Update from January 5, 2005

git-svn-id: http://visit.ilight.com/svn/visit/trunk/src@390 18c085ea-50e0-402c-830e-de6fd14e8384

clearcase_bin/visit-build-open

@@ -53,7 +53,6 @@ kickit=true
 sunspot=true
 hyper=true
 gps=true
-riptide=true
 berg=true
 pengra=true
 thunder=true
@@ -73,7 +72,6 @@ do
          sunspot=false
          hyper=false
          gps=false
-         riptide=false
          berg=false
          pengra=false
          thunder=false
@@ -111,14 +109,6 @@ do
          gps=true
          shift
          ;;
-      -riptide)
-         riptide=false
-         shift
-         ;;
-      +riptide)
-         riptide=true
-         shift
-         ;;
       -berg)
          berg=false
          shift
@@ -369,56 +359,6 @@ then
    fi
 fi
 
-#
-# Build on riptide, both serial and parallel versions.
-#
-rm -f riptide
-cat <<EOF > riptide
-#!/bin/sh
-if test ! -e /fc/tmp0/fcdata/$user ; then
-   mkdir /fc/tmp0/fcdata/$user
-fi
-if test ! -e /fc/tmp0/fcdata/$user/riptide ; then
-   mkdir /fc/tmp0/fcdata/$user/riptide
-fi
-rm -rf /fc/tmp0/fcdata/$user/riptide/visitbuild
-mkdir /fc/tmp0/fcdata/$user/riptide/visitbuild
-mv riptide_$dist.tar.gz /fc/tmp0/fcdata/$user/riptide/visitbuild/$dist.tar.gz
-cd /fc/tmp0/fcdata/$user/riptide/visitbuild
-gunzip -c $dist.tar.gz | tar xvf - > buildlog 2>&1
-cd $dist
-ver=\`cat VERSION\`
-ver2=\`echo \$ver | tr "." "_"\`
-env CXXFLAGS=-O2 ./configure --enable-parallel >> ../buildlog 2>&1
-env PARALLEL=8 make -P >> ../buildlog 2>&1
-clearcase_bin/visit-bin-dist >> ../buildlog 2>&1
-mv visit\$ver2.irix6.tar.gz ..
-cd ..
-rm -f resultlog
-echo "        build of visit on riptide"      > resultlog 2>&1
-echo "       ---------------------------"     >> resultlog 2>&1
-echo ""                                       >> resultlog 2>&1
-ls -l                                         >> resultlog 2>&1
-echo ""                                       >> resultlog 2>&1
-echo "number of database plugins = "\`ls $dist/plugins/databases/libI* | wc -l\` >> resultlog 2>&1
-echo "number of operator plugins = "\`ls $dist/plugins/operators/libI* | wc -l\` >> resultlog 2>&1
-echo "number of plot plugins = "\`ls $dist/plugins/plots/libI* | wc -l\` >> resultlog 2>&1
-echo ""                                       >> resultlog 2>&1
-echo "The database plugins:"                  >> resultlog 2>&1
-ls $dist/plugins/databases/libI* | sed "s/$dist\/plugins\/databases\/libI//" | sed "s/Database.so//" >> resultlog 2>&1
-mail $emailName < resultlog
-EOF
-
-if [ $riptide = true ]
-then
-   if [ $test = no ]
-   then
-      scp riptide riptide:riptide_buildit
-      scp $dist.tar.gz riptide:riptide_$dist.tar.gz
-      ssh riptide "chmod 750 riptide_buildit;./riptide_buildit" &
-   fi
-fi
-
 #
 # Build on berg, both serial and parallel versions.
 #
@@ -574,5 +514,5 @@ fi
 #
 if [ $test = no ]
 then
-   rm -f kickit sunspot hyper gps riptide berg pengra thunder
+   rm -f kickit sunspot hyper gps berg pengra thunder
 fi

