Commit 89d42c37 authored by Charles Law's avatar Charles Law
Browse files

Parallel reader/writer for paraview. ALso some bug fixes.

parent c32d49b9
......@@ -1463,6 +1463,7 @@ void *vtkImageData::GetScalarPointerForExtent(int extent[6])
void *vtkImageData::GetScalarPointer(int coordinates[3])
{
vtkDataArray *scalars;
int *incs;
int idx;
// Make sure the scalars have been allocated.
......@@ -1492,9 +1493,10 @@ void *vtkImageData::GetScalarPointer(int coordinates[3])
}
// compute the index of the vector.
idx = ((coordinates[0] - this->Extent[0]) * this->Increments[0]
+ (coordinates[1] - this->Extent[2]) * this->Increments[1]
+ (coordinates[2] - this->Extent[4]) * this->Increments[2]);
incs = this->GetIncrements();
idx = ((coordinates[0] - this->Extent[0]) * incs[0]
+ (coordinates[1] - this->Extent[2]) * incs[1]
+ (coordinates[2] - this->Extent[4]) * incs[2]);
return scalars->GetVoidPointer(idx);
}
......
......@@ -752,12 +752,11 @@ void vtkDataSetSurfaceFilter::UnstructuredGridExecute()
// Allocate
//
output->Allocate(4*numCells,numCells/2);
newPts = vtkPoints::New();
newPts->Allocate(numPts);
output->SetPoints(newPts);
newPolys = output->GetPolys();
newPolys = vtkCellArray::New();
newPolys->Allocate(4*numCells,numCells/2);
outputPD->CopyAllocate(inputPD, numPts, numPts/2);
outputCD->CopyAllocate(inputCD, numCells, numCells/2);
......@@ -889,8 +888,12 @@ void vtkDataSetSurfaceFilter::UnstructuredGridExecute()
//
cell->Delete();
pts->Delete();
output->SetPoints(newPts);
newPts->Delete();
output->SetPolys(newPolys);
newPolys->Delete();
//free storage
output->Squeeze();
......
......@@ -56,19 +56,13 @@ public:
static vtkStructuredGridOutlineFilter *New();
vtkTypeMacro(vtkStructuredGridOutlineFilter,vtkStructuredGridToPolyDataFilter);
protected:
vtkStructuredGridOutlineFilter() {};
~vtkStructuredGridOutlineFilter() {};
vtkStructuredGridOutlineFilter(const vtkStructuredGridOutlineFilter&);
void operator=(const vtkStructuredGridOutlineFilter&);
int GetNumberOfStreamDivisions();
int ComputeDivisionExtents(vtkDataObject *output, int idx, int NumDivisions);
void StreamExecuteStart();
void Execute();
void ConvertPiece(int piece, int numPieces, int &start, int &end);
};
#endif
......
......@@ -10,6 +10,8 @@ vtkMemoryLimitImageDataStreamer
vtkMultiProcessController
vtkOutputPort
vtkParallelFactory
vtkPDataSetReader
vtkPDataSetWriter
vtkPieceScalars
vtkPipelineSize
vtkPImageWriter
......
/*=========================================================================
Program: Visualization Toolkit
Module: vtkPDataSetReader.cxx
Language: C++
Date: $Date$
Version: $Revision$
Copyright (c) 1993-2001 Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither name of Ken Martin, Will Schroeder, or Bill Lorensen nor the names
of any contributors may be used to endorse or promote products derived
from this software without specific prior written permission.
* Modified source versions must be plainly marked as such, and must not be
misrepresented as being the original software.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
=========================================================================*/
#include "vtkPDataSetReader.h"
#include "vtkDataSetReader.h"
#include "vtkAppendPolyData.h"
#include "vtkAppendFilter.h"
#include "vtkPolyData.h"
#include "vtkUnstructuredGrid.h"
#include "vtkStructuredGrid.h"
#include "vtkRectilinearGrid.h"
#include "vtkImageData.h"
#include "vtkStructuredPoints.h"
#include "vtkObjectFactory.h"
#include "vtkSource.h"
//------------------------------------------------------------------------------
vtkPDataSetReader* vtkPDataSetReader::New()
{
// First try to create the object from the vtkObjectFactory
vtkObject* ret = vtkObjectFactory::CreateInstance("vtkPDataSetReader");
if(ret)
{
return (vtkPDataSetReader*)ret;
}
// If the factory was unable to create the object, then create it here.
