- 17 Dec, 2010 1 commit
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zach.mullen authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@15651 3bd1e089-480b-0410-8dfb-8563597acbee
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- 16 Dec, 2010 1 commit
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@15625 3bd1e089-480b-0410-8dfb-8563597acbee
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- 10 Nov, 2010 1 commit
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jcfr authored
Doing so will avoid to use CMAKE_BUILD_TYPE and will ensure the executable associated with the selected configuration type is used. git-svn-id: http://svn.slicer.org/Slicer4/trunk@15243 3bd1e089-480b-0410-8dfb-8563597acbee
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- 28 Oct, 2010 1 commit
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jcfr authored
See http://www.mail-archive.com/cmake@cmake.org/msg22231.html git-svn-id: http://svn.slicer.org/Slicer4/trunk@15182 3bd1e089-480b-0410-8dfb-8563597acbee
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- 25 Oct, 2010 2 commits
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@15162 3bd1e089-480b-0410-8dfb-8563597acbee
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@15154 3bd1e089-480b-0410-8dfb-8563597acbee
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- 07 Oct, 2010 1 commit
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jcfr authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@15113 3bd1e089-480b-0410-8dfb-8563597acbee
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- 07 Sep, 2010 1 commit
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fedorov authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14940 3bd1e089-480b-0410-8dfb-8563597acbee
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- 03 Aug, 2010 1 commit
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fedorov authored
for the output transform git-svn-id: http://svn.slicer.org/Slicer4/trunk@14452 3bd1e089-480b-0410-8dfb-8563597acbee
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- 29 Jul, 2010 1 commit
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14403 3bd1e089-480b-0410-8dfb-8563597acbee
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- 23 Jul, 2010 1 commit
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hjohnson authored
ENH: After much work, an auto-formatting tools that is KWSTYLE compliant has been identified. This tool was applied to the BRAINS source code to make is consistent with the ITK style, and to ensure that it is easy to read across all tools. In addition, the code base was syncronized with the primary SVN repository. git-svn-id: http://svn.slicer.org/Slicer4/trunk@14324 3bd1e089-480b-0410-8dfb-8563597acbee
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- 22 Jul, 2010 1 commit
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fedorov authored
colormap git-svn-id: http://svn.slicer.org/Slicer4/trunk@14307 3bd1e089-480b-0410-8dfb-8563597acbee
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- 18 Jul, 2010 2 commits
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fedorov authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14210 3bd1e089-480b-0410-8dfb-8563597acbee
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fedorov authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14209 3bd1e089-480b-0410-8dfb-8563597acbee
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- 16 Jul, 2010 1 commit
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fedorov authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14207 3bd1e089-480b-0410-8dfb-8563597acbee
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- 14 Jul, 2010 1 commit
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fedorov authored
than CenterOfHead, and may be more universally applicable for non-brain applications. ENH: exposed CenterOfROI in BRAINSFitIGT git-svn-id: http://svn.slicer.org/Slicer4/trunk@14150 3bd1e089-480b-0410-8dfb-8563597acbee
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- 13 Jul, 2010 1 commit
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fedorov authored
When requested, warped grid is created only if the transform has bspline or roi bspline component. Warp grid spacing is initialized from the bspline grid spacing used in the bspline transform git-svn-id: http://svn.slicer.org/Slicer4/trunk@14144 3bd1e089-480b-0410-8dfb-8563597acbee
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- 08 Jul, 2010 5 commits
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fedorov authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14080 3bd1e089-480b-0410-8dfb-8563597acbee
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fedorov authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14079 3bd1e089-480b-0410-8dfb-8563597acbee
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fedorov authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14078 3bd1e089-480b-0410-8dfb-8563597acbee
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fedorov authored
applicable for the intended use cases. git-svn-id: http://svn.slicer.org/Slicer4/trunk@14077 3bd1e089-480b-0410-8dfb-8563597acbee
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fedorov authored
support registration for image-guided procedures. The main differences from BRAINSFit are: 1) ROIBSpline mode is added, so that the bspline grid is initialized to cover just the bounding box of the aligned ROIs of the input images. Support for ROIBspline has been added to BRAINSFitHelper earlier. 2) The user is given an option to maintain the list of all the intermediate transforms to facilitate debugging in the case of registration failure. 3) Default bspline grid size is changed to 3x3x3, which may be sufficient for prostate registration. git-svn-id: http://svn.slicer.org/Slicer4/trunk@14076 3bd1e089-480b-0410-8dfb-8563597acbee
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- 07 Jul, 2010 1 commit
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fedorov authored
