Commit ab10c566 authored by Aaron Bray's avatar Aaron Bray

Namespace Update

parent 80d886af
......@@ -118,11 +118,11 @@
<configuration name="HowTo_EngineUse" type="Application" factoryName="Application" temporary="true" nameIsGenerated="true">
<extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea">
<pattern>
<option name="PATTERN" value="mil.tatrc.physiology.pulse.engine.*" />
<option name="PATTERN" value="com.kitware.physiology.pulse.engine.*" />
<option name="ENABLED" value="true" />
</pattern>
</extension>
<option name="MAIN_CLASS_NAME" value="mil.tatrc.physiology.pulse.engine.HowTo_EngineUse" />
<option name="MAIN_CLASS_NAME" value="com.kitware.physiology.pulse.engine.HowTo_EngineUse" />
<option name="VM_PARAMETERS" value="" />
<option name="PROGRAM_PARAMETERS" value="" />
<option name="WORKING_DIRECTORY" value="file://$PROJECT_DIR$/../../builds/engine/install/bin" />
......
......@@ -3,13 +3,13 @@
# TODO More Test Targets
# Rebasing
# mil.tatrc.physiology.utilities.testing.Rebase [from to (config|ALL)]
# com.kitware.physiology.utilities.testing.Rebase [from to (config|ALL)]
#
# Ploting
# mil.tatrc.physiology.utilities.csv.plots.PlotDriver
# com.kitware.physiology.utilities.csv.plots.PlotDriver
#
# Reconfigure the config file (in memory) so we can test serialization
# mil.tatrc.physiology.utilities.testing.Reconfiguration
# com.kitware.physiology.utilities.testing.Reconfiguration
find_package(Java REQUIRED)
include(UseJava)
......@@ -46,15 +46,15 @@ endif()
if(TYPE STREQUAL "SystemValidation")
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.SETestDriver SystemVerification.config)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.validation.SystemValidation )
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.SETestDriver SystemVerification.config)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.validation.SystemValidation )
elseif(TYPE STREQUAL "PatientValidation")
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.SETestDriver PatientVerification.config)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.validation.PatientValidation)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.SETestDriver PatientVerification.config)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.validation.PatientValidation)
elseif(TYPE STREQUAL "genData")
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.pulse.dataset.DataSetReader)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.pulse.dataset.DataSetReader)
elseif(TYPE STREQUAL "genStates")
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.SETestDriver InitialPatientStates.config)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.SETestDriver InitialPatientStates.config)
elseif(TYPE STREQUAL "doxygen")
file(MAKE_DIRECTORY "./docs/html")
file(MAKE_DIRECTORY "./docs/markdown")
......@@ -66,22 +66,22 @@ elseif(TYPE STREQUAL "doxygen")
file(COPY @CMAKE_SOURCE_DIR@/docs/Doxygen/font-awesome-4.3.0 DESTINATION ./docs/html)
file(COPY @CMAKE_SOURCE_DIR@/docs/Images DESTINATION ./docs/html)
# These are run above
#execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.validation.SystemValidation)
#execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.validation.PatientValidation)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.datamodel.doxygen.DoxygenPreprocessor @CMAKE_SOURCE_DIR@/docs/Markdown ./docs/markdown)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.datamodel.doxygen.DoxygenPreprocessor @CMAKE_SOURCE_DIR@/docs/Methodology ./docs/markdown ./test_results/tables)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.datamodel.doxygen.Proto2Doxygen @CMAKE_SOURCE_DIR@/schema/proto ./docs/markdown)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.datamodel.doxygen.CDM2MD ./docs/markdown)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.utilities.csv.plots.PlotDriver PlotRun.config)
#execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.validation.SystemValidation)
#execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.validation.PatientValidation)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.datamodel.doxygen.DoxygenPreprocessor @CMAKE_SOURCE_DIR@/docs/Markdown ./docs/markdown)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.datamodel.doxygen.DoxygenPreprocessor @CMAKE_SOURCE_DIR@/docs/Methodology ./docs/markdown ./test_results/tables)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.datamodel.doxygen.Proto2Doxygen @CMAKE_SOURCE_DIR@/schema/proto ./docs/markdown)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.datamodel.doxygen.CDM2MD ./docs/markdown)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.utilities.csv.plots.PlotDriver PlotRun.config)
execute_process(COMMAND doxygen ./docs/full.doxy)
elseif(TYPE STREQUAL "protoc")
execute_process(COMMAND ${CMAKE_COMMAND} -DSCHEMA_SRC:STRING=@SCHEMA_SRC@ -DSCHEMA_DST:STRING=@SCHEMA_DST@ -P @CMAKE_SOURCE_DIR@/schema/GenerateCDMBindings.cmake)
elseif(TYPE STREQUAL "updateBaselines")
execute_process(COMMAND ${CMAKE_COMMAND} --build @CMAKE_CURRENT_BINARY_DIR@ --target UpdateVerification)
elseif(TYPE STREQUAL "rebase")
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.Rebase)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.Rebase)
elseif(TYPE STREQUAL "FullReport")
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.SEReportResults)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.SEReportResults)
else()
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" mil.tatrc.physiology.testing.SETestDriver ${TYPE}.config)
execute_process(COMMAND "${Java_JAVA_EXECUTABLE}" -Xmx900m -classpath "${JAVA_CLASSPATH}" com.kitware.physiology.testing.SETestDriver ${TYPE}.config)
endif()
......@@ -2,16 +2,16 @@
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel;
package com.kitware.physiology.datamodel;
import java.io.PrintStream;
import java.lang.reflect.Method;
import java.util.*;
import mil.tatrc.physiology.datamodel.properties.SEFunction;
import mil.tatrc.physiology.utilities.DoubleUtils;
import mil.tatrc.physiology.utilities.Log;
import mil.tatrc.physiology.utilities.StringUtils;
import com.kitware.physiology.datamodel.properties.SEFunction;
import com.kitware.physiology.utilities.DoubleUtils;
import com.kitware.physiology.utilities.Log;
import com.kitware.physiology.utilities.StringUtils;
/**
* @author boday
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.actions;
package com.kitware.physiology.datamodel.actions;
import java.io.Serializable;
import com.kitware.physiology.cdm.Actions.ActionData;
import com.kitware.physiology.cdm.Scenario.AnyActionData;
import mil.tatrc.physiology.datamodel.patient.actions.SEPatientAction;
import mil.tatrc.physiology.datamodel.properties.SEScalarTime;
import mil.tatrc.physiology.datamodel.substance.SESubstanceManager;
import mil.tatrc.physiology.datamodel.system.environment.actions.SEEnvironmentAction;
import mil.tatrc.physiology.datamodel.system.equipment.anesthesia.actions.SEAnesthesiaMachineAction;
import mil.tatrc.physiology.datamodel.system.equipment.inhaler.actions.SEInhalerAction;
import mil.tatrc.physiology.utilities.Log;
import com.kitware.physiology.datamodel.patient.actions.SEPatientAction;
import com.kitware.physiology.datamodel.properties.SEScalarTime;
import com.kitware.physiology.datamodel.substance.SESubstanceManager;
import com.kitware.physiology.datamodel.system.environment.actions.SEEnvironmentAction;
import com.kitware.physiology.datamodel.system.equipment.anesthesia.actions.SEAnesthesiaMachineAction;
import com.kitware.physiology.datamodel.system.equipment.inhaler.actions.SEInhalerAction;
import com.kitware.physiology.utilities.Log;
public abstract class SEAction implements Serializable
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.actions;
package com.kitware.physiology.datamodel.actions;
import com.kitware.physiology.cdm.Actions.AdvanceTimeData;
import mil.tatrc.physiology.datamodel.properties.SEScalarTime;
import com.kitware.physiology.datamodel.properties.SEScalarTime;
public class SEAdvanceTime extends SEAction
