Merge branch 'feature/documentation' into '3.x'

Final 3.0 Documentation / Upates

See merge request !47

data/config/DebugPlots.config

@@ -62,5 +62,4 @@ Plotter=com.kitware.pulse.utilities.csv.plots.MultiSourcePlotter
 #VentricularSystolicDysfunction=ActionEventPlotter NoGrid Title=None Header=BloodVolume(L) OutputOverride=./docs/html/plots/Cardiovascular OutputFilename=HeartFailure.jpg
 #RespiratoryValidation=RespiratoryPFTPlotter Header=TotalLungVolume(mL) VerificationDir=validation/systems/ PFTFile=RespiratoryValidationPFT@120.02s.json Title=Pulmonary_Function_Test_Results OutputOverride=./docs/html/plots/Respiratory/
 CardiacShock=MultiPlotter Title=Cardiovascular_Response_To_Hemorrhage PercentOfBaseline X1Label=Percent_Of_Blood_Loss X1=BloodVolume(L) Y1=CardiacOutput(L/min) Y1LowerBound=0 X2=BloodVolume(L) Y2=MeanArterialPressure(mmHg) Y2LowerBound=0 X1LowerBound=0 X1UpperBound=50 DataPathVerificationOverride=scenarios/patient/ Title=None DataFileOverride=HemorrhageClass4NoFluidResults.csv OutputOverride=./docs/html/plots/Cardiovascular OutputFilename=CardiacShock.jpg
-HemorrhageGroups=MultiSourcePlotter Title=Cardiovascular_Hemorrhage_Groups PercentOfBaseline X1=Time(s) Y1=MeanArterialPressure(mmHg) Y1Label=Mean_Arterial_Pressure_Delta Y1LowerBound=0 Y1UpperBound=100 DataPathVerificationOverride=scenarios/patient/ Title=None DataFileOverride=HemorrhageGroup1Results.csv,HemorrhageGroup2Results.csv,HemorrhageGroup3Results.csv,HemorrhageGroup4Results.csv,HemorrhageGroup5Results.csv,HemorrhageGroup6Results.csv OutputOverride=./docs/html/plots/Cardiovascular OutputFilename=HemorrhageGroups.jpg
-HemorrhageClass3NoFluid=ActionEventPlotter LegendOnly ActionsOnly Header=RightAfferentArterioleResistance(mmHg_min/mL) Title=HemorrhageClass4NoFluidLegend VerificationDir=patient OutputOverride=./docs/html/plots/Renal/ NoEvents ImageDimensions=1500,160
+HemorrhageClass4NoFluid=MultiPlotter Title=Cardiovascular_Response_To_Hemorrhage PercentOfBaseline X1Label=Percent_Of_Blood_Loss X1=BloodVolume(L) Y1=CardiacOutput(L/min) Y1LowerBound=0 X2=BloodVolume(L) Y2=MeanArterialPressure(mmHg) Y2LowerBound=0 X1LowerBound=0 X1UpperBound=50 Title=None OutputOverride=./docs/html/plots/Cardiovascular OutputFilename=CardiacShock.jpg

data/config/DebugRun.config

@@ -32,3 +32,4 @@ Macro EngineUnitTestFull=EngineUnitTestDriver FullPlot Baseline=unit_tests/pulse
 Macro ScenarioTest=ScenarioTestDriver FastPlot Baseline=scenarios/ Computed=./test_results/scenarios
 
 patient/BasicStandard.json = ScenarioTest
+

data/config/EngineUnitTests.config

@@ -23,9 +23,11 @@ ReadScenarios = EngineUnitTestDriver NoCompare Computed=./test_results/unit_test
 
