IOSS  2.0
Iodw_DatabaseIO.h
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32 
33 #ifndef Iodw_DatabaseIO_h
34 #define Iodw_DatabaseIO_h
35 
36 #include <Ioss_CodeTypes.h>
37 #include <Ioss_DBUsage.h> // for DatabaseUsage
38 #include <Ioss_DatabaseIO.h> // for DatabaseIO
39 #include <Ioss_IOFactory.h> // for IOFactory
40 #include <Ioss_Map.h> // for Map
41 #include <Ioss_State.h> // for State
42 #include <cstddef> // for size_t
43 #include <cstdint> // for int64_t
44 #include <string> // for string
45 #include <vector> // for vector
46 
47 namespace Ioss {
48  class CommSet;
49  class EdgeBlock;
50  class EdgeSet;
51  class ElementBlock;
52  class ElementSet;
53  class EntityBlock;
54  class FaceBlock;
55  class FaceSet;
56  class Field;
57  class GroupingEntity;
58  class NodeBlock;
59  class NodeSet;
60  class PropertyManager;
61  class Region;
62  class SideBlock;
63  class SideSet;
64  class StructuredBlock;
65 } // namespace Ioss
66 
67 /** \brief A namespace for the pamgen database format.
68  */
69 namespace Iodw {
70  class IOFactory : public Ioss::IOFactory
71  {
72  public:
73  static const IOFactory *factory();
74 
75  private:
76  IOFactory();
77  Ioss::DatabaseIO *make_IO(const std::string &filename, Ioss::DatabaseUsage db_usage,
78  MPI_Comm communicator, const Ioss::PropertyManager &properties) const;
79  };
80 
82  {
83  public:
84  DatabaseIO(Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage,
85  MPI_Comm communicator, const Ioss::PropertyManager &properties);
86  DatabaseIO(const DatabaseIO &from) = delete;
87  DatabaseIO &operator=(const DatabaseIO &from) = delete;
88  ~DatabaseIO();
89 
90  // Check capabilities of input/output database... Returns an
91  // unsigned int with the supported Ioss::EntityTypes or'ed
92  // together. If "return_value & Ioss::EntityType" is set, then the
93  // database supports that type (e.g. return_value & Ioss::FACESET)
94  unsigned entity_field_support() const override { return 0; }
95 
96  std::string title() const { return databaseTitle; }
97  int spatial_dimension() const { return spatialDimension; }
98  int node_count() const { return nodeCount; }
99  int side_count() const { return 0; }
100  int element_count() const { return elementCount; }
101  int node_block_count() const { return nodeBlockCount; }
102  int element_block_count() const { return elementBlockCount; }
103  int sideset_count() const { return sidesetCount; }
104  int nodeset_count() const { return nodesetCount; }
105  int maximum_symbol_length() const override { return 32; }
106 
108  std::vector<std::string> &block_membership) const;
109 
110  private:
111  void read_meta_data__() override;
112 
113  bool begin__(Ioss::State state) override { return false; };
114  bool end__(Ioss::State state) override { return false; };
115 
116  void read_region();
118 
119  /*
120  * TODO identify all the get_*{blocks|sets} needed here
121  */
122  void get_edgeblocks();
123  void get_elemblocks();
124  void get_faceblocks();
125  void get_nodeblocks();
126 
127  void get_edgesets();
128  void get_elemsets();
129  void get_facesets();
130  void get_nodesets();
131 
132  int get_side_connectivity(const Ioss::SideBlock *fb, int id, int side_count, int *fconnect,
133  size_t data_size) const;
134  int get_side_distributions(const Ioss::SideBlock *fb, int id, int side_count, double *dist_fact,
135  size_t data_size) const;
136 
137  const Ioss::Map &get_node_map() const;
138  const Ioss::Map &get_element_map() const;
139 
140  int64_t get_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data,
141  size_t data_size) const override;
142  int64_t get_field_internal(const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data,
143  size_t data_size) const override;
144  int64_t get_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data,
145  size_t data_size) const override;
146  int64_t get_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data,
147  size_t data_size) const override;
