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patches: apply with --whitespace=fix

Ben Boeckel requested to merge ben.boeckel/common-superbuild:whitespace-patch-apply into master

The silo patch in ParaView is applied to a Windows-newline file, but patches end with regular newlines. Git complains and fails about trailing whitespace, but telling it to "fix" it makes the file come out as wanted. Other patches should not be affected.

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