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Transform fixes 3610 3611

Andras Lasso requested to merge github/fork/lassoan/transform-fixes-3610-3611 into master

Fixes for these issues: http://na-mic.org/Mantis/view.php?id=3610 http://na-mic.org/Mantis/view.php?id=3611

See details in the commit comments.

The commit 9a36f6fb was left in accidentally, but it's a minor change that has been integrated into the Slicer core already, so I guess it should not cause any trouble.

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