FillHoles

#include <vtkSmartPointer.h>
#include <vtkFillHolesFilter.h>
#include <vtkPolyDataNormals.h>
#include <vtkCleanPolyData.h>

#include <vtkSelectionNode.h>
#include <vtkInformation.h>
#include <vtkUnstructuredGrid.h>
#include <vtkPolyData.h>
#include <vtkPointData.h>
#include <vtkRenderWindow.h>
#include <vtkRenderWindowInteractor.h>
#include <vtkRenderer.h>
#include <vtkSelection.h>
#include <vtkSelectionNode.h>
#include <vtkSphereSource.h>
#include <vtkPolyDataMapper.h>
#include <vtkActor.h>
#include <vtkCamera.h>
#include <vtkProperty.h>
#include <vtkIdTypeArray.h>
#include <vtkExtractSelection.h>
#include <vtkDataSetSurfaceFilter.h>

#include <vtkBYUReader.h>
#include <vtkOBJReader.h>
#include <vtkPLYReader.h>
#include <vtkPolyDataReader.h>
#include <vtkSTLReader.h>
#include <vtkXMLPolyDataReader.h>
#include <vtkSphereSource.h>
#include <vtksys/SystemTools.hxx>

#include <vtkNamedColors.h>

namespace
{
vtkSmartPointer<vtkPolyData> ReadPolyData(const char *fileName);
}

int main(int argc, char *argv[])
{
  vtkSmartPointer<vtkPolyData> input =
    ReadPolyData(argc > 1 ? argv[1] : "");

  vtkSmartPointer<vtkNamedColors> colors =
    vtkSmartPointer<vtkNamedColors>::New();

  vtkSmartPointer<vtkFillHolesFilter> fillHolesFilter =
    vtkSmartPointer<vtkFillHolesFilter>::New();
  fillHolesFilter->SetInputData(input);
  fillHolesFilter->SetHoleSize(100000.0);
  fillHolesFilter->Update();

  // Make the triangle winding order consistent
  vtkSmartPointer<vtkPolyDataNormals> normals =
    vtkSmartPointer<vtkPolyDataNormals>::New();
  normals->SetInputData(fillHolesFilter->GetOutput());
  normals->ConsistencyOn();
  normals->SplittingOff();
  normals->Update();

#if 0
  // Restore the original normals
  normals->GetOutput()->GetPointData()->
    SetNormals(input->GetPointData()->GetNormals());
#endif
  // Visualize
  // Define viewport ranges
  // (xmin, ymin, xmax, ymax)
  double leftViewport[4] = {0.0, 0.0, 0.5, 1.0};
  double rightViewport[4] = {0.5, 0.0, 1.0, 1.0};

  // Create a mapper and actor
  vtkSmartPointer<vtkPolyDataMapper> originalMapper =
    vtkSmartPointer<vtkPolyDataMapper>::New();
  originalMapper->SetInputData(input);

  vtkSmartPointer<vtkProperty> backfaceProp =
    vtkSmartPointer<vtkProperty>::New();
  backfaceProp->SetDiffuseColor(colors->GetColor3d("Banana").GetData());

  vtkSmartPointer<vtkActor> originalActor =
    vtkSmartPointer<vtkActor>::New();
  originalActor->SetMapper(originalMapper);
  originalActor->SetBackfaceProperty(backfaceProp);
  originalActor->GetProperty()->SetDiffuseColor(
    colors->GetColor3d("Flesh").GetData());

  vtkSmartPointer<vtkPolyDataMapper> filledMapper =
    vtkSmartPointer<vtkPolyDataMapper>::New();
  filledMapper->SetInputData(fillHolesFilter->GetOutput());

  vtkSmartPointer<vtkActor> filledActor =
    vtkSmartPointer<vtkActor>::New();
  filledActor->SetMapper(filledMapper);
  filledActor->GetProperty()->SetDiffuseColor(
    colors->GetColor3d("Flesh").GetData());
  filledActor->SetBackfaceProperty(backfaceProp);

  // Create a renderer, render window, and interactor
  vtkSmartPointer<vtkRenderer> leftRenderer =
    vtkSmartPointer<vtkRenderer>::New();
  leftRenderer->SetViewport(leftViewport);

  vtkSmartPointer<vtkRenderer> rightRenderer =
    vtkSmartPointer<vtkRenderer>::New();
  rightRenderer->SetViewport(rightViewport);

  vtkSmartPointer<vtkRenderWindow> renderWindow =
    vtkSmartPointer<vtkRenderWindow>::New();
  renderWindow->SetSize(600,300);

  renderWindow->AddRenderer(leftRenderer);
  renderWindow->AddRenderer(rightRenderer);

  vtkSmartPointer<vtkRenderWindowInteractor> renderWindowInteractor =
    vtkSmartPointer<vtkRenderWindowInteractor>::New();
  renderWindowInteractor->SetRenderWindow(renderWindow);

