<?xml version="1.0" encoding="utf-8"?>
<executable>
  <category>Surface Models</category>
  <title>FreesurferSurfaceSectionExtraction</title>
  <description>This module creates gray matter models based on fiducials on a freesurfer generated white matter surface.</description>
  <version>
           1.0</version>
  <documentation-url></documentation-url>
  <license></license>
  <contributor>Katharina Quintus </contributor>
  <acknowledgements> This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. </acknowledgements>
 <parameters>
    <label>Input</label>
      <description>Input parameters</description> 
       
       <geometry>
        <name>lh_orig</name>
	<label>white matter model left side</label>
	<channel>input</channel>
	<index>0</index>
	<default>None</default>
	<description>Freesurfer white matter model of the left hemishere</description>
       </geometry>
   
    <geometry>
      <name>lr_orig</name>
      <label>white matter model right side</label>
      <channel>input</channel>
      <index>0</index>
      <default>None</default>
      <description>Freesurfer white matter model of the right hemishere</description>
    </geometry>

    <point multiple="true">
      <name>fiducials_rh</name>
      <label>Fiducial list for right hemisphere</label>
      <longflag>--fiducials_lh</longflag>
      <description>Fiducial list for right hemisphere</description>
      
    </point>

    <point multiple="true">
      <name>fiducials_lh</name>
      <label>Fiducial list for left hemisphere</label>
      <longflag>--fiducials_rh</longflag>
      <description>>Fiducial list for left hemisphere</description>
    </point>

 
</parameters>

 <parameters>
    <label>Output</label>
    <description>output parameters</description>
       
      <geometry>
      <name>grayMatterROI_lh</name>
      <label>Graymatter selection left hemisphere</label>
      <channel>output</channel>
      <index>1</index>
      <default>None</default>
      <description>Graymatter surface selection on left hemisphere</description>
      </geometry>

      <geometry>
      <name>grayMatterROI_rh</name>
      <label>Graymatter selection right hemisphere</label>
      <channel>output</channel>
      <index>1</index>
      <default>None</default>
      <description>Graymatter surface selection on right hemisphere</description>
      </geometry>

</parameters>



</executable>
