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databases after recent xml2cmake regeneration



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Switch to Jeremy's logic to detect "fully disconnected" case to trigger disjoint mesh connection logic.


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Fix issues with group ids in SimReader, was causing a crash with the csg simulation.  Resolves #1873.

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Added logic to remove duplicate nodes in unstructured grids when conditions merit (for CharlesX code).
Called FreeUpResources after PopulateMD on all MPI-ranks.
Made FreeUpResources delete/reset everything even VTK datasets.
Ensured ReadInFile will read specific domain needed to this mpi-rank where possible.


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