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Update ITK to latest 4.13 release branch and update BRAINSTools

Dženan Zukić requested to merge github/fork/dzenanz/master into master

Some tests are failing locally, but they are mostly overlapping with currently failing tests on the dashboard. These are minor updates, and should be non-problematic.

Linux failures:

	  9 - py_cmake_slicer_extensions_index_build_with_upload_using_ctest (Failed)
	 10 - py_cmake_slicer_extensions_index_build_without_upload_using_ctest (Failed)
	415 - qSlicerReformatModuleWidgetGenericTest (Failed)
	441 - vtkMRMLVolumeRenderingMultiVolumeTest (Failed)
	467 - py_nomainwindow_qSlicerDICOMModuleGenericTest (Failed)
	468 - py_nomainwindow_qSlicerDICOMPatcherModuleGenericTest (Failed)
	552 - qSlicerApplicationTpyclTest1 (Failed)
	612 - py_nomainwindow_DCMTKPrivateDictTest (Failed)
	621 - py_DICOMReaders (Failed)
	623 - py_sceneImport2428 (Failed)
	634 - py_RSNAVisTutorial (Failed)
	642 - py_JRC2013Vis (Failed)
	644 - py_SubjectHierarchyGenericSelfTest (Failed)
	658 - EMSegCL_RunDefaultNodes (Failed)
	659 - EMSegCL_RunSetEverything (Failed)
	666 - EMSegCL_IntermediateResults (Failed)
	668 - EMSegCL_Task_BRAINS_MRIHumanBrain_scalartype_float_very_small (Failed)
	669 - EMSegCL_Task_BRAINS_MRIHumanBrain_scalartype_uint_very_small (Failed)
	670 - EMSegCL_Task_MRIHumanBrain_2CH (Failed)
	671 - EMSegCL_Task_MRIHumanBrain_BRAINS_small (Failed)
	672 - EMSegCL_Task_HumanEye_BRAINS_small (Failed)
	673 - EMSegCL_Task_MRIHumanBrainExp_BRAINS_small (Failed)
	674 - EMSegCL_Task_MRIHumanBrainParcellation_BRAINS_small (Failed)
	675 - EMSegCL_Task_MRIHumanBrainFullParcellation_BRAINS_small (Failed)
	676 - EMSegCL_Task_NonHumanPrimate_BRAINS_small (Failed)
	684 - py_LandmarkRegistration (Failed)

MacOS failures:

	  9 - py_cmake_slicer_extensions_index_build_with_upload_using_ctest (Failed)
	 10 - py_cmake_slicer_extensions_index_build_without_upload_using_ctest (Failed)
	415 - qSlicerReformatModuleWidgetGenericTest (Failed)
	467 - py_nomainwindow_qSlicerDICOMModuleGenericTest (Failed)
	468 - py_nomainwindow_qSlicerDICOMPatcherModuleGenericTest (Failed)
	594 - py_nomainwindow_SlicerOptionDisableSettingsTest (Failed)
	610 - py_nomainwindow_DCMTKPrivateDictTest (Failed)
	619 - py_DICOMReaders (Failed)
	621 - py_sceneImport2428 (Failed)
	625 - py_Slicer4Minute (Failed)
	626 - py_SlicerBoundsTest (Failed)
	632 - py_RSNAVisTutorial (Failed)
	633 - py_RSNAQuantTutorial (Failed)
	634 - py_slicerCloseCrashBug2590 (Failed)
	636 - py_SlicerTransformInteractionTest1 (Failed)
	639 - py_RSNA2012ProstateDemo (Failed)
	640 - py_JRC2013Vis (Failed)
	641 - py_FiducialLayoutSwitchBug1914 (Failed)
	642 - py_SubjectHierarchyGenericSelfTest (Failed)
	655 - py_LandmarkRegistration (Failed)

Windows failures:

          6 - cmake_slicer_generate_extension_description_test (Failed)
          7 - py_cmake_slicer_extensions_index_build_without_upload (Failed)
          8 - py_cmake_slicer_extensions_index_build_with_upload (Failed)
        442 - py_VolumeRenderingSceneClose (Failed)
        454 - py_LabelStatistics (Failed)
        458 - py_ScreenCapture (Failed)
        461 - py_SegmentStatistics (Failed)
        467 - py_nomainwindow_qSlicerDICOMModuleGenericTest (Failed)
        468 - py_nomainwindow_qSlicerDICOMPatcherModuleGenericTest (Failed)
        508 - MergeModelsTestCompare (Failed)
        552 - qSlicerApplicationTpyclTest1 (Failed)
        597 - py_nomainwindow_SlicerOptionDisableSettingsTest (Failed)
        602 - py_nomainwindow_MRMLCreateNodeByClassWithoutSetReferenceCount (Failed)
        613 - py_nomainwindow_DCMTKPrivateDictTest (Failed)
        620 - py_AtlasTests (Timeout)
        622 - py_DICOMReaders (Failed)
        624 - py_sceneImport2428 (Failed)
        632 - py_ScenePerformance (Failed)
        634 - py_SlicerRestoreSceneViewCrashIssue3445 (Failed)
        635 - py_RSNAVisTutorial (Failed)
        643 - py_JRC2013Vis (Failed)
        644 - py_FiducialLayoutSwitchBug1914 (Failed)
        645 - py_SubjectHierarchyGenericSelfTest (Failed)
        661 - EMSegCL_RunDefaultNodes (Failed)
        662 - EMSegCL_RunSetEverything (Failed)
        669 - EMSegCL_IntermediateResults (Failed)
        671 - EMSegCL_Task_BRAINS_MRIHumanBrain_scalartype_float_very_small (Failed)
        672 - EMSegCL_Task_BRAINS_MRIHumanBrain_scalartype_uint_very_small (Failed)
        673 - EMSegCL_Task_MRIHumanBrain_2CH (Failed)
        674 - EMSegCL_Task_MRIHumanBrain_BRAINS_small (Failed)
        675 - EMSegCL_Task_HumanEye_BRAINS_small (Failed)
        676 - EMSegCL_Task_MRIHumanBrainExp_BRAINS_small (Failed)
        677 - EMSegCL_Task_MRIHumanBrainParcellation_BRAINS_small (Failed)
        678 - EMSegCL_Task_MRIHumanBrainFullParcellation_BRAINS_small (Failed)
        679 - EMSegCL_Task_NonHumanPrimate_BRAINS_small (Failed)
        687 - py_LandmarkRegistration (Failed)

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