- 19 Dec, 2017 40 commits
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26813 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
The following warning was reported when directly invoking the module from the command line. For example: $ cmake \ -DCMAKE_INSTALL_PREFIX:PATH=/path/to/SlicerVMTK-build/inner-build/_CPack_Packages/Darwin/TGZ/26720-macosx-amd64-SlicerVMTK-git0efbf09-2017-12-18 \ -P SlicerExtensionBundle/SlicerExtensionCPackBundleFixup.cmake CMake Warning (dev) in /path/to/Slicer/CMake/BundleUtilitiesWithRPath.cmake: Policy CMP0011 is not set: Included scripts do automatic cmake_policy PUSH and POP. Run "cmake --help-policy CMP0011" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The included script /path/to/Slicer/CMake/BundleUtilitiesWithRPath.cmake affects policy settings. CMake is implying the NO_POLICY_SCOPE option for compatibility, so the effects are applied to the including context. Call Stack (most recent call first): SlicerExtensionBundle/SlicerExtensionCPackBundleFixup.cmake:2 (include) This warning is for project developers. Use -Wno-dev to suppress it. git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26812 3bd1e089-480b-0410-8dfb-8563597acbee -
jcfr authored
Added options to application settings: - Acquisition geometry regularization: enable/disable adding regularization transform. A default option is added for those who don't know/don't care. For now, it is disabled by default. When an issue is found then Slicer displays a warning and the user may enable regularization. In the future we may add a "resample" option as well, to not just apply a transform but also use it to resample the volume. - Allow loading subseries by time: if disabled (default) then loadables are not offered by content or trigger time. This reduces clutter and increases chance that users try alternative loadables, grouped for example by image orientation. Minor improvements: - Simpler node names are generated for subseries. Instead of including actual image orientation and timestamps (which are long, cryptic strings), we use just indexes (imageOrientationPatient 1, imageOrientationPatient 2, ...). - Acquisition transform is added under the same subject hierarchy folder as the volume. git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26811 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
This commit updates the build system to ensure vtk can be imported from a build or an install tree. It fixes a regression introduced in r26697 where a newer version VTK9 is used. The Slicer build system is updated to adapt to changes introduced the commit kitware/VTK@867d93c (Cleanup VTK's Python package.). It also updates VTK9 to include the following patch: $ git shortlog Slicer/VTK@27c57a1..Slicer/VTK@887c506 --no-merges Jean-Christophe Fillion-Robin (1): cmake: re-associate RuntimeLibraries component with python install rules also contributed upstream as vtk/vtk!3708 git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26810 3bd1e089-480b-0410-8dfb-8563597acbee -
jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26809 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
Reported-by:
Dzenan Zukic <dzenan.zukic@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26808 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26807 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26806 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26805 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
List of changes: $ git shortlog 4292fe0..1e13d98 --no-merges Jean-Christophe Fillion-Robin (1): COMP: Fix unused-variable warnings in DICOM/Widgets git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26804 3bd1e089-480b-0410-8dfb-8563597acbee -
jcfr authored
This commit fixes the following warning: /home/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkITKTransformConverter.h: In static member function 'static bool vtkITKTransformConverter::SetITKImageFromVTKOrientedGridTransform(vtkObject*, itk::Image<itk::Vector<double, 3u>, 3u>::Pointer&, vtkOrientedGridTransform*)': /home/kitware/Dashboards/Nightly/Slicer-0/Libs/MRML/Core/vtkITKTransformConverter.h:1011:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26803 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26802 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
Following this commit, the maintenance of VTK external project is streamlined. Only VTK7 and VTK9 will be checked out. Setting Slicer_VTK_VERSION_MAJOR to 8 will report an error. git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26801 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
See r26708 git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26800 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
Reported-by:
