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Updates to omega3p

John Tourtellott requested to merge john.tourtellott/simulation-workflows:updates-to-omega3p into master

This branch fixes a misconception about ports and waveguides, which are synonymous. So the Port tab is removed, and a port is written out for each boundary condition of type Waveguide. (The label "Waveguide" was also changed to "Port" in the UI). This branch also adds the missing option to specify the prefix name for mode files

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