clearcase_bin/visit-install-open

@@ -54,7 +54,6 @@ kickit=true
 sunspot=true
 hyper=true
 gps=true
-riptide=true
 berg=true
 pengra=true
 alc=true
@@ -76,7 +75,6 @@ do
          sunspot=false
          hyper=false
          gps=false
-         riptide=false
          berg=false
          pengra=false
          alc=false
@@ -115,14 +113,6 @@ do
          gps=true
          shift
          ;;
-      -riptide)
-         riptide=false
-         shift
-         ;;
-      +riptide)
-         riptide=true
-         shift
-         ;;
       -berg)
          berg=false
          shift
@@ -295,7 +285,7 @@ if [ $hyper = true ]
 then
    if [ $test = no ]
    then
-      scp riptide:/fc/tmp0/fcdata/$user/riptide/visitbuild/visit$ver2.irix6.tar.gz .
+      scp hyper:/scratch1/$user/hyper/visitbuild/visit$ver2.irix6.tar.gz .
       scp visit$ver2.irix6.tar.gz kickit:
       scp visit-install kickit:
       scp hyper kickit:hyper_install
@@ -339,42 +329,6 @@ then
    fi
 fi
 
-#
-# Install on riptide.
-#
-rm -f riptide
-cat <<EOF > riptide
-#!/bin/sh
-./visit-install -private -c open -g visit -gw -l $ver irix6 /usr/gapps/visit > installlog 2>&1
-rm -f resultlog
-echo "        install of visit on riptide"         > resultlog 2>&1
-echo "       -----------------------------"        >> resultlog 2>&1
-echo ""                                            >> resultlog 2>&1
-df -k /usr/gapps/visit                             >> resultlog 2>&1
-echo ""                                            >> resultlog 2>&1
-ls -l /usr/gapps/visit/$ver/sgi-irix6-mips2/bin    >> resultlog 2>&1
-echo ""                                            >> resultlog 2>&1
-echo "number of database plugins = "\`ls /usr/gapps/visit/$ver/sgi-irix6-mips2/plugins/databases/libI* | wc -l\` >> resultlog 2>&1
-echo "number of operator plugins = "\`ls /usr/gapps/visit/$ver/sgi-irix6-mips2/plugins/operators/libI* | wc -l\` >> resultlog 2>&1
-echo "number of plot plugins = "\`ls /usr/gapps/visit/$ver/sgi-irix6-mips2/plugins/plots/libI* | wc -l\` >> resultlog 2>&1
-echo ""                                            >> resultlog 2>&1
-echo "The database plugins:"                       >> resultlog 2>&1
-ls /usr/gapps/visit/$ver/sgi-irix6-mips2/plugins/databases/libI* | sed "s/\/usr\/gapps\/visit\/$ver\/sgi-irix6-mips2\/plugins\/databases\/libI//" | sed "s/Database.so//" >> resultlog 2>&1
-mail $emailName < resultlog
-EOF
-
-if [ $riptide = true ]
-then
-   if [ $test = no ]
-   then
-      scp riptide:/fc/tmp0/fcdata/$user/riptide/visitbuild/visit$ver2.irix6.tar.gz .
-      scp visit$ver2.irix6.tar.gz gps15:
-      scp visit-install gps15:
-      scp riptide gps15:riptide_install
-      ssh gps15 "chmod 750 riptide_install;./riptide_install"
-   fi
-fi
-
 #
 # Install on berg.
 #
@@ -532,5 +486,5 @@ fi
 #
 if [ $test = no ]
 then
-   rm -f kickit sunspot hyper gps riptide berg pengra alc thunder
+   rm -f kickit sunspot hyper gps berg pengra alc thunder
 fi

components/Filters/avtRayTracer.C

@@ -333,7 +333,7 @@ avtRayTracer::Execute(void)
     int sampLimitPerProc = 25000000; // 25M
     numSamps /= PAR_Size();
     int numTiles = numSamps/sampLimitPerProc;
-    int numDivisions = (int) sqrt(numTiles);
+    int numDivisions = (int) sqrt((double) numTiles);
     if (numDivisions < 1)
         numDivisions = 1;
     int IStep = screen[0] / numDivisions;

config-site/AIX.conf

@@ -11,7 +11,7 @@ fi
 ##
 ## Set g++ specific flags.
 ##
-if test "$CXX" = "g++"; then
+if test "`echo $CXX | cut -c1-3`" = "g++"; then
     ##
     ## Minimize the size of the table of contents (TOC).  Other flags that
     ## reduce the size of the TOC are -mno-fp-in-toc and -mno-sum-in-toc
@@ -23,7 +23,7 @@ if test "$CXX" = "g++"; then
     ##
     LDFLAGS="-Wl,-brtl $LDFLAGS"
 
