#ifndef vtkNIFTIImagePrivate_h
#define vtkNIFTIImagePrivate_h

/*****************************************************************************
 ** This file defines the "NIFTI-1" header format.               **
 ** It is derived from 2 meetings at the NIH (31 Mar 2003 and    **
 ** 02 Sep 2003) of the Data Format Working Group (DFWG),        **
 ** chartered by the NIfTI (Neuroimaging Informatics Technology  **
 ** Initiative) at the National Institutes of Health (NIH).      **
 **--------------------------------------------------------------**
 ** Neither the National Institutes of Health (NIH), the DFWG,   **
 ** nor any of the members or employees of these institutions    **
 ** imply any warranty of usefulness of this material for any    **
 ** purpose, and do not assume any liability for damages,        **
 ** incidental or otherwise, caused by any use of this document. **
 ** If these conditions are not acceptable, do not use this!     **
 **--------------------------------------------------------------**
 ** Author:   Robert W Cox (NIMH, Bethesda)                      **
 ** Advisors: John Ashburner (FIL, London),                      **
 **           Stephen Smith (FMRIB, Oxford),                     **
 **           Mark Jenkinson (FMRIB, Oxford)                     **
 ******************************************************************************/

/*=================*/
#ifdef __cplusplus
extern "C"
{
#endif
  /*=================*/

  /*! \struct nifti_1_header
      \brief Data structure defining the fields in the nifti1 header.
             This binary header should be found at the beginning of a valid
             NIFTI-1 header file.
   */
  /*************************/ /************/
  struct nifti_1_header
  { /* NIFTI-1 usage         */ /*  offset  */
    /*************************/ /************/

    int sizeof_hdr; /*!< MUST be 348           */             /*   0 */
    char data_type[10]; /*!< ++UNUSED++            */         /*   4 */
    char db_name[18]; /*!< ++UNUSED++            */           /*  14 */
    int extents; /*!< ++UNUSED++            */                /*  32 */
    short session_error; /*!< ++UNUSED++            */        /*  36 */
    char regular; /*!< ++UNUSED++            */               /*  38 */
    char dim_info; /*!< MRI slice ordering.   */              /*  39 */
    short dim[8]; /*!< Data array dimensions.*/               /*  40 */
    float intent_p1; /*!< 1st intent parameter. */            /*  56 */
    float intent_p2; /*!< 2nd intent parameter. */            /*  60 */
    float intent_p3; /*!< 3rd intent parameter. */            /*  64 */
    short intent_code; /*!< NIFTI_INTENT_* code.  */          /*  68 */
    short datatype; /*!< Defines data type!    */             /*  70 */
    short bitpix; /*!< Number bits/voxel.    */               /*  72 */
    short slice_start; /*!< First slice index.    */          /*  74 */
    float pixdim[8]; /*!< Grid spacings.        */            /*  76 */
    float vox_offset; /*!< Offset into .nii file */           /* 108 */
    float scl_slope; /*!< Data scaling: slope.  */            /* 112 */
    float scl_inter; /*!< Data scaling: offset. */            /* 116 */
    short slice_end; /*!< Last slice index.     */            /* 120 */
    char slice_code; /*!< Slice timing order.   */            /* 122 */
    char xyzt_units; /*!< Units of pixdim[1..4] */            /* 123 */
    float cal_max; /*!< Max display intensity */              /* 124 */
    float cal_min; /*!< Min display intensity */              /* 128 */
    float slice_duration; /*!< Time for 1 slice.     */       /* 132 */
    float toffset; /*!< Time axis shift.      */              /* 136 */
    int glmax; /*!< ++UNUSED++            */                  /* 140 */
    int glmin; /*!< ++UNUSED++            */                  /* 144 */
    char descrip[80]; /*!< any text you like.    */           /* 148 */
    char aux_file[24]; /*!< auxiliary filename.   */          /* 228 */
    short qform_code; /*!< NIFTI_XFORM_* code.   */           /* 252 */
    short sform_code; /*!< NIFTI_XFORM_* code.   */           /* 254 */
    float quatern_b; /*!< Quaternion b param.   */            /* 256 */
    float quatern_c; /*!< Quaternion c param.   */            /* 260 */
    float quatern_d; /*!< Quaternion d param.   */            /* 264 */
    float qoffset_x; /*!< Quaternion x shift.   */            /* 268 */
    float qoffset_y; /*!< Quaternion y shift.   */            /* 272 */
    float qoffset_z; /*!< Quaternion z shift.   */            /* 276 */
    float srow_x[4]; /*!< 1st row affine transform.   */      /* 280 */
    float srow_y[4]; /*!< 2nd row affine transform.   */      /* 296 */
    float srow_z[4]; /*!< 3rd row affine transform.   */      /* 312 */
    char intent_name[16]; /*!< 'name' or meaning of data.  */ /* 328 */
    char magic[4]; /*!< MUST be "ni1\0" or "n+1\0". */        /* 344 */