148  int64_t get_field_internal(const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data,
149  size_t data_size) const override;
150  int64_t get_field_internal(const Ioss::SideBlock *fb, const Ioss::Field &field, void *data,
151  size_t data_size) const override;
152  int64_t get_field_internal(const Ioss::NodeSet *ns, const Ioss::Field &field, void *data,
153  size_t data_size) const override;
154  int64_t get_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data,
155  size_t data_size) const override;
156  int64_t get_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data,
157  size_t data_size) const override;
158  int64_t get_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data,
159  size_t data_size) const override;
160  int64_t get_field_internal(const Ioss::SideSet *fs, const Ioss::Field &field, void *data,
161  size_t data_size) const override;
162  int64_t get_field_internal(const Ioss::CommSet *cs, const Ioss::Field &field, void *data,
163  size_t data_size) const override;
164  int64_t get_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field,
165  void *data, size_t data_size) const override;
166  int64_t put_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data,
167  size_t data_size) const override;
168  int64_t put_field_internal(const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data,
169  size_t data_size) const override;
170  int64_t put_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data,
171  size_t data_size) const override;
172  int64_t put_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data,
173  size_t data_size) const override;
174  int64_t put_field_internal(const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data,
175  size_t data_size) const override;
176  int64_t put_field_internal(const Ioss::SideBlock *fb, const Ioss::Field &field, void *data,
177  size_t data_size) const override;
178  int64_t put_field_internal(const Ioss::NodeSet *ns, const Ioss::Field &field, void *data,
179  size_t data_size) const override;
180  int64_t put_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data,
181  size_t data_size) const override;
182  int64_t put_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data,
183  size_t data_size) const override;
184  int64_t put_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data,
185  size_t data_size) const override;
186  int64_t put_field_internal(const Ioss::SideSet *fs, const Ioss::Field &field, void *data,
187  size_t data_size) const override;
188  int64_t put_field_internal(const Ioss::CommSet *cs, const Ioss::Field &field, void *data,
189  size_t data_size) const override;
190  int64_t put_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field,
191  void *data, size_t data_size) const override;
192 
193  std::string databaseTitle;
194 
196 
201 
202  // Communication Set Data
209  };
210 } // namespace Iodw
211 #endif // Iodw_DatabaseIO_h
Iodw::DatabaseIO::commsetNodeCount
int commsetNodeCount
Definition: Iodw_DatabaseIO.h:207
Iodw::DatabaseIO::node_block_count
int node_block_count() const
Definition: Iodw_DatabaseIO.h:101
Ioss_DBUsage.h
Iodw::DatabaseIO::end__
bool end__(Ioss::State state) override
Definition: Iodw_DatabaseIO.h:114
Iodw::DatabaseIO::~DatabaseIO
~DatabaseIO()
Definition: Iodw_DatabaseIO.C:114
Iodw::DatabaseIO
Definition: Iodw_DatabaseIO.h:81
Ioss::Field
Holds metadata for bulk data associated with a GroupingEntity.
Definition: Ioss_Field.h:47
Iodw::DatabaseIO::databaseTitle
std::string databaseTitle
Definition: Iodw_DatabaseIO.h:193
Iodw::DatabaseIO::get_faceblocks
void get_faceblocks()
Definition: Iodw_DatabaseIO.C:139
Ioss_Map.h
Iodw::DatabaseIO::get_element_map
const Ioss::Map & get_element_map() const
Ioss::IntVector
std::vector< int > IntVector
Definition: Ioss_CodeTypes.h:51
Iodw::DatabaseIO::get_elemsets
void get_elemsets()
Definition: Iodw_DatabaseIO.C:145
Iodw::DatabaseIO::side_count
int side_count() const
Definition: Iodw_DatabaseIO.h:99
Ioss::EdgeBlock
A collection of element edges with the same topology.