-elif test "$CXX" = "xlC"; then
+else ## Assume $CXX = xlC
     ##
     ## Tell it to look for .so's as libraries, and to link using shared semantics.
     ##

config-site/OSF1.conf

@@ -8,6 +8,6 @@
 if test "`uname -p`"="alpha"; then
    if test "X$CC" = "X"; then
       CC="/usr/bin/cc"
+      CFLAGS="-std1 $CFLAGS"
    fi
-   CFLAGS="-std1 $CFLAGS"
 fi

config-site/pvc6.conf

+##
+## Set the VISITHOME environment variable.
+##
+VISITHOME=/usr/gapps/visit
+
+##
+## Use the g++ 3.2.3 compiler.
+##
+CC=/usr/local/bin/gcc-3.2.3
+CXX=/usr/local/bin/g++-3.2.3
+
+##
+## If MESA is not set, use VisIt's mesa.
+##
+if test -z "$MESA"; then
+    MESA=$VISITHOME/mesa/5.0/linux_chaos_gcc_3.3.3
+fi
+
+##
+## If VTK is not set, use VisIt's vtk.
+##
+if test -z "$VTK"; then
+    VTK=$VISITHOME/vtk/2003.10.28/linux_chaos_gcc_3.3.3
+fi
+
+##
+## If QT is not set, use VisIt's Qt.
+##
+if test -z "$QT_BIN"; then
+   QT_BIN=$VISITHOME/qt/3.3.2/linux_chaos_gcc_3.3.3/bin
+fi
+if test -z "$QT_INCLUDE"; then
+   QT_INCLUDE=$VISITHOME/qt/3.3.2/linux_chaos_gcc_3.3.3/include
+fi
+if test -z "$QT_LIB"; then
+   QT_LIB=$VISITHOME/qt/3.3.2/linux_chaos_gcc_3.3.3/lib
+fi
+
+##
+## Use VisIt's Python.
+##
+PYDIR=$VISITHOME/python/linux_chaos_gcc_3.3.3
+PYVERSION=python2.1
+
+##
+## Turn off warnings for deprecated features.
+##
+CXXFLAGS="-Wno-deprecated $CXXFLAGS"
+
+##
+## Add parallel arguments.
+##
+CXXFLAGS="-I/usr/lib/mpi/mpi_gnu/include $CXXFLAGS"
+MPI_LIBS="-L/usr/lib/mpi/mpi_gnu/lib -Wl,-rpath=/usr/lib/mpi/mpi_gnu/lib -lmpi -lelan -lelan3 -lrmscall"
+
+##
+## Database reader plugin support libraries
+##
+###############################################################################
+
+##
+## Boxlib
+##
+DEFAULT_BOXLIB2D_INCLUDE=/usr/gapps/visit/boxlib/linux_chaos_gcc_3.3.3/include/2D
+DEFAULT_BOXLIB2D_LIBS=/usr/gapps/visit/boxlib/linux_chaos_gcc_3.3.3/lib
+DEFAULT_BOXLIB3D_INCLUDE=/usr/gapps/visit/boxlib/linux_chaos_gcc_3.3.3/include/3D
+DEFAULT_BOXLIB3D_LIBS=/usr/gapps/visit/boxlib/linux_chaos_gcc_3.3.3/lib
+
+##
+## Exodus
+##
+DEFAULT_EXODUS_INCLUDES=$VISITHOME/exodus/linux/inc
+DEFAULT_EXODUS_LIBRARY=$VISITHOME/exodus/linux/lib
+
+##
+## HDF4
+##
+DEFAULT_HDF4_FLAGS=/usr/gapps/visit/hdf4/2.0/linux_chaos_gcc_3.3.3/include
+DEFAULT_HDF4_LIBS=/usr/gapps/visit/hdf4/2.0/linux_chaos_gcc_3.3.3/lib
+
+##
+## HDF5
+##
+DEFAULT_HDF5_INCLUDE=/usr/local/hdf5/hdf5-1.6.0_chaos_2.0/serial_gcc/include
+DEFAULT_HDF5_LIB=/usr/local/hdf5/hdf5-1.6.0_chaos_2.0/serial_gcc/lib
+
+##
+## Mili
+##
+MILI_DIR=/usr/gapps/visit/mili/current/linux_chaos_gcc_3.3.3
+
+##
+## Silo
+##
+DEFAULT_SILO_INCLUDES=/usr/gapps/silo/4.4.1/chaos_2_ia32_elan3/include
+DEFAULT_SILO_LIBRARY=/usr/gapps/silo/4.4.1/chaos_2_ia32_elan3/lib

