ExtractData

VTKEx/Cxx/VisualizationAlgorithms/ExtractData

Description

This example takes advantage of the properties of implicit functions to select and cut data. In particular it uses the region separation property to select data. Selecting or extracting data with an implicit function means choosing cells and points (and associated attribute data) that lie within a particular region of the function. To determine whether a point x-y-z lies within a region, we simply evaluate the point and examine the sign of the result. A cell lies in a region if all its points lie in the region. Here, two ellipses are used in combination to select voxels within a volume dataset. Note that extracting data often changes the structure of the dataset. In this example the input type is a image data dataset, while the output type is an unstructured grid dataset.

Info

See Figure 6-24 in Chapter 6 the VTK Textbook.

Other languages

See (Python)

Question

If you have a simple question about this example contact us at VTKExProject If your question is more complex and may require extended discussion, please use the VTK Discourse Forum

Code

ExtractData.cxx

#include <vtkActor.h>
#include <vtkCamera.h>
#include <vtkDataSetMapper.h>
#include <vtkExtractGeometry.h>
#include <vtkImplicitBoolean.h>
#include <vtkNamedColors.h>
#include <vtkOutlineFilter.h>
#include <vtkPolyDataMapper.h>
#include <vtkProperty.h>
#include <vtkQuadric.h>
#include <vtkRenderWindow.h>
#include <vtkRenderWindowInteractor.h>
#include <vtkRenderer.h>
#include <vtkSampleFunction.h>
#include <vtkShrinkFilter.h>
#include <vtkSphere.h>
#include <vtkTransform.h>

int main (int, char *[])
{
// extract data
  vtkSmartPointer<vtkNamedColors> colors =
    vtkSmartPointer<vtkNamedColors>::New();

  vtkSmartPointer<vtkRenderer> ren1 =
    vtkSmartPointer<vtkRenderer>::New();

  vtkSmartPointer<vtkRenderWindow> renWin =
    vtkSmartPointer<vtkRenderWindow>::New();
  renWin->AddRenderer(ren1);

  vtkSmartPointer<vtkRenderWindowInteractor> iren =
    vtkSmartPointer<vtkRenderWindowInteractor>::New();
  iren->SetRenderWindow(renWin);

  vtkSmartPointer<vtkQuadric> quadric =
    vtkSmartPointer<vtkQuadric>::New();
  quadric->SetCoefficients(.5, 1, .2, 0, .1, 0, 0, .2, 0, 0);

  vtkSmartPointer<vtkSampleFunction> sample =
    vtkSmartPointer<vtkSampleFunction>::New();
  sample->SetSampleDimensions(50, 50, 50);
  sample->SetImplicitFunction(quadric);
  sample->ComputeNormalsOff();

  vtkSmartPointer<vtkTransform> trans =
    vtkSmartPointer<vtkTransform>::New();
  trans->Scale(1, .5, .333);

  vtkSmartPointer<vtkSphere> sphere =
    vtkSmartPointer<vtkSphere>::New();
  sphere->SetRadius(0.25);
  sphere->SetTransform(trans);

  vtkSmartPointer<vtkTransform> trans2 =
    vtkSmartPointer<vtkTransform>::New();
  trans2->Scale(.25, .5, 1.0);

  vtkSmartPointer<vtkSphere> sphere2 =
    vtkSmartPointer<vtkSphere>::New();
  sphere2->SetRadius(0.25);
  sphere2->SetTransform(trans2);

  vtkSmartPointer<vtkImplicitBoolean> booleanUnion =
    vtkSmartPointer<vtkImplicitBoolean>::New();
  booleanUnion->AddFunction(sphere);
  booleanUnion->AddFunction(sphere2);
  booleanUnion->SetOperationType(0); // boolean Union

  vtkSmartPointer<vtkExtractGeometry> extract =
    vtkSmartPointer<vtkExtractGeometry>::New();
  extract->SetInputConnection(sample->GetOutputPort());
  extract->SetImplicitFunction(booleanUnion);