 @group Cardiovascular
 CardiovascularCircuitAndTransport = EngineUnitTest Results=CardiovascularCircuitOutput,CardiovascularTransportOutput
+#CardiovascularAndCerebrospinalFluidCircuitAndTransport = EngineUnitTest Results=CardiovascularAndCerebrospinalFluidCircuitOutput,CardiovascularAndCerebrospinalFluidTransportOutput
 CardiovascularAndRenalCircuitAndTransport = EngineUnitTest Results=CardiovascularAndRenalCircuitOutput,CardiovascularAndRenalTransportOutput
 CardiovascularAndTissueCircuitAndTransport = EngineUnitTest Results=CardiovascularAndTissueCircuitOutput,CardiovascularAndTissueTransportOutput
-CardiovascularTissueAndRenalCircuitAndTransport = EngineUnitTest Results=CardiovascularTissueAndRenalCircuitOutput,CardiovascularTissueAndRenalTransportOutput
+FullCardiovascularCircuitAndTransport = EngineUnitTest Results=FullCardiovascularCircuitOutput,FullCardiovascularTransportOutput
+# Turn on CSF in this test when ready
 CardiovascularBloodGases = EngineUnitTest Results=CardiovascularBloodGasesTestCircuitOutput,CardiovascularBloodGasesTestTransportOutput
 TuneCardiovascularCircuit = EngineUnitTest NoCompare
 

