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Invoke `smtk::resource::Metadata::write()` properly.

David Thompson requested to merge dcthomp/smtk:metadata-fix into master

The signature has changed to require smtk::common::Managers::Ptr as a second argument. It is unclear how this compiled properly without the second argument.

Also, several changes are required to properly pass a reference to the smtk::common::Managers instance directly, rather than its contents.

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