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ENH: Update ITKv4, SimpleITK and Swig

Sam Horvath requested to merge github/fork/jcfr/update-itk-simpleitk-swig into master

Created by: jcfr

// ------------------------------ ITKv4 changes:

Alexander Schmidt-Richberg (1): ENH: Updated Remote Module VariationalRegistration to new git tag

Ali Ghayoor (11): ENH: Make ITKv4 compatible with ITKSoftwareGuide ENH: Add GetCurrentStepLength to RegularStepGradDescentOptv4 ENH: Convert three ImageRegistration Examples to ITKv4 ENH: Add multi-Res and multistage registration Examples to ITKv4 ENH: Convert DeformableReg examples to ITKv4 reg framework BUG: Expand a test to reflect multi-metric registration bug BUG: Fix multi metric point sampling bug in ImageRegistrationMethodv4 ENH: Add direct initialization to SyN registration ENH: Direct initialization of SyN by restoring the state ENH: LandmarkBasedTransformInitializer supports BSplineTransformType DOC: Revise the registration examples of ITKSoftwareGuide

Arnaud Gelas (15): COMP: use find_package(VTK COMPONENTS) for LevelSetsv4Visualization ENH: Importing Laplacian Deformation for QuadEdgeMesh DOC: Add more explanation about SmoothingQuadEdgeMeshFilter's usage ENH: SmoothingQuadEdgeMeshFilter::SetCoefficientMethod calls Modified() ENH: Add progress report in itk::SmoothingQuadEdgeMeshFilter COMP: missing cast when calling gdcm::DataElement::SetByteValue ENH: increase LaplacianDeformation code coverage STYLE: use typedef rather than inheritance BUG: split include directories into appropriate cmake variables HDF5 BUG: missing gdcm libraries when using system GDCM DOC: fix doxygen documentaiton for itk::LaplacianDeformationQuadEdgeMeshFilter ENH: Add one method to erase a tag into MetaDataDictionary ENH: Adding SubdivisionQuadEdgeMeshFilters to ITK as remote module COMP: address clang -Winconsistent-missing-override in ITKQuadEdgeMesh COMP: fix warnings on dashboard for Subdivision remote module

Bill Lorensen (5): ENH: Specify required VTK modules COMP: Wiki examples require additional vtk modules ENH: Modify WikiExamples remote config COMP: Bad test signature COMP: Update tag for wiki examples

Brad King (5): ENH: Use if(DEFINED) to simplify conditions COMP: Fix vxl_config_macros checks broken by refactoring COMP: Fix one more vxl_config_macros check broken by refactoring BUG: Fix itk_module_config for repeated calls BUG: Fix itk_module_config for repeated calls

Bradley Lowekamp (51): PERF: Remove dynamically allocated temporary in evaluate method BUG: Implement ITK Style Singleton design pattern ENH: Add no throw exception specification for UnRegister methods COMP: Must specify order as "noexcept override" BUG: Add GetInverse for IdentityTransform ENH: Adding SetIdentity method to base DisplacementField class BUG: Remove unused redefinition of NULL BUG: Don't print to std::cout in PrintSelf ENH: Prefer the PrintSelfObjectMacro for printing nested objects BUG: Use METER of sCAL scale unit BUG: Use PNG_SCALE_METER for PNG sCAL unit COMP: Fix signed to unsigned int comparison ENH: Extract TiffReaderInternal to separate file ENH: Refactor ReadTwoSamplePerPixelImage into template function ENH: Refactor GenericReadImage into template function BUG: Remove Zeiss 2-channel support code in TIFFImageIO ( and LSMImageIO ) ENH: Refactor method to convert RGBA image to output buffer ENH: Refactor duplicated code to read a page BUG: Fix right oriented tiff images BUG: Remove dead separated plannar code, add test STYLE: Fix minor kwstyle defects in test and test results BUG: Use array delete operator for array new allocations ENH: add arbitrary TIFF TAGs to meta-data dictionary ENH: Reduce code duplicate in TIFFImageIO::ReadCurrentPage BUG: Address Coverity warning about null pointer dereferences ENH: Remove support for TIFF tile as 3D and dead code ENH: RGBA read images should stay unchanged. BUG: Override method to MakeOutput by name ENH: Refactor per pixel conversion function to per scan-line method PERF: Refactor color table lookup BUG: Adding missing parentheses around boolean expression ENH: adding TIFFImageIO test for RGB palette images PERF: Improve recursive Gaussian perfromance with VectorImages ENH: Query libtiff to determine compression support BUG: Support TIFF tiled image with TIFFReadRGBAImage BUG: Use SizeValueType for length of scanline PERF: Store causal results directly in output buffers COMP: Add explicit conversion to const char COMP: Explicitly add override to GetNameOfClass method COMP: Address internal segmentation fault with Intel compiler ENH: Adding method to set global physical space tolerance COMP: Explicitly add override to GetNameOfClass method BUG: Add new TypeMacro for non-overloaded classes BUG: Fix obscure race condition on access thread pool initialization BUG: Updating FDFImageIO remote module BUG: Fix segfault when setting displacement field as null BUG: Don't enable SSE rounding with OSX and gccxml BUG: Add portable access to Tiff field name BUG: Fix conversion compilation error BUG: Rename remote module FDFImageIO -> IOFDF BUG: IOFDF remote module should stay with InsightConsortium repo