config-site/pvc7.conf

+##
+## Set the VISITHOME environment variable.
+##
+VISITHOME=/usr/gapps/visit
+
+##
+## Use the g++ 3.2.3 compiler.
+##
+CC=/usr/local/bin/gcc-3.2.3
+CXX=/usr/local/bin/g++-3.2.3
+
+##
+## If MESA is not set, use VisIt's mesa.
+##
+if test -z "$MESA"; then
+    MESA=$VISITHOME/mesa/5.0/linux_chaos_gcc_3.3.3
+fi
+
+##
+## If VTK is not set, use VisIt's vtk.
+##
+if test -z "$VTK"; then
+    VTK=$VISITHOME/vtk/2003.10.28/linux_chaos_gcc_3.3.3
+fi
+
+##
+## If QT is not set, use VisIt's Qt.
+##
+if test -z "$QT_BIN"; then
+   QT_BIN=$VISITHOME/qt/3.3.2/linux_chaos_gcc_3.3.3/bin
+fi
+if test -z "$QT_INCLUDE"; then
+   QT_INCLUDE=$VISITHOME/qt/3.3.2/linux_chaos_gcc_3.3.3/include
+fi
+if test -z "$QT_LIB"; then
+   QT_LIB=$VISITHOME/qt/3.3.2/linux_chaos_gcc_3.3.3/lib
+fi
+
+##
+## Use VisIt's Python.
+##
+PYDIR=$VISITHOME/python/linux_chaos_gcc_3.3.3
+PYVERSION=python2.1
+
+##
+## Turn off warnings for deprecated features.
+##
+CXXFLAGS="-Wno-deprecated $CXXFLAGS"
+
+##
+## Add parallel arguments.
+##
+CXXFLAGS="-I/usr/lib/mpi/mpi_gnu/include $CXXFLAGS"
+MPI_LIBS="-L/usr/lib/mpi/mpi_gnu/lib -Wl,-rpath=/usr/lib/mpi/mpi_gnu/lib -lmpi -lelan -lelan3 -lrmscall"
+
+##
+## Database reader plugin support libraries
+##
+###############################################################################
+
+##
+## Boxlib
+##
+DEFAULT_BOXLIB2D_INCLUDE=/usr/gapps/visit/boxlib/linux_chaos_gcc_3.3.3/include/2D
+DEFAULT_BOXLIB2D_LIBS=/usr/gapps/visit/boxlib/linux_chaos_gcc_3.3.3/lib
+DEFAULT_BOXLIB3D_INCLUDE=/usr/gapps/visit/boxlib/linux_chaos_gcc_3.3.3/include/3D
+DEFAULT_BOXLIB3D_LIBS=/usr/gapps/visit/boxlib/linux_chaos_gcc_3.3.3/lib
+
+##
+## Exodus
+##
+DEFAULT_EXODUS_INCLUDES=$VISITHOME/exodus/linux/inc
+DEFAULT_EXODUS_LIBRARY=$VISITHOME/exodus/linux/lib
+
+##
+## HDF4
+##
+DEFAULT_HDF4_FLAGS=/usr/gapps/visit/hdf4/2.0/linux_chaos_gcc_3.3.3/include
+DEFAULT_HDF4_LIBS=/usr/gapps/visit/hdf4/2.0/linux_chaos_gcc_3.3.3/lib
+
+##
+## HDF5
+##
+DEFAULT_HDF5_INCLUDE=/usr/local/hdf5/hdf5-1.6.0_chaos_2.0/serial_gcc/include
+DEFAULT_HDF5_LIB=/usr/local/hdf5/hdf5-1.6.0_chaos_2.0/serial_gcc/lib
+
+##
+## Mili
+##
+MILI_DIR=/usr/gapps/visit/mili/current/linux_chaos_gcc_3.3.3
+
+##
+## Silo
+##
+DEFAULT_SILO_INCLUDES=/usr/gapps/silo/4.4.1/chaos_2_ia32_elan3/include
+DEFAULT_SILO_LIBRARY=/usr/gapps/silo/4.4.1/chaos_2_ia32_elan3/lib

