<?xml version="1.0" encoding="utf-8"?>
<executable>
  <category>Tractography.Stochastic</category>
  <title>Generate Connectivity Map</title>
  <description>
  Generates a volume where the value of each voxel is the number of fibers which pass through that voxel divided by the total number of sampled fibers.
  This value can been interpreted as the probability that a particular voxel is connected to the seed ROI by a fiber tract.
  </description>
  <version>1.0</version>
  <license></license>
  <contributor>Tri Ngo (tringo@gmail.com)</contributor>

  <parameters>
    <label>
    Generate Connectivity Map Parameters
    </label>
    <description>
    Parameters for the Stochastic Tractography algorithm
    </description>
  </parameters>

  <parameters>
    <label>IO</label>
    <description>Input/output parameters</description>
    <file>
      <name>tractsfilename</name>
      <label>Input Tracts</label>
      <channel>input</channel>
      <index>0</index>
      <description>Input tracts as VTK XML Polydata file</description>
    </file>
    <image type="diffusion-weighted">
      <name>dwifilename</name>
      <label>Input Volume</label>
      <channel>input</channel>
      <index>1</index>
      <description>Input DWI volume</description>
    </image>
    <image>
      <name>ncmapfilename</name>
      <label>Output Volume</label>
      <channel>output</channel>
      <index>2</index>
      <description>Normalized Connectivity Map Output</description>
    </image>
  </parameters>

</executable>