data/config/PlotRun.config

@@ -79,13 +79,13 @@ HemorrhageClass2Blood=ActionEventPlotter NoGrid Title=None RemoveLegends Header=
 HemorrhageClass2Blood=ActionEventPlotter NoGrid Title=None RemoveLegends Header=SystolicArterialPressure(mmHg) OutputOverride=./docs/html/plots/Cardiovascular ImageDimensions=1100,700 OutputFilename=Class2Blood_Systolic.jpg
 HemorrhageClass2Blood=ActionEventPlotter NoGrid Title=None RemoveLegends Header=DiastolicArterialPressure(mmHg) OutputOverride=./docs/html/plots/Cardiovascular ImageDimensions=1100,700 OutputFilename=Class2Blood_Diastolic.jpg
 HemorrhageClass2Blood=ActionEventPlotter Header=BloodVolume(L) OutputOverride=./docs/html/plots/Cardiovascular LegendOnly NoEvents ImageDimensions=2000,150 OutputFilename=Class2Blood_Legend.jpg
-HemorrhageClass4NoFluid=ActionEventPlotter NoGrid Title=None RemoveLegends Header=BloodVolume(L) OutputOverride=./docs/html/plots/Cardiovascular ImageDimensions=1100,700 OutputFilename=Class4NoFluid_BloodVolume.jpg
-HemorrhageClass4NoFluid=ActionEventPlotter NoGrid Title=None RemoveLegends Header=HemoglobinContent(g) OutputOverride=./docs/html/plots/Cardiovascular ImageDimensions=1100,700 OutputFilename=Class4NoFluid_Hb.jpg
-HemorrhageClass4NoFluid=ActionEventPlotter Header=BloodVolume(L) OutputOverride=./docs/html/plots/Cardiovascular LegendOnly NoEvents ImageDimensions=2000,150 OutputFilename=Class4NoFluid_Legend.jpg
 HemorrhageClass2Saline=ActionEventPlotter NoGrid Title=None RemoveLegends Header=BloodVolume(L) OutputOverride=./docs/html/plots/Cardiovascular ImageDimensions=1100,700 OutputFilename=Class2Saline_BloodVolume.jpg
 HemorrhageClass2Saline=ActionEventPlotter NoGrid Title=None RemoveLegends Header=HemoglobinContent(g) OutputOverride=./docs/html/plots/Cardiovascular ImageDimensions=1100,700 OutputFilename=Class2Saline_Hb.jpg
 HemorrhageClass2Saline=ActionEventPlotter Header=BloodVolume(L) OutputOverride=./docs/html/plots/Cardiovascular LegendOnly NoEvents ImageDimensions=2000,150 OutputFilename=Class2Saline_Legend.jpg
-CardiacShock=MultiPlotter Title=Cardiovascular_Response_To_Hemorrhage PercentOfBaseline X1Label=Percent_Of_Blood_Loss X1=BloodVolume(L) Y1=CardiacOutput(L/min) Y1LowerBound=0 X2=BloodVolume(L) Y2=MeanArterialPressure(mmHg) Y2LowerBound=0 X1LowerBound=0 X1UpperBound=50 DataPathVerificationOverride=scenarios/patient/ Title=None DataFileOverride=HemorrhageClass4NoFluidResults.csv OutputOverride=./docs/html/plots/Cardiovascular OutputFilename=CardiacShock.jpg
+HemorrhageToShock=ActionEventPlotter NoGrid Title=None RemoveLegends Header=BloodVolume(L) OutputOverride=./docs/html/plots/Cardiovascular ImageDimensions=1100,700 OutputFilename=Class4NoFluid_BloodVolume.jpg
+HemorrhageToShock=ActionEventPlotter NoGrid Title=None RemoveLegends Header=HemoglobinContent(g) OutputOverride=./docs/html/plots/Cardiovascular ImageDimensions=1100,700 OutputFilename=Class4NoFluid_Hb.jpg
+HemorrhageToShock=ActionEventPlotter Header=BloodVolume(L) OutputOverride=./docs/html/plots/Cardiovascular LegendOnly NoEvents ImageDimensions=2000,150 OutputFilename=Class4NoFluid_Legend.jpg
+HemorrhageClass4NoFluid=MultiPlotter Title=Cardiovascular_Response_To_Hemorrhage PercentOfBaseline X1Label=Percent_Of_Blood_Loss X1=BloodVolume(L) Y1=CardiacOutput(L/min) Y1LowerBound=0 X2=BloodVolume(L) Y2=MeanArterialPressure(mmHg) Y2LowerBound=0 X1LowerBound=0 X1UpperBound=50 Title=None OutputOverride=./docs/html/plots/Cardiovascular OutputFilename=CardiacShock.jpg
 HemorrhageGroups=MultiSourcePlotter Title=Cardiovascular_Hemorrhage_Groups PercentOfBaseline X1=Time(s) Y1=MeanArterialPressure(mmHg) Y1Label=Mean_Arterial_Pressure_Delta Y1LowerBound=0 Y1UpperBound=100 DataPathVerificationOverride=scenarios/patient/ Title=None DataFileOverride=HemorrhageGroup1Results.csv,HemorrhageGroup2Results.csv,HemorrhageGroup3Results.csv,HemorrhageGroup4Results.csv,HemorrhageGroup5Results.csv,HemorrhageGroup6Results.csv OutputOverride=./docs/html/plots/Cardiovascular OutputFilename=HemorrhageGroups.jpg
 #CardiovascularValidation=MultiPlotter Y1=RightHeart-Volume(mL),LeftHeart-Volume(mL),VenaCava-Volume(mL),PulmonaryArteries-Volume(mL),PulmonaryCapillaries-Volume(mL),PulmonaryVeins-Volume(mL),RightArmVasculature-Volume(mL),RightLegVasculature-Volume(mL),LeftArmVasculature-Volume(mL),LeftLegVasculature-Volume(mL),BrainVasculature-Volume(mL),LiverVasculature-Volume(mL),KidneyVasculature-Volume(mL),Aorta-Volume(mL),MyocardiumVasculature-Volume(mL),SplanchnicVasculature-Volume(mL),SkinVasculature-Volume(mL),FatVasculature-Volume(mL) X1=Time(s) VerificationDir=validation/systems/ Title=Blood_Compartment_Volumes Y1Label=BloodVolume(mL) OutputOverride=./docs/html/plots/Cardiovascular 
 #heart faliure
@@ -143,24 +143,20 @@ FireFighter=ActionEventPlotter Header=RightAlveoli-ForestFireParticulate-MassDep
 FireFighter=ActionEventPlotter Header=RightAnatomicDeadSpace-ForestFireParticulate-MassDeposited(ug) VerificationDir=energyenvironment Title=DeadSpaceMassDeposited(ug)  Y1Label=MassDeposited(ug) OutputOverride=./docs/html/plots/Environment RemoveLegends NoActions NoEvents
 