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.actions;
package com.kitware.physiology.datamodel.actions;
import com.kitware.physiology.cdm.Actions.SerializeStateData;
import com.kitware.physiology.cdm.ActionEnums.eSerialization;
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.compartment;
package com.kitware.physiology.datamodel.compartment;
import com.kitware.physiology.cdm.Compartment.CompartmentData;
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.compartment;
package com.kitware.physiology.datamodel.compartment;
import java.util.HashMap;
import java.util.Map;
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.compartment;
package com.kitware.physiology.datamodel.compartment;
import com.kitware.physiology.cdm.Compartment.FluidCompartmentData;
import mil.tatrc.physiology.datamodel.properties.SEScalarPressure;
import mil.tatrc.physiology.datamodel.properties.SEScalarVolume;
import mil.tatrc.physiology.datamodel.properties.SEScalarVolumePerTime;
import com.kitware.physiology.datamodel.properties.SEScalarPressure;
import com.kitware.physiology.datamodel.properties.SEScalarVolume;
import com.kitware.physiology.datamodel.properties.SEScalarVolumePerTime;
public abstract class SEFluidCompartment extends SECompartment
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.compartment;
package com.kitware.physiology.datamodel.compartment;
import java.util.ArrayList;
......@@ -10,10 +10,10 @@ import java.util.List;
import com.kitware.physiology.cdm.Compartment.GasCompartmentData;
import com.kitware.physiology.cdm.SubstanceQuantity.GasSubstanceQuantityData;
import mil.tatrc.physiology.datamodel.substance.SESubstance;
import mil.tatrc.physiology.datamodel.substance.SESubstanceManager;
import mil.tatrc.physiology.datamodel.substance.quantity.SEGasSubstanceQuantity;
import mil.tatrc.physiology.datamodel.substance.quantity.SEGasSubstanceQuantity;
import com.kitware.physiology.datamodel.substance.SESubstance;
import com.kitware.physiology.datamodel.substance.SESubstanceManager;
import com.kitware.physiology.datamodel.substance.quantity.SEGasSubstanceQuantity;
import com.kitware.physiology.datamodel.substance.quantity.SEGasSubstanceQuantity;
public class SEGasCompartment extends SEFluidCompartment
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.compartment;
package com.kitware.physiology.datamodel.compartment;
import java.util.ArrayList;
......@@ -10,11 +10,11 @@ import java.util.List;
import com.kitware.physiology.cdm.Compartment.LiquidCompartmentData;
import com.kitware.physiology.cdm.SubstanceQuantity.LiquidSubstanceQuantityData;
import mil.tatrc.physiology.datamodel.properties.SEScalar;
import mil.tatrc.physiology.datamodel.properties.SEScalarTemperature;
import mil.tatrc.physiology.datamodel.substance.SESubstance;
import mil.tatrc.physiology.datamodel.substance.SESubstanceManager;
import mil.tatrc.physiology.datamodel.substance.quantity.SELiquidSubstanceQuantity;
import com.kitware.physiology.datamodel.properties.SEScalar;
import com.kitware.physiology.datamodel.properties.SEScalarTemperature;
import com.kitware.physiology.datamodel.substance.SESubstance;
import com.kitware.physiology.datamodel.substance.SESubstanceManager;
import com.kitware.physiology.datamodel.substance.quantity.SELiquidSubstanceQuantity;
public class SELiquidCompartment extends SEFluidCompartment
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.compartment;
package com.kitware.physiology.datamodel.compartment;
import com.kitware.physiology.cdm.Compartment.ThermalCompartmentData;
import mil.tatrc.physiology.datamodel.properties.SEScalarEnergy;
import mil.tatrc.physiology.datamodel.properties.SEScalarPower;
import mil.tatrc.physiology.datamodel.properties.SEScalarTemperature;
import com.kitware.physiology.datamodel.properties.SEScalarEnergy;
import com.kitware.physiology.datamodel.properties.SEScalarPower;
import com.kitware.physiology.datamodel.properties.SEScalarTemperature;
public class SEThermalCompartment extends SECompartment
{
......
