Change-Id: I721d91a75a04f485a34aeed9fa04b154d892b1f8

7ff8bfd0 Two fixes for certain lsm (zeiss) tiff images.

048419fb Add SetSlabModeToSum() to vtkImageResliceMapper.

This change allows vtkImageResliceMapper to produce images that look
like digitally reconstructed radiographs.  It required a new property
to be added to vtkImageReslice, called ScalarScale, so that the output
intensity can be appropriately scaled to the slab thickness, which is
specified in physical units of distance (typically millimeters).  An
existing test was modified in order to test this new feature.

A ScalarShift property was also added for symmetry with ScalarScale,
plus an OutputScalarType property so that vtkImageReslice can output a
different scalar type than its input (useful for avoiding overflow with
SetSlabModeToSum()).

This change also fixes a performance issue that was introduced in August
2011 when the SetInterpolator() method was added: that change caused the
scalar conversion to always clamp to the limits of the output type, even
when clamping was unecessary.  Now, clamping is only done when needed.

Change-Id: I5e55db509e8ec537632a7a7e063a3bc0c50d9d20

d0c862b4 Clean an enhance hypertree grids.

e7aa61da Add reader/writer for NIFTIv1 and NIFTIv2 files.

This patch adds support for reading and writing NIFTI files, as well
as full access to the NIFTI header.  Versions 1 and 2 of the NIFTI
header are supported, and the reader can also be used to read Analyze 7.5
files, though the only Analyze header elements that are supported are the
ones that overlap with NIFTI.  Automatic compression and expansion for
gzipped files is also provided whenever the filename ends with a .gz
extension.

Change-Id: Iead3afb1a65d8c01aa52f3ca55c6da2f08703375

eb1a585d ENH: Provide PlaybackFile for recorded interaction events

f82238ed PERF: Parallel streamline was slow. Fixed.

The first fix is that some zeiss images set PlanarConfig to "SEPARATE"
(i.e. separate color planes) even when NumberOfSamples is 1.  When the
number of samples is one, the PlanarConfig can be safely ignored.

The second fix is that ReadVolume assumed that the number of slices was
always equal to NumberOfPages, which was in conflict with ExecuteInformation
which set the number of slices to SubFiles if SubFiles > 0 (cf line 505).
This caused a crash, because ReadVolume was reading more data than the
reader had allocated space for.

Change-Id: I822e45a53c210b5edebfe8ce27443fe1434110ba

0fe573e8 Fix the extent for tiled tiff files.

There was an off-by-one error in the setting of the extent.

Change-Id: I1818184845a11bc7cbf560e4bfb270a943c8a8ac

Many of the Widget tests supply in-code event logs. This patch adds
an additional option to vtkTesting::InteractorEventLoop. The new
option, --PlaybackFile, supplies a file name for the
InteractionRecorder. This allows tests to modify the playback
events without changing the source code for the test. This separates
changes to the playback events from changes to the test code.

A couple of tests have been modified to illustrate the usage of the
InteractorEventLoop.

In the future, the current widget tests should be changed to use the
InteractionEventLoop rather than ifdef'ed code for playing and
recording.

Change-Id: I6aa2afd7c161fe82646fc1df7d326ca8a3249a2f

vtkPStreamTracer was causing the creation of a new locator at
every iteration (task), which is very slow for cell locators
since they have to bin data every time. Fixed by removing
the reallocation and using one locator. The input data does not
change between iterations so recreationg the locator was totally
unnecessary.

Change-Id: I966f25caf2e05ba08355a426f3e31f1ac66517ef

cbd4884d Fix a crash when deleting vtk-python objects.

14071140 add SSL support to VTKWeb server

30e74c14 Add configuration pass to Catalyst PVW workflow

Change-Id: Ib9619597387940a1286edbe0fdd15ec61931147e

New command-line arguments allow us to serve VTKWeb content
over secure websockets.

Change-Id: Ieb5bb9c5a4387bd9ec6c738546f3622480b7b2f1

94f12816 ExternalData: Add backtrace to missing file warning

33920cf2 BUGFIX: Add guards for NULL ivars in PrintSelf

cd0b6e68 Set MACOSX_RPATH property default consistently across CMake versions

The PrintSelf method of vtkStructuredImplicitConnectivity
was causing failures in the otherPrint test b/c it was
dereferencing NULL ivars. Fixed that by adding guards
to chekc if the ivars are NULL.

