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| | DatabaseIO (Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage, MPI_Comm communicator, const Ioss::PropertyManager &props) |
| |
| | ~DatabaseIO () |
| |
| | DatabaseIO (const DatabaseIO &from)=delete |
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| DatabaseIO & | operator= (const DatabaseIO &from)=delete |
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| const std::string | get_format () const override |
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| bool | begin__ (Ioss::State state) override |
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| bool | end__ (Ioss::State state) override |
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| unsigned | entity_field_support () const override |
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| int | int_byte_size_db () const override |
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| bool | ok (bool write_message=false, std::string *error_message=nullptr, int *bad_count=nullptr) const |
| | Check to see if database state is OK. More...
|
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| bool | using_parallel_io () const |
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| int64_t | node_global_to_local (int64_t global, bool must_exist) const |
| | Get the local (process-specific) node number corresponding to a global node number. More...
|
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| int64_t | element_global_to_local (int64_t global) const |
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| virtual bool | node_major () const |
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| void | release_memory () |
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| virtual void | finalize_database () |
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| void | set_pfsname (const std::string &name) const |
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| std::string | get_pfsname () const |
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| void | set_dwname (const std::string &name) const |
| | this will be the name in BB namespace More...
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| std::string | get_dwname () const |
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| std::string | get_dwPath () const |
| | We call this ONLY after we assure that using_dw() is TRUE \ returns mount point of Datawarp namespace, e.g: /opt/cray/....<jobid> More...
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| void | check_setDW () const |
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| bool | using_dw () const |
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| std::string | get_filename () const |
| | Get the file name associated with the database. More...
|
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| virtual int | get_file_pointer () const |
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| const std::string & | decoded_filename () const |
| | Get a file-per-processor filename associated with the database. More...
|
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| bool | is_input () const |
| | Determine whether the database is an input database. More...
|
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| Ioss::DatabaseUsage | usage () const |
| | Get the Ioss::DatabaseUsage type of the database. More...
|
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| virtual bool | needs_shared_node_information () const |
| | Determine whether the database needs information about process ownership of nodes. More...
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| Ioss::IfDatabaseExistsBehavior | open_create_behavior () const |
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| void | create_path (const std::string &filename) const |
| | This function is used to create the path to an output directory (or history, restart, etc.) More...
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| void | set_region (Region *region) |
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| void | openDW (const std::string &filename) const |
| | If we are planning to use BB(aka Burst Buffer) service, we will call simple C API provided by Cray DataWarp module. More...
|
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| void | closeDW () const |
| | Function which invokes stageout from BB to Disk, prior to completion of final close. More...
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| void | openDatabase () const |
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| void | closeDatabase () const |
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| void | flush_database () const |
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| bool | open_group (const std::string &group_name) |
| | If a database type supports groups and if the database contains groups, open the specified group. More...
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| bool | create_subgroup (const std::string &group_name) |
| | If a database type supports groups, create the specified group as a child of the current group. More...
|
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| bool | begin (Ioss::State state) |
| | Set the database to the given State. More...
|
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| bool | end (Ioss::State state) |
| | Return the database to STATE_CLOSED. More...
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| bool | begin_state (int state, double time) |
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| bool | end_state (int state, double time) |
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| void | read_meta_data () |
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| void | get_step_times () |
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| virtual bool | internal_edges_available () const |
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| virtual bool | internal_faces_available () const |
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| const std::vector< std::string > & | get_information_records () const |
| | Get all information records (informative strings) for the database. More...
|
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| void | add_information_records (const std::vector< std::string > &info) |
| | Add multiple information records (informative strings) to the database. More...
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| void | add_information_record (const std::string &info) |
| | Add an information record (an informative string) to the database. More...
|
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| const std::vector< std::string > & | get_qa_records () const |
| | Get all QA records, each of which consists of 4 strings, from the database. More...
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| void | add_qa_record (const std::string &code, const std::string &code_qa, const std::string &date, const std::string &time) |
| | Add a QA record, which consists of 4 strings, to the database. More...
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| bool | get_logging () const |
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| void | set_logging (bool on_off) |
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| template<typename T > |
| int64_t | get_field (const T *reg, const Field &field, void *data, size_t data_size) const |
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| template<typename T > |
| int64_t | put_field (const T *reg, const Field &field, void *data, size_t data_size) const |
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| bool | is_parallel_consistent () const |
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| void | set_parallel_consistency (bool on_off) |
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| bool | get_use_generic_canonical_name () const |
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| void | set_use_generic_canonical_name (bool yes_no) |
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| bool | ignore_database_names () const |
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| void | ignore_database_names (bool yes_no) |
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| virtual int | maximum_symbol_length () const |
| | Get the length of the longest name in the database file. More...