Christopher Mullins (22): COMP: Allows latex to compile for ITKSoftwareGuide COMP: Wrap MeshBase templates COMP: Fix warning in BlockMatchingImageFilter STYLE: Line lengths in examples should be no longer than 80 chars. COMP: Wrap the remaining MeshBase and MeshToMeshFilter types. COMP: Fix LaTeX warnings. STYLE: Fix formatting/punctuation errors. STYLE: Formatting and punctuation fixes. DOC: Edits for Book 2 Chapter 1 documentation in the Examples. DOC: Edits for book 2 chapter 2. DOC: More chapter 2 edits DOC: Book 2 Chapter 3 edits (part 1) DOC: book 2 chapter 4 Segmentation edits STYLE: Fix line length in OpenJPEG license for 80 character. DOC: Finish the ImageLinearIteratorWithIndex example. DOC: Text and picture problems, book2 BUG: Fix text in margin issues DOC: Edits for the beginning of chapter 5, Statistics DOC: Fix empty code block. DOC: Fix code overlapping figure STYLE: Keep the text in the margins STYLE: Put newline before long doxygen reference

Cory Quammen (2): COMP: Avoid including VTK_USE_FILE within ITK BUG: Fix segfaults in ITKExamples

Danny Perry (2): BUG: adding test for vnl_sparse_matrix::mult() BUG: size of q buffer should actually be (this->rows())*pcols.

Dirk Padfield (1): BUG: Corrected processing of last sigma

GCC-XML Upstream (1): ENH: pygccxml v1.6.2 (reduced)

Hans Johnson (12): COMP: Add tolerance for comparing floating point PERF: Remove non-threadable algorithm components BUG: Syntax error in comment PERF: Add non-blocking mutex locking. ENH: Use TryLock minimize thread stalls BUG: ThreadedIndexedContainerPartitioner is inclusive STYLE: Remove include_regular_expression from Examples BUG: Demonstrate Inv(Inv(T)) != T BUG: Ensure Inv(Inv(T)) == T for transforms COMP: Valgrind detects uninitialized memory read COMP: Missing required base class API component ENH: Expand interface for selecting threadpool

Ismael Belghiti (1): DOC: Spelling Error in PatchBasedDenoisingBaseImageFilter

Jean-Christophe Fillion-Robin (1): Ensure ITKDeprecated is always excluded from the default module list.

Jim Miller (1): STYLE: Removing what appears to be a temporary file

Johan Andruejol (1): ENH: Fix normalization for null vectors and return the norm

Jon Haitz Legarreta (1): ENH: New test for itkLabelShapeOpeningImageFilter

KWSys Robot (3): KWSys 2014-09-08 (80e852f6) KWSys 2014-10-31 (88c8cc7f) KWSys 2014-11-12 (5843f590)

Kent Williams (10): COMP: use find_package(VTK COMPONENTS) to specify just needed VTK Components BUG: ImageSources/test/CMakeLists.txt incorrect library var reference COMP: Fix coverity defects related to RegistrationV4 examples COMP: silence warning of vnl_vector_fixed_ref::assert_size COMP: Fix various Coverity warnings COMP: Fix a typo in an error message print statement. COMP: itk::Command-derived class used pointless dynamic_cast. PERF: Don't recompute InternalInverse repeatedly COMP: Correct orientation/spacing for Philips MultiFrame ENH: Add test to exercise issue with Transform::GetInverse

Mark Hiner (2): ENH: Update SCIFIO remote module hash BUG: Fix duplicate variables in Windows

