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Commit efac93cd authored by Utkarsh Ayachit's avatar Utkarsh Ayachit ⛰ Committed by Code Review
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Merge topic 'Remove_SESAMEReader' into master 

ba45df80 BUG: Remove broken vtkSESAMEReader
parents 07da0477 ba45df80
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IO/Geometry/CMakeLists.txt
View file @ efac93cd
......@@ -21,7 +21,6 @@ SET(Module_SRCS
vtkPDBReader.cxx
vtkPlot3DMetaReader.cxx
vtkProStarReader.cxx
vtkSESAMEReader.cxx
vtkSTLReader.cxx
vtkSTLWriter.cxx
vtkTecplotReader.cxx
......
IO/Geometry/vtkSESAMEReader.cxx deleted 100644 → 0
View file @ 07da0477
/*
* Copyright 2004 Sandia Corporation.
* Under the terms of Contract DE-AC04-94AL85000, there is a non-exclusive
* license for use of this work by or on behalf of the
* U.S. Government. Redistribution and use in source and binary forms, with
* or without modification, are permitted provided that this Notice and any
* statement of authorship are reproduced on all copies.
*/
#include "vtkSESAMEReader.h"
#include "vtkInformation.h"
#include "vtkInformationVector.h"
#include "vtkStreamingDemandDrivenPipeline.h"
#include <vtkFloatArray.h>
#include <vtkIntArray.h>
#include <vtkObjectFactory.h>
#include <vtkPointData.h>
#include <vtkRectilinearGrid.h>
#include <vector>
#include <string>
vtkStandardNewMacro(vtkSESAMEReader);
static const int SESAME_NUM_CHARS = 512;
static const char* TableLineFormat = "%2i%6i%6i";
class vtkSESAMEReader::MyInternal
{
public:
std::string FileName;
FILE* File;
std::vector<int> TableIds;
std::vector<long> TableLocations;
vtkIdType TableId;
std::vector<std::string> TableArrays;
std::vector<int> TableArrayStatus;
vtkIntArray* TableIdsArray;
void ClearTables()
{
this->TableIds.clear();
this->TableId = -1;
this->TableIdsArray->Initialize();
this->ClearArrays();
}
void ClearArrays()
{
this->TableArrays.clear();
this->TableArrayStatus.clear();
}
MyInternal()
{
this->File = NULL;
this->TableId = -1;
this->TableIdsArray = vtkIntArray::New();
}
~MyInternal()
{
this->TableIdsArray->Delete();
}
};
// structures to hold information about SESAME files
static const int MaxTableArrays = 10;
struct vtkSESAMETableDef
{
int TableId;
const char* Arrays[MaxTableArrays];
};
static const vtkSESAMETableDef TableDefs[] =
{
{301,
{"301: Total EOS (Pressure)",
"301: Total EOS (Energy)",
"301: Total EOS (Free Energy)",
0} // keep 0 last
},
{303,
{"303: Total EOS (Pressure)",
"303: Total EOS (Energy)",
"303: Total EOS (Free Energy)",
0} // keep 0 last
},
{304,
{"304: Electron EOS (Pressure)",
"304: Electron EOS (Energy)",
"304: Electron EOS (Free Energy)",
0} // keep 0 last
},
{305,
{"305: Total EOS (Pressure)",
"305: Total EOS (Energy)",
"305: Total EOS (Free Energy)",
0} // keep 0 last
},
{306,
{"306: Total EOS (Pressure)",
"306: Total EOS (Energy)",
"306: Total EOS (Free Energy)",
0} // keep 0 last
},
{502,
{"502: Rosseland Mean Opacity",
0} // keep 0 last
},
{503,
{"503: Electron Conductive Opacity1",
0} // keep 0 last
},
{504,
{"504: Mean Ion Charge1",
0} // keep 0 last
},
{505,
{"505: Planck Mean Opacity",
0} // keep 0 last
},
{601,
{"601: Mean Ion Charge2",
0} // keep 0 last
},
{602,
{"602: Electrical Conductivity",
0} // keep 0 last
},
{603,
{"603: Thermal Conductivity",
0} // keep 0 last
},
{604,
{"604: Thermoelectric Coefficient",
0} // keep 0 last
