ImageMedian3D

VTKEx/Cxx/Images/ImageMedian3D

Question

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Code

ImageMedian3D.cxx

#include <vtkSmartPointer.h>
#include <vtkImageData.h>
#include <vtkImageCanvasSource2D.h>
#include <vtkImageMedian3D.h>
#include <vtkImageMapper3D.h>
#include <vtkRenderWindow.h>
#include <vtkRenderWindowInteractor.h>
#include <vtkInteractorStyleImage.h>
#include <vtkRenderer.h>
#include <vtkImageActor.h>
#include <vtkImageCast.h>

int main(int, char *[])
{
  // Create an image
  vtkSmartPointer<vtkImageCanvasSource2D> imageSource =
    vtkSmartPointer<vtkImageCanvasSource2D>::New();
  imageSource->SetNumberOfScalarComponents(1);
  imageSource->SetScalarTypeToUnsignedChar();
  unsigned int xmin = 0;
  unsigned int xmax = 20;
  unsigned int ymin = 0;
  unsigned int ymax = 20;
  imageSource->SetExtent(xmin, xmax, ymin, ymax, 0, 0);

  // Make the image all black
  imageSource->SetDrawColor(0.0);
  imageSource->FillBox(xmin, xmax, ymin, ymax);

  // Draw a big white square
  imageSource->SetDrawColor(255.0);
  imageSource->FillBox(5, 15, 5, 15);

  // Add some single white pixels
  imageSource->SetDrawColor(255.0);
  imageSource->FillBox(1, 1, 1, 1);
  imageSource->FillBox(17, 17, 17, 17);

  imageSource->Update();

  vtkSmartPointer<vtkImageMedian3D> medianFilter = 
    vtkSmartPointer<vtkImageMedian3D>::New();
  medianFilter->SetInputConnection(imageSource->GetOutputPort());
  medianFilter->SetKernelSize(3,3,1);
  medianFilter->Update();

  // Create actors
  vtkSmartPointer<vtkImageActor> originalActor =
    vtkSmartPointer<vtkImageActor>::New();
  originalActor->GetMapper()->SetInputConnection(
    imageSource->GetOutputPort());

  vtkSmartPointer<vtkImageActor> medianActor =
    vtkSmartPointer<vtkImageActor>::New();
  medianActor->GetMapper()->SetInputConnection(
    medianFilter->GetOutputPort());

  // Define viewport ranges
  // (xmin, ymin, xmax, ymax)
  double leftViewport[4] = {0.0, 0.0, 0.5, 1.0};
  double rightViewport[4] = {0.5, 0.0, 1.0, 1.0};

  // Setup renderers
  vtkSmartPointer<vtkRenderer> originalRenderer =
    vtkSmartPointer<vtkRenderer>::New();
  originalRenderer->SetViewport(leftViewport);
  originalRenderer->AddActor(originalActor);
  originalRenderer->ResetCamera();
  originalRenderer->SetBackground(.4, .5, .6);

  vtkSmartPointer<vtkRenderer> gradientMagnitudeRenderer =
    vtkSmartPointer<vtkRenderer>::New();
  gradientMagnitudeRenderer->SetViewport(rightViewport);
  gradientMagnitudeRenderer->AddActor(medianActor);
  gradientMagnitudeRenderer->ResetCamera();
  gradientMagnitudeRenderer->SetBackground(.4, .5, .7);

  vtkSmartPointer<vtkRenderWindow> renderWindow =
    vtkSmartPointer<vtkRenderWindow>::New();
  renderWindow->SetSize(600, 300);
  renderWindow->AddRenderer(originalRenderer);
  renderWindow->AddRenderer(gradientMagnitudeRenderer);

  vtkSmartPointer<vtkRenderWindowInteractor> renderWindowInteractor =
    vtkSmartPointer<vtkRenderWindowInteractor>::New();
  vtkSmartPointer<vtkInteractorStyleImage> style =
    vtkSmartPointer<vtkInteractorStyleImage>::New();

  renderWindowInteractor->SetInteractorStyle(style);

  renderWindowInteractor->SetRenderWindow(renderWindow);
  renderWindow->Render();
  renderWindowInteractor->Initialize();

  renderWindowInteractor->Start();

  return EXIT_SUCCESS;
}

CMakeLists.txt

cmake_minimum_required(VERSION 3.3 FATAL_ERROR)

project(ImageMedian3D)

find_package(VTK COMPONENTS 
  vtkvtkCommonCore
  vtkvtkCommonDataModel
  vtkvtkImagingCore
  vtkvtkImagingGeneral
  vtkvtkImagingSources
  vtkvtkInteractionStyle
  vtkvtkRenderingContextOpenGL2
  vtkvtkRenderingCore
  vtkvtkRenderingFreeType
  vtkvtkRenderingGL2PSOpenGL2
  vtkvtkRenderingOpenGL2 QUIET)
if (NOT VTK_FOUND)
  message("Skipping ImageMedian3D: ${VTK_NOT_FOUND_MESSAGE}")
  return ()
endif()
message (STATUS "VTK_VERSION: ${VTK_VERSION}")
if (VTK_VERSION VERSION_LESS "8.90.0")
  # old system
  include(${VTK_USE_FILE})
  add_executable(ImageMedian3D MACOSX_BUNDLE ImageMedian3D.cxx )
  target_link_libraries(ImageMedian3D PRIVATE ${VTK_LIBRARIES})
else ()
  # include all components
  add_executable(ImageMedian3D MACOSX_BUNDLE ImageMedian3D.cxx )
  target_link_libraries(ImageMedian3D PRIVATE ${VTK_LIBRARIES})
  # vtk_module_autoinit is needed
  vtk_module_autoinit(
    TARGETS ImageMedian3D
    MODULES ${VTK_LIBRARIES}
    )
endif ()

Download and Build ImageMedian3D

Click here to download ImageMedian3D and its CMakeLists.txt file. Once the tarball ImageMedian3D.tar has been downloaded and extracted,

cd ImageMedian3D/build

If VTK is installed:

cmake ..

If VTK is not installed but compiled on your system, you will need to specify the path to your VTK build:

cmake -DVTK_DIR:PATH=/home/me/vtk_build ..

Build the project:

make

and run it:

./ImageMedian3D

WINDOWS USERS

Be sure to add the VTK bin directory to your path. This will resolve the VTK dll's at run time.