
+ Merge smUtilities into smCore since they were heavily interdependent.
+ Merge smShaders into smRendering since they were heavily interdependent.
+ Omit the unused smMotionTransformer class.
+ Remove pipes from smSDK based on Ricardo's advice.
+ Add a header-only factory class (templated on the common base class
  for objects in the collection) that uses dynamic library
  initialization to register subclasses.
+ Split smViewer into a base class (smViewerBase) in smCore and
  OpenGL-specific methods (smViewer in smRendering).
  Use the factory above to register the smViewer when linking to
  smRendering. If not linking to rendering, the factory returns
  a null shared pointer when smSDK asks for a view.
+ Moves smGLUtils into smRendering since it is dependent on OpenGL,
  unlike the rest of the classes that were moved into smCore.
+ Move `draw()` implementations out of individual classes
  and into a new smRenderDelegates library.
  This library uses the new factory pattern, so simply linking
  to smRenderDelegates should be enough to make delegates
  available to applications that wish to do rendering.
+ Run a (the?) viewer in the main thread.
  On OS X, only the main thread can run user interface code
  because Cocoa events are only delivered to the main thread and
  Cocoa is not threadsafe.
+ Remove the broken and unused smCollisionManager.

There are rendering issues after this commit, but they apparently
exist prior to the commit as well.

Both Doxygen (ninja/make target `doc`)
and Sphinx (ninja/make target `doc-userguide`)
documentation are built.
The Doxygen documentation is put in `documentation/reference/SimMedTK`
while the Sphinx documentation is put in `documentation/user`.

This should close issue #3. (Actually finishing writing the
documentation should probably be several separate issues covering more
specific parts of the documentation.)

Added exports for smRenderingOculus.  Fixed the Oculus examples so they compile.  Also found a stray GLUT reference and removed it.