 ##### GI Methodology Report  #####
-12hrFast=ActionEventPlotter Header=BloodVolume(L) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_BV.jpg
-12hrFast=ActionEventPlotter Header=Calcium-BloodConcentration(mg/L) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_BloodCalcium.jpg
-12hrFast=ActionEventPlotter Header=Glucose-BloodConcentration(mg/dL) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_BloodGlucose.jpg
-12hrFast=ActionEventPlotter Header=SmallIntestineChyme-Calcium-Mass(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_IntestineCalcium.jpg
-12hrFast=ActionEventPlotter Header=SmallIntestineChyme-Glucose-Mass(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_IntestineGlucose.jpg
-12hrFast=ActionEventPlotter Header=SmallIntestineChyme-Sodium-Mass(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_IntestineSodium.jpg
-12hrFast=ActionEventPlotter Header=SmallIntestineChyme-Tristearin-Mass(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_IntestineTristearin.jpg
-12hrFast=ActionEventPlotter Header=SmallIntestineChyme-Urea-Mass(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_IntestineUrea.jpg
-12hrFast=ActionEventPlotter Header=SmallIntestineChyme-Volume(mL) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_IntestineVolume.jpg
-12hrFast=ActionEventPlotter Header=Sodium-BloodConcentration(g/dL) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_BloodSodium.jpg
-12hrFast=ActionEventPlotter Header=StomachContents-Calcium(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_StomachCalcium.jpg
-12hrFast=ActionEventPlotter Header=StomachContents-Carbohydrate(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_StomachCarbs.jpg
-12hrFast=ActionEventPlotter Header=StomachContents-Fat(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_StomachFat.jpg
-12hrFast=ActionEventPlotter Header=StomachContents-Protein(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_StomachProtein.jpg
-12hrFast=ActionEventPlotter Header=StomachContents-Sodium(g) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_StomachSodium.jpg
-12hrFast=ActionEventPlotter Header=StomachContents-Water(mL) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_StomachWater.jpg
-12hrFast=ActionEventPlotter Header=Tristearin-BloodConcentration(mg/dL) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_BloodTristearin.jpg
-12hrFast=ActionEventPlotter Header=Urea-BloodConcentration(mg/dL) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=12hr_BloodUrea.jpg
+Nutrition=ActionEventPlotter Header=BloodVolume(L) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_BV.jpg
+Nutrition=ActionEventPlotter Header=Calcium-BloodConcentration(mg/L) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_BloodCalcium.jpg
+Nutrition=ActionEventPlotter Header=Glucose-BloodConcentration(mg/dL) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_BloodGlucose.jpg
+Nutrition=ActionEventPlotter Header=Insulin-BloodConcentration(ug/L) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_BloodInsulin.jpg
+Nutrition=ActionEventPlotter Header=SmallIntestineChyme-Volume(mL) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_IntestineVolume.jpg
+Nutrition=ActionEventPlotter Header=Sodium-BloodConcentration(g/dL) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_BloodSodium.jpg
+Nutrition=ActionEventPlotter Header=Tristearin-BloodConcentration(mg/dL) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_BloodTristearin.jpg
+Nutrition=ActionEventPlotter Header=Urea-BloodConcentration(mg/dL) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_BloodUrea.jpg
+Nutrition=ActionEventPlotter Header=StomachContents-Calcium(g) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_StomachCalcium.jpg
+Nutrition=ActionEventPlotter Header=StomachContents-Carbohydrate(g) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_StomachCarbs.jpg
+Nutrition=ActionEventPlotter Header=StomachContents-Fat(g) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_StomachFat.jpg
+Nutrition=ActionEventPlotter Header=StomachContents-Protein(g) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_StomachProtein.jpg
+Nutrition=ActionEventPlotter Header=StomachContents-Sodium(g) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_StomachSodium.jpg
+Nutrition=ActionEventPlotter Header=StomachContents-Water(mL) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/GI OutputFilename=4hr_StomachWater.jpg
 
