|
| | DatabaseIO (Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage, MPI_Comm communicator, const Ioss::PropertyManager &properties) |
| |
| | DatabaseIO (const DatabaseIO &from)=delete |
| |
| DatabaseIO & | operator= (const DatabaseIO &from)=delete |
| |
| | ~DatabaseIO () |
| |
| bool | needs_shared_node_information () const override |
| | Determine whether the database needs information about process ownership of nodes. More...
|
| |
| | DatabaseIO (Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage, MPI_Comm communicator, const Ioss::PropertyManager &props) |
| |
| | DatabaseIO (const DatabaseIO &from)=delete |
| |
| DatabaseIO & | operator= (const DatabaseIO &from)=delete |
| |
| | ~DatabaseIO () override |
| |
| unsigned | entity_field_support () const override |
| |
| bool | ok (bool write_message=false, std::string *error_message=nullptr, int *bad_count=nullptr) const |
| | Check to see if database state is OK. More...
|
| |
| bool | using_parallel_io () const |
| |
| int64_t | node_global_to_local (int64_t global, bool must_exist) const |
| | Get the local (process-specific) node number corresponding to a global node number. More...
|
| |
| int64_t | element_global_to_local (int64_t global) const |
| |
| virtual bool | node_major () const |
| |
| void | release_memory () |
| |
| virtual void | finalize_database () |
| |
| std::string | get_filename () const |
| | Get the file name associated with the database. More...
|
| |
| const std::string & | decoded_filename () const |
| | Get a file-per-processor filename associated with the database. More...
|
| |
| bool | is_input () const |
| | Determine whether the database is an input database. More...
|
| |
| Ioss::DatabaseUsage | usage () const |
| | Get the Ioss::DatabaseUsage type of the database. More...
|
| |
| Ioss::IfDatabaseExistsBehavior | open_create_behavior () const |
| |
| void | create_path (const std::string &filename) const |
| | This function is used to create the path to an output directory (or history, restart, etc.) More...
|
| |
| void | set_region (Region *region) |
| |
| void | openDatabase () const |
| |
| void | closeDatabase () const |
| |
| void | flush_database () const |
| |
| bool | open_group (const std::string &group_name) |
| | If a database type supports groups and if the database contains groups, open the specified group. More...
|
| |
| bool | create_subgroup (const std::string &group_name) |
| | If a database type supports groups, create the specified group as a child of the current group. More...
|
| |
| bool | begin (Ioss::State state) |
| | Set the database to the given State. More...
|
| |
| bool | end (Ioss::State state) |
| | Return the database to STATE_CLOSED. More...
|
| |
| bool | begin_state (Region *region, int state, double time) |
| |
| bool | end_state (Region *region, int state, double time) |
| |
| void | read_meta_data () |
| |
| void | get_step_times () |
| |
| virtual bool | internal_edges_available () const |
| |
| virtual bool | internal_faces_available () const |
| |
| const std::vector< std::string > & | get_information_records () const |
| | Get all information records (informative strings) for the database. More...
|
| |
| void | add_information_records (const std::vector< std::string > &info) |
| | Add multiple information records (informative strings) to the database. More...
|
| |
| void | add_information_record (const std::string &info) |
| | Add an information record (an informative string) to the database. More...
|
| |
| const std::vector< std::string > & | get_qa_records () const |
| | Get all QA records, each of which consists of 4 strings, from the database. More...
|
| |
| void | add_qa_record (const std::string &code, const std::string &code_qa, const std::string &date, const std::string &time) |
| | Add a QA record, which consists of 4 strings, to the database. More...
|
| |
| bool | get_logging () const |
| |
| void | set_logging (bool on_off) |
| |
| template<typename T > |
| int64_t | get_field (const T *reg, const Field &field, void *data, size_t data_size) const |
| |
| template<typename T > |
| int64_t | put_field (const T *reg, const Field &field, void *data, size_t data_size) const |
| |
| bool | is_parallel_consistent () const |
| |
| void | set_parallel_consistency (bool on_off) |
| |
| bool | get_use_generic_canonical_name () const |
| |
| void | set_use_generic_canonical_name (bool yes_no) |
| |
| bool | ignore_database_names () const |
| |
| void | ignore_database_names (bool yes_no) |
| |
| char | get_field_separator () const |
| |
| bool | get_field_recognition () const |
| |
| void | set_field_separator (char separator) |
| | Set the character used to separate a field suffix from the field basename when recognizing vector, tensor fields. More...