Matthew McCormick (90): DOC: Fix itkSetGetDecoratedInputMacro Doxygen macro. ENH: Move FFTComplexToComplexImageFilter out of Review. ENH: Add VnlComplexToComplexFFTImageFilter. BUG: Use fixed seed for Vnl FFT tests for repeatibility. ENH: Bump CMakeLists.txt version to 4.7.0. BUG: Do not run vnl_test_na with broken libc++. DOC: Fix Software Guide page overruns in IterativeClosestPoint{1,2}.cxx. DOC: Remove duplicate text in LaplacianRecursiveGaussian example. BUG: Uninitialized m_TransformDirection in ComplexToComplexFFTImageFilter. BUG: Fix offset[2] in PointSetToSpatialObjectDemonsRegistrationTest. STYLE: Fix style in VoronoiDiagram2D. BUG: Fix invalid assignment of second VoronoiBoundaryOrigin. BUG: Remove unused m_{SplitEpsilon,SigmoidPrimeOffset}. BUG: Fix Win MultiThreader check for successful process creation. BUG: Fix VTKPolyDataMeshIO writing for 2D second rank tensor. COMP: Fix ImageRegistration8RegisteredSlice.png baseline name. DOC: itk::statistics -> itk::Statistics. COMP: Fix transform type for ITKv3/IterativeClosestPoint2. COMP: Improve const correctness of GradientRecursiveGaussianImageFilter. COMP: ThreadJob NULL not defined. COMP: Remove unused typedefs in LevelSetsv4Visualization. COMP: Remove unused typedef's in VtkGlue. ENH: Mark BSplineWarping2Test as RUNS_LONG. COMP: Remove call for non-existent variable in Nifti debugging. BUG: Close the file on Read and Write in HDF5TransformIO. BUG: Remove InsightLegacy test code from TransformHDF5Test. ENH: Add {Set,Get}TransformIO for TransformFile{Reader,Writer}. STYLE: Use SeriesUIDContainerType and FileNamesContainerType ENH: Allow specification of orthogonality tolerance in rigid transforms. BUG: TransformFileReader does not clear its TransformList. BUG: Prevent dangling pointer in HDF5TransformIO. COMP: Do not use _stat64 with MinGW-32. COMP: Address LaplacianDeformation Doxygen warnings. COMP: Do not wrap the FixedArray of Image SmartPointer's. COMP: Add missing wrapping for TransformIOBaseTemplate. COMP: Mark DeformableRegistration6Test as RUNS_LONG. BUG: Use -py3 when building wrapping for Python 3. DOC: Improve ImageRegistration4 grammar. ENH: Add IOTransformDCMTK Remote module. DOC: Add migration guide for GDCM Rescale slope intercept apply on write. COMP: Remove unused typedef's in GPU code. STYLE: Improve style of HoughTransform2DLinesImageFilter example. COMP: Use ConceptChecking for IterativeInverse dimension check. COMP: Wrap TransformIOBaseTemplate for const SmartPointer. COMP: Add warning exceptions for third party pcre, swig, gccxml. ENH: Bump ITK version to 4.6.1. BUG: Add missing ITK_OVERRIDE to ITKImageeSources module. BUG: Remove GaussianImageSource members shadowing GenerateImageSource. STYLE: Style fixes to ITKImageSources module. BUG: GaussianSpatialFunction and GaborImageSource use SpacePrecisionType. BUG: Do not perform itk_download_attempt_check when not building ITK. DOC: Update GDCMImageIO rescale slope intercept doc. BUG: Only register requestion IO COMPONENT modules. BUG: Fix wrapping .i, .idx CMake dependencies. COMP: Add VTK Python module when wrapping ITKVtkGlue. STYLE: Remove NULL definition in itkVoronoiDiagram2DGenerator. STYLE: VoronoiDiagram2DGenerator defines a VoronoiDiagramType typedef. COMP: Add missing VTK module dependency for LevelSetsv4Visualization. BUG: By default, do not create any fixed parameters. STYLE: Remove trivial method comments in itkTransform.hxx. BUG: PolylineMask Filter's GenerateData is protected / virtual. ENH: Add HigherOrderAccurateGradient Module. BUG: Use input RequestedRegion Index in SliceBySliceImageFilter internal. COMP: Remove extra semi-colon, variable scope in DCMTKFileReader. STYLE: Style fixes for Transform classes. DOC: Increase Doxygen LOOKUP_CACHE_SIZE. BUG: MatrixOffsetTransformBase::GetFixedParameters not thread safe. DOC: Index Wiki examples with Doxygen. COMP: Bump SphinxExamples remote module. DOC: Index Sphinx examples in Doxygen. COMP: Remove old java examples. COMP: Remove duplicate DiffusionTensor3DReconstruction example reference. COMP: Address GradientAnisotropicDiffusionImageFilter example settings. COMP: Bump Sphinx Examples remote. COMP: Bump WikiExamples remote. BUG: Register AzimuthElevationToCartesianTransform to factories. DOC: Update texture feature class references. BUG: Fix texture feature correlation computation for constant image. STYLE: Put ImageToImageFilterCommon in its own file. BUG: Wrap ImageToImageFilterCommon. STYLE: Put ImageSourceCommon in its own file. COMP: Add missing itkImageRegionSplitterBase to ImageSourceCommon. BUG: Reset ITK_MODULES_REQUESTED to all modules with multiple calls. BUG: Configure against VTK 5. COMP: Add ITK_SOURCE_DIR to doxygen EXAMPLE_PATH. COMP: Increase DOT_GRAPH_MAX_NODES. DOC: Add Doxygen macros for itkSetGetDecoratedObjectMacro. ENH: Warning when reading a PNG with UNKNOWN unit and non-unit spacing. BUG: Fix VTK5 module export code. BUG: Fix LevelSetsv4Visualization VTK variable names.

