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First pass at building documentation.

David Thompson requested to merge dcthomp/simmedtk:add-user-guide into master

Both Doxygen (ninja/make target doc) and Sphinx (ninja/make target doc-userguide) documentation are built. The Doxygen documentation is put in documentation/reference/SimMedTK while the Sphinx documentation is put in documentation/user.

This should close issue #3 (closed). (Actually finishing writing the documentation should probably be several separate issues covering more specific parts of the documentation.)

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