GitLab

more cleanup

See merge request !231

last minute cleanup

See merge request !230

AMReX and ADIOS2 related updates

See merge request !228

makes BlocksPerLev, RefRatio, and BlockLevel associated with BlockDecom
flag. If the BlockDecomp flags is set, then those fields are checked
during validation.

fixes instances of multiple defines (the adios1 pattern).
define once, build up book keeping info to setup selections
for each block's data.

* buffer_size sets the number of steps to buffer (QueueLimit)
* buffer_mode sets the mode to either Block or Discard (QueueFullPolicy)

this is because ghost cell arrays are used for both masking ghost cells
and masking covered levels. A simulation with 0 ghost cells and more
than 1 level needs the ghopst cells array. An example of this is the
miniapp that ships with AMR that we use for the tutorial.

* check the fields that are required (bug fix)
* check per block fields for the correct length
* check array fields for the correct length
* check the per block per array fields for the
  correct length

these checks verify that you won't run off the end of an
array but do not check the validity of the values provided

Macos fixes for ci

See merge request !227

* force .so for extension SWIG'ed PythonAnalysis module on MacOS. This seems to
  be necessary for the import to work and is consistent with CMake's
  PYTHON_ADD_MODULE function

* Use RPATH so that the SENSEI library directory need not be in the
  LD/DYLD_LIBRARY_PATH when importing the senseiPython module. However, note
  that we still need the SENSEI library directory in the PYTHONPATH.

fix a crash when compiled against Debug build of VTK

See merge request !226

If you set an array named vtkGhostType it is cahced in vtkDataSet. Any
chnages like removing this array or renaming it require that cached
value to be updated otherwise an assert will crash.

Adios2 in transit

See merge request !221