  }; /**** 348 bytes total ****/

  typedef struct nifti_1_header nifti_1_header;

  /*---------------------------------------------------------------------------*/
  /* TYPE OF DATA (acceptable values for datatype field):
     ---------------------------------------------------
     Values of datatype smaller than 256 are ANALYZE 7.5 compatible.
     Larger values are NIFTI-1 additions.  These are all multiples of 256, so
     that no bits below position 8 are set in datatype.  But there is no need
     to use only powers-of-2, as the original ANALYZE 7.5 datatype codes do.

     The additional codes are intended to include a complete list of basic
     scalar types, including signed and unsigned integers from 8 to 64 bits,
     floats from 32 to 128 bits, and complex (float pairs) from 64 to 256 bits.

     Note that most programs will support only a few of these datatypes!
     A NIFTI-1 program should fail gracefully (e.g., print a warning message)
     when it encounters a dataset with a type it doesn't like.
  -----------------------------------------------------------------------------*/

  /*! \defgroup NIFTI1_DATATYPE_ALIASES NIFTI Datatype Aliases
      \brief aliases for the nifti1 datatype codes
      @{
   */
  /*! unsigned char. */
#define NIFTI_TYPE_UINT8 2
  /*! signed short. */
#define NIFTI_TYPE_INT16 4
  /*! signed int. */
#define NIFTI_TYPE_INT32 8
  /*! 32 bit float. */
#define NIFTI_TYPE_FLOAT32 16
  /*! 64 bit complex = 2 32 bit floats. */
#define NIFTI_TYPE_COMPLEX64 32
  /*! 64 bit float = double. */
#define NIFTI_TYPE_FLOAT64 64
  /*! 3 8 bit bytes. */
#define NIFTI_TYPE_RGB24 128
  /*! signed char. */
#define NIFTI_TYPE_INT8 256
  /*! unsigned short. */
#define NIFTI_TYPE_UINT16 512
  /*! unsigned int. */
#define NIFTI_TYPE_UINT32 768
  /*! signed long long. */
#define NIFTI_TYPE_INT64 1024
  /*! unsigned long long. */
#define NIFTI_TYPE_UINT64 1280
  /*! 128 bit float = long double. */
#define NIFTI_TYPE_FLOAT128 1536
  /*! 128 bit complex = 2 64 bit floats. */
#define NIFTI_TYPE_COMPLEX128 1792
  /*! 256 bit complex = 2 128 bit floats */
#define NIFTI_TYPE_COMPLEX256 2048
  /*! 4 8 bit bytes. */
#define NIFTI_TYPE_RGBA32 2304
  /* @} */

  /*---------------------------------------------------------------------------*/
  /* MISCELLANEOUS C MACROS
  -----------------------------------------------------------------------------*/

  /*.................*/
  /*! Given a nifti_1_header struct, check if it has a good magic number.
      Returns NIFTI version number (1..9) if magic is good, 0 if it is not. */

#define NIFTI_VERSION(h)                                                                           \
  (((h).magic[0] == 'n' && (h).magic[3] == '\0' && ((h).magic[1] == 'i' || (h).magic[1] == '+') && \
     ((h).magic[2] >= '1' && (h).magic[2] <= '9'))                                                 \
      ? (h).magic[2] - '0'                                                                         \
      : 0)

  /*.................*/
  /*! Check if a nifti_1_header struct says if the data is stored in the
      same file or in a separate file.  Returns 1 if the data is in the same
      file as the header, 0 if it is not.                                   */

#define NIFTI_ONEFILE(h) ((h).magic[1] == '+')

  /*.................*/
  /*! Check if a nifti_1_header struct needs to be byte swapped.
      Returns 1 if it needs to be swapped, 0 if it does not.     */

#define NIFTI_NEEDS_SWAP(h) ((h).dim[0] < 0 || (h).dim[0] > 7)

/*=================*/
#ifdef __cplusplus
}
#endif
/*=================*/

/*---------------------------------------------------------------------------*/
/* Changes to the header from NIFTI-1 to NIFTI-2 are intended to allow for
   larger and more accurate fields.  The changes are as follows:

      - short dim[8]         -> int64_t dim[8]
      - float intent_p1,2,3  -> double intent_p1,2,3    (3 fields)
      - float pixdim[8]      -> double pixdim[8]
      - float vox_offset     -> int64_t vox_offset
      - float scl_slope      -> double scl_slope
      - float scl_inter      -> double scl_inter
      - float cal_max        -> double cal_max
      - float cal_min        -> double cal_min
      - float slice_duration -> double slice_duration
      - float toffset        -> double toffset
      - short slice_start    -> int64_t slice_start
      - short slice_end      -> int64_t slice_end
      - char slice_code      -> int32_t slice_code
      - char xyzt_units      -> int32_t xyzt_units
      - short intent_code    -> int32_t intent_code
      - short qform_code     -> int32_t qform_code
      - short sform_code     -> int32_t sform_code
      - float quatern_b,c,d  -> double quatern_b,c,d    (3 fields)
      - float srow_x,y,z[4]  -> double srow_x,y,z[4]    (3 fields)
      - char magic[4]        -> char magic[8]
      - char unused_str[15]  -> padding added at the end of the header

      - previously unused fields have been removed:
           data_type, db_name, extents, session_error, regular, glmax, glmin

      - the field ordering has been changed
-----------------------------------------------------------------------------*/

/*=================*/
#ifdef __cplusplus
extern "C"
{
#endif
  /*=================*/

  /*! \struct nifti_2_header
      \brief Data structure defining the fields in the nifti2 header.
             This binary header should be found at the beginning of a valid
             NIFTI-2 header file.
   */

  /*************************/ /************/
  struct nifti_2_header
  { /* NIFTI-2 usage         */                              /*  offset  */
    /*************************/                              /************/
    int sizeof_hdr; /*!< MUST be 540           */            /*   0 */
    char magic[8]; /*!< MUST be valid signature. */          /*   4 */
    short datatype; /*!< Defines data type!    */            /*  12 */
    short bitpix; /*!< Number bits/voxel.    */              /*  14 */
    long long dim[8]; /*!< Data array dimensions.*/          /*  16 */
    double intent_p1; /*!< 1st intent parameter. */          /*  80 */
    double intent_p2; /*!< 2nd intent parameter. */          /*  88 */
    double intent_p3; /*!< 3rd intent parameter. */          /*  96 */
    double pixdim[8]; /*!< Grid spacings.        */          /* 104 */
    long long vox_offset; /*!< Offset into .nii file */      /* 168 */
    double scl_slope; /*!< Data scaling: slope.  */          /* 176 */
    double scl_inter; /*!< Data scaling: offset. */          /* 184 */
    double cal_max; /*!< Max display intensity */            /* 192 */
    double cal_min; /*!< Min display intensity */            /* 200 */
    double slice_duration; /*!< Time for 1 slice.     */     /* 208 */
    double toffset; /*!< Time axis shift.      */            /* 216 */
    long long slice_start; /*!< First slice index.    */     /* 224 */
    long long slice_end; /*!< Last slice index.     */       /* 232 */
    char descrip[80]; /*!< any text you like.    */          /* 240 */
    char aux_file[24]; /*!< auxiliary filename.   */         /* 320 */
    int qform_code; /*!< NIFTI_XFORM_* code.   */            /* 344 */
    int sform_code; /*!< NIFTI_XFORM_* code.   */            /* 348 */
    double quatern_b; /*!< Quaternion b param.   */          /* 352 */
    double quatern_c; /*!< Quaternion c param.   */          /* 360 */
    double quatern_d; /*!< Quaternion d param.   */          /* 368 */
    double qoffset_x; /*!< Quaternion x shift.   */          /* 376 */
    double qoffset_y; /*!< Quaternion y shift.   */          /* 384 */
    double qoffset_z; /*!< Quaternion z shift.   */          /* 392 */
    double srow_x[4]; /*!< 1st row affine transform. */      /* 400 */
    double srow_y[4]; /*!< 2nd row affine transform. */      /* 432 */
    double srow_z[4]; /*!< 3rd row affine transform. */      /* 464 */
    int slice_code; /*!< Slice timing order.   */            /* 496 */
    int xyzt_units; /*!< Units of pixdim[1..4] */            /* 500 */
    int intent_code; /*!< NIFTI_INTENT_* code.  */           /* 504 */
    char intent_name[16]; /*!< 'name' or meaning of data. */ /* 508 */
    char dim_info; /*!< MRI slice ordering.   */             /* 524 */
    char unused_str[15]; /*!< unused, filled with \0 */      /* 525 */
  };                                                         /**** 540 bytes total ****/

  typedef struct nifti_2_header nifti_2_header;

/*=================*/
#ifdef __cplusplus
}
#endif
/*=================*/

#endif /* vtkNIFTIImagePrivate_h */
// VTK-HeaderTest-Exclude: vtkNIFTIImagePrivate.h