|
| |
| void | set_field_recognition (bool yes_no) |
| |
| void | set_lower_case_variable_names (bool true_false) const |
| |
| void | set_surface_split_type (Ioss::SurfaceSplitType split_type) |
| |
| Ioss::SurfaceSplitType | get_surface_split_type () const |
| |
| void | set_block_omissions (const std::vector< std::string > &omissions, const std::vector< std::string > &inclusions={}) |
| |
| void | get_block_adjacencies (const Ioss::ElementBlock *eb, std::vector< std::string > &block_adjacency) const |
| |
| void | compute_block_membership (Ioss::SideBlock *efblock, std::vector< std::string > &block_membership) const |
| |
| AxisAlignedBoundingBox | get_bounding_box (const Ioss::ElementBlock *eb) const |
| |
| AxisAlignedBoundingBox | get_bounding_box (const Ioss::StructuredBlock *sb) const |
| |
| int | int_byte_size_api () const |
| | Returns 4 or 8. More...
|
| |
| Region * | get_region () const |
| |
| void | set_cycle_count (int count) const |
| |
| void | set_overlay_count (int count) const |
| |
| void | set_time_scale_factor (double factor) |
| |
| const Ioss::ParallelUtils & | util () const |
| |
| const Ioss::PropertyManager & | get_property_manager () const |
| |
| int | parallel_rank () const |
| | Get the processor that this mesh database is on. More...
|
| |
| int | parallel_size () const |
| |
| bool | is_parallel () const |
| |
| template<> |
| void | create_group (EntityType type, const std::string &, const std::vector< std::string > &group_spec, const SideSet *) |
| |
|
| void | compute_node_status () const |
| |
| void | release_memory__ () override |
| |
| bool | ok__ (bool write_message=false, std::string *error_message=nullptr, int *bad_count=nullptr) const override |
| |
| void | get_step_times__ () override |
| |
| bool | open_input_file (bool write_message, std::string *error_msg, int *bad_count, bool abort_if_error) const |
| |
| bool | handle_output_file (bool write_message, std::string *error_msg, int *bad_count, bool overwrite, bool abort_if_error) const |
| |
| bool | check_valid_file_ptr (bool write_message, std::string *error_msg, int *bad_count, bool abort_if_error) const |
| |
| int64_t | get_field_internal (const Ioss::Region *reg, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::EdgeBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::FaceBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::StructuredBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::SideBlock *fb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::NodeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::FaceSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::ElementSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::SideSet *fs, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | get_field_internal (const Ioss::CommSet *cs, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::Region *reg, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::EdgeBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::FaceBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::SideBlock *fb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::NodeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::FaceSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::ElementSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::SideSet *fs, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::CommSet *cs, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_field_internal (const Ioss::StructuredBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override |
| |
| int64_t | put_Xset_field_internal (ex_entity_type type, const Ioss::EntitySet *ns, const Ioss::Field &field, void *data, size_t data_size) const |
| |
| int64_t | get_Xset_field_internal (ex_entity_type type, const Ioss::EntitySet *ns, const Ioss::Field &field, void *data, size_t data_size) const |
| |
| int | get_file_pointer () const override |
| |
| int | free_file_pointer () const override |
| |
| int64_t | read_nodal_coordinates () |