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jcfr authored
Ignore warning like this one: c:\d\n\slicer-0-build\python-2.7.13\modules\socketmodule.h(26): warning C4005: 'HAVE_SOCKADDR_STORAGE' : macro redefinition [C:\D\N\Slicer-0-build\python-build\CMakeBuild\extensions\extension_socket\extension_socket.vcxproj] [C:\D\N\Slicer-0-build\python.vcxproj] C:\D\N\Slicer-0-build\Python-2.7.13\PC\bdist_wininst\install.c(2086): warning C4133: '=' : incompatible types - from 'BOOL (__cdecl *)(HWND,UINT,WPARAM,LPARAM)' to 'DLGPROC' [C:\D\N\Slicer-0-build\python-build\CMakeBuild\bdist_wininst\bdist_wininst.vcxproj] [C:\D\N\Slicer-0-build\python.vcxproj] git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26798 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
See https://gitlab.kitware.com/vtk/vtk/blob/30ed1845d97f9aac0b83d908e5f7cae4b1c86f3b/CMake/CTestCustom.cmake.in#L146-161 git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26797 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26796 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26795 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
This will address warnings like the following: vtkOpenGLVolumeTextureMapper3D.obj : warning LNK4221: This object file does not define any previously undefined public symbols, so it will not be used by any link operation that consumes this library [C:\D\N\Slicer-0-build\VTKv9-build\Rendering\VolumeOpenGL\vtkRenderingVolumeOpenGLObjects.vcxproj] [C:\D\N\Slicer-0-build\VTKv9.vcxproj] git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26794 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
This commit should suppress warnings like the following: Lua --- /Users/kitware/Dashboards/Nightly/Slicer-0-build/SimpleITK-build/Lua-prefix/src/Lua/src/lauxlib.c:577:61: warning: while loop has empty body [-Wempty-body] while ((c = getc(lf.f)) != EOF && c != LUA_SIGNATURE[0]) ; ^ /Users/kitware/Dashboards/Nightly/Slicer-0-build/SimpleITK-build/Lua-prefix/src/Lua/src/lauxlib.c:577:61: note: put the semicolon on a separate line to silence this warning [-Wempty-body] 1 warning generated. PythonQt -------- /Users/kitware/Dashboards/Nightly/Slicer-0-build/CTK-build/CMakeExternals/Install/include/PythonQt/PythonQtConversion.h:485:23: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] PyObject* items = PyMapping_Items(val); ^ /Users/kitware/Dashboards/Nightly/Slicer-0-build/python-install/include/python2.7/abstract.h:1354:50: note: expanded from macro 'PyMapping_Items' #define PyMapping_Items(O) PyObject_CallMethod(O,"items",NULL) /Users/kitware/Dashboards/Nightly/Slicer-0-build/CTK-build/PythonQt/src/PythonQtConversion.cpp:538:25: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] if (ok && (val >= 0 && val <= UINT_MAX)) { ~~~ ^ ~ ^ /Users/kitware/Dashboards/Nightly/Slicer-0-build/CTK-build/PythonQt/src/PythonQtSlot.cpp:399:19: warning: expression result unused [-Wunused-value] PyObject_INIT(op, &PythonQtSlotFunction_Type); /Users/kitware/Dashboards/Nightly/Slicer-0-build/CTK-build/PythonQt/src/PythonQtSignalReceiver.cpp:234:22: warning: '&&' within '||' [-Wlogical-op-parentheses] if ((foundCount>0) && (sigId == _destroyedSignal1Id) || (sigId == _destroyedSignal2Id)) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ In file included from /home/kitware/Dashboards/Nightly/Slicer-0-build/CTK-build/CMakeExternals/Install/include/PythonQt/PythonQt.h:47:0, from /home/kitware/Dashboards/Nightly/Slicer-0-build/CTK-build/CTK-build/Libs/Core/generated_cpp/org_commontk_CTKCore/org_commontk_CTKCore_init.cpp:6: /home/kitware/Dashboards/Nightly/Slicer-0-build/CTK-build/CMakeExternals/Install/include/PythonQt/PythonQtInstanceWrapper.h: In member function 'PythonQtClassInfo* PythonQtInstanceWrapperStruct::classInfo()': /home/kitware/Dashboards/Nightly/Slicer-0-build/CTK-build/CMakeExternals/Install/include/PythonQt/PythonQtInstanceWrapper.h:68:37: warning: use of old-style cast [-Wold-style-cast] vtkkwiml -------- /home/kitware/Dashboards/Nightly/Slicer-0-build/VTKv9/Utilities/KWIML/vtkkwiml/include/kwiml/abi.h:536:1: warning: use of old-style cast [-Wold-style-cast] git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26793 3bd1e089-480b-0410-8dfb-8563597acbee -
jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26792 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
Since r23070 (ENH: Generalize NUMPY/SimpleITK build system), numpy configure/build/install outputs are captured in files, there is no need to use exceptions. git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26791 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