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| virtual void | set_maximum_symbol_length (int) |
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| char | get_field_separator () const |
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| bool | get_field_recognition () const |
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| void | set_field_separator (char separator) |
| | Set the character used to separate a field suffix from the field basename when recognizing vector, tensor fields. More...
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| void | set_field_recognition (bool yes_no) |
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| void | set_lower_case_variable_names (bool true_false) const |
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| void | set_surface_split_type (Ioss::SurfaceSplitType split_type) |
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| Ioss::SurfaceSplitType | get_surface_split_type () const |
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| void | set_block_omissions (const std::vector< std::string > &omissions, const std::vector< std::string > &inclusions={}) |
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| void | get_block_adjacencies (const Ioss::ElementBlock *eb, std::vector< std::string > &block_adjacency) const |
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| void | compute_block_membership (Ioss::SideBlock *efblock, std::vector< std::string > &block_membership) const |
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| AxisAlignedBoundingBox | get_bounding_box (const Ioss::ElementBlock *eb) const |
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| AxisAlignedBoundingBox | get_bounding_box (const Ioss::StructuredBlock *sb) const |
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| int | int_byte_size_api () const |
| | Returns 4 or 8. More...
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| virtual void | set_int_byte_size_api (Ioss::DataSize size) const |
| | Returns 4 or 8. More...
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| Region * | get_region () const |
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| void | set_cycle_count (int count) const |
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| int | get_cycle_count () const |
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| void | set_overlay_count (int count) const |
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| int | get_overlay_count () const |
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| void | set_file_per_state (bool yes_no) const |
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| bool | get_file_per_state () const |
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| void | set_time_scale_factor (double factor) |
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| const Ioss::ParallelUtils & | util () const |
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| const Ioss::PropertyManager & | get_property_manager () const |
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| int | parallel_rank () const |
| | Get the processor that this mesh database is on. More...
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| int | parallel_size () const |
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| bool | is_parallel () const |
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| void | progress (const std::string &output) const |
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| int64_t | get_field_internal (const Ioss::Region *reg, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::EdgeBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::FaceBlock *fb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::StructuredBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::SideBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::NodeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::EdgeSet *es, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::FaceSet *fs, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::ElementSet *es, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::SideSet *ss, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal (const Ioss::CommSet *cs, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | get_field_internal_t (const Ioss::GroupingEntity *entity, const Ioss::Field &field, void *data, size_t data_size) const |
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| template<typename T > |
| void | get_data (void *data, const std::string &encoded_name, bool use_step_selection=false) const |
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| int64_t | put_field_internal (const Ioss::Region *reg, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::EdgeBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::FaceBlock *fb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::SideBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::NodeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::EdgeSet *es, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::FaceSet *fs, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::ElementSet *es, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::SideSet *ss, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::CommSet *cs, const Ioss::Field &field, void *data, size_t data_size) const override |
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| int64_t | put_field_internal (const Ioss::StructuredBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override |
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| template<typename T > |
| int64_t | put_field_internal_t (T entity, const Ioss::Field &field, void *data, size_t data_size) const |
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| void | define_model (Ioss::Field::RoleType *role=nullptr) |
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| void | define_global_variables () |
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| template<typename T > |
| T | get_attribute (const std::string &attribute_name) |
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| template<typename T > |
| void | put_data (void *data, const std::string &encoded_name) const |
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| template<typename T , typename = typename std::enable_if< !std::is_base_of<Ioss::EntitySet, T>::value, T>::type> |
| void | put_var_type (const Ioss::Field &field, const std::string &encoded_name, bool transformed_field) const |
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| template<typename T > |
| void | define_model_internal (const Ioss::Field &field, const std::string &encoded_name, const std::string &entity_type, const std::string &field_name) |
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| template<typename T > |
| void | define_entity_internal (const T &entity_blocks, Ioss::Field::RoleType *role) |
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| int | get_current_state () const |
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| template<typename T > |
| BlockInfoType | get_block_infos (const adios2::Variable< T > &var) const |
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| template<typename T > |
| FieldInfoType | get_variable_infos (const std::string &var_name) const |
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| template<typename T > |
| std::string | get_property_value (const FieldsMapType &properties_map, const std::string &entity_type, const std::string &entity_name, const std::string &property_name) const |
| |
| template<typename T > |
| FieldInfoType | get_expected_variable_infos_from_map (const EntityMapType &fields_map, const std::string &entity_type, const std::string &entity_name, const std::string &var_name) const |
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| FieldInfoType | get_variable_infos_from_map (const EntityMapType &fields_map, const std::string &entity_type, const std::string &entity_name, const std::string &var_name) const |
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| template<typename T , typename = IsIossEntityBlock<T>> |