},
{605,
{"605: Electron Conductive Opacity2",
0} // keep 0 last
}
};
static int TableIndex(int tableId)
{
// check that we got a valid table id
for(unsigned int i=0; i<sizeof(TableDefs)/sizeof(vtkSESAMETableDef); i++)
{
if(tableId == TableDefs[i].TableId)
{
return i;
}
}
return -1;
}
vtkSESAMEReader::vtkSESAMEReader()
{
this->Internal = new MyInternal();
this->SetNumberOfInputPorts(0);
}
vtkSESAMEReader::~vtkSESAMEReader()
{
this->CloseFile();
delete this->Internal;
}
int vtkSESAMEReader::IsValidFile()
{
if(this->Internal->FileName.empty())
{
return 0;
}
// open the file
FILE* f = fopen(this->GetFileName(), "rb");
if(!f)
{
return 0;
}
// check that it is valid
int a,b,c;
int ret = fscanf(f, TableLineFormat, &a,&b,&c);
fclose(f);
if(ret != 3)
{
return 0;
}
return 1;
}
void vtkSESAMEReader::SetFileName(const char* file)
{
if(this->Internal->FileName == file)
{
return;
}
this->Internal->FileName = file;
// clean out possible data from last file
this->Internal->ClearTables();
this->CloseFile();
this->Modified();
}
const char* vtkSESAMEReader::GetFileName()
{
return this->Internal->FileName.c_str();
}
int vtkSESAMEReader::OpenFile()
{
//already open
if(this->Internal->File)
{
return 1;
}
if(this->Internal->FileName.empty())
{
return 0;
}
// open the file
this->Internal->File = fopen(this->GetFileName(), "rb");
if(!this->Internal->File)
{
vtkErrorMacro(<<"Unable to open file " << this->GetFileName());
return 0;
}
// check that it is valid
int a,b,c;
int ret = fscanf(this->Internal->File, TableLineFormat, &a,&b,&c);
rewind(this->Internal->File);
if(ret != 3)
{
vtkErrorMacro(<<this->GetFileName() << " is not a valid SESAME file");
fclose(this->Internal->File);
this->Internal->File = NULL;
return 0;
}
return 1;
}
void vtkSESAMEReader::CloseFile()
{
if(this->Internal->File)
{
fclose(this->Internal->File);
this->Internal->File = NULL;
}
}
int vtkSESAMEReader::GetNumberOfTableIds()
{
return static_cast<int>(this->Internal->TableIds.size());
}
int* vtkSESAMEReader::GetTableIds()
{
return &this->Internal->TableIds[0];
}
vtkIntArray* vtkSESAMEReader::GetTableIdsAsArray()
{
this->Internal->TableIdsArray->Initialize();
this->Internal->TableIdsArray->SetNumberOfComponents(1);
int numTableIds = static_cast<int>(this->Internal->TableIds.size());
for (int i=0; i < numTableIds; ++i)
{
this->Internal->TableIdsArray->InsertNextValue(
this->Internal->TableIds[i]);
}
return this->Internal->TableIdsArray;
}
void vtkSESAMEReader::SetTable(int tableId)
{
if(this->Internal->TableId != tableId)
{
if(TableIndex(tableId) != -1)
{
this->Internal->TableId = tableId;
// clean out info about the previous table
this->Internal->ClearArrays();
this->Modified();
}
}
}
int vtkSESAMEReader::GetTable()
{
return this->Internal->TableId;
}
int vtkSESAMEReader::GetNumberOfTableArrayNames()
{
return static_cast<int>(this->Internal->TableArrays.size());
}
const char* vtkSESAMEReader::GetTableArrayName(int index)
{
int s = static_cast<int>(this->Internal->TableArrays.size());
if(s > index)
{
return this->Internal->TableArrays[index].c_str();
}
return NULL;
}
void vtkSESAMEReader::SetTableArrayStatus(const char* name, int flag)
{
int i, numArrays;
numArrays = static_cast<int>(this->Internal->TableArrays.size());
for(i=0; i<numArrays; i++)
{
if(this->Internal->TableArrays[i] == name)
{
this->Internal->TableArrayStatus[i] = flag;
this->Modified();
}
}
}