This commit should fix the following warning: CMake Warning (dev) at /Users/kitware/Dashboards/Nightly/Slicer-0/CMake/BundleUtilitiesWithRPath.cmake:857 (file): Policy CMP0009 is not set: FILE GLOB_RECURSE calls should not follow symlinks by default. Run "cmake --help-policy CMP0009" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /Users/kitware/Dashboards/Nightly/Slicer-0/CMake/BundleUtilitiesWithRPath.cmake:938 (verify_bundle_prerequisites) /Users/kitware/Dashboards/Nightly/Slicer-0/CMake/BundleUtilitiesWithRPath.cmake:835 (verify_app) /Users/kitware/Dashboards/Nightly/Slicer-0-build/Slicer-build/CMake/SlicerCPackBundleFixup/SlicerCPackBundleFixup.cmake:320 (fixup_bundle) /Users/kitware/Dashboards/Nightly/Slicer-0-build/Slicer-build/CMake/SlicerCPackBundleFixup/SlicerCPackBundleFixup.cmake:328 (fixup_bundle_with_plugins) /Users/kitware/Dashboards/Nightly/Slicer-0-build/Slicer-build/CMake/SlicerCPackBundleFixup-binary/cmake_install.cmake:31 (include) /Users/kitware/Dashboards/Nightly/Slicer-0-build/Slicer-build/CMake/LastConfigureStep/cmake_install.cmake:292 (include) /Users/kitware/Dashboards/Nightly/Slicer-0-build/Slicer-build/cmake_install.cmake:57 (include) This warning is for project developers. Use -Wno-dev to suppress it git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26790 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
$ git shortlog 8c4bed5..4292fe0 --no-merges Jean-Christophe Fillion-Robin (1): COMP: Update ctkVTKDiscretizableColorTransferWidget to support C++98 git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26789 3bd1e089-480b-0410-8dfb-8563597acbee -
jcfr authored
List of changes for VTK7: $ git shortlog 57d826c..c19ce17 --no-merges Andras Lasso (1): Fix interactionState computation in SeedWidget List of changes for VTK8: $ git shortlog 71cf316..b796f88 --no-merges Andras Lasso (1): Fix interactionState computation in SeedWidget List of changes for VTK9: $ git shortlog e3f97b0..27c57a1 --no-merges Allison Vacanti (8): Restore Timing functionality for D3/PkTree. Replaced std::set with std::vector/sort/unique in vtkExtractCells. Optimize the PointMap lookup in vtkExtractCells (12.8% speedup in D3). Use a batch copy for points/pointdata in vtkExtractCells. Add a minimum ghost level option to D3. Fix MSVC warning C4512 in KdTree and D3 classes. Deprecate vtkHyperOctreeFractalSource. Deprecate everything that touches vtkHyperOctree. Alvaro Sanchez (1): Fix various build issues of vtkRenderingOptiX. Andras Lasso (1): Fix interactionState computation in SeedWidget Andrew Bauer (4): Fixing vtkExodusIIReader issue with QA record name length Cleanup and improvements for vtkPUnstructuredGridGhostCellsGenerator Pre-incrementing stl iterators instead of post-incrementing Fixing using EGL when kits are enabled Ben Boeckel (48): utf8: remove old import utf8: add an update script utf8: add module infrastructure cmake: use the vtkutf8 module vtkMakeInstantiator: remove support cmake: remove usage of the ABSTRACT property tcl: deprecate for 8.1 vtkJavaUtil: support converting constant arrays to Java vtkOpenGLBufferObject: include missing <string> header vtkOpenGLGL2PSHelperImpl: also don't wrap in Python vtkWrapJava: make empty files for unwrappable classes Common/Core: fix source file property settings Java: follow Python Java: vtkRenderWindowPanel needs vtkCanvas Java: remove `-sourcepath` arguments Utilities/Rpm: remove TclTk: remove old versions vtkPythonInteractiveInterpreter: remove const casting vtkEncodeString: add a module to write a C string for content vtkEncodeString: replace the executable with a CMake script Utilities/EncodeString: deprecate for the vtkEncodeString module vtkX3DExporterXMLWriter: include <string> Testing/External: include vtkEncodeString wrapping: use WRAP_EXCLUDE_PYTHON for the hierarchy wrapping: support creating hierarchy files independently wrapping: remove support for SIP wrapping vtkDataArrayIteratorMacro: don't comment line continuations vtkGenericDataArrayLookupHelper: don't use C++11 initializer lists vtkOStreamWrapper: hide from the wrappers vtkTestDataArray: include vtkObjectFactory.h vtkVariant: include vtkObject.h Common/Core: install the vtkSMPTools header Rendering/GL2PSOpenGL2: set properties consistently qt4: remove support Examples/HyperTree: remove unused example modules: update modules for OpenGL1 removal opengl1: remove OpenGL1-backend modules and examples Maintenance: remove backend switching support opengl1: remove conditional code for the OpenGL1 backend cmake: simplify VTK_RENDERING_BACKEND conditionals vtkXRenderWindowTclInteractor: remove unused class tcl: remove Tcl tests examples: remove Tcl code cmake: remove support for Tcl wrapping tcl: remove support from helper scripts and tools tcl: remove references from comments Rendering/Tk: fix for post-Tcl world Accelerators/Vtkm: don't overwite other job pools Bill Lorensen (13): ENH: More baselines and examples Update