project (${WIKI}Medical)

if(NOT WikiExamples_BINARY_DIR)
find_package(VTK REQUIRED)
include(${VTK_USE_FILE})
endif()

set(KIT_LIBS ${VTK_LIBRARIES})

#
# Build all .cxx files in the directory
file(GLOB ALL_FILES *.cxx)

Requires_GitLfs(GenerateModelsFromLabels ALL_FILES)
Requires_GitLfs(GenerateCubesFromLabels ALL_FILES)

foreach(SOURCE_FILE ${ALL_FILES})
  string(REPLACE ".cxx" "" TMP ${SOURCE_FILE})
  string(REPLACE ${CMAKE_CURRENT_SOURCE_DIR}/ "" EXAMPLE ${TMP})
  add_executable(${WIKI}${EXAMPLE} ${EXECUTABLE_FLAG} ${EXAMPLE}.cxx)
  target_link_libraries(${WIKI}${EXAMPLE} ${KIT_LIBS})
endforeach()

if (BUILD_TESTING)
# Testing
set(KIT Medical)
set(NEEDS_ARGS
  GenerateCubesFromLabels
  GenerateModelsFromLabels
  MedicalDemo1
  MedicalDemo2
  MedicalDemo3
  MedicalDemo4
  TissueLens
)
set(DATA ${WikiExamples_SOURCE_DIR}/src/Testing/Data)

if(GIT_LFS)
  add_test(${KIT}-GenerateCubesFromLabels ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${KIT}CxxTests
    TestGenerateCubesFromLabels ${DATA}/Frog/frogtissue.mhd 1 29)

  add_test(${KIT}-GenerateModelsFromLabels ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${KIT}CxxTests
    TestGenerateModelsFromLabels ${DATA}/Frog/frogtissue.mhd 1 29)
endif()

add_test(${KIT}-MedicalDemo1 ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${KIT}CxxTests
  TestMedicalDemo1 ${DATA}/FullHead.mhd)

add_test(${KIT}-MedicalDemo2 ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${KIT}CxxTests
  TestMedicalDemo2 ${DATA}/FullHead.mhd)

add_test(${KIT}-MedicalDemo3 ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${KIT}CxxTests
  TestMedicalDemo3 ${DATA}/FullHead.mhd -E 30)

add_test(${KIT}-MedicalDemo4 ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${KIT}CxxTests
  TestMedicalDemo4 ${DATA}/FullHead.mhd)

add_test(${KIT}-TissueLens ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${KIT}CxxTests
  TestTissueLens ${DATA}/FullHead.mhd)

include(${WikiExamples_SOURCE_DIR}/CMake/ExamplesTesting.cmake)

endif()
