Well at least VanderWaal scaling. As with color, most of the modes
are not fleshed out yet.

None of the rest of Domains/Chemistry is in a kit, and its inclusion
into the OpenGL kit causes cyclic dependencies between IO, Rendering
and itself.

bunch of missing override qualifiers on destructors

Kitware Robot authored 5 years ago and Ben Boeckel committed 5 years ago

Run the `clang-format.bash` script to update all our C and C++ code to a
new style defined by `.clang-format`.  Use `clang-format` version 8.0.

* If you reached this commit for a line in `git blame`, re-run the blame
  operation starting at the parent of this commit to see older history
  for the content.

* See the parent commit for instructions to rebase a change across this
  style transition commit.

Also ignore some files which should not be formatted.

Kitware Robot authored 5 years ago and Ben Boeckel committed 5 years ago

The automatic formatting for this didn't handle the case where the group
was right against another line. Move the group ends to where they
belong.

Kitware Robot authored 5 years ago and Ben Boeckel committed 5 years ago

clang-format treats them as declarations and formats accordingly.

Kitware Robot authored 5 years ago and Ben Boeckel committed 5 years ago

clang-format takes the lack of a semicolon as if it were an attribute or
some other "chainable" call leading to bogus indentation. By using
semicolons on all macro calls, the formatting comes out the way it
should.

Kitware Robot authored 5 years ago and Ben Boeckel committed 5 years ago

Includes a few changes related to extraneous whitespace fixes and
deduplication of headers as well.

See the vtkCellArray.h class docs for details.

The function is not thread-safe and we have better tools in vtksys anyways (namely SystemTools::Split).

* vtkShaderProperty stored in vtkVolume to allow sharing between mappers
* Refactored vtkUniforms with more generic code
* Added getter functions to vtkUniforms for IO purposes

This reverts commit 075f7997, reversing
changes made to a7add686.

This change was causing issues in ParaView and since ParaView is in its
release cycle, reverting it is easier than fixing it right now.

See !5345 for discussion.

Merge-request: !5096

  * use clang-format (with ParaView config)

  * allow unique color for atoms
  * fix coloring from 3 components array
  * add Map Scalars option

int Allocate(vtkIdType
->
vtkTypeBool Allocate(vtkIdType

int +(.*)::Allocate\(vtkIdType
->
vtkTypeBool \1::Allocate\(vtkIdType

GCC is getting smarter and detects that we're not copying the NUL
terminator over.

There are two approaches to fixing the warning:

  - where code is already a bit more complicated, just use `std::string`
    instead of C-style string manipulations; and
  - where we were doing `strncpy(dest, src, strlen(src))`, just use
    `strcpy` instead since the destination sizes are made based on the
    size of `src` anyways.

When the 2nd line of each timestep block contains a title, it is searched for a time keyword.
If not found, no timestep value was added to the list of timesteps, making it crash when setting
the TIME_STEPS() key

Significant rework of the hardware picking code.

Previously each mapper had to make sure that the rendered
colors were correct for point/cell etc ID during hardware picking
and this required large datastructures and texture uploads
to the GPU on each pick.

Now it collects the color buffers and gives the mappers a chance to
update them. This allows us to use gl_VertexId and gl_PrimitiveId
directly in the shader and then if picked, allow the mapper to
adjust the color buffer as needed. This allows us to avoid
rebuilding the VBO and textures each time and avoids the memory
footprint related to that.

 * introduce vtkMoleculeToLinesFilter
 ** Create polydata with atom == point, bond == line cell. Copy data.

 * Fix AtomBall and BondStick conversion:
 ** set array name for bond orders and atomic numbers
 ** fix allocated size

 * Introduce vtkAppendMolecule filter to append input molecules into one (with atomData and bondData)
 * Since vtkMolecule is in Common/DataModel, move vtkMoleculeAlgorithm to Common/ExecutionModel

Kitware Robot authored 6 years ago and Brad King committed 6 years ago

Populate a script with `map_<md5>=<sha512>` variable settings and
then run the following to convert the content link files:

    git ls-files -- '*.md5' | while read f; do
      md5="$(cat "$f")"
      sha512="$(eval echo \${map_$md5})"
      rm "$f"
      echo $sha512 > ${f%.md5}.sha512
    done