| void | define_entity_meta_variables (const std::string &encoded_name) |
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| template<typename T , typename = IsNotIossEntityBlock<T>, typename = void> |
| void | define_entity_meta_variables (const std::string &encoded_name) |
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| void | define_field_meta_variables (const std::string &) |
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| void | define_coordinate_frames_internal (const Ioss::CoordinateFrameContainer &coordinate_frames) |
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| std::string | encoded_coordinate_frame_name (Ioss::CoordinateFrame coordinate_frame) |
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| void | put_meta_variables (const std::string &encoded_name, const Ioss::Field &field, const std::string &entity_type, const std::string &field_name) const |
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| void | write_meta_data () |
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| template<typename T > |
| void | add_entity_property (Ioss::GroupingEntity *ge, const std::string &encoded_name, const std::string &var_name) |
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| void | add_entity_properties (Ioss::GroupingEntity *ge, const FieldsMapType &properties_map, std::string name="") |
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| void | write_properties (const Ioss::GroupingEntity *const entity, const std::string &encoded_name) |
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| template<typename T > |
| int64_t | write_meta_data_container (const T &entity_blocks) |
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| std::pair< int64_t, int64_t > | write_meta_data_sideblockcontainer (const Ioss::SideBlockContainer &entity_blocks) |
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| template<typename T > |
| int64_t | get_entities (const FieldsMapType &fields_map, const FieldsMapType &properties_map) |
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| std::string | get_optional_string_variable (const std::string &field_name, const std::string &string_variable) const |
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| void | get_globals (const GlobalMapType &globals_map, const FieldsMapType &properties_map) |
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| void | compute_block_membership__ (Ioss::SideBlock *efblock, std::vector< std::string > &block_membership) const override |
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| void | define_properties (const Ioss::GroupingEntity *entity_block, const std::string &encoded_entity_name) |
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| void | read_meta_data__ () override |
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| void | read_communication_metadata () |
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| void | read_region (const FieldsMapType &fields_map) |
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| void | check_processor_info () |
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| void | check_model () |
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| int | RankInit () |
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| bool | begin_state__ (int state, double time) override |
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| bool | end_state__ (int state, double time) override |
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|
| | DatabaseIO (Region *region, std::string filename, Ioss::DatabaseUsage db_usage, MPI_Comm communicator, const Ioss::PropertyManager &props) |
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| void | set_common_side_topology () const |
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| template<typename T > |
| void | create_groups (const std::string &property_name, EntityType type, const std::string &type_name, const T *set_type) |
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| template<typename T > |
| void | create_group (EntityType type, const std::string &type_name, const std::vector< std::string > &group_spec, const T *set_type) |
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| void | handle_groups () |
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| void | check_side_topology () const |
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| virtual void | openDatabase__ () const |
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| virtual void | closeDatabase__ () const |
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| virtual void | flush_database__ () const |
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| template<> |
| void | create_group (EntityType type, const std::string &, const std::vector< std::string > &group_spec, const SideSet *) |
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| Ioss::PropertyManager | properties |
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| ElementTopology * | commonSideTopology {nullptr} |
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| std::string | originalDBFilename |
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| std::string | DBFilename |
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| std::string | decodedFilename |
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| std::string | bbName {} |
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| std::string | pfsName {} |
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| std::string | dwPath {} |
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| Ioss::State | dbState {STATE_INVALID} |
| |
| int | myProcessor {0} |
| | number of processor this database is for More...
|
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| int64_t | nodeCount {0} |
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| int64_t | elementCount {0} |
| |
| TopoContainer | sideTopology |
| | Used to speed up faceblock/edgeblock calculations. More...
|
| |
| int | cycleCount {0} |
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| int | overlayCount {0} |
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| double | timeScaleFactor {1.0} |
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| Ioss::SurfaceSplitType | splitType {SPLIT_BY_TOPOLOGIES} |
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| Ioss::DatabaseUsage | dbUsage |
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| Ioss::DataSize | dbIntSizeAPI {USE_INT32_API} |
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| bool | filePerState {false} |
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| bool | usingDataWarp {false} |
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| bool | isParallel {false} |
| | true if running in parallel More...
|
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| bool | lowerCaseVariableNames {true} |
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| bool | usingParallelIO {false} |
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| std::vector< std::string > | blockOmissions |
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| std::vector< std::string > | blockInclusions |
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| std::vector< std::string > | informationRecords |
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| std::vector< std::string > | qaRecords |
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| Ioss::Map | nodeMap {"node", DBFilename, myProcessor} |
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| Ioss::Map | edgeMap {"edge", DBFilename, myProcessor} |
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| Ioss::Map | faceMap {"face", DBFilename, myProcessor} |
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| Ioss::Map | elemMap {"element", DBFilename, myProcessor} |
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| std::vector< std::vector< bool > > | blockAdjacency |
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Public Member Functions inherited from Ioss::DatabaseIO