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REFAC: Accelerations cleared at the end of pbd, option to not use partitioning in config

Andrew Wilson requested to merge andrew.wilson/iMSTK:MinorPbdChanges into master
  • Accelerations should be cleared at the end of pbd to ensure accelerations don't accumulate when used externally.
  • Option in pbd config to not do partioning which can sometimes be faster.
  • Subtle efficiency change

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