| |
| void | read_elements (const Ioss::ElementBlock &block) |
| |
| void | create_implicit_global_map () const |
| |
| void | output_node_map () const |
| |
| void | read_meta_data__ () override |
| |
| int64_t | read_transient_field (ex_entity_type type, const Ioex::VariableNameMap &variables, const Ioss::Field &field, const Ioss::GroupingEntity *ge, void *data) const |
| |
| int64_t | read_attribute_field (ex_entity_type type, const Ioss::Field &field, const Ioss::GroupingEntity *ge, void *data) const |
| |
| int64_t | write_attribute_field (ex_entity_type type, const Ioss::Field &field, const Ioss::GroupingEntity *ge, void *data) const |
| |
| int64_t | read_ss_transient_field (const Ioss::Field &field, int64_t id, void *variables, std::vector< int > &is_valid_side) const |
| |
| void | write_nodal_transient_field (ex_entity_type type, const Ioss::Field &field, const Ioss::NodeBlock *nb, int64_t count, void *variables) const |
| |
| void | write_entity_transient_field (ex_entity_type type, const Ioss::Field &field, const Ioss::GroupingEntity *ge, int64_t count, void *variables) const |
| |
| void | write_meta_data () override |
| |
| void | read_region () |
| |
| void | get_edgeblocks () |
| |
| void | get_faceblocks () |
| |
| void | get_elemblocks () |
| |
| void | get_blocks (ex_entity_type entity_type, int rank_offset, const std::string &basename) |
| |
| void | get_sidesets () |
| |
| template<typename T > |
| void | get_sets (ex_entity_type type, int64_t count, const std::string &base, const T *) |
| |
| void | get_nodesets () |
| |
| void | get_edgesets () |
| |
| void | get_facesets () |
| |
| void | get_elemsets () |
| |
| void | get_commsets () |
| |
| const Ioss::Map & | get_map (ex_entity_type type) const |
| |
| const Ioss::Map & | get_map (Ioss::Map &entity_map, int64_t entityCount, int64_t file_offset, int64_t file_count, ex_entity_type entity_type, ex_inquiry inquiry_type) const |
| |
| int64_t | handle_node_ids (void *ids, int64_t num_to_get, size_t offset, size_t count) const |
| |
| int64_t | handle_element_ids (const Ioss::ElementBlock *eb, void *ids, size_t num_to_get, size_t offset, size_t count) const |
| |
| int64_t | handle_face_ids (const Ioss::FaceBlock *eb, void *ids, size_t num_to_get) const |
| |
| int64_t | handle_edge_ids (const Ioss::EdgeBlock *eb, void *ids, size_t num_to_get) const |
| |
| int64_t | get_side_connectivity (const Ioss::SideBlock *fb, int64_t id, int64_t side_count, void *fconnect, bool map_ids) const |
| |
| int64_t | get_side_distributions (const Ioss::SideBlock *fb, int64_t id, int64_t my_side_count, double *dist_fact, size_t data_size) const |
| |
| int64_t | get_side_field (const Ioss::SideBlock *ef_blk, const Ioss::Field &field, void *data, size_t data_size) const |
| |
| int64_t | put_side_field (const Ioss::SideBlock *fb, const Ioss::Field &field, void *data, size_t data_size) const |
| |
|
| bool | open_group__ (const std::string &group_name) override |
| |
| bool | create_subgroup__ (const std::string &group_name) override |
| |
| bool | begin__ (Ioss::State state) override |
| |
| bool | end__ (Ioss::State state) override |
| |
| bool | begin_state__ (Ioss::Region *region, int state, double time) override |
| |
| bool | end_state__ (Ioss::Region *region, int state, double time) override |
| |
| int | maximum_symbol_length () const override |
| | Get the length of the longest name in the database file. More...
|
| |
| void | set_maximum_symbol_length (int requested_symbol_size) override |
| |
| size_t | handle_block_ids (const Ioss::EntityBlock *eb, ex_entity_type map_type, Ioss::Map &entity_map, void *ids, size_t num_to_get, size_t offset, size_t count) const |
| |
| void | compute_block_membership__ (Ioss::SideBlock *efblock, std::vector< std::string > &block_membership) const override |
| |
| int | int_byte_size_db () const override |
| |
| void | set_int_byte_size_api (Ioss::DataSize size) const override |
| | Returns 4 or 8. More...