int vtkSESAMEReader::GetTableArrayStatus(const char* name)
{
int i, numArrays;
numArrays = static_cast<int>(this->Internal->TableArrays.size());
for(i=0; i<numArrays; i++)
{
if(this->Internal->TableArrays[i] == name)
{
return this->Internal->TableArrayStatus[i];
}
}
return 0;
}
int vtkSESAMEReader::RequestInformation(vtkInformation *,
vtkInformationVector **,
vtkInformationVector *outputVector)
{
// open the file
if(!this->OpenFile())
{
return 1;
}
if(this->Internal->TableIds.empty())
{
this->Internal->TableLocations.clear();
// get the table ids
char buffer[SESAME_NUM_CHARS];
int dummy;
int internalId;
int tableId;
// read lines from the file the whole file
while( fgets(buffer, SESAME_NUM_CHARS, this->Internal->File) != NULL )
{
// see if the line matches the " 0 9999 602" format
if(sscanf(buffer, TableLineFormat, &dummy, &internalId, &tableId) == 3)
{
if(TableIndex(tableId) != -1)
{
this->Internal->TableIds.push_back(tableId);
long loc = ftell(this->Internal->File);
this->Internal->TableLocations.push_back(loc);
}
}
}
}
//if(this->Internal->TableId == -1 &&
// !this->Internal->TableIds.empty())
// {
// this->Internal->TableId = this->Internal->TableIds[0];
// }
if(this->Internal->TableId != -1)
{
JumpToTable(this->Internal->TableId);
float v[5] = { 0.0, 0.0, 0.0, 0.0, 0.0 };
if ( ReadTableValueLine( &(v[0]), &(v[1]),
&(v[2]), &(v[3]), &(v[4]) ) != 0)
{
// first two values are dimensions of
// grid
outputVector->GetInformationObject(0)->Set(
vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT(),
0, (int)(v[0]) - 1,
0, (int)(v[1]) - 1,
0, 0 );
}
}
if(this->Internal->TableId != -1 &&
this->Internal->TableArrays.empty())
{
// get the names of the arrays in the table
int tableIndex = TableIndex(this->Internal->TableId);
for(int j=0; TableDefs[tableIndex].Arrays[j] != 0; j++)
{
this->Internal->TableArrays.push_back(
TableDefs[tableIndex].Arrays[j]);
this->Internal->TableArrayStatus.push_back(1); // all arrays are on
// by default
}
}
return 0;
}
int vtkSESAMEReader::JumpToTable( int toTable )
{
int numIds = static_cast<int>(this->Internal->TableIds.size());
for(int i=0; i<numIds; i++)
{
if(this->Internal->TableIds[i] == toTable)
{
fseek(this->Internal->File, this->Internal->TableLocations[i], SEEK_SET);
return 1;
}
}
return 0;
}
int vtkSESAMEReader::RequestData(vtkInformation *,
vtkInformationVector **,
vtkInformationVector *outputVector)
{
vtkRectilinearGrid* output = vtkRectilinearGrid::GetData(outputVector);
if (!this->Internal->File)
{
return 0;
}
// read the file
JumpToTable(this->Internal->TableId);
this->ReadTable(output);
return 0;
}
void vtkSESAMEReader::ReadTable(vtkRectilinearGrid* output)
{
vtkFloatArray *xCoords = vtkFloatArray::New();
vtkFloatArray *yCoords = vtkFloatArray::New();
vtkFloatArray *zCoords = vtkFloatArray::New();
float v[5] = { 0.0, 0.0, 0.0, 0.0, 0.0 };
int datadims[2] = { 0, 0 };
int numRead = 0;
int result=0;
result=ReadTableValueLine( &(v[0]), &(v[1]), &(v[2]), &(v[3]), &(v[4]) );
// get the table header
if (result!= 0)
{
// dimensions of grid
datadims[0] = (int)(v[0]);
datadims[1] = (int)(v[1]);
output->SetDimensions( datadims[0], datadims[1], 1 );
// allocate space
xCoords->Allocate( datadims[0] );
yCoords->Allocate( datadims[1] );
zCoords->Allocate( 1 );
zCoords->InsertNextTuple1( 0.0 );
// the first three values are x samples Update: this only works if X has at least 3 values.