WikiExamples.remote.cmake Update WikiExamples.remote.cmake Update WikiExamples.remote.cmake ENH: Fixed baselines ans added new examples. ENH: Bump VTKExamples version ENH: Enable git lfs ENH: Bump VTKExamples version Update WikiExamples.remote.cmake Update WikiExamples.remote.cmake ENH: Bump VTKExamples Update WikiExamples.remote.cmake Update WikiExamples.remote.cmake Bjoern Thiel (1): debug name for python modules on windows Boonthanome Nouanesengsy (1): Improving vtkPUnstructuredGridGhostCellsGenerator filter Cory Quammen (4): Fixed MPI tests specified with custom names Add guards for null XAxis and YAxis. Added parallel connectivity filter Added documentation on parallel connectivity algorithm David E. DeMarle (1): add a quick and dirty material reader GitSetup Upstream (2): GitSetup 2017-10-26 (1639317d) GitSetup 2017-12-01 (91813607) H. Cole Wiley (4): added check for GL_POINT_SPRTIE define using cmakedefine for ANDROID since its not being defined else where applied fixes that allow Android to bind to current EGL context commneted out vtkRegressionTestImage Joachim Pouderoux (1): Add support for vtkMolecule I/O in Programmable Filter & Source. Ken Martin (8): suppress a gcc/boost warning fix issues with the array calc and string arrays fixed case where the array name differed from add an executable to do opengl detection Remove vtkProbeOpebGLSupport executable from Mobile patch from Kathleen S. Biagas fixing opacity update shadow maps to use exponential functions just catching some more places with NULL in them Kenneth Moreland (4): Fix errors with variable names with hyphen in git setup scripts Remove VTK-m includes and libs from test compile Remove references to VTK-m header files from VTK filters Remove direct usage of VTK-m in LOD test Mathieu Westphal (6): Adding opacity support in vtkDiscretizableColorTransferFunction Fix a bug when opening composite table files fix DiscretizableColorTransferFunction legacy typos Adding a vector array parameter to the transform method Fix a missing include of <string> Remove breaks that were genrating warnings Max Smolens (1): COMP: WIP: Fix inconsistent-missing-override warning Menno Deij - van Rijswijk (8): fixed a corner-case out-of-memory crash in polygon builder don't use vtkNew, but do free up unused vtkIdList pre-emptive style guide conformation pre-emptive style guide conformation merge changes don't use vtkNew, but do free up unused vtkIdList pre-emptive style guide conformation pre-emptive style guide conformation Michael Migliore (6): Add quaternion support in vtkOpenGLGlyph3DMapper Fix mapper and create test Fix quaternion glyphs on OpenGL1 Add include to fix build Cosmetic changes Fix OpenGL1 test Mmanu Chaturvedi (1): Fix memory leakage in vtkWrapHierarchy.c Philippe P. Pébaÿ (1): Fixed an initialized-yet-unused-variable warning on Windows Philippe Pébaÿ (3): Fixed issues with the computation of material interfaces in HTG Modified non-regression test for interface reconstruction. Fix two HTG examples and some annoying typos in the documentation. Robert Maynard (3): Correct bugs that the new VTK-m dispatcher type checking has found. Update the VTK-m submodule to get the improved dispatcher code. VTK-m: When building with ninja use job pools to reduce memory usage Sankhesh Jhaveri (12): Provide access to the shader program in UpdateShaderEvent callback Added test that demonstrates ability to set shader uniforms from python Invoke UpdateShaderEvent from volume mapper Fix clear shader replacement issue API to clear all shader replacements Provide access to the shader program in UpdateShaderEvent callback Added test that demonstrates ability to set shader uniforms from python Invoke UpdateShaderEvent from volume mapper Clear all custom shader code in clear shader API Create a default render window for the QVTKOpenGLWidget Port the TestQtSwapWindows test to use modern QVTKOpenGLWidget Add MTime check to rebuild shaders when user replacements change Sean McBride (3): Fixed, again, a slightly incorrect assert Made vtkScalarsToColor::MapValue() return const Replaced many int with vtkTypeBool Shawn Waldon (1): Treat signed and unsigned char data as integers when labeling Steve Pieper (1): BUG: WIP: fix vtkPickingManager interaction with widgets Tiff Upstream (1): tiff 2017-12-05 (818c6fed) Utkarsh Ayachit (33): Fix install/build paths for mpi4py. Add vtkPythonInterpreter to vtkWrappingPythonCore. Python < 2.4 is no longer supported. Remove related code. Cleanup VTK's Python package. Clean Python related CMake variables. Python interpreter fixes. Help static builds find vtk modules. fix VTK module import. another attemp to fix kit build/run issues. Handle VS generator. Help Windows builds find PythonD dlls. Add target for `vtk` python package. Fix