config-site/riptide.llnl.gov.conf

-##
-## Set the VISITHOME environment variable.
-##
-VISITHOME=/usr/gapps/visit
-
-##
-## If MESA is not set, use VisIt's mesa.
-##
-if test -z "$MESA"; then
-    MESA=$VISITHOME/mesa/5.0/irix64_cc_7.3.1.2_64
-fi
-
-##
-## If VTK is not set, use VisIt's vtk.
-##
-if test -z "$VTK"; then
-    VTK=$VISITHOME/vtk/2003.10.28/irix64_cc_7.3.1.2_64
-fi
-
-##
-## If QT is not set, use VisIt's Qt.
-##
-if test -z "$QT_BIN"; then
-   QT_BIN=$VISITHOME/qt/3.3.2/irix64_cc_7.3.1.2_64/bin
-fi
-if test -z "$QT_INCLUDE"; then
-   QT_INCLUDE=$VISITHOME/qt/3.3.2/irix64_cc_7.3.1.2_64/include
-fi
-if test -z "$QT_LIB"; then
-   QT_LIB=$VISITHOME/qt/3.3.2/irix64_cc_7.3.1.2_64/lib
-fi
-
-##
-## Use VisIt's Python
-##
-PYDIR=$VISITHOME/python/irix64_cc_7.3.1.2_64
-PYVERSION=python2.1
-PY_LDFLAGS="-64"
-
-##
-## Make a 64 bit binary
-##
-CFLAGS="-64 -G 7 -OPT:Olimit=0 $CFLAGS"
-CXXFLAGS="-64 -LANG:std -G 7 -OPT:Olimit=0 $CXXFLAGS"
-LDFLAGS="-64 -LANG:std -G 7 -OPT:Olimit=0 $LDFLAGS"
-
-##
-## Report all warnings.
-##
-CFLAGS="-fullwarn -woff 1424 $CFLAGS"
-CXXFLAGS="-fullwarn -woff 1424 $CXXFLAGS"
-
-##
-## Add parallel arguments.
-##
-MPI_LIBS="-lmpi -lmpi++"
-
-##
-## Database reader plugin support libraries
-##
-###############################################################################
-
-##
-## HDF5
-##
-DEFAULT_HDF5_INCLUDE=/usr/local/hdf5/hdf5-1.6.0/serial/64/include
-DEFAULT_HDF5_LIB=/usr/local/hdf5/hdf5-1.6.0/serial/64/lib
-
-##
-## Mili
-##
-MILI_DIR=/usr/gapps/visit/mili/1.06/irix64_cc_7.3.1.2_64
-
-##
-## Silo
-##
-DEFAULT_SILO_INCLUDES=/usr/gapps/silo/4.4.1/irix_6.5_64/include
-DEFAULT_SILO_LIBRARY=/usr/gapps/silo/4.4.1/irix_6.5_64/lib

configure

@@ -9592,7 +9592,7 @@ case $SHORT_UNAME in
     ;;
 
   aix)
-    if test "$CXX" = "g++"; then
+    if test "`echo $CXX | cut -c1-3`" = "g++"; then
         # AIX used to be the weird one.  It is mostly normal finally,
         # as long as you use g++.  It should be noted that for AIX to find
         # .so's as libraries, it requires "-Wl,-brtl" in the LDFLAGS.

configure.in

@@ -2589,7 +2589,7 @@ case $SHORT_UNAME in
     ;;
 
   aix)
-    if test "$CXX" = "g++"; then
+    if test "`echo $CXX | cut -c1-3`" = "g++"; then
         # AIX used to be the weird one.  It is mostly normal finally,
         # as long as you use g++.  It should be noted that for AIX to find
         # .so's as libraries, it requires "-Wl,-brtl" in the LDFLAGS.