 ##### Nervous Methodology Report  #####
 BaroreceptorMethodology=MultiPlotter X1=normMAP Y1=SympatheticResponse,ParasympatheticResponse VerificationDir=patient Title=Response_Fractions X1Label=MeanArterialPressure(Normalized) Y1Label=Response(Fraction) OutputOverride=./docs/html/plots/Nervous X1LowerBound=0.0 X1UpperBound=2.5 NoGrid ImageDimensions=800,600 DataPathValidationOverride=Waveforms/
@@ -196,7 +192,7 @@ HighAltitudeEnvironmentChange=ActionEventPlotter NoGrid NoActions Title=None Hea
 HighAltitudeEnvironmentChange=ActionEventPlotter NoGrid NoActions Title=None Header=RenalBloodFlow(L/min) VerificationDir=energyenvironment RemoveLegends FontSize=17 OutputOverride=./docs/html/plots/Renal/ ImageDimensions=800,400 OutputFilename=AltitudeRBF.jpg
 HighAltitudeEnvironmentChange=ActionEventPlotter NoGrid NoActions Title=None Header=RightAfferentArterioleResistance(mmHg_min/mL) VerificationDir=energyenvironment FontSize=17 RemoveLegends OutputOverride=./docs/html/plots/Renal/ ImageDimensions=800,400 OutputFilename=AltitudeArterioleResistance.jpg
 HighAltitudeEnvironmentChange=ActionEventPlotter LegendOnly ActionsOnly Header=RightAfferentArterioleResistance(mmHg_min/mL) Title=HighAltitudeEnvironmentChangeLegend VerificationDir=energyenvironment OutputOverride=./docs/html/plots/Renal/ NoEvents ImageDimensions=480,300 
-12hrFast=ActionEventPlotter Header=Bladder-Volume(mL) VerificationDir=miscellaneous RemoveLegends OutputOverride=./docs/html/plots/Renal OutputFilename=12hr_Urination.jpg
+Nutrition=ActionEventPlotter Header=Bladder-Volume(mL) VerificationDir=nutrition RemoveLegends OutputOverride=./docs/html/plots/Renal OutputFilename=4hr_Urination.jpg
 RenalTGFFeedbackOutput=MultiPlotter Y1=GlomerularFiltrationRate(L/min) FontSize=34 X1=MeanArterialPressure(mmHg) Title=None ValidationData=Renal/MAP_vs_GFR.csv DataPathVerificationOverride=unit_tests/pulse/  X2=MeanArterialPressure(mmHg) OutputOverride=./docs/html/plots/Renal/ Y2=GlomerularFiltrationRate(L/min) X1LowerBound=60 X1UpperBound=200 Y1LowerBound=.09 Y2LowerBound=.09 Y1UpperBound=.16 Y2UpperBound=.16 OutputOverride=./docs/html/plots/Renal/ NoGrid RemoveLegends DataFileOverride=RenalTGFFeedbackOutput.csv OutputFilename=MAP_vs_GFR.jpg
 RenalTGFFeedbackOutput=MultiPlotter Y1=RenalBloodFlow(L/min) X1=MeanArterialPressure(mmHg) Title=None FontSize=34 ValidationData=Renal/MAP_vs_RBF.csv DataPathVerificationOverride=unit_tests/pulse/ X2=MeanArterialPressure(mmHg) Y2=RenalBloodFlow(L/min) X1LowerBound=60 X1UpperBound=200 Y1LowerBound=1 Y2LowerBound=1 Y1UpperBound=1.7 Y2UpperBound=1.7 OutputOverride=./docs/html/plots/Renal/ NoGrid RemoveLegends OutputOverride=./docs/html/plots/Renal/ DataFileOverride=RenalTGFFeedbackOutput.csv OutputFilename=MAP_vs_RBF.jpg
 RenalTGFandUPRFeedbackOutput=MultiPlotter Y1=UrineProductionRate(mL/min) X1=MeanArterialPressure(mmHg) Title=None FontSize=34 ValidationData=Renal/MAP_vs_UPR.csv DataPathVerificationOverride=unit_tests/pulse/  NoGrid X2=MeanArterialPressure(mmHg) Y2=UrineProductionRate(mL/min) X1LowerBound=60 X1UpperBound=200 Y1LowerBound=0 Y2LowerBound=0 Y1UpperBound=8 Y2UpperBound=8 OutputOverride=./docs/html/plots/Renal/ RemoveLegends OutputOverride=./docs/html/plots/Renal/ DataFileOverride=RenalTGFandUPRFeedbackOutput.csv OutputFilename=MAP_vs_UPR.jpg
@@ -355,6 +351,12 @@ MechanicalVentilatorPressureControlledVaried=ActionEventPlotter NoGrid Header=Ti
 MechanicalVentilatorPressureControlledVaried=ActionEventPlotter NoGrid Header=InspiratoryExpiratoryRatio VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents RemoveLegends OutputFilename=MechanicalVentilatorPressureControlledVaried_InspiratoryExpiratoryRatio.jpg
 MechanicalVentilatorPressureControlledVaried=ActionEventPlotter Header=TidalVolume(mL) VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents LegendOnly Title=MechanicalVentilatorPressureControlledVariedLegend ImageDimensions=1800,820
 