  // Add the actor to the scene
  leftRenderer->AddActor(originalActor);
  rightRenderer->AddActor(filledActor);
  leftRenderer->SetBackground(colors->GetColor3d("PaleGreen").GetData());

  leftRenderer->GetActiveCamera()->SetPosition(0, -1, 0);
  leftRenderer->GetActiveCamera()->SetFocalPoint(0, 0, 0);
  leftRenderer->GetActiveCamera()->SetViewUp(0, 0, 1);
  leftRenderer->GetActiveCamera()->Azimuth(30);
  leftRenderer->GetActiveCamera()->Elevation(30);

  leftRenderer->ResetCamera();

  rightRenderer->SetBackground(colors->GetColor3d("LightGreen").GetData());

  // Share the camera

  rightRenderer->SetActiveCamera(leftRenderer->GetActiveCamera());
  // Render and interact
  renderWindow->Render();

  renderWindowInteractor->Start();

  return EXIT_SUCCESS;
}

void GenerateData(vtkPolyData* input)
{
  // Create a sphere
  vtkSmartPointer<vtkSphereSource> sphereSource =
    vtkSmartPointer<vtkSphereSource>::New();
  sphereSource->Update();

  // Remove some cells
  vtkSmartPointer<vtkIdTypeArray> ids =
    vtkSmartPointer<vtkIdTypeArray>::New();
  ids->SetNumberOfComponents(1);

  // Set values
  ids->InsertNextValue(2);
  ids->InsertNextValue(10);

  vtkSmartPointer<vtkSelectionNode> selectionNode =
    vtkSmartPointer<vtkSelectionNode>::New();
  selectionNode->SetFieldType(vtkSelectionNode::CELL);
  selectionNode->SetContentType(vtkSelectionNode::INDICES);
  selectionNode->SetSelectionList(ids);
  selectionNode->GetProperties()->Set(vtkSelectionNode::INVERSE(), 1); //invert the selection

  vtkSmartPointer<vtkSelection> selection =
      vtkSmartPointer<vtkSelection>::New();
  selection->AddNode(selectionNode);

  vtkSmartPointer<vtkExtractSelection> extractSelection =
      vtkSmartPointer<vtkExtractSelection>::New();
  extractSelection->SetInputConnection(0, sphereSource->GetOutputPort());
  extractSelection->SetInputData(1, selection);
  extractSelection->Update();

  // In selection
  vtkSmartPointer<vtkDataSetSurfaceFilter> surfaceFilter =
    vtkSmartPointer<vtkDataSetSurfaceFilter>::New();
  surfaceFilter->SetInputConnection(extractSelection->GetOutputPort());
  surfaceFilter->Update();

  input->ShallowCopy(surfaceFilter->GetOutput());
}
// Snippets
namespace
{
vtkSmartPointer<vtkPolyData> ReadPolyData(const char *fileName)
{
  vtkSmartPointer<vtkPolyData> polyData;
  std::string extension = vtksys::SystemTools::GetFilenameExtension(std::string(fileName));
  if (extension == ".ply")
  {
    vtkSmartPointer<vtkPLYReader> reader =
      vtkSmartPointer<vtkPLYReader>::New();
    reader->SetFileName (fileName);
    reader->Update();
    polyData = reader->GetOutput();
  }
  else if (extension == ".vtp")
  {
    vtkSmartPointer<vtkXMLPolyDataReader> reader =
      vtkSmartPointer<vtkXMLPolyDataReader>::New();
    reader->SetFileName (fileName);
    reader->Update();
    polyData = reader->GetOutput();
  }
  else if (extension == ".obj")
  {
    vtkSmartPointer<vtkOBJReader> reader =
      vtkSmartPointer<vtkOBJReader>::New();
    reader->SetFileName (fileName);
    reader->Update();
    polyData = reader->GetOutput();
  }
  else if (extension == ".stl")
  {
    vtkSmartPointer<vtkSTLReader> reader =
      vtkSmartPointer<vtkSTLReader>::New();
    reader->SetFileName (fileName);
    reader->Update();
    polyData = reader->GetOutput();
  }
  else if (extension == ".vtk")
  {
    vtkSmartPointer<vtkPolyDataReader> reader =
      vtkSmartPointer<vtkPolyDataReader>::New();
    reader->SetFileName (fileName);
    reader->Update();
    polyData = reader->GetOutput();
  }
  else if (extension == ".g")
  {
    vtkSmartPointer<vtkBYUReader> reader =
      vtkSmartPointer<vtkBYUReader>::New();
    reader->SetGeometryFileName (fileName);
    reader->Update();
    polyData = reader->GetOutput();
  }
  else
  {
    vtkSmartPointer<vtkSphereSource> source =
      vtkSmartPointer<vtkSphereSource>::New();
    source->Update();
    polyData = source->GetOutput();
  }
  return polyData;
}
}

cmake_minimum_required(VERSION 2.8)

PROJECT(FillHoles)

find_package(VTK REQUIRED)
include(${VTK_USE_FILE})

add_executable(FillHoles MACOSX_BUNDLE FillHoles.cxx )

target_link_libraries(FillHoles ${VTK_LIBRARIES})

cd FillHoles/build 

cmake ..

cmake -DVTK_DIR:PATH=/home/me/vtk_build ..

make

./FillHoles