path setup when in an App on OsX. Default program name in Python 3 is `python3`. Use default library search order to locate syms. Adding vtkResourceFileLocator Update vtkPythonInterpreter to use vtkResourceFileLocator. Fix importing of VTK Python modules. Don't copy *Python.so files during installation. Improve support for multi-config generators. Don't use deprecated `<CONFIGURATION>`. Fix vtkBuildPath to reflect new Python package locations. Fix incorrect warning message. Plot3D wasn't supporting bigendian. Fixed it. Add missing override. Use relative imports in `vtk` package. Use vtkIdType in vtkMergeCells for indices. Handle long string in vtkDataWriter. Handle spaces in path. Support Python with frozen modules. Make vtkOutputWindow::New create a new instance. Make `vtkpython` output messages to stderr/stdout. Use std::unordered_map & std::unordered_set. Will Schroeder (1): Remove compilation warnings luzpaz (1): Misc. typo fixes utf8cpp Upstream (3): utf8 2017-11-14 (4e3d1c17) utf8 2017-11-15 (f2a3fced) utf8 2017-11-22 (e8de6037) git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26788 3bd1e089-480b-0410-8dfb-8563597acbee -
jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26787 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26786 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
See https://github.com/commontk/CTK/issues/736 List of changes: $ git shortlog cb6f57a..8c4bed5 --no-merges Csaba Pitner (1): BUG: Fixed console paste bug Tristan (2): Improve color table widget Improve ctkSliderWidget and ctkVTKDiscretizableColorTransferWidget git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26785 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
* Use "https" instead of "http" * Remove ITKv3 deprecated setting git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26784 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26783 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
Since Slicer project is not yet added when setting the variable, use CMAKE_CURRENT_SOURCE_DIR instead. git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26782 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
It also adds "UserWarning:" as an error exception. See https://github.com/Radiomics/SlicerRadiomics/issues/23#issuecomment-350298583 git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26781 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
This allows use of the module in extension building python packages. Indeed, since regular CMAKE_(C|CXX)_FLAGS can contain flags incompatible with python packages (e.g "-Wl,--no-undefined"), this commit removes usage of the variable to initialize CFLAGS and CXXFLAGS variables. git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26780 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
This commit ensures that packages installed in directory like "~/.local/" are not imported before Slicer own packages. References: * https://docs.python.org/2/library/site.html#site.getusersitepackages * https://www.python.org/dev/peps/pep-0370/ Reported-by:
Forrest Li <forrest.li@kitware.com> git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26779 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
In case special characters (e.g. in the patient name) ended up being saved in the MRML file, loading the MRML failed due to an XML reading error. These special characters were valid in Slicer, as they were produced by slicer.util.toVTKString. If the character set is specified in the MRML file, then loading is successful. git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26778 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
User may have carefully set up view, so resetting it when switching to Segment Editor module would cause inconvenience. git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26777 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
This change includes a fix so that exported grid transforms are vtkOrientedGridTransform and can be saved in .h5 format. From: Steve Pieper <pieper@isomics.com> git-svn-id: http://svn.slicer.org/Slicer4/branches/Slicer-4-8@26776 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
Since the top-level solution file is always named "Slicer.sln", this commit removes the use of Slicer_MAIN_PROJECT_APPLICATION_NAME variable. Suggested-by:
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jcfr authored
This commit updates the build system so that it: * ensures that python files are packaged * an error is reported if "PYTHON_DIR" variable is not set in SlicerBlockInstallPython Symptom leading to this fix was the following error reported when starting the application: ImportError: No module named site Co-authored-by:
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