+MechanicalVentilatorVolumeControlledARDS=ActionEventPlotter NoGrid Header=TotalLungVolume(L) VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents RemoveLegends OutputFilename=MechanicalVentilatorVolumeControlledARDS_TotalLungVolume.jpg
+MechanicalVentilatorVolumeControlledARDS=ActionEventPlotter NoGrid Header=RespirationRate(1/min) VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents RemoveLegends OutputFilename=MechanicalVentilatorVolumeControlledARDS_RR.jpg
+MechanicalVentilatorVolumeControlledARDS=ActionEventPlotter NoGrid Header=TidalVolume(mL) VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents RemoveLegends OutputFilename=MechanicalVentilatorVolumeControlledARDS_TidalVolume.jpg
+MechanicalVentilatorVolumeControlledARDS=ActionEventPlotter NoGrid Header=InspiratoryExpiratoryRatio VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents RemoveLegends OutputFilename=MechanicalVentilatorVolumeControlledARDS_InspiratoryExpiratoryRatio.jpg
+MechanicalVentilatorVolumeControlledARDS=ActionEventPlotter Header=TidalVolume(mL) VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents LegendOnly Title=MechanicalVentilatorVolumeControlledARDSLegend ImageDimensions=1800,820
+
 MechanicalVentilatorPressureControlledARDS=ActionEventPlotter NoGrid Header=TidalVolume(mL) VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents RemoveLegends OutputFilename=MechanicalVentilatorPressureControlledARDS_TidalVolume.jpg
 MechanicalVentilatorPressureControlledARDS=ActionEventPlotter NoGrid Header=OxygenSaturation VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents RemoveLegends OutputFilename=MechanicalVentilatorPressureControlledARDS_OxygenSaturation.jpg
 MechanicalVentilatorPressureControlledARDS=ActionEventPlotter NoGrid Header=CarricoIndex(mmHg) VerificationDir=equipment OutputOverride=./docs/html/plots/MechanicalVentilator/ NoEvents RemoveLegends OutputFilename=MechanicalVentilatorPressureControlledARDS_CarricoIndex.jpg

data/config/ScenarioVerification.config

@@ -38,7 +38,7 @@ patient/ARDSModerateBothLungs.json = ScenarioTest
 patient/AsthmaAttackModerateAcute.json = ScenarioTest
 patient/AsthmaAttackSevereAcute.json = ScenarioTest
 patient/AsthmaAttackLifeThreateningAcute.json = ScenarioTest
-patient/Anemia30.json = ScenarioTest
+*patient/Anemia30.json = ScenarioTest
 patient/Baroreceptors.json = ScenarioTest
 patient/BrainInjury.json = ScenarioTest
 patient/BronchoConstrictionVaried.json = ScenarioTest
@@ -52,17 +52,14 @@ patient/CPRForce.json = ScenarioTest
 patient/DyspneaVaried.json = ScenarioTest
 patient/EffusionCondition.json = ScenarioTest
 patient/EffusionConditionPlus.json = ScenarioTest
-patient/HemorrhageClass1NoFluid.json = ScenarioTest
 patient/HemorrhageClass2Blood.json = ScenarioTest
 patient/HemorrhageClass2BrachialArtery.json = ScenarioTest
-patient/HemorrhageClass2FemoralArtery.json = ScenarioTest
 patient/HemorrhageClass2InternalMultiple.json = ScenarioTest
 patient/HemorrhageClass2InternalSpleen.json = ScenarioTest
 patient/HemorrhageClass2NoFluid.json = ScenarioTest
 patient/HemorrhageClass2Saline.json = ScenarioTest
 patient/HemorrhageClass3NoFluid.json = ScenarioTest
 patient/HemorrhageClass3PackedRBC.json = ScenarioTest
-patient/HemorrhageClass4NoFluid.json = ScenarioTest
 patient/HemorrhageGroup1.json = ScenarioTest
 patient/HemorrhageGroup2.json = ScenarioTest
 patient/HemorrhageGroup3.json = ScenarioTest
@@ -84,6 +81,13 @@ patient/TensionPneumothoraxBilateral.json = ScenarioTest
 patient/TensionPneumothoraxClosedVaried.json = ScenarioTest
 patient/TensionPneumothoraxOpenVaried.json = ScenarioTest
 *patient/VentricularSystolicDysfunction.json = ScenarioTest
+patient/ZeroAnemia.json = ScenarioTest
+patient/ZeroARDS.json = ScenarioTest
+patient/ZeroCOPD.json = ScenarioTest
+patient/ZeroLobarPneumonia.json = ScenarioTest
+patient/ZeroPericardialEffusion.json = ScenarioTest
+patient/ZeroPulmonaryFibrosis.json = ScenarioTest
+patient/ZeroRenalStenosis.json = ScenarioTest
 
