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ENH: Added CLI support for Subject hierarchy

Closed Csaba Pinter requested to merge github/fork/cpinter/subject-hierarchy-cli into master
  1. Moved vtkMRMLSubjectHierarchyNode and constants to MRML core. Moved transform related functions to SH logic from the node
  2. Added reference argument support for Volume (image) and Model (geometry) nodes when outputs of a CLI module
  3. Updated most CLI modules to support references for subject hierarchies

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