- 19 Oct, 2020 3 commits
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Burlen Loring authored
bug fixes for 3.2.1 See merge request !234
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Burlen Loring authored
don't use vtk XML writers without ENABLE_VTK_IO See merge request !233
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Burlen Loring authored
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- 25 Jun, 2020 1 commit
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Burlen Loring authored
Release 3.2.0 See merge request !232 Release notes: This release contains ADIOS2 work. It is also a sync point with AMReX codes. Now AMReX and WarpX development branches are tested and working. In addition this release contains bug fixes for VTK I/O, Ascent, HDF5, and sensei_config. 1 c1ba0968 sensei_config remove spaces in link dependencies 2 9757d421 (origin/fix_sensei_config_warning, fix_sensei_config_warning) fix sensei_config warning 3 9c987ffc added std:: to i/ostreams 4 9c18ee18 added filename for supported xml attribute name 5 958d3e5a removed ADIOS1 traces 6 f8aff402 fix a typo in ascent adaptor 7 def834ca (origin/sensei_3_amrex, sensei_3_amrex) amr metadata validations 8 a511934a adios2 fix miultiple defines 9 9989a428 check adios2 calls for errors 10 0a2edb11 XML attributes to set ADIOS 2 buffering 11 a89934b5 IsoSurfacePartitioner write domain decomp in vtu format 12 e32e7655 Add an XML option to ADIOS2 to specify the reader connection timeout 13 567131a2 sensei_config get compiler from environment 14 72298fcf only find MPI C library 15 5930c5ea work around a bug in ADISO2 cmake code 16 86289037 Added BlockLevel in slice extract VTK output 17 ac229e6f always request ghost cells for AMR meshes 18 88682d49 VTKPosthocIO dont write datasets that have no cells 19 df340bec fix indexing bug for AMR data in SliceExtract 20 28e902ac improve metadata validations 21 e3238528 fixes to ADISO2 schema for AMR 22 5a29cf7c disable experimentatal miniapps by default and mark them as experimental 23 bbc5178d update the version number with every configure pass 24 46d71432 use ADIOS2_DIR in CMake export config 25 1b11270d expose version in sensei_config 26 cb477c18 fix bad error check in VTKUtils 27 a98dd16a (origin/macos_fixes_for_ci) Python fixes and improvements 28 e6e7151a use Python 3 by default 29 51724e12 don't enable VTK_RENDERING by default 30 e8c3114f make oscillator VTK writer test depend on VTK_IO 31 d66503ff make mandelbrot VTK writer test depend on VTK_MPI 32 1412cb31 fix a warning in ADIOS2 schema 33 752d720b move cdash site form hpcvis to nersc 34 ffe93461 (origin/fix_ghost_cell_name, fix_ghost_cell_name) fix a crash when compiled against Debug build of VTK 35 425203bb Add regression tests for ADISO2 M x N 36 68922049 configurable analysis plumbing for adios2 37 1fe2d8ec make send/receive ADIOS2 XML symetric 38 a62d6da1 cleanup left over cmake code from old external diy 39 63526f47 adios2 integer type for selections 40 bb002891 clean up profiler macros 41 2df4af27 remove adios2 end-point 42 48732c1c apply profiler updates to adios2 work and minor cleanup 43 56538ee9 Removing prints and adding ability to set adios2 parameters. 44 b4c8bb63 Adding another testing file. 45 a674d4c3 Updates to get SST working initially. 46 4b9d878f Updates to get BP working and starting debug of sst. 47 2970669a More updates to get adios2 integrated and fully building. 48 9e063150 Working on adios2 rea updates. 49 60364460 Updating a bunch of adios2 write stuff from adios1 version. 50 7ff0dcb6 More adios2 updates using C bindings API from ADIOS2... 51 8f73f202 Adding some initial ADIOS2 files and cmake logic.
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- 26 May, 2020 3 commits
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Burlen Loring authored
more cleanup See merge request !231
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Burlen Loring authored
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Burlen Loring authored
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- 23 May, 2020 5 commits
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Burlen Loring authored
last minute cleanup See merge request !230
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Junmin Gu authored
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Junmin Gu authored
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Junmin Gu authored
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Burlen Loring authored
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- 22 May, 2020 2 commits
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Burlen Loring authored
AMReX and ADIOS2 related updates See merge request !228
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Burlen Loring authored
makes BlocksPerLev, RefRatio, and BlockLevel associated with BlockDecom flag. If the BlockDecomp flags is set, then those fields are checked during validation.
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- 18 Mar, 2020 1 commit
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Burlen Loring authored
fixes instances of multiple defines (the adios1 pattern). define once, build up book keeping info to setup selections for each block's data.
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- 16 Mar, 2020 1 commit
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Burlen Loring authored
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- 05 Mar, 2020 1 commit
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Burlen Loring authored
* buffer_size sets the number of steps to buffer (QueueLimit) * buffer_mode sets the mode to either Block or Discard (QueueFullPolicy)
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- 04 Mar, 2020 2 commits
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Burlen Loring authored
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Burlen Loring authored
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- 27 Feb, 2020 3 commits
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Burlen Loring authored
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Burlen Loring authored
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Burlen Loring authored
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- 25 Feb, 2020 1 commit
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Burlen Loring authored
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- 21 Feb, 2020 10 commits
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Burlen Loring authored
this is because ghost cell arrays are used for both masking ghost cells and masking covered levels. A simulation with 0 ghost cells and more than 1 level needs the ghopst cells array. An example of this is the miniapp that ships with AMR that we use for the tutorial.
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Burlen Loring authored
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Burlen Loring authored
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Burlen Loring authored
* check the fields that are required (bug fix) * check per block fields for the correct length * check array fields for the correct length * check the per block per array fields for the correct length these checks verify that you won't run off the end of an array but do not check the validity of the values provided
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Burlen Loring authored
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Burlen Loring authored
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Burlen Loring authored
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Burlen Loring authored
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Burlen Loring authored
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Burlen Loring authored
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- 18 Feb, 2020 7 commits
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Burlen Loring authored
Macos fixes for ci See merge request !227
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Burlen Loring authored
* force .so for extension SWIG'ed PythonAnalysis module on MacOS. This seems to be necessary for the import to work and is consistent with CMake's PYTHON_ADD_MODULE function * Use RPATH so that the SENSEI library directory need not be in the LD/DYLD_LIBRARY_PATH when importing the senseiPython module. However, note that we still need the SENSEI library directory in the PYTHONPATH.
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Burlen Loring authored
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Burlen Loring authored
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Burlen Loring authored
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Burlen Loring authored
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Burlen Loring authored
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