......@@ -3,17 +3,17 @@
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.compartment;
package com.kitware.physiology.datamodel.compartment;
import java.util.*;
import com.kitware.physiology.cdm.Compartment.TissueCompartmentData;
import mil.tatrc.physiology.datamodel.properties.SEScalar;
import mil.tatrc.physiology.datamodel.properties.SEScalar0To1;
import mil.tatrc.physiology.datamodel.properties.SEScalarMass;
import mil.tatrc.physiology.datamodel.properties.SEScalarMassPerMass;
import mil.tatrc.physiology.datamodel.properties.SEScalarVolume;
import com.kitware.physiology.datamodel.properties.SEScalar;
import com.kitware.physiology.datamodel.properties.SEScalar0To1;
import com.kitware.physiology.datamodel.properties.SEScalarMass;
import com.kitware.physiology.datamodel.properties.SEScalarMassPerMass;
import com.kitware.physiology.datamodel.properties.SEScalarVolume;
public class SETissueCompartment extends SECompartment
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.conditions;
package com.kitware.physiology.datamodel.conditions;
import java.io.Serializable;
import java.lang.reflect.Constructor;
......@@ -14,14 +14,14 @@ import com.kitware.physiology.cdm.Conditions.ConditionData;
import com.kitware.physiology.cdm.EnvironmentConditions.AnyEnvironmentConditionData;
import com.kitware.physiology.cdm.Scenario.AnyConditionData;
import mil.tatrc.physiology.datamodel.actions.SEAction;
import mil.tatrc.physiology.datamodel.patient.conditions.SEPatientCondition;
import mil.tatrc.physiology.datamodel.substance.SESubstance;
import mil.tatrc.physiology.datamodel.substance.SESubstanceCompound;
import mil.tatrc.physiology.datamodel.substance.SESubstanceManager;
import mil.tatrc.physiology.datamodel.system.environment.conditions.SEEnvironmentCondition;
import mil.tatrc.physiology.datamodel.system.environment.conditions.SEInitialEnvironmentConditions;
import mil.tatrc.physiology.utilities.Log;
import com.kitware.physiology.datamodel.actions.SEAction;
import com.kitware.physiology.datamodel.patient.conditions.SEPatientCondition;
import com.kitware.physiology.datamodel.substance.SESubstance;
import com.kitware.physiology.datamodel.substance.SESubstanceCompound;
import com.kitware.physiology.datamodel.substance.SESubstanceManager;
import com.kitware.physiology.datamodel.system.environment.conditions.SEEnvironmentCondition;
import com.kitware.physiology.datamodel.system.environment.conditions.SEInitialEnvironmentConditions;
import com.kitware.physiology.utilities.Log;
public abstract class SECondition implements Serializable
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.datarequests;
package com.kitware.physiology.datamodel.datarequests;
import java.io.Serializable;
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.datarequests;
package com.kitware.physiology.datamodel.datarequests;
import java.util.ArrayList;
import java.util.List;
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.doxygen;
package com.kitware.physiology.datamodel.doxygen;
import java.io.*;
import java.util.List;
import mil.tatrc.physiology.utilities.FileUtils;
import mil.tatrc.physiology.utilities.jniBridge;
import mil.tatrc.physiology.utilities.Log;
import com.kitware.physiology.utilities.FileUtils;
import com.kitware.physiology.utilities.jniBridge;
import com.kitware.physiology.utilities.Log;
public class DoxygenPreprocessor
{
......
package mil.tatrc.physiology.datamodel.doxygen;
package com.kitware.physiology.datamodel.doxygen;
import java.io.BufferedReader;
import java.io.File;
......@@ -7,9 +7,9 @@ import java.io.IOException;
import java.io.PrintWriter;
import java.util.*;
import mil.tatrc.physiology.utilities.FileUtils;
import mil.tatrc.physiology.utilities.jniBridge;
import mil.tatrc.physiology.utilities.Log;
import com.kitware.physiology.utilities.FileUtils;
import com.kitware.physiology.utilities.jniBridge;
import com.kitware.physiology.utilities.Log;
public class Proto2Doxygen
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.engine;
package com.kitware.physiology.datamodel.engine;
import com.kitware.physiology.cdm.Engine.AutoSerializationData;
import com.kitware.physiology.cdm.Enums.eSwitch;
import mil.tatrc.physiology.datamodel.properties.SEScalarTime;
import com.kitware.physiology.datamodel.properties.SEScalarTime;
public class SEAutoSerialization
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.engine;
package com.kitware.physiology.datamodel.engine;
