GitLab

Updated scenarios with new mechanical ventilator definition.

Optimization of the profiler

Creation API and State Update

See merge request !44

Add higher cmake min requirement

Fix CSV file generation from C#/Python

Scenarios via Java are working
Still need to : Update C# and Python, as well as convert Java engine interface over to their style

Allows systems to override loaded state based on new configuration options

Hemorhagic Shock

See merge request physiology/engine!43

Replace == 0 with IsZero

Tuned pneumothorax a little.

Support other compartments for stablization config
 - Update Renal Stenosis with this
Remove WaterAbsorption from some scenarios
Shorten BasicStandard
Separate flags for nervous feedback with a more formal approach for systems to understand what other systems are doing
Make irreversable states fatal

Merge branch 'feature/hemorhagic_shock' of https://gitlab.kitware.com/physiology/engine into feature/hemorhagic_shock

Update GI to separate water from substances to better control each independently
Update System Validation json readability
Update Validation and Data tables for Glucose/Insulin updates
Add some handy comments to system init/setup methods
Improve Baroreceptor communication between Nervous and CV (not sure I like CV looking at Nervous config params)

Merge branch 'feature/hemorhagic_shock' of gitlab.kitware.com:physiology/engine into feature/hemorhagic_shock

Added serialization support for all new Nervous variables

# Conflicts:
#	cdm/cpp/properties/SEScalar.cpp
#	cdm/cpp/properties/SEScalar.h
#	cdm/cpp/utils/ConfigParser.cpp
#	cdm/cpp/utils/DataTrack.cpp
#	cdm/java/com/kitware/physiology/utilities/csv/CSVContents.java
#	data/Data.xlsx
#	engine/cpp/controller/Controller.cpp
#	engine/cpp/controller/Engine.cpp
#	engine/cpp/controller/Substances.cpp
#	engine/cpp/physiology/BloodChemistry.cpp
#	engine/cpp/physiology/Cardiovascular.cpp
#	engine/cpp/physiology/Cardiovascular.h
#	engine/cpp/physiology/Gastrointestinal.cpp
#	engine/cpp/physiology/Nervous.cpp
#	engine/cpp/physiology/Nervous.h
#	engine/cpp/physiology/Renal.cpp
#	engine/cpp/physiology/Saturation.cpp
#	engine/cpp/physiology/Tissue.cpp
#	engine/cpp/physiology/Tissue.h
#	test/config/DebugRun.config
#	test/config/PatientVerification.config
#	test/config/ScenarioVerification.config
#	test/driver/cpp/main.cpp
#	test/scenarios/patient/BasicStandard.json