Michka Popoff (38): ENH: Fixes for python 3 support BUG: Add VTK_VERSION for older VTK versions BUG: Improve SWIG version check COMP: Add wrapping for ThreadPool and ThreadJob COMP: Remove unimplemented DestroyPool method COMP: Fix itkVnlComplexToComplexFFTImageFilter wrapping COMP: Do not hide pygccxml warnings ENH: Update links in readme file STYLE: Remove trailing whitespaces STYLE: Set ITK_USE_SYTEM_ZLIB and ITK_USE_SYTEM_SZIP BUG: Fix memory leak in MetaImageIO after exception ENH: Add script to update pygccxml from upstream ENH: Remove Sun OS compatibility for the wrappings COMP: Fix for conversion to non-pointer like type warning STYLE: LabelObject style DOC: Remove broken link from LabelObject class description ENH: Do not setup the python tests if not asked ENH: Add new GetTypes() and GetTypesAsList() methods to the template class COMP: Fix CMP0054 warnings in wrappings STYLE: Remove old cmake < 2.8.4 specific code STYLE: Remove old cmake < 2.8.5 specific code ENH: Update to PCRE 8.36 COMP: Refactor Wrapping setup and fix legacy warnings ENH: Add wrapping configuration to ITKConfig.cmake STYLE: Some minor code cleanup in the wrapping setup DOC: Fix typo in RelabelComponentImageFilter ENH: Deprecate VectorResampleImageFilter DOC: Add migration guide for ::Zero and ::One ENH: Deprecate ::Zero and ::One ENH: Add option to disable sorting by size in itkRelabelComponentImageFilter ENH: Add Vector and RGB wrapping to linear interpolator STYLE: Remove SORT macro in wrappings COMP: Fix warning for InterpolateImageFunction wrapping COMP: Add a check for Blocks in GPU module COMP: Bump SCIFIO to fix test build warnings COMP: Fix wrapping of itkImageFunctionBase ENH: Add CVD and CVF types to VectorIndexSelectionCastImageFilter wrappings DOC: Improvements for Book1, Chap4

Nick Tustison (7): BUG: Need to explicitly specify spline order. ENH: Initializing the transform center. BUG: Need to check the dynamic cast before any calls. ENH: Adding modifications for point set metrics. BUG: Need to specify TInternalComputationValueType for default metric. ENH: Adding sparse points to B-spline field estimate. BUG: Uninitialized variables.

