Adding a new reader for OME TIFF files. Currently only single-file
multi-page TIFF files are supported.

vtkTIFFReader now support reads a subvolume for a multi-page image.

Making `ReadVolume` simply call `ReadImageInternal` where appropriate
instead of duplicating the code. Also cleanups the slight discrepancy
between the two implementations by making `ReadImageInternal` handle
flipping of Y when using `TIFFReadRGBAImage`.

David Gobbi authored 5 years ago and Kitware Robot committed 5 years ago

257b9d7b Compatibility for Python 3.8

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ben Boeckel <ben.boeckel@kitware.com>
Merge-request: !5883

David Gobbi authored 5 years ago and Kitware Robot committed 5 years ago

257b9d7b Compatibility for Python 3.8

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ben Boeckel <ben.boeckel@kitware.com>
Merge-request: !5883

Robert Maynard authored 5 years ago and Kitware Robot committed 5 years ago

eeca9b3f VTK now requires CMake 3.8, so remove these checks and patches

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ben Boeckel <ben.boeckel@kitware.com>
Merge-request: !5884

Mathieu Westphal (Kitware) authored 5 years ago and Kitware Robot committed 5 years ago

e62685da Adding support for histogram in vtkScalarsToColorsItem
e481f8d2 Add EnableOpacityMapping option to vtkPlotBar
56f2e225 Corrrecting two tests that were not testing

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Nicolas Vuaille <nicolas.vuaille@kitware.com>
Acked-by: Joachim Pouderoux <joachim.pouderoux@kitware.com>
Merge-request: !5588

The PyTypeObject struct was modified in Python 3.8, this change is
required to avoid compile errors.

Allison Vacanti authored 5 years ago and Kitware Robot committed 5 years ago

cd9ec58e Use actual ValueTypes when computing value ranges.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Allison Vacanti <allison.vacanti@kitware.com>
Merge-request: !5870

Fixes #17664.

We currently truncate to double precision, which gives incorrect results
on 64-bit integers.

We need to enable `/bigobj` on MSVC to support the larger symbol tables
needed to handle the template codegen.

This does not cache the ranges like GetRange does, since we do not have
the infrastructure to do so (we don't have information keys for large
integers). Issue #17666 reflects this.

Since the GetRange implementations in vtkDataArrayPrivate.txx
depend on vtkSMPTools, which pulls in tbb, which pulls in
windows.h under MSVC, we cannot directly include this code
in the GenericDataArray headers. Instead, 64-bit integer
implementations are compiled into a new vtkGenericDataArray.cxx
translation unit for AOS, SOA, and ScaledSOA data arrays. All
other array/value types will go through the double interface
of vtkDataArray::ComputeRange.

A test has been added to ensure that the common array types
are able to return their full ValueType range from
GetValueRange to make sure we continue to support the full
ranges going forward.

This adds the support for showing an Histogram in vtkScalarsToColorsItem

 * Add an vtkPlotBar that can be created by calling SetHistogramTable
 * Color it automatically when using vtkTransferFunctionItem
 * Add/Update tests accordingly

Yohann Bearzi (Kitware) authored 5 years ago and Kitware Robot committed 5 years ago

cbcf2189 Fix crash on axis cut filter for hyper tree grid

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Sebastien Jourdain <sebastien.jourdain@kitware.com>
Merge-request: !5875

Lucas Gandel authored 7 years ago and Mathieu Westphal (Kitware) committed 5 years ago

Add option to enable/disable mapping of opacity values when using the
lookup table in vtkPlotBar.
Add parameter to specify the desired output format in MapScalars for
vtkScalarsToColors. For backward compatibility reason, the default output
format is VTK_RGBA if no parameter is specified.

TestColorTransferFunction and TestMultipleScalarsToColors referenced
an old class naming in a test that is not needed anymore.
This has been removed.

Mathieu Westphal (Kitware) authored 5 years ago and Kitware Robot committed 5 years ago

f14fad62 Fix a memory error in vtkAngularPeriodicDataArray

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Joachim Pouderoux <joachim.pouderoux@kitware.com>
Acked-by: Nicolas Vuaille <nicolas.vuaille@kitware.com>
Merge-request: !5874

Fix a memory error in vtkAngularPeriodicDataArray
and test the code path.

