IOSS  2.0
Iohb_DatabaseIO.h
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32 
33 #ifndef IOSS_Iohb_DatabaseIO_h
34 #define IOSS_Iohb_DatabaseIO_h
35 
36 #include "Ioss_State.h" // for State
37 #include <Ioss_CodeTypes.h>
38 #include <Ioss_DBUsage.h> // for DatabaseUsage
39 #include <Ioss_DatabaseIO.h> // for DatabaseIO
40 #include <Ioss_IOFactory.h> // for IOFactory
41 #include <cstddef> // for size_t
42 #include <cstdint> // for int64_t
43 #include <iostream> // for ostream
44 #include <string> // for string
45 namespace Iohb {
46  class Layout;
47  class CommSet;
48  class EdgeBlock;
49  class EdgeSet;
50  class ElementBlock;
51  class ElementSet;
52  class FaceBlock;
53  class FaceSet;
54  class Field;
55  class NodeBlock;
56  class NodeSet;
57  class PropertyManager;
58  class Region;
59  class SideBlock;
60  class SideSet;
61  class StructuredBlock;
62 } // namespace Iohb
63 
64 namespace Ioss {
65  class GroupingEntity;
66  class EntityBlock;
67 } // namespace Ioss
68 
69 /** \brief A namespace for the heartbeat database format.
70  */
71 namespace Iohb {
72  class Layout;
73 
74  enum Format { DEFAULT = 0, SPYHIS = 1 };
75 
76  class IOFactory : public Ioss::IOFactory
77  {
78  public:
79  static const IOFactory *factory();
80 
81  private:
82  IOFactory();
83  Ioss::DatabaseIO *make_IO(const std::string &filename, Ioss::DatabaseUsage db_usage,
84  MPI_Comm communicator,
85  const Ioss::PropertyManager &props) const override;
86  };
87 
89  {
90  public:
91  DatabaseIO(Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage,
92  MPI_Comm communicator, const Ioss::PropertyManager &props);
93  DatabaseIO(const DatabaseIO &from) = delete;
94  DatabaseIO &operator=(const DatabaseIO &from) = delete;
95 
96  ~DatabaseIO() override;
97 
98  // Check capabilities of input/output database... Returns an
99  // unsigned int with the supported Ioss::EntityTypes or'ed
100  // together. If "return_value & Ioss::EntityType" is set, then the
101  // database supports that type (e.g. return_value & Ioss::FACESET)
102  unsigned entity_field_support() const override;
103 
104  int int_byte_size_db() const override { return int_byte_size_api(); }
105 
106  private:
107  int64_t node_global_to_local__(int64_t /* global */, bool /* must_exist */) const override
108  {
109  return 0;
110  }
111  int64_t element_global_to_local__(int64_t /* global */) const override { return 0; }
112 
113  void read_meta_data__() override {}
114 
115  void flush_database__() const override;
116 
117  bool begin__(Ioss::State state) override;
118  bool end__(Ioss::State state) override;
119 
120  bool begin_state__(Ioss::Region *region, int state, double time) override;
121  bool end_state__(Ioss::Region *region, int state, double time) override;
122 
123  void initialize(const Ioss::Region *region) const;
124 
125  int64_t get_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data,
126  size_t data_size) const override;
127  int64_t get_field_internal(const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data,
128  size_t data_size) const override;
129  int64_t get_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data,
130  size_t data_size) const override;
131  int64_t get_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data,
132  size_t data_size) const override;
133  int64_t get_field_internal(const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data,
134  size_t data_size) const override;
135  int64_t get_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field,
136  void *data, size_t data_size) const override
137  {
138  return -1;
139  }
140  int64_t get_field_internal(const Ioss::SideBlock *fb, const Ioss::Field &field, void *data,
141  size_t data_size) const override;
142  int64_t get_field_internal(const Ioss::NodeSet *ns, const Ioss::Field &field, void *data,
143  size_t data_size) const override;
144  int64_t get_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data,
145  size_t data_size) const override;
146  int64_t get_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data,
147  size_t data_size) const override;
148  int64_t get_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data,
149  size_t data_size) const override;
150  int64_t get_field_internal(const Ioss::SideSet *fs, const Ioss::Field &field, void *data,
151  size_t data_size) const override;
152  int64_t get_field_internal(const Ioss::CommSet *cs, const Ioss::Field &field, void *data,
153  size_t data_size) const override;
154 
155  int64_t put_field_internal(const Ioss::Region *region, const Ioss::Field &field, void *data,
156  size_t data_size) const override;
157  int64_t put_field_internal(const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data,
158  size_t data_size) const override;
159  int64_t put_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data,
160  size_t data_size) const override;
161  int64_t put_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data,
162  size_t data_size) const override;
163  int64_t put_field_internal(const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data,
164  size_t data_size) const override;
165  int64_t put_field_internal(const Ioss::SideBlock *fb, const Ioss::Field &field, void *data,
166  size_t data_size) const override;
167  int64_t put_field_internal(const Ioss::NodeSet *ns, const Ioss::Field &field, void *data,
168  size_t data_size) const override;
169  int64_t put_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data,
170  size_t data_size) const override;
171  int64_t put_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data,
172  size_t data_size) const override;
173  int64_t put_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data,
174  size_t data_size) const override;
175  int64_t put_field_internal(const Ioss::SideSet *fs, const Ioss::Field &field, void *data,
176  size_t data_size) const override;
177  int64_t put_field_internal(const Ioss::CommSet *cs, const Ioss::Field &field, void *data,
178  size_t data_size) const override;
179  int64_t put_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field,
180  void *data, size_t data_size) const override
181  {
182  return -1;
183  }
184 
187 
188  std::ostream *logStream;
191 
192  std::string tsFormat;
193  std::string separator_;
200 
203  enum Format fileFormat;
204  };
205 } // namespace Iohb
206 #endif // IOSS_Iohb_DatabaseIO_h
The main namespace for the Ioss library.