Definition: Ioss_EdgeBlock.h:53
Iodw::DatabaseIO::read_region
void read_region()
Definition: Iodw_DatabaseIO.C:131
Iodw::IOFactory::make_IO
Ioss::DatabaseIO * make_IO(const std::string &filename, Ioss::DatabaseUsage db_usage, MPI_Comm communicator, const Ioss::PropertyManager &properties) const
Definition: Iodw_DatabaseIO.C:89
Ioss::DatabaseUsage
DatabaseUsage
Specifies how an Ioss::DatabaseIO object will be used.
Definition: Ioss_DBUsage.h:40
Ioss
The main namespace for the Ioss library.
Definition: Ioad_DatabaseIO.C:66
Ioss::State
State
Access states for a database.
Definition: Ioss_State.h:42
Ioss::IOFactory
The main public user interface for creating Ioss::DatabaseIO objects.
Definition: Ioss_IOFactory.h:58
Ioss::Region
A grouping entity that contains other grouping entities.
Definition: Ioss_Region.h:98
Iodw::DatabaseIO::element_count
int element_count() const
Definition: Iodw_DatabaseIO.h:100
Ioss::NodeSet
A collection of nodes.
Definition: Ioss_NodeSet.h:53
Ioss::FaceSet
A collection of element faces.
Definition: Ioss_FaceSet.h:54
Ioss::StructuredBlock
A structured zone – i,j,k.
Definition: Ioss_StructuredBlock.h:103
Iodw::DatabaseIO::get_field_internal
int64_t get_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iodw_DatabaseIO.C:151
Iodw::DatabaseIO::title
std::string title() const
Definition: Iodw_DatabaseIO.h:96
Ioss::PropertyManager
A collection of Ioss::Property objects.
Definition: Ioss_PropertyManager.h:49
Iodw::IOFactory
Definition: Iodw_DatabaseIO.h:70
Ioss::DatabaseIO::elementCount
int64_t elementCount
Definition: Ioss_DatabaseIO.h:629
Ioss::EdgeSet
A collection of element edges.
Definition: Ioss_EdgeSet.h:54
Ioss::ElementSet
A collection of elements.
Definition: Ioss_ElementSet.h:54
Ioss::CommSet
Definition: Ioss_CommSet.h:51
Iodw::IOFactory::IOFactory
IOFactory()
Definition: Iodw_DatabaseIO.C:87
Iodw::DatabaseIO::maximum_symbol_length
int maximum_symbol_length() const override
Get the length of the longest name in the database file.
Definition: Iodw_DatabaseIO.h:105
Ioss::DatabaseIO::nodeCount
int64_t nodeCount
Definition: Ioss_DatabaseIO.h:628
Iodw::DatabaseIO::elemCmapIds
Ioss::IntVector elemCmapIds
Definition: Iodw_DatabaseIO.h:205
Ioss::FaceBlock
A collection of element faces with the same topology.
Definition: Ioss_FaceBlock.h:53
Ioss::DatabaseIO::properties
Ioss::PropertyManager properties
Definition: Ioss_DatabaseIO.h:578
Iodw::DatabaseIO::get_nodesets
void get_nodesets()
Definition: Iodw_DatabaseIO.C:149
Iodw::DatabaseIO::get_side_connectivity
int get_side_connectivity(const Ioss::SideBlock *fb, int id, int side_count, int *fconnect, size_t data_size) const
Ioss::DatabaseIO
An input or output Database.
Definition: Ioss_DatabaseIO.h:82
Ioss::DatabaseIO::DatabaseIO
DatabaseIO()=delete
Iodw::DatabaseIO::read_communication_metadata
void read_communication_metadata()
Definition: Iodw_DatabaseIO.C:133
Iodw::DatabaseIO::elemCmapElemCnts
Ioss::IntVector elemCmapElemCnts
Definition: Iodw_DatabaseIO.h:206
Ioss_State.h
Ioss::SideBlock
A collection of element sides having the same topology.