 @group EnergyEnvironment
 energyenvironment/AlveolarArterialGradientEnvironments.json = ScenarioTest
@@ -125,6 +129,7 @@ equipment/MainstemIntubation.json = ScenarioTest
 equipment/MechanicalVentilation.json = ScenarioTest
 equipment/MechanicalVentilatorPressureControlledARDS.json = ScenarioTest
 equipment/MechanicalVentilatorPressureControlledVaried.json = ScenarioTest
+equipment/MechanicalVentilatorVolumeControlledARDS.json = ScenarioTest
 equipment/NasalCannula.json = ScenarioTest
 equipment/NonRebreatherMask.json = ScenarioTest
 equipment/SimpleMask.json = ScenarioTest
@@ -182,6 +187,8 @@ miscellaneous/SpirometryComparison.json = ScenarioTest
 miscellaneous/SpirometryHealthy.json = ScenarioTest
 miscellaneous/SpirometryPulmonaryFibrosis.json = ScenarioTest
 miscellaneous/TBIandDrugs.json = ScenarioTest
+miscellaneous/ZeroImpairedAlveolarExchange.json = ScenarioTest
+miscellaneous/ZeroPulmonaryShunt.json = ScenarioTest
 
 
 @group Compartments
@@ -193,4 +200,4 @@ compartments/PulmonaryCompartments.json = ScenarioTest
 compartments/TemperatureCompartments.json = ScenarioTest
 compartments/TissueCompartments.json = ScenarioTest
 compartments/UrineCompartments.json = ScenarioTest
-compartments/VascularCompartments.json = ScenarioTest
\ No newline at end of file
+compartments/VascularCompartments.json = ScenarioTest

data/human/adult/baselines/scenarios/energyenvironment/CarbonMonoxideExtreme.zip.sha512

-6f64c118612fc77df71abc55c60d21d9de4fa4494a16312bbaa9f28d5fc6f20064618c571999e684fdc7dd7c4915c45b96edd4ce2a59d79cb177141f8f3a2f17
\ No newline at end of file
+bf06b4953ed2d593d8868ba5cf82684995fb8b5a0b7e6ddcc2f446b69a9d724fee6189fabab739f61065fe0a6f8f9dd8c4023930d465183f299c4b7f12b29beb
\ No newline at end of file

data/human/adult/baselines/scenarios/energyenvironment/FireFighter.zip.sha512

-0118dc9e95faaa371b9d0448832373df9324881fdd5b5634250477fa9558a3db27fa2a62a8390d324e75395b5281fea942d30eb61eab0855a56e3fa3d39c492a
\ No newline at end of file
+a2c38486ec8faac3ed4f3fc9107fab61a48dae690acd3e94a3bdb0e6d9e4017a3121fc40024a40f442a3a0bf6a43a5ef8cffba9bca1a389dddc4d792ac1f5baa
\ No newline at end of file

data/human/adult/baselines/scenarios/energyenvironment/InitialHighAltitudeEnvironmentFile.zip.sha512

-f8808487b72fca4dd9ef5e10690b1fb97a773c1adda129658ec8e157a18e60b5bbe96b57fa7d3b1f106e9e2699faea7b1284a291373cad6db676c2b16584ecd3
\ No newline at end of file
+677bc7e34065be9d4c50e91bce874478852bb137c787ff5fd78407b735bf8785b29062f6be14a2fb18f221cf75924d6098162749bcfa90ce4f73fae9885b26a6
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