Michael Migliore authored 5 years ago and Kitware Robot committed 5 years ago

92879a7a Fix binding order

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Mathieu Westphal <mathieu.westphal@kitware.com>
Merge-request: !5877

In the case of slicing on cell boundaries, the filter added children
from 2 different cells when it should only do it for one.
Changing the test condition for going through the children fixes the
problem.

This commit also added a call to Initialize from vtkHyperTreeGrid
at the beginning of the filter to make sure we are with clean data

Yohann Bearzi (Kitware) authored 5 years ago and Kitware Robot committed 5 years ago

b0bf7973 Added an extent check before calling ProcessTrees
f5d14a09 Fix axis clipping crash + fix Initialize for HTG

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Sebastien Jourdain <sebastien.jourdain@kitware.com>
Merge-request: !5871

When using MPI, ProcessTrees could sometimes be called with empty input,
which you can catch by looking at its extents. If they are ill-formed,
the algorithm should not be executed. A check on extents was already
present in vtkHyperTreeGridPlaneCutter. It is now moved to
vtkHyperTreeGridAlgorithm, before calling any algorithm.

Clipping crash filter was crashing due to inexact `Dimensions`attribute
in the filter. An other crash happened when clipping multiple times an
HTG with the same filter and different parameters. Crash was due to an
incomplete `Initialize` method in `vtkHyperTreeGrid`, causing its `Mask`
attribute to share the same address as `OutMask` attribute in
`vtkHyperTreeGridAxisClipFilter`, messing up the algorithm.

`vtkHyperTreeGrid::Initialize` has been complete with initializing all
other miscellaneous attributes.

Chuck Atkins authored 5 years ago and Kitware Robot committed 5 years ago

ed110926 Adding long long support
e3f46bf2 Consistent NewDataArray types
8f6e3873 Replace size_t with std::size_t

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Cory Quammen <cory.quammen@kitware.com>
Acked-by: Chuck Atkins <chuck.atkins@kitware.com>
Merge-request: !5860

Allison Vacanti authored 5 years ago and Kitware Robot committed 5 years ago

a9083354 Update MomentInvariants SHA.
8e2144c5 Update vtkm.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !5873

Yohann Bearzi (Kitware) authored 5 years ago and Kitware Robot committed 5 years ago

1b50dc08 Warning fix
045af6d6 Added x,y,z translation locks to various widgets
4493586d update LineWidget2 translation lock + SplineWidget

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Utkarsh Ayachit <utkarsh.ayachit@kitware.com>
Merge-request: !5788

Yohann Bearzi (Kitware) authored 5 years ago and Kitware Robot committed 5 years ago

9b5ede3f Fix missing cell in splice plane filter for htg

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Sebastien Jourdain <sebastien.jourdain@kitware.com>
Merge-request: !5865

Allison Vacanti authored 5 years ago and Kitware Robot committed 5 years ago

32949289 Fix nvlink warnings on CUDA 10.1.
3ca1b780 Add AutoOrientNormals functionality to vtkmPolyDataNormals.
7fffded0 Bump internal VTK-m tag to master.

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Robert Maynard <robert.maynard@kitware.com>
Merge-request: !5850

Joachim Pouderoux authored 5 years ago and Kitware Robot committed 5 years ago

59e7ae1c Add back vtkPD/vtkUG::GetPointCells with unsigned short ref parameter

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Will Schroeder <will.schroeder@kitware.com>
Merge-request: !5797

Chuck Atkins authored 5 years ago and Kitware Robot committed 5 years ago

0d25b675 adios2: Tweaking BP4 support

Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !5863

The test for calling this->PlaneCut was ignoring cases where points
were in the plane, leading to missing cells.

Chuck Atkins authored 5 years ago and Kitware Robot committed 5 years ago

34058c3d IOADIOS2: Re-organize CMakeLists.txt and disable VTX on Windows+Mac

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Cory Quammen <cory.quammen@kitware.com>
Merge-request: !5857

Chuck Atkins authored 5 years ago and Kitware Robot committed 5 years ago

f6fd8137 IOADIOS2: Support the BP4 engine in CoreImageReader

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Haocheng LIU <haocheng.liu@kitware.com>
Merge-request: !5859

Sebastien Jourdain authored 5 years ago and Kitware Robot committed 5 years ago

23040bc9 Wiped Plane Cutter data for filter update calls

Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Sebastien Jourdain <sebastien.jourdain@kitware.com>
Merge-request: !5855

We already suppress these warnings when building the VTK module, but
the tests have similar warnings that need suppression.