Definition: Ioss_SideBlock.h:59
Iodw::DatabaseIO::begin__
bool begin__(Ioss::State state) override
Definition: Iodw_DatabaseIO.h:113
Iodw::DatabaseIO::put_field_internal
int64_t put_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iodw_DatabaseIO.C:216
Iodw::DatabaseIO::get_node_map
const Ioss::Map & get_node_map() const
Iodw::DatabaseIO::get_edgesets
void get_edgesets()
Definition: Iodw_DatabaseIO.C:143
Iodw::DatabaseIO::nodesetCount
int nodesetCount
Definition: Iodw_DatabaseIO.h:199
Iodw::DatabaseIO::get_side_distributions
int get_side_distributions(const Ioss::SideBlock *fb, int id, int side_count, double *dist_fact, size_t data_size) const
Iodw::DatabaseIO::compute_block_membership
void compute_block_membership(Ioss::SideBlock *efblock, std::vector< std::string > &block_membership) const
Ioss_IOFactory.h
Ioss::ElementBlock
A collection of elements having the same topology.
Definition: Ioss_ElementBlock.h:48
Iodw::DatabaseIO::nodeCmapNodeCnts
Ioss::IntVector nodeCmapNodeCnts
Definition: Iodw_DatabaseIO.h:204
Ioss::Map
Definition: Ioss_Map.h:52
Iodw::DatabaseIO::get_facesets
void get_facesets()
Definition: Iodw_DatabaseIO.C:147
Iodw::DatabaseIO::operator=
DatabaseIO & operator=(const DatabaseIO &from)=delete
anonymous_namespace{cth_pressure_map.C}::data
std::vector< char > data
Definition: cth_pressure_map.C:74
Iodw::DatabaseIO::nodeBlockCount
int nodeBlockCount
Definition: Iodw_DatabaseIO.h:197
Iodw::DatabaseIO::sidesetCount
int sidesetCount
Definition: Iodw_DatabaseIO.h:200
Iodw::DatabaseIO::spatial_dimension
int spatial_dimension() const
Definition: Iodw_DatabaseIO.h:97
Iodw::DatabaseIO::get_elemblocks
void get_elemblocks()
Definition: Iodw_DatabaseIO.C:137
Ioss::NodeBlock
A collection of all nodes in the region.
Definition: Ioss_NodeBlock.h:53
Iodw::IOFactory::factory
static const IOFactory * factory()
Definition: Iodw_DatabaseIO.C:81
Iodw::DatabaseIO::read_meta_data__
void read_meta_data__() override
Definition: Iodw_DatabaseIO.C:116
MPI_Comm
int MPI_Comm
Definition: Ioss_CodeTypes.h:96
Iodw::DatabaseIO::spatialDimension
int spatialDimension
Definition: Iodw_DatabaseIO.h:195
Iodw::DatabaseIO::node_count
int node_count() const
Definition: Iodw_DatabaseIO.h:98
Iodw::DatabaseIO::commsetElemCount
int commsetElemCount
Definition: Iodw_DatabaseIO.h:208
Iodw
A namespace for the pamgen database format.
Definition: Iodw_DatabaseIO.C:79
Ioss::SideSet
A collection of element sides.
Definition: Ioss_SideSet.h:53
Ioss_CodeTypes.h
Iodw::DatabaseIO::nodeCmapIds
Ioss::IntVector nodeCmapIds
Definition: Iodw_DatabaseIO.h:203
Iodw::DatabaseIO::nodeset_count
int nodeset_count() const
Definition: Iodw_DatabaseIO.h:104
Iodw::DatabaseIO::get_edgeblocks
void get_edgeblocks()
Definition: Iodw_DatabaseIO.C:135
Iodw::DatabaseIO::entity_field_support
unsigned entity_field_support() const override
Definition: Iodw_DatabaseIO.h:94
Iodw::DatabaseIO::element_block_count
int element_block_count() const
Definition: Iodw_DatabaseIO.h:102
Iodw::DatabaseIO::elementBlockCount
int elementBlockCount
Definition: Iodw_DatabaseIO.h:198
Ioss_DatabaseIO.h
Iodw::DatabaseIO::get_nodeblocks
void get_nodeblocks()
Definition: Iodw_DatabaseIO.C:141
Iodw::DatabaseIO::sideset_count
int sideset_count() const
Definition: Iodw_DatabaseIO.h:103