diy Namespace Reference

Namespaces
	mpi

Classes
class	Assigner
class	ContiguousAssigner
class	RoundRobinAssigner
class	Collection
class	resource_accessor
class	critical_resource
struct	RegularDecomposer
	Decomposes a regular (discrete or continuous) domain into even blocks; creates Links with Bounds along the way. More...
struct	Grid
struct	GridRef
struct	Serialization< io::detail::GidOffsetCount >
class	Link
class	RegularLink
struct	RegularLinkSelector
struct	RegularLinkSelector< DiscreteBounds >
struct	RegularLinkSelector< ContinuousBounds >
struct	LinkFactory
class	Master
struct	thread
struct	mutex
struct	fast_mutex
struct	recursive_mutex
struct	lock_guard
struct	RegularAllReducePartners
	Allreduce (reduction with results broadcasted to all blocks) is implemented as two merge reductions, with incoming and outgoing items swapped in second one. Ie, follows merge reduction up and down the merge tree. More...
struct	RegularBroadcastPartners
	Partners for broadcast. More...
struct	RegularPartners
struct	RegularMergePartners
	Partners for merge-reduce. More...
struct	RegularSwapPartners
	Partners for swap-reduce. More...
class	Point
struct	ReduceProxy
	Enables communication within a group during a reduction. DIY creates the ReduceProxy for you in diy::reduce() and provides a reference to ReduceProxy each time the user's reduction function is called. More...
struct	BinaryBuffer
	A serialization buffer. More...
struct	MemoryBuffer
struct	Serialization
	Main interface to serialization, meant to be specialized for the types that require special handling. diy::save() and diy::load() call the static member functions of this class. More...
struct	Serialization< MemoryBuffer >
struct	Serialization< std::vector< U > >
struct	Serialization< std::valarray< U > >
struct	Serialization< std::string >
struct	Serialization< std::pair< X, Y > >
struct	Serialization< std::map< K, V > >
struct	Serialization< std::set< T > >
struct	Serialization< std::unordered_map< K, V, H, E, A > >
struct	Serialization< std::unordered_set< T, H, E, A > >
struct	Serialization< std::tuple< Args...> >
class	ExternalStorage
class	FileStorage
struct	BlockID
struct	Bounds
struct	Direction
struct	BoundsValue

Typedefs
typedef mpi::communicator	Communicator
typedef RegularLink < DiscreteBounds >	RegularGridLink
typedef RegularLink < ContinuousBounds >	RegularContinuousLink
using	fast_mutex = tthread::fast_mutex
template<class Mutex >
using	lock_guard = std::unique_lock< Mutex >
typedef unsigned long	time_type
using	DiscreteBounds = Bounds< int >
using	ContinuousBounds = Bounds< float >