import java.util.*;
......@@ -10,9 +10,9 @@ import com.kitware.physiology.cdm.Engine.DynamicStabilizationData;
import com.kitware.physiology.cdm.PatientNutrition.NutritionData;
import com.kitware.physiology.cdm.Enums.eSwitch;
import mil.tatrc.physiology.datamodel.patient.nutrition.SENutrition;
import mil.tatrc.physiology.datamodel.properties.SEScalarTime;
import mil.tatrc.physiology.utilities.FileUtils;
import com.kitware.physiology.datamodel.patient.nutrition.SENutrition;
import com.kitware.physiology.datamodel.properties.SEScalarTime;
import com.kitware.physiology.utilities.FileUtils;
public class SEDynamicStabilization
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.engine;
package com.kitware.physiology.datamodel.engine;
import java.util.*;
import com.kitware.physiology.cdm.Engine.DynamicStabilizationData;
import mil.tatrc.physiology.datamodel.datarequests.SEDataRequest;
import mil.tatrc.physiology.datamodel.properties.SEScalarTime;
import com.kitware.physiology.datamodel.datarequests.SEDataRequest;
import com.kitware.physiology.datamodel.properties.SEScalarTime;
public class SEDynamicStabilizationEngineConvergence
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.engine;
package com.kitware.physiology.datamodel.engine;
public abstract class SEEngineConfiguration
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.engine;
package com.kitware.physiology.datamodel.engine;
import java.util.*;
......@@ -9,8 +9,8 @@ import com.google.protobuf.TextFormat.ParseException;
import com.kitware.physiology.cdm.Engine.TimedStabilizationData;
import com.kitware.physiology.cdm.Enums.eSwitch;
import mil.tatrc.physiology.datamodel.properties.SEScalarTime;
import mil.tatrc.physiology.utilities.FileUtils;
import com.kitware.physiology.datamodel.properties.SEScalarTime;
import com.kitware.physiology.utilities.FileUtils;
public class SETimedStabilization
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.exceptions;
package com.kitware.physiology.datamodel.exceptions;
public class InvalidUnitException extends RuntimeException
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.patient;
package com.kitware.physiology.datamodel.patient;
import java.util.*;
import mil.tatrc.physiology.datamodel.properties.*;
import mil.tatrc.physiology.utilities.FileUtils;
import com.kitware.physiology.datamodel.properties.*;
import com.kitware.physiology.utilities.FileUtils;
import com.google.protobuf.TextFormat;
import com.google.protobuf.TextFormat.ParseException;
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.patient.actions;
package com.kitware.physiology.datamodel.patient.actions;
import com.kitware.physiology.cdm.PatientActions.AcuteStressData;
import mil.tatrc.physiology.datamodel.properties.SEScalar0To1;
import com.kitware.physiology.datamodel.properties.SEScalar0To1;
public class SEAcuteStress extends SEPatientAction
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.patient.actions;
package com.kitware.physiology.datamodel.patient.actions;
import com.kitware.physiology.cdm.PatientActions.AirwayObstructionData;
import mil.tatrc.physiology.datamodel.properties.SEScalar0To1;
import com.kitware.physiology.datamodel.properties.SEScalar0To1;
public class SEAirwayObstruction extends SEPatientAction
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.patient.actions;
package com.kitware.physiology.datamodel.patient.actions;
import com.kitware.physiology.cdm.PatientActions.ApneaData;
import mil.tatrc.physiology.datamodel.properties.SEScalar0To1;
import com.kitware.physiology.datamodel.properties.SEScalar0To1;
public class SEApnea extends SEPatientAction
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.patient.actions;
package com.kitware.physiology.datamodel.patient.actions;
import com.kitware.physiology.cdm.PatientActions.AsthmaAttackData;
import mil.tatrc.physiology.datamodel.properties.SEScalar0To1;
import com.kitware.physiology.datamodel.properties.SEScalar0To1;
public class SEAsthmaAttack extends SEPatientAction
{
......
/* Distributed under the Apache License, Version 2.0.
See accompanying NOTICE file for details.*/
package mil.tatrc.physiology.datamodel.patient.actions;
package com.kitware.physiology.datamodel.patient.actions;
import com.kitware.physiology.cdm.PatientActions.BrainInjuryData;
import com.kitware.physiology.cdm.PatientActionEnums.eBrainInjury.Type;
import mil.tatrc.physiology.datamodel.properties.SEScalar0To1;