  vtkSmartPointer<vtkShrinkFilter> shrink =
    vtkSmartPointer<vtkShrinkFilter>::New();
  shrink->SetInputConnection(extract->GetOutputPort());
  shrink->SetShrinkFactor(0.5);

  vtkSmartPointer<vtkDataSetMapper> dataMapper =
    vtkSmartPointer<vtkDataSetMapper>::New();
  dataMapper->SetInputConnection(shrink->GetOutputPort());
  vtkSmartPointer<vtkActor> dataActor =
    vtkSmartPointer<vtkActor>::New();
  dataActor->SetMapper(dataMapper);

// outline
  vtkSmartPointer<vtkOutlineFilter> outline =
    vtkSmartPointer<vtkOutlineFilter>::New();
  outline->SetInputConnection(sample->GetOutputPort());

  vtkSmartPointer<vtkPolyDataMapper> outlineMapper =
    vtkSmartPointer<vtkPolyDataMapper>::New();
  outlineMapper->SetInputConnection(outline->GetOutputPort());

  vtkSmartPointer<vtkActor> outlineActor =
    vtkSmartPointer<vtkActor>::New();
  outlineActor->SetMapper(outlineMapper);
  outlineActor->GetProperty()->SetColor(0, 0, 0);


// Add the actors to the renderer, set the background and size
//
  ren1->AddActor(outlineActor);
  ren1->AddActor(dataActor);

  ren1->SetBackground(colors->GetColor3d("SlateGray").GetData());
  renWin->SetSize(640, 480);
  renWin->Render();
  ren1->GetActiveCamera()->Azimuth(30);
  ren1->GetActiveCamera()->Elevation(30);
  ren1->GetActiveCamera()->Zoom(1.5);

  iren->Start();

  return EXIT_SUCCESS;
}

CMakeLists.txt

cmake_minimum_required(VERSION 3.3 FATAL_ERROR)

project(ExtractData)

find_package(VTK COMPONENTS 
  vtkvtkCommonColor
  vtkvtkCommonDataModel
  vtkvtkCommonTransforms
  vtkvtkFiltersExtraction
  vtkvtkFiltersGeneral
  vtkvtkFiltersModeling
  vtkvtkImagingHybrid
  vtkvtkInteractionStyle
  vtkvtkRenderingContextOpenGL2
  vtkvtkRenderingCore
  vtkvtkRenderingFreeType
  vtkvtkRenderingGL2PSOpenGL2
  vtkvtkRenderingOpenGL2 QUIET)
if (NOT VTK_FOUND)
  message("Skipping ExtractData: ${VTK_NOT_FOUND_MESSAGE}")
  return ()
endif()
message (STATUS "VTK_VERSION: ${VTK_VERSION}")
if (VTK_VERSION VERSION_LESS "8.90.0")
  # old system
  include(${VTK_USE_FILE})
  add_executable(ExtractData MACOSX_BUNDLE ExtractData.cxx )
  target_link_libraries(ExtractData PRIVATE ${VTK_LIBRARIES})
else ()
  # include all components
  add_executable(ExtractData MACOSX_BUNDLE ExtractData.cxx )
  target_link_libraries(ExtractData PRIVATE ${VTK_LIBRARIES})
  # vtk_module_autoinit is needed
  vtk_module_autoinit(
    TARGETS ExtractData
    MODULES ${VTK_LIBRARIES}
    )
endif ()

Download and Build ExtractData

Click here to download ExtractData and its CMakeLists.txt file. Once the tarball ExtractData.tar has been downloaded and extracted,

cd ExtractData/build

If VTK is installed:

cmake ..

If VTK is not installed but compiled on your system, you will need to specify the path to your VTK build:

cmake -DVTK_DIR:PATH=/home/me/vtk_build ..

Build the project:

make

and run it:

./ExtractData

WINDOWS USERS

Be sure to add the VTK bin directory to your path. This will resolve the VTK dll's at run time.