Functions
template<class Block , class T , class Cmp >
void	sort (Master &master, const Assigner &assigner, std::vector< T > Block::*values, std::vector< T > Block::*samples, size_t num_samples, const Cmp &cmp, int k=2, bool samples_only=false)
	sample sort values of each block, store the boundaries between blocks in samples More...
template<class Block , class T >
void	sort (Master &master, const Assigner &assigner, std::vector< T > Block::*values, std::vector< T > Block::*samples, size_t num_samples, int k=2)
	sample sort values of each block, store the boundaries between blocks in samples shorter version of above sort algorithm with the default less-than comparator used for T and all_to_all exchange included More...
template<class Block , class Point >
void	kdtree (Master &master, const Assigner &assigner, int dim, const ContinuousBounds &domain, std::vector< Point > Block::*points, size_t bins, bool wrap=false)
	build a kd-tree and sort a set of points into it (use histograms to determine split values) More...
template<class Block , class Point >
void	kdtree_sampling (Master &master, const Assigner &assigner, int dim, const ContinuousBounds &domain, std::vector< Point > Block::*points, size_t samples, bool wrap=false)
	build a kd-tree and sort a set of points into it (use sampling to determine split values) More...
template<class Bounds >
void	decompose (int dim, int rank, const Bounds &domain, const Assigner &assigner, const typename RegularDecomposer< Bounds >::Creator &create, typename RegularDecomposer< Bounds >::BoolVector share_face=typename RegularDecomposer< Bounds >::BoolVector(), typename RegularDecomposer< Bounds >::BoolVector wrap=typename RegularDecomposer< Bounds >::BoolVector(), typename RegularDecomposer< Bounds >::CoordinateVector ghosts=typename RegularDecomposer< Bounds >::CoordinateVector(), typename RegularDecomposer< Bounds >::DivisionsVector divs=typename RegularDecomposer< Bounds >::DivisionsVector())
	Decomposes the domain into a prescribed pattern of blocks. More...
template<class Bounds >
void	decompose (int dim, int rank, const Bounds &domain, const Assigner &assigner, Master &master, typename RegularDecomposer< Bounds >::BoolVector share_face=typename RegularDecomposer< Bounds >::BoolVector(), typename RegularDecomposer< Bounds >::BoolVector wrap=typename RegularDecomposer< Bounds >::BoolVector(), typename RegularDecomposer< Bounds >::CoordinateVector ghosts=typename RegularDecomposer< Bounds >::CoordinateVector(), typename RegularDecomposer< Bounds >::DivisionsVector divs=typename RegularDecomposer< Bounds >::DivisionsVector())
	Decomposes the domain into a prescribed pattern of blocks. More...
void	decompose (int rank, const Assigner &assigner, Master &master)
	A "null" decompositon that simply creates the blocks and adds them to the master. More...
template<class Bounds >
void	decompose (int dim, int rank, const Bounds &domain, const Assigner &assigner, Master &master, const typename RegularDecomposer< Bounds >::Updater &update, typename RegularDecomposer< Bounds >::BoolVector share_face=typename RegularDecomposer< Bounds >::BoolVector(), typename RegularDecomposer< Bounds >::BoolVector wrap=typename RegularDecomposer< Bounds >::BoolVector(), typename RegularDecomposer< Bounds >::CoordinateVector ghosts=typename RegularDecomposer< Bounds >::CoordinateVector(), typename RegularDecomposer< Bounds >::DivisionsVector divs=typename RegularDecomposer< Bounds >::DivisionsVector())
	Add a decomposition (modify links) of an existing set of blocks that were added to the master previously. More...
std::shared_ptr< spd::logger >	get_logger ()
std::shared_ptr< spd::logger >	create_logger (std::string)
template<class... Args>
std::shared_ptr< spd::logger >	set_logger (Args...args)
template<class Bounds , class Point , class OutIter >
void	near (const RegularLink< Bounds > &link, const Point &p, float r, OutIter out, const Bounds &domain)
	Finds the neighbors within radius r of a target point. More...
template<class Bounds , class Point , class OutIter >
void	in (const RegularLink< Bounds > &link, const Point &p, OutIter out, const Bounds &domain)
	Finds the neighbor(s) containing the target point. More...
template<class Point , class Bounds >
float	distance (int dim, const Bounds &bounds, const Point &p)
	Find the distance between point p and box bounds.
template<class Bounds >
float	distance (int dim, const Bounds &bounds1, const Bounds &bounds2)
template<class Bounds >
void	wrap_bounds (Bounds &bounds, Direction wrap_dir, const Bounds &domain, int dim)
template<class Coordinate , unsigned D>
Coordinate	norm2 (const Point< Coordinate, D > &p)
template<class C , unsigned D>
std::ostream &	operator<< (std::ostream &out, const Point< C, D > &p)
template<class C , unsigned D>
std::istream &	operator>> (std::istream &in, Point< C, D > &p)
template<class Op >
void	all_to_all (Master &master, const Assigner &assigner, const Op &op, int k=2)
	all to all reduction More...
template<class Reduce , class Partners , class Skip >
void	reduce (Master &master, const Assigner &assigner, const Partners &partners, const Reduce &reduce, const Skip &skip)
	Implementation of the reduce communication pattern (includes swap-reduce, merge-reduce, and any other global communication). More...
template<class Reduce , class Partners >
void	reduce (Master &master, const Assigner &assigner, const Partners &partners, const Reduce &reducer)
	Implementation of the reduce communication pattern (includes swap-reduce, merge-reduce, and any other global communication). More...
template<class T >
void	save (BinaryBuffer &bb, const T &x)
	Saves x to bb by calling diy::Serialization<T>::save(bb,x).
template<class T >
void	load (BinaryBuffer &bb, T &x)
	Loads x from bb by calling diy::Serialization<T>::load(bb,x).
template<class T >
void	save (BinaryBuffer &bb, const T *x, size_t n)
	Optimization for arrays. If diy::Serialization is not specialized for T, the array will be copied all at once. Otherwise, it's copied element by element.
template<class T >
void	load (BinaryBuffer &bb, T *x, size_t n)
	Optimization for arrays. If diy::Serialization is not specialized for T, the array will be filled all at once. Otherwise, it's filled element by element.
template<class T >
void	load_back (BinaryBuffer &bb, T &x)
	Supports only binary data copying (meant for simple footers).
time_type	get_time ()
diy::DiscreteBounds	interval (int from, int to)
	Helper to create a 1-dimensional discrete domain with the specified extents.
bool	operator< (const diy::BlockID &x, const diy::BlockID &y)
bool	operator== (const diy::BlockID &x, const diy::BlockID &y)
template<class Vertex , class Callback >
void	for_each (const Vertex &from, const Vertex &to, const Callback &callback)
template<class Vertex , class Callback >
void	for_each (const Vertex &shape, const Callback &callback)

Detailed Description

All classes and functions are declared inside this namespace.

<utils/traits.hpp> — Additional type traits

This module provides additional type traits and related functions, missing from the standard library.

Function Documentation

template<class Bounds , class Point , class OutIter >

void diy::in	(	const RegularLink< Bounds > &	link,
		const Point &	p,
		OutIter	out,
		const Bounds &	domain
	)

Finds the neighbor(s) containing the target point.

Parameters

link	neighbors
p	target point
out	insert iterator for output set of neighbors
domain	global domain bounds

template<class Bounds , class Point , class OutIter >

void diy::near	(	const RegularLink< Bounds > &	link,
		const Point &	p,
		float	r,
		OutIter	out,
		const Bounds &	domain
	)

Finds the neighbors within radius r of a target point.

Parameters

link	neighbors
p	target point (must be in current block)
r	target radius (>= 0.0)
out	insert iterator for output set of neighbors
domain	global domain bounds