Definition: Iocgns_DatabaseIO.h:50
An input or output Database.
Definition: Ioss_DatabaseIO.h:80
A collection of nodes.
Definition: Ioss_NodeSet.h:53
A collection of element faces with the same topology.
Definition: Ioss_FaceBlock.h:53
int64_t get_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iohb_DatabaseIO.h:135
int64_t element_global_to_local__(int64_t) const override
Definition: Iohb_DatabaseIO.h:111
A collection of element faces.
Definition: Ioss_FaceSet.h:54
Definition: Iohb_DatabaseIO.h:74
std::string separator_
Definition: Iohb_DatabaseIO.h:193
std::string tsFormat
Definition: Iohb_DatabaseIO.h:192
bool showLabels
Definition: Iohb_DatabaseIO.h:196
A collection of element edges.
Definition: Ioss_EdgeSet.h:54
bool appendOutput
Definition: Iohb_DatabaseIO.h:198
A collection of element sides having the same topology.
Definition: Ioss_SideBlock.h:61
State
Access states for a database.
Definition: Ioss_State.h:42
The main public user interface for creating Ioss::DatabaseIO objects.
Definition: Ioss_IOFactory.h:58
int64_t node_global_to_local__(int64_t, bool) const override
Definition: Iohb_DatabaseIO.h:107
time_t timeLastFlush_
Definition: Iohb_DatabaseIO.h:185
A collection of elements having the same topology.
Definition: Ioss_ElementBlock.h:48
A structured zone – i,j,k.
Definition: Ioss_StructuredBlock.h:98
A collection of elements.
Definition: Ioss_ElementSet.h:54
DatabaseUsage
Specifies how an Ioss::DatabaseIO object will be used.
Definition: Ioss_DBUsage.h:40
int fieldWidth_
Definition: Iohb_DatabaseIO.h:195
std::ostream * logStream
Definition: Iohb_DatabaseIO.h:188
bool showLegend
Definition: Iohb_DatabaseIO.h:197
A collection of all nodes in the region.
Definition: Ioss_NodeBlock.h:53
Layout * layout_
Definition: Iohb_DatabaseIO.h:189
bool initialized_
Definition: Iohb_DatabaseIO.h:201
int int_byte_size_db() const override
Definition: Iohb_DatabaseIO.h:104
bool addTimeField
Definition: Iohb_DatabaseIO.h:199
Definition: Ioss_CommSet.h:51
time_t flushInterval_
Definition: Iohb_DatabaseIO.h:186
Definition: Iohb_DatabaseIO.h:74
A grouping entity that contains other grouping entities.
Definition: Ioss_Region.h:98
Definition: Iohb_DatabaseIO.h:76
Definition: Iohb_DatabaseIO.h:88
A collection of element sides.
Definition: Ioss_SideSet.h:59
A namespace for the heartbeat database format.
Definition: Iohb_DatabaseIO.C:146
Holds metadata for bulk data associated with a GroupingEntity.
Definition: Ioss_Field.h:47
int precision_
Definition: Iohb_DatabaseIO.h:194
int MPI_Comm
Definition: Ioss_CodeTypes.h:79
void read_meta_data__() override
Definition: Iohb_DatabaseIO.h:113
bool streamNeedsDelete
Definition: Iohb_DatabaseIO.h:202
int64_t put_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iohb_DatabaseIO.h:179
A collection of Ioss::Property objects.
Definition: Ioss_PropertyManager.h:49
std::vector< char > data
Definition: Ioss_Utils.C:78
Format
Definition: Iohb_DatabaseIO.h:74
Layout * legend_
Definition: Iohb_DatabaseIO.h:190
A collection of element edges with the same topology.
Definition: Ioss_EdgeBlock.h:53
Definition: Iohb_Layout.h:42