|
| |
| void | write_results_metadata () |
| |
| void | openDatabase__ () const override |
| |
| void | closeDatabase__ () const override |
| |
| int | get_current_state () const |
| |
| void | put_qa () |
| |
| void | put_info () |
| |
| template<typename T > |
| void | internal_write_results_metadata (ex_entity_type type, std::vector< T *> entities, int &glob_index) |
| |
| void | generate_sideset_truth_table () |
| |
| void | output_results_names (ex_entity_type type, VariableNameMap &variables) const |
| |
| int | gather_names (ex_entity_type type, VariableNameMap &variables, const Ioss::GroupingEntity *ge, int index, bool reduction) |
| |
| void | get_nodeblocks () |
| |
| void | add_attribute_fields (ex_entity_type entity_type, Ioss::GroupingEntity *block, int attribute_count, const std::string &type) |
| |
| void | output_other_meta_data () |
| |
| int64_t | internal_add_results_fields (ex_entity_type type, Ioss::GroupingEntity *entity, int64_t position, int64_t block_count, Ioss::IntVector &truth_table, Ioex::VariableNameMap &variables) |
| |
| int64_t | add_results_fields (ex_entity_type type, Ioss::GroupingEntity *entity, int64_t position=0) |
| |
| void | add_region_fields () |
| |
| void | store_reduction_field (ex_entity_type type, const Ioss::Field &field, const Ioss::GroupingEntity *ge, void *variables) const |
| |
| void | get_reduction_field (ex_entity_type type, const Ioss::Field &field, const Ioss::GroupingEntity *ge, void *variables) const |
| |
| void | write_reduction_fields () const |
| |
| void | read_reduction_fields () const |
| |
| int | get_database_step (int global_step) const |
| |
| void | flush_database__ () const override |
| |
| void | finalize_write (double sim_time) |
| |
| | DatabaseIO (Region *region, std::string filename, Ioss::DatabaseUsage db_usage, MPI_Comm communicator, const Ioss::PropertyManager &props) |
| |
| void | set_common_side_topology () const |
| |
| template<typename T > |
| void | create_groups (const std::string &property_name, EntityType type, const std::string &type_name, const T *set_type) |
| |
| template<typename T > |
| void | create_group (EntityType type, const std::string &type_name, const std::vector< std::string > &group_spec, const T *set_type) |
| |
| void | handle_groups () |
| |
| void | check_side_topology () const |
| |
| int | exodusFilePtr {-1} |
| |
| std::string | m_groupName |
| |
| EntityIdSet | ids_ |
| |
| int | exodusMode {EX_CLOBBER} |
| |
| int | dbRealWordSize {8} |
| |
| int | maximumNameLength {32} |
| |
| int | spatialDimension {0} |
| |
| int64_t | edgeCount {0} |
| |
| int64_t | faceCount {0} |
| |
| std::map< ex_entity_type, int > | m_groupCount |
| |
| Ioss::Int64Vector | nodeCmapIds |
| |
| Ioss::Int64Vector | nodeCmapNodeCnts |
| |
| Ioss::Int64Vector | elemCmapIds |
| |
| Ioss::Int64Vector | elemCmapElemCnts |
| |
| int64_t | commsetNodeCount {0} |
| |
| int64_t | commsetElemCount {0} |
| |
| std::map< ex_entity_type, Ioss::IntVector > | m_truthTable |
| |
| std::map< ex_entity_type, VariableNameMap > | m_variables |
| |
| ValueContainer | globalValues |
| |
| std::vector< unsigned char > | nodeConnectivityStatus |
| |
| std::map< std::string, Ioss::Int64Vector > | activeNodesetNodesIndex |
| |
| time_t | timeLastFlush {0} |
| |
| bool | fileExists {false} |
| |
| bool | minimizeOpenFiles {false} |
| |
| bool | blockAdjacenciesCalculated {false} |
| |
| bool | nodeConnectivityStatusCalculated |
| |
| Ioss::PropertyManager | properties |
| |
| ElementTopology * | commonSideTopology {nullptr} |
| |
| std::string | DBFilename |
| |
| std::string | decodedFilename |
| |
| Ioss::State | dbState {STATE_INVALID} |
| |
| bool | isParallel {false} |
| | true if running in parallel More...
|
| |
| int | myProcessor {0} |
| | number of processor this database is for More...
|
| |
| int64_t | nodeCount {0} |
| |
| int64_t | elementCount {0} |
| |
| TopoContainer | sideTopology |
| | Used to speed up faceblock/edgeblock calculations. More...
|
| |
| int | cycleCount {0} |
| |
| int | overlayCount {0} |
| |
| double | timeScaleFactor {1.0} |
| |
| Ioss::SurfaceSplitType | splitType {SPLIT_BY_TOPOLOGIES} |
| |
| Ioss::DatabaseUsage | dbUsage |
| |
| Ioss::DataSize | dbIntSizeAPI {USE_INT32_API} |
| |
| bool | lowerCaseVariableNames {true} |
| |
| bool | usingParallelIO {false} |
| |
| std::vector< std::string > | blockOmissions |
| |
| std::vector< std::string > | blockInclusions |
| |
| std::vector< std::string > | informationRecords |
| |
| std::vector< std::string > | qaRecords |
| |
| Ioss::Map | nodeMap {"node", DBFilename, myProcessor} |
| |
| Ioss::Map | edgeMap {"edge", DBFilename, myProcessor} |
| |
| Ioss::Map | faceMap {"face", DBFilename, myProcessor} |
| |
| Ioss::Map | elemMap {"element", DBFilename, myProcessor} |
| |
| std::vector< std::vector< bool > > | blockAdjacency |
| |
Public Member Functions inherited from Ioex::DatabaseIO