return new vtkPDataSetReader;
}
//----------------------------------------------------------------------------
vtkPDataSetReader::vtkPDataSetReader()
{
this->FileName = NULL;
this->VTKFileFlag = 0;
this->NumberOfPieces = 0;
this->DataType = -1;
this->PieceFileNames = NULL;
}
//----------------------------------------------------------------------------
vtkPDataSetReader::~vtkPDataSetReader()
{
this->SetNumberOfPieces(0);
}
//----------------------------------------------------------------------------
void vtkPDataSetReader::SetNumberOfPieces(int num)
{
int i;
if (this->NumberOfPieces == num)
{
return;
}
// Delete the previous file names.
for (i = 0; i < this->NumberOfPieces; ++i)
{
if (this->PieceFileNames[i])
{
delete [] this->PieceFileNames[i];
this->PieceFileNames[i] = NULL;
}
}
if (this->PieceFileNames)
{
delete [] this->PieceFileNames;
this->PieceFileNames = NULL;
}
this->NumberOfPieces = 0;
if (num <= 0)
{
return;
}
// Allocate new arrays
this->PieceFileNames = new char*[num];
for (i = 0; i < num; ++i)
{
this->PieceFileNames[i] = new char[512];
}
this->NumberOfPieces = num;
}
//----------------------------------------------------------------------------
void vtkPDataSetReader::SetOutput(vtkDataSet *output)
{
this->vtkSource::SetNthOutput(0, output);
}
//----------------------------------------------------------------------------
vtkDataSet *vtkPDataSetReader::GetOutput()
{
vtkDataSet *output;
if (this->FileName == NULL)
{
vtkErrorMacro("You need to set the filename before you can get the output");
return NULL;
}
this->ExecuteInformation();
// Creates an output if necessary.
this->CheckOutput();
output = (vtkDataSet *)(this->Outputs[0]);
return output;
}
//----------------------------------------------------------------------------
void vtkPDataSetReader::Update()
{
vtkDataSet *output = this->GetOutput();
if (output)
{
output->Update();
}
}
//----------------------------------------------------------------------------
// This assumes that the DataType is set.
vtkDataSet *vtkPDataSetReader::CheckOutput()
{
vtkDataSet *output = NULL;
vtkDataSet *newOutput;
if (this->Outputs)
{
output = (vtkDataSet *)(this->Outputs[0]);
}
if (output && output->GetDataObjectType() == this->DataType)
{
return output;
}
switch (this->DataType)
{
case VTK_POLY_DATA:
newOutput = vtkPolyData::New();
break;
case VTK_UNSTRUCTURED_GRID:
newOutput = vtkUnstructuredGrid::New();
break;
case VTK_STRUCTURED_GRID:
newOutput = vtkStructuredGrid::New();
break;
case VTK_RECTILINEAR_GRID:
newOutput = vtkRectilinearGrid::New();
break;
case VTK_IMAGE_DATA:
newOutput = vtkImageData::New();
break;
case VTK_STRUCTURED_POINTS:
newOutput = vtkStructuredPoints::New();
break;
default:
vtkErrorMacro("Unknown data type.");
return NULL;
}
if (output)
{
vtkWarningMacro("Creating a new output of type "
<< newOutput->GetClassName());
}
this->SetNthOutput(0, newOutput);
newOutput->Delete();
return newOutput;
}
//----------------------------------------------------------------------------
void vtkPDataSetReader::ExecuteInformation()
{
ifstream *file;
char str[1024];
vtkDataSet *output;
int i;
int dx, dy, dz;
float x, y, z;
file = this->OpenFile();
if (file == NULL)
{
return;
}
file->getline(str, 1024);
str[1023] = '\0';
if (strncmp(str, "<File version=\"pvtk-1.0\"", 24) != 0)
{
// Find out the type from the file.