databases/Enzo/Enzo.xml

+<?xml version="1.0"?>
+  <Plugin name="Enzo" label="Enzo" type="database" dbtype="STMD" version="1.0">
+    <Extensions> hierarchy boundary </Extensions>
+    <CXXFLAGS> $(HDF4_FLAGS) </CXXFLAGS>
+    <LIBS>     $(HDF4_LIBS)     </LIBS>
+  </Plugin>

databases/Enzo/EnzoCommonPluginInfo.C

+#include <EnzoPluginInfo.h>
+#include <avtEnzoFileFormat.h>
+#include <avtSTMDFileFormatInterface.h>
+#include <avtGenericDatabase.h>
+
+// ****************************************************************************
+//  Method:  EnzoCommonPluginInfo::GetDatabaseType
+//
+//  Purpose:
+//    Returns the type of a Enzo database.
+//
+//  Programmer:  meredith -- generated by xml2info
+//  Creation:    Tue Dec 7 14:37:43 PST 2004
+//
+// ****************************************************************************
+DatabaseType
+EnzoCommonPluginInfo::GetDatabaseType()
+{
+    return DB_TYPE_STMD;
+}
+
+// ****************************************************************************
+//  Method:  EnzoCommonPluginInfo::GetDefaultExtensions
+//
+//  Purpose:
+//    Returns the default extensions for a Enzo database.
+//
+//  Programmer:  meredith -- generated by xml2info
+//  Creation:    Tue Dec 7 14:37:43 PST 2004
+//
+// ****************************************************************************
+std::vector<std::string>
+EnzoCommonPluginInfo::GetDefaultExtensions()
+{
+    std::vector<std::string> defaultExtensions;
+    defaultExtensions.push_back("hierarchy");
+    defaultExtensions.push_back("boundary");
+
+    return defaultExtensions;
+}
+
+// ****************************************************************************
+//  Method: EnzoCommonPluginInfo::GetWriter
+//
+//  Purpose:
+//      Sets up a Enzo writer.
+//
+//  Returns:    A Enzo writer.
+//
+//  Programmer: meredith -- generated by xml2info
+//  Creation:   Tue Dec 7 14:37:43 PST 2004
+//
+// ****************************************************************************
+avtDatabaseWriter *
+EnzoCommonPluginInfo::GetWriter(void)
+{
+    return NULL;
+}
+
+// ****************************************************************************
+//  Method: EnzoCommonPluginInfo::SetUpEnzoDatabase
+//
+//  Purpose:
+//      Sets up a Enzo database.
+//
+//  Arguments:
+//      list    A list of file names.
+//      nList   The number of timesteps in list.
+//      nBlocks The number of blocks in the list.
+//
+//  Returns:    A Enzo database from list.
+//
+//  Programmer: meredith -- generated by xml2info
+//  Creation:   Tue Dec 7 14:37:43 PST 2004
+//
+// ****************************************************************************
+avtDatabase *
+EnzoCommonPluginInfo::SetupDatabase(const char *const *list,
+                                   int nList, int nBlock)
+{
+    avtSTMDFileFormat **ffl = new avtSTMDFileFormat*[nList];
+    for (int i = 0 ; i < nList ; i++)
+    {
+        ffl[i] = new avtEnzoFileFormat(list[i]);
+    }
+    avtSTMDFileFormatInterface *inter 
+           = new avtSTMDFileFormatInterface(ffl, nList);
+    return new avtGenericDatabase(inter);
+}

databases/Enzo/EnzoEnginePluginInfo.C

+#include <EnzoPluginInfo.h>
+
+#if defined(__APPLE__)
+#define GetEngineInfo Enzo_GetEngineInfo
+#endif
+
+// ****************************************************************************
+//  Function:  GetEngineInfo
+//
+//  Purpose:
+//    Return a new EnginePluginInfo for the Enzo database.
+//
+//  Programmer: meredith -- generated by xml2info
+//  Creation:   Tue Dec 7 14:37:43 PST 2004
+//
+// ****************************************************************************
+extern "C" EngineDatabasePluginInfo* GetEngineInfo()
+{