Richard Beare (1): ENH: Include TIFF tags in the MetaDataDictionary

Taylor Braun-Jones (1): BUG: Fix SliceBySliceImageFilter doesn't propagate information internally

Umang B (1): ENH: Use thread pool to dispatch multithreading tasks

Vivien Delmon (2): BUG: ExtractImageFilter::CollapseToSubMatrix fix ENH: Add a test on extracted directions in CollapseToSubMatrix mode

Vladimir S. FONOV (1): BUG: Fixing incorrect MINC style inverse transform

Ziv Yaniv (1): COMP: fixed warnings from gcc4.1.2, made implicit casts explicit

// ------------------------------ SimpleITK changes:

$ git shortlog f2241a13..57e6a526 --no-merges Bradley Lowekamp (199): Adding ANTS neighborhood correlation to registration method BUG: UseHistograms was not getting set on ITK filter Updating ITK tag along 4.6.0 release Hide visibility warnings Adding Compare class for transform classes. Adding basic comparison driver to compare a transformation Adding basic test of the transform compare driver Don't automatically convert to md5 hashes for files. Moving Python tests to the AdditionalTests file Update Python Examples and manual unit tests with standard DATA{} Remove the fixed image used for reference Adding TRANSFORM_COMPARE option to sitk_add_test rename cmake support file with sitk prefix Moving sitk custom add test function to separate cmake file rename variable SITK_DATA_ROOT to SimpleITK_DATA_ROOT Move python add_test wrapper to separate cmake file Moving CXX Example testing to examples directory Moving python example tests to example directory Moving Ruby Lua and TCL example tests to example directory remove check for build examples from add tests Use if COMMAND to detect if a function is defined Move Java test examples to example directory Moving R add test wrapper to common cmake file Adding missing R SimpleGaussian example Moving CSharp examples test to example directory Always allow sitk_add_?_test In test assert array is not empty Adding comparison for ImageRegistrationMethod1 example Improve CXX ImageRegistration2 Switching to JointHistogram MI metric Adding verification of for python ImageRegistrationMethod2 Adding baseline image for demons registration examples Always print dart measurement for RMSDifference Use "true" for bool values to avoid int to bool comparison warnings Adding initial Euler3DTransform class Adding Euler3DTransform to header and wrapping BUG: Add check for correct size of parameters to transforms Add virtual method to set pimple transform Core improvements to Euler3DTransform Adding comprehensive test of the Euler3DTransform. Fix some style issues with EulerTransform interface Adding specific translation transform interface Adding specific interface for the affine transform Adding specific interface for Euler2D transform Adding specific versor transform interface Adding transform interfaces for 2d and 3d similarity transforms Fix PatchBasedDenoising warning for double to in conversion Fix unused variable warning Set Scale function pointer to null Use setter methods for Euler3D constructor with values Adding skeleton test place holders for transforms Using const vector & for function object parameters Fix wrong function called for GetCenter COMP: VS11+ requires C++11 nullptr for assignment to std::function Detect C++11 nullptr keyword define SITK_NULLPTR as it or NULL Adding testing for affine transformation Adding gtest predicate and macro for tolerant vector compares completed testing for affine transformation Adding comprehensive testing for euler2d transform Fix default argument to euler2d constructor Set old function pointers to null before initializing Adding Set/GetTranslation method to Similarity3D Adding comprehensive test for Similarity3D Transform Remove reference to double for Scale variable Adding comprehensive test for similarity 2d transform Remove extra Translate method from Versor transform Adding specific interface for VersorRigid3D transform Adding tests for the versor rigid3d transform Remove pre argument for Translate methods Adding more testing for transforming points COMP: Fix operator<< for std:vector in custom gtest predicate Adding missing header files for testing Refine logic of using c++11 nullptr Adding testing for Similarity2D constructor Adding rough json file to generate initial code Adding initial generated code from json Rename CenterVersorTransformInitializer to add Filter Suffix Correct the Versor Initialization wrapping code Print parent process object and minor documentation tweaks Adding initial testing for Versor transform initializer Fixing conversion double to uint8_t conversion warning in test Improve error message for transform initializers Adding explicit constructor from base transform to vesor Moving vector testing facilities to SimpleITKTestHarness Must include test harness before gtest Moving VectorDoubleRMS Predicate to cxx file Adding inline keyword to functions in anonymous namespace Adding explicit conversion constructor to transform from base class Adding comprehensive testing for the versor initializer Explicitly use Self qualifier for virtual method in constructor Adding wrapping for ScaleSkewVersorTransform Adding comprehensive testing for ScaleSkewVersorTransform Don't take address of zero sized std::vector Move Matrix/Direction conversion function to TemplateFunctions header Adding protected constructor for derived classes to construct pimple Adding transform specific interface for bspline transforms Adding basic