if (strncmp(str, "# vtk DataFile Version 3.0", 26) != 0)
{
vtkErrorMacro("This does not look like a VTK file: "
<< this->FileName << ", " << str);
file->close();
delete file;
return;
}
// Try to find the line that specifies the dataset type.
i = 0;
while (strncmp(str, "DATASET", 7) != 0 && i < 6)
{
file->getline(str, 1024);
}
if (strncmp(str, "DATASET POLYDATA", 16) == 0)
{
this->DataType = VTK_POLY_DATA;
}
else if (strncmp(str, "DATASET UNSTRUCTURED_GRID", 25) == 0)
{
this->DataType = VTK_UNSTRUCTURED_GRID;
}
else if (strncmp(str, "DATASET STRUCTURED_GRID", 23) == 0)
{
this->DataType = VTK_STRUCTURED_GRID;
vtkStructuredGrid *grid = (vtkStructuredGrid*)(this->CheckOutput());
file->getline(str, 1024, ' ');
if (strncmp(str, "DIMENSIONS", 10) != 0)
{
vtkErrorMacro("Expecting 'DIMENSIONS' insted of: " << str);
file->close();
delete file;
return;
}
*file >> dx;
*file >> dy;
*file >> dz;
grid->SetWholeExtent(0, dx-1, 0, dy-1, 0, dz-1);
}
else if (strncmp(str, "DATASET RECTILINEAR_GRID", 24) == 0)
{
this->DataType = VTK_RECTILINEAR_GRID;
vtkRectilinearGrid *grid = (vtkRectilinearGrid*)(this->CheckOutput());
file->getline(str, 1024, ' ');
if (strncmp(str, "DIMENSIONS", 10) != 0)
{
vtkErrorMacro("Expecting 'DIMENSIONS' insted of: " << str);
file->close();
delete file;
return;
}
*file >> dx;
*file >> dy;
*file >> dz;
grid->SetWholeExtent(0, dx-1, 0, dy-1, 0, dz-1);
}
else if (strncmp(str, "DATASET STRUCTURED_POINTS", 25) == 0)
{
this->DataType = VTK_STRUCTURED_POINTS;
vtkImageData *image = (vtkImageData*)(this->CheckOutput());
file->getline(str, 1024, ' ');
if (strncmp(str, "DIMENSIONS", 10) != 0)
{
vtkErrorMacro("Expecting 'DIMENSIONS' insted of: " << str);
file->close();
delete file;
return;
}
*file >> dx;
*file >> dy;
*file >> dz;
image->SetScalarTypeToFloat();
image->SetWholeExtent(0, dx-1, 0, dy-1, 0, dz-1);
file->getline(str, 1024);
file->getline(str, 1024, ' ');
if (strncmp(str, "SPACING", 7) != 0)
{
vtkErrorMacro("Expecting 'ASPECT_RATIO' insted of: " << str);
file->close();
delete file;
return;
}
*file >> x;
*file >> y;
*file >> z;
image->SetSpacing(x, y, z);
file->getline(str, 1024);
file->getline(str, 1024, ' ');
if (strncmp(str, "ORIGIN", 6) != 0)
{
vtkErrorMacro("Expecting 'ASPECT_RATIO' insted of: " << str);
file->close();
delete file;
return;
}
*file >> x;
*file >> y;
*file >> z;
image->SetOrigin(x, y, z);
}
else
{
vtkErrorMacro("I can not figure out what type of data set this is: " << str);
delete file;
return;
}
file->close();
delete file;
output = this->CheckOutput();
output->SetMaximumNumberOfPieces(1);
this->VTKFileFlag = 1;
return;
}
this->VTKFileFlag = 0;
file->getline(str, 1024);
if (strncmp(str, " datatype=", 15) != 0)
{
vtkErrorMacro("Expecting DataType.");
return;
}
// Take the last quote off.