//xCoords->InsertNextTuple1( v[2] );
//xCoords->InsertNextTuple1( v[3] );
//xCoords->InsertNextTuple1( v[4] );
//numRead = 3;
}
unsigned int i;
std::vector<vtkFloatArray*> scalars;
for(i=0; i<this->Internal->TableArrayStatus.size(); i++)
{
vtkFloatArray* newArray = this->Internal->TableArrayStatus[i] ?
vtkFloatArray::New() : NULL;
scalars.push_back(newArray);
if(newArray)
{
newArray->Allocate(datadims[0] * datadims[1]);
newArray->SetName(this->Internal->TableArrays[i].c_str());
}
}
unsigned int scalarIndex = 0;
int scalarCount = 0;
int readFromTable = 0;
if (result!= 0)
{
for (int k=2;k<5;k++)
{
if ( numRead < datadims[0] )
{
xCoords->InsertNextTuple1( v[k] );
}
else if ( numRead < (datadims[0] + datadims[1]) )
{
yCoords->InsertNextTuple1( v[k] );
}
else
{
scalarCount++;
if(scalarCount > datadims[0] * datadims[1])
{
scalarCount = 1;
scalarIndex++;
}
if(this->Internal->TableArrayStatus.size() > scalarIndex &&
this->Internal->TableArrayStatus[scalarIndex])
{
scalars[scalarIndex]->InsertNextTuple1(v[k]);
}
}
numRead++;
}
}
while ( (readFromTable = ReadTableValueLine( &(v[0]), &(v[1]), &(v[2]), &(v[3]),
&(v[4]) )) != 0)
{
for (int k=0;k<readFromTable;k++)
{
if ( numRead < datadims[0] )
{
xCoords->InsertNextTuple1( v[k] );
}
else if ( numRead < (datadims[0] + datadims[1]) )
{
yCoords->InsertNextTuple1( v[k] );
}
else
{
scalarCount++;
if(scalarCount > datadims[0] * datadims[1])
{
scalarCount = 1;
scalarIndex++;
}
if(this->Internal->TableArrayStatus.size() > scalarIndex &&
this->Internal->TableArrayStatus[scalarIndex])
{
scalars[scalarIndex]->InsertNextTuple1(v[k]);
}
}
numRead++;
}
}
for(i=scalarIndex+1;
i<this->Internal->TableArrayStatus.size();
i++)
{
// fill in the empty scalars with zeros
int max = datadims[0] * datadims[1];
for(int j=0; j<max; j++)
{
scalars[i]->InsertNextTuple1(0.0);
}
}
output->SetXCoordinates( xCoords );
output->SetYCoordinates( yCoords );
output->SetZCoordinates( zCoords );
output->GetPointData()->Reset();
for(i=0; i<scalars.size(); i++)
{
if(scalars[i])
{
if(scalars[i]->GetNumberOfTuples())
{
output->GetPointData()->AddArray(scalars[i]);
}
scalars[i]->Delete();
}
}
xCoords->Delete();
yCoords->Delete();
zCoords->Delete();