testing for BSplineTransform Adding testing of point transform and skew setter Adding rough json file to generate initial code Adding initial generate code from json Rename initial generated files Modify generate code for BSplineTransformInitializerFilter Adding testing for the BSplineTransfromInitalizerFilter Correct skewed point expected value Updated ITK super build to tag v4.6.0 Updating to the official ITK v4.6.0 tag Adding GetCoefficientImages method Convert <sp> tag to a space Updating JSON doc string from ITK 4.6 with spacing corrections. Fix errors in the BSpline test Setting BSpline functions pointers to null before initialization ENH: Adding masking of fixed and moving image for registration BUG: exit with failure code when not enough arguments are specified. Adding BSpline registration examples based on ITK DeformableRegistration4 ITKv4.6 changes the results, renaming old baseline Update FFTConvolution baseline for change in origin Rename the registration tests file to sitkMethodRegistrationTests Create itk SpatialObject from image with conversion Move the logic for checking the dimensions of mask match Adding testing of mask with registration Fix miss matched parenthesizes. Fix logic in assert statement. Add basic filters library to registration ENH: Adding MultiResolutionIterationEvent Adding a Python example for multi-resolution BSpline registration Adding baseline for new bspline example Add SetIdentity method to transform interface Adding comprehensive testing for SetIdentity. Fix test not clearing string Add Transform IO support for BSpline of order 1,2,4 Addd BSpline::GetOrder method Support creation of bspline of order 1,2,3,4 Adding testing for bspline order BSplines of order 0,1,2,3 are support, not 4 Use unsigned int for bspline order type Add support for different bspline order in the initializer. Adding GetInverse method to transforms Adding doxygen comment for SetInverse Adding comprehensive testing for GetInverse method Adding missing declaration of GetInverse in PimpleTransform base Adding Transform::IsLinear method BUG: Use fix image as reference image for bspline transform Rename registration SetTransform to SetInitialTransform Adding testing for registration transform inplace option Adding documentation for SetInitialTransform method Adding new registration methods to set moving and fixed transforms Adding testing for the initial transforms Adding doxygen documentation for initialize transform methods. Fix header guarder name to match file Use helper macro to set member function pointers BUG: Delete pimple before setting Remove extra std::auto_ptr in transform pimple Adding ScaleVersorTransform interface. Adding Get/Set Matrix method to affine transform Use the transform helper set macro in versor transforms too Add GetMatrix method to matrix offset based transforms Adding implementation of GetInverse method for transform class. Adding doxygen documentation to the GetInverse method. Adding testing for transform's GetInverse method Adding testing for GetMatrix method Adding testing for transform SetMatrix method Add accessor method to get the optimizer scales. Adding doxygen documentation for the GetOptimizerScales method Adding example which utilizes center estimator and scales estimator Adding baseline images and testing for the registration3 example Adjust RMS error for displacement field for IRM3 test Updating generated documentation strings for SWIG. Manually updating R package version. Update BugReports URL for R wrapping Updating ITK Superbuild version to 4.6.1 BUG: Pass system search paths from system build to external builds Do a try import on setuptools then fall back to distutils Add setupegg.py which uses ez_setup to get setuptools When installing the wheel package use ez_setup Fix Python Download URL BUG: Adding missing cmake error variable for wheel process Replaced python execfile with python 3 compatible code Update ITK External superbuild to ITK 4.7rc01 Add export specification for instantiated Transform::InternalInitialization Fix Registration library's dependency on library with Cast filter Make BasicFilters1 library manually specified. Correctly do explicit instantiation of member function with specified linkage. Updating ITK superbuild towards 4.7rc2 Fixing conversion double to uint8_t conversion warning in test ENH: Updating JSON from ITK doxygen Revert "Updating generated documentation strings for SWIG." Add Doygen grouping to overloaded procedural methods Adds space before for ulink doxygen nodes to SWIG Updating SWIG doc strings from latest updated json files. Updating Lua Example to latest registration Update to v4.7rc01 tag for ITK superbuild Fix png inputs sCal flag Fixing png sCal field to METER Update ITK superbuild to the official 4.7.0 release Updating SimpleITK version to v0.8.1 Updating PythonDownloadPage with 0.8.1 eggs BUG: Correct check for empty string for CMake variable type Explicitly use DEFINED to check if variable is set BUG: Apply escape sequence to problematic characters.

Dave Chen (3): Patch to remote -k flag for gzip Added missing commas in new JSON files DOC: Fixed spacing in the XML to JSON script

David T. Chen (4): ENH: Perform download of ITK tag file during build time Changed useSeriesDetails default to false Fixed for Python 3 Added ImageRegistrationMethod1 example

Ziv Yaniv (1): COMP: CMake change that ensures ITK required modules are on.

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