str[strlen(str)-1] = '\0';
if (strcmp(str+16, "vtkPolyData") == 0)
{
this->DataType = VTK_POLY_DATA;
}
else if (strcmp(str+10, "vtkUnstructuredGrid") == 0)
{
this->DataType = VTK_UNSTRUCTURED_GRID;
}
else if (strcmp(str+10, "vtkstructuredGrid") == 0)
{
this->DataType = VTK_STRUCTURED_GRID;
}
else if (strcmp(str+10, "vtkRectilinearGrid") == 0)
{
this->DataType = VTK_RECTILINEAR_GRID;
}
else if (strcmp(str+10, "vtkImageData") == 0)
{
this->DataType = VTK_IMAGE_DATA;
}
else
{
vtkErrorMacro("Unknown data type " << str+16);
return;
}
// Get output after the DataType is set.
output = this->CheckOutput();
if (output == NULL)
{
return;
}
// Read the number of pieces.
file->getline(str, 1024);
if (strncmp(str, " numberofpieces=", 21) != 0)
{
vtkErrorMacro("Expecting numberofpieces.");
return;
}
// Take the last > off.
str[strlen(str)-2] = '\0';
this->SetNumberOfPieces(atoi(str+21));
output->SetMaximumNumberOfPieces(this->NumberOfPieces);
for (i = 0; i < this->NumberOfPieces; ++i)
{
file->getline(str, 512);
// Take all characters after the quote off.
str[strlen(str)-4] = '\0';
strcpy(this->PieceFileNames[i], str+19);
}
}
//----------------------------------------------------------------------------
ifstream *vtkPDataSetReader::OpenFile()
{
ifstream *file;
if (!this->FileName)
{
vtkErrorMacro(<<"A FileName must be specified.");
return NULL;
}
// Open the new file
file = new ifstream(this->FileName, ios::in);
if (! file || file->fail())
{
vtkErrorMacro(<< "Initialize: Could not open file " << this->FileName);
return NULL;
}
return file;
}
//----------------------------------------------------------------------------
void vtkPDataSetReader::Execute()
{
if (this->VTKFileFlag)
{
vtkDataSet *output;
vtkDataSetReader *reader = vtkDataSetReader::New();
reader->SetFileName(this->FileName);
reader->Update();
vtkDataSet *data = reader->GetOutput();
this->DataType = data->GetDataObjectType();
output = this->CheckOutput();
if (output == NULL)
{
return;
}
output->CopyStructure(data);
output->GetCellData()->PassData(data->GetCellData());
output->GetPointData()->PassData(data->GetPointData());
this->SetNumberOfPieces(0);
reader->Delete();
return;
}
switch (this->DataType)
{
case VTK_POLY_DATA:
this->PolyDataExecute();
break;
case VTK_UNSTRUCTURED_GRID:
this->UnstructuredGridExecute();
break;
default:
vtkErrorMacro("We do not handle structured data yet.");
return;
}
}
//----------------------------------------------------------------------------
void vtkPDataSetReader::PolyDataExecute()
{
// Use out internal method to get the output because GetOutput calls
// UpdateInformation.
vtkPolyData *output = vtkPolyData::SafeDownCast(this->CheckOutput());
int updatePiece, updateNumberOfPieces;
int startPiece, endPiece;
int idx;
if (output == NULL)
{
vtkErrorMacro("Could not create output.");
return;
}
updatePiece = output->GetUpdatePiece();
updateNumberOfPieces = output->GetUpdateNumberOfPieces();
startPiece = updatePiece * this->NumberOfPieces / updateNumberOfPieces;
endPiece = ((updatePiece+1) * this->NumberOfPieces / updateNumberOfPieces) - 1;
if (endPiece < startPiece)
{
return;
}
vtkDataSetReader *reader;
vtkAppendPolyData *append = vtkAppendPolyData::New();
for (idx = startPiece; idx <= endPiece; ++idx)
{
vtkPolyData *tmp;
reader = vtkDataSetReader::New();
reader->SetFileName(this->PieceFileNames[idx]);
tmp = reader->GetPolyDataOutput();
if (tmp && tmp->GetDataObjectType() != VTK_POLY_DATA)
{
vtkWarningMacro("Expecting PolyData in file: " << this->PieceFileNames[idx]);
}
else
{