Change-Id: I50416653e14d5af50a6408c09129f1deebf63ebf

Since commit 32e48028 (If the original file is missing, make it
non-fatal, 2013-10-31) we use a STATUS message instead of a FATAL_ERROR
to report that a DATA{} reference names a missing file.  The STATUS
message has no backtrace.  Use an AUTHOR_WARNING message instead.

Also restore the FATAL_ERROR message when the DATA{} reference names a
file that exists as a directory.

Change-Id: I2cbcb8f6667074401ea9f7743cf6e547ec5061a0

The MACOSX_RPATH target property was introduced in CMake 2.8.12, but we
currently allow CMake 2.8.8.  Set CMAKE_MACOSX_RPATH to 0 by default
so that we get consistent behavior across all versions of CMake.
Leave a comment explaining when the default should be updated.

Now that we set a MACOSX_RPATH default explicitly, we no longer need to
set CMake Policy CMP0042 as was added in commit 2ad9f474 (Set CMake
Policies CMP0025 and CMP0042 as necessary, 2014-03-11), so remove it.

Change-Id: I8af24a728379176b9e7ab933206eaa956e1c60f2

09f9d205 Fix several catalyst web UI issue

Composite search zoom level
Image size inside search result
Search stat state
Synch control ui with interactive Phi change

Change-Id: I92533f0e5972c25a0991cf8c9643ee58e9554933

82a116b8 Honor VTK_INSTALL_NO_DEVELOPMENT for archive libraries

cc6002ea Add runtime libraries on Windows for Java binary package

Extend VTK_JAVA_INSTALL section to properly integrate
runtime libs in the custom generated package.

Change-Id: I857118e1554ca2d1193048058454f1203e3ae622

843bd4d2 COMP: Update vtkFiltersParallelMPI tests

Updated tests in the vtkFiltersParallelMPI module to reflect changes in
VTK's test macros.

Change-Id: I81d3983a35f3fe2e49cb2b83f2771d2c92084ff2

e42bbf8f ENH: Implicit structured data connectivity
e4c0566b ENH: FieldData deserialization to a subextent
f41f521f BUGFIX: Fix integer overflow in vtkStructuredData
271954af ENH: DuplicateNodes property to RCB partitioners

This commit introduces the vtkStructuredImplicitConnectivity class, intended
as a lower-level helper that provides functionality for resolving
situations where "gaps" are present in a distributed structured dataset. Gaps
are resolved by communicating the data (growing the grid to the right) as
necessary to close the gap. This situation is common with finite difference
grids that are partitioned with respect to the nodes of the grid, or when some
other post-processing filter, e.g., sampling the grid to reduce the resolution
introduces a gap.The present implementation requires one grid per process and
can deal with 2-D datasets -- XY,XZ,YZ -- as well as 3-D datasets. A test for
all 2-D and 3-D cases is also added.

Change-Id: I5260ce4fb5ced45434a719c8aacc2153253917a7

c05001df Use vtkMPI.cmake helper for all module MPI tests

In commit cd4fc15a (Rewrite the testing macros, 2014-03-14)
the vtk_test_mpi_executable() helper was introduced to add
MPI tests.  It depends on the vtk_mpi_link() helper in the
vtkMPI module.  Include the latter in all test CMakeLists.txt
files that add MPI tests.

Change-Id: Ifecc7c6b1bf856a8f66905bfb2d69e22b5de3aac

VTK module archive libraries are installed as part of the "Development"
component and so should be excluded by the VTK_INSTALL_NO_DEVELOPMENT
option.  Convert vtk_target_install() to a function so we can return()
early from it to skip static libraries.

Change-Id: Ib1be04898d4083b30b1b2a85765ecb77672c8d92

56a6e7bc FiltersGeometry: Remove unnecessary links

The TEST_DEPENDS module option already takes care of this.

Change-Id: Ib27e0d7a6d362f9358c512b0f6fb934cc35605a4

87af8da1 Fix basic catalyst viewer with theta