of BSpline transform. If requested, the bspline grid will be initialized just for the bounding box of the joined fixed binary mask and initially aligned moving binary mask. The resampled image will use the bspline transform restricted to the bounding box region, with no deformation outside. ENH: Added m_GenericTransformList to BRAINSFitHelper to maintain the list of all the intermediate transforms. This feature will be used by a customized BRAINSFit version to support registration (specifically, debugging of registration) during image-guided procedures. git-svn-id: http://svn.slicer.org/Slicer4/trunk@14070 3bd1e089-480b-0410-8dfb-8563597acbee
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- 03 Jul, 2010 1 commit
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fedorov authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14022 3bd1e089-480b-0410-8dfb-8563597acbee
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- 01 Jul, 2010 1 commit
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fedorov authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@14008 3bd1e089-480b-0410-8dfb-8563597acbee
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- 22 Jun, 2010 1 commit
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13913 3bd1e089-480b-0410-8dfb-8563597acbee
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- 08 Jun, 2010 1 commit
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fedorov authored
formatting) git-svn-id: http://svn.slicer.org/Slicer4/trunk@13702 3bd1e089-480b-0410-8dfb-8563597acbee
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- 07 Jun, 2010 1 commit
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13676 3bd1e089-480b-0410-8dfb-8563597acbee
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- 03 Jun, 2010 3 commits
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13624 3bd1e089-480b-0410-8dfb-8563597acbee
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13613 3bd1e089-480b-0410-8dfb-8563597acbee
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13608 3bd1e089-480b-0410-8dfb-8563597acbee
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- 02 Jun, 2010 1 commit
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hjohnson authored
ENH: Added feature to BRAINSResample that allows grid lines to be created in the image. ENH: Made test cases more tolerant of slight image difference due to numerical precision. git-svn-id: http://svn.slicer.org/Slicer4/trunk@13594 3bd1e089-480b-0410-8dfb-8563597acbee
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- 31 May, 2010 1 commit
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13571 3bd1e089-480b-0410-8dfb-8563597acbee
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- 30 May, 2010 1 commit
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hjohnson authored
In response to numerous constructive critisms of the newly added suite of BRAINSTools, a code review was performed in order to make the applications work consistenently and with similar user interfaces. Summary of ChangeLog: -Instrumented xml files so that moving images are properly associated with their transforms in the Slicer3 MRML Interface. -Made command line arguments consistent across tools for specifying images, transforms, similar parameters. -Hid many advanced command line arguments from standard user interface when used from Slicer3 -Improved documentation of command line arguments to describe better what the intended purpose, and restrictions on use are. -Added common set of image resample/warping options across all tools so that all tools provide common interface for choosing outputPixelType and interpolation mode -Fixed reading and writing of transforms to use a common read/write paradigm, to be consistent across all tools, and to be compatible with Slicer3 (i.e. Write out Bspline transforms with the bulk transform given second). -Increased code coverage by merging common functionality that existed in each tool separately into the BRAINSCommonLIb, thus removing code, and ensuring that exactly the same behavior was done across all tools. -Worked around bug where ITK LSBFGSB optimizer does not properly return the number of iterations performed, This improperly reported that Bspline registrations were never done when doing a Bspline registration alone. -Improved source code documentation for commonly used functions. git-svn-id: http://svn.slicer.org/Slicer4/trunk@13566 3bd1e089-480b-0410-8dfb-8563597acbee
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- 27 May, 2010 2 commits
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13517 3bd1e089-480b-0410-8dfb-8563597acbee
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13515 3bd1e089-480b-0410-8dfb-8563597acbee
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- 26 May, 2010 2 commits
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hjohnson authored
ENH: Reset baseline images to represent the algorithm in the new state. Results have been validated with visual inspection as being virtually identical to the previous cases, but the recent improvements have slightly changed the behavior at the very edges of the images. git-svn-id: http://svn.slicer.org/Slicer4/trunk@13503 3bd1e089-480b-0410-8dfb-8563597acbee
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13500 3bd1e089-480b-0410-8dfb-8563597acbee
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- 25 May, 2010 1 commit
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hjohnson authored
ENH: Many code cleanups and simplificaitons to make the maintenance much easier over time. Added requested features. git-svn-id: http://svn.slicer.org/Slicer4/trunk@13498 3bd1e089-480b-0410-8dfb-8563597acbee
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- 24 May, 2010 1 commit
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hjohnson authored
git-svn-id: http://svn.slicer.org/Slicer4/trunk@13463 3bd1e089-480b-0410-8dfb-8563597acbee
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