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Commit 6ba4ab2e authored by Rachel Clipp's avatar Rachel Clipp
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Cleaned up the internal hemorrhage functionality and removed the internal... 

Cleaned up the internal hemorrhage functionality and removed the internal hemorrhage lists. These do not need to be book kept (bookkeeped?) seperately. Added an internal severity hemorrhage scenario.
parent fd2668a7
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data/human/adult/scenarios/patient/HemorrhageClass2InternalSeverity.json 0 → 100644
View file @ 6ba4ab2e
{
"Name": "HemorrhageClass2InternalSpleen",
"Description": "25% Blood loss from spleen",
"PatientConfiguration": { "PatientFile": "StandardMale.json" },
"DataRequestManager":
{
"DataRequest":
[
{ "DecimalFormat": { "Precision": 1 }, "PropertyName": "Weight", "Unit": "kg" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "HeartRate", "Unit": "1/min" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "Physiology", "PropertyName": "HeartStrokeVolume", "Unit": "mL" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "BloodVolume", "Unit": "L" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "Physiology", "PropertyName": "ExtravascularFluidVolume", "Unit": "L" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "Physiology", "PropertyName": "ArterialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "Physiology", "PropertyName": "MeanArterialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { }, "Category": "Physiology", "PropertyName": "SystolicArterialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "Physiology", "PropertyName": "DiastolicArterialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "CardiacOutput", "Unit": "L/min" },
{ "DecimalFormat": { }, "Category": "Physiology", "PropertyName": "HemoglobinContent", "Unit": "g" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "CentralVenousPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "PulmonaryCapillariesWedgePressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 3 }, "Category": "Physiology", "PropertyName": "TidalVolume", "Unit": "mL" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "TotalLungVolume", "Unit": "L" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "RespirationRate", "Unit": "1/min" },
{ "DecimalFormat": { "Precision": 3 }, "Category": "Physiology", "PropertyName": "OxygenSaturation", "Unit": "unitless" },
{ "DecimalFormat": { "Precision": 3 }, "Category": "Physiology", "PropertyName": "CarbonDioxideSaturation", "Unit": "unitless" },
{ "DecimalFormat": { "Precision": 4 }, "Category": "Physiology", "PropertyName": "EndTidalCarbonDioxideFraction", "Unit": "unitless" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "TotalAlveolarVentilation", "Unit": "L/min" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "TranspulmonaryPressure", "Unit": "cmH2O" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "Physiology", "PropertyName": "CoreTemperature", "Unit": "degC" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "Physiology", "PropertyName": "SkinTemperature", "Unit": "degC" },
{ "DecimalFormat": { "Precision": 3 }, "Category": "Physiology", "PropertyName": "RespiratoryExchangeRatio", "Unit": "unitless" },
{ "DecimalFormat": { }, "Category": "Physiology", "PropertyName": "OxygenConsumptionRate", "Unit": "mL/min" },
{ "DecimalFormat": { }, "Category": "Physiology", "PropertyName": "CarbonDioxideProductionRate", "Unit": "mL/min" },
{ "DecimalFormat": { }, "Category": "Physiology", "PropertyName": "GlomerularFiltrationRate", "Unit": "mL/min" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Physiology", "PropertyName": "RenalBloodFlow", "Unit": "L/min" },
{ "DecimalFormat": { "Precision": 3 }, "Category": "Physiology", "PropertyName": "UrineProductionRate", "Unit": "mL/min" },
{ "DecimalFormat": { "Precision": 4 }, "Category": "Physiology", "PropertyName": "LeftAfferentArterioleResistance", "Unit": "mmHg min/mL" },
{ "DecimalFormat": { "Precision": 4 }, "Category": "Physiology", "PropertyName": "RightAfferentArterioleResistance", "Unit": "mmHg min/mL" },
{ "DecimalFormat": { }, "Category": "GasCompartment", "CompartmentName": "LeftAlveoli", "PropertyName": "Pressure", "Unit": "cmH2O" },
{ "DecimalFormat": { }, "Category": "GasCompartment", "CompartmentName": "RightAlveoli", "PropertyName": "Pressure", "Unit": "cmH2O" },
{ "DecimalFormat": { }, "Category": "GasCompartment", "CompartmentName": "LeftAlveoli", "SubstanceName": "Oxygen", "PropertyName": "PartialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "GasCompartment", "CompartmentName": "LeftAlveoli", "SubstanceName": "CarbonDioxide", "PropertyName": "PartialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { }, "Category": "GasCompartment", "CompartmentName": "RightAlveoli", "SubstanceName": "Oxygen", "PropertyName": "PartialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "GasCompartment", "CompartmentName": "RightAlveoli", "SubstanceName": "CarbonDioxide", "PropertyName": "PartialPressure", "Unit": "mmHg"},
{ "DecimalFormat": { }, "Category": "GasCompartment", "CompartmentName": "Carina", "SubstanceName": "Oxygen", "PropertyName": "PartialPressure", "Unit": "cmH2O" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "GasCompartment", "CompartmentName": "Carina", "SubstanceName": "CarbonDioxide", "PropertyName": "PartialPressure", "Unit": "cmH2O" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "LiquidCompartment", "CompartmentName": "Aorta", "SubstanceName": "Oxygen", "PropertyName": "PartialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "LiquidCompartment", "CompartmentName": "Aorta", "SubstanceName": "CarbonDioxide", "PropertyName": "PartialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "LiquidCompartment", "CompartmentName": "VenaCava", "SubstanceName": "Oxygen", "PropertyName": "PartialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 1 }, "Category": "LiquidCompartment", "CompartmentName": "VenaCava", "SubstanceName": "CarbonDioxide", "PropertyName": "PartialPressure", "Unit": "mmHg" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "LiquidCompartment", "CompartmentName": "RightTubules", "SubstanceName": "Sodium", "PropertyName": "Concentration", "Unit": "g/L" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "LiquidCompartment", "CompartmentName": "LeftTubules", "SubstanceName": "Sodium", "PropertyName": "Concentration", "Unit": "g/L" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Substance", "SubstanceName": "Oxygen", "PropertyName": "AlveolarTransfer", "Unit": "mL/s" },
{ "DecimalFormat": { "Precision": 2 }, "Category": "Substance", "SubstanceName": "CarbonDioxide", "PropertyName": "AlveolarTransfer", "Unit": "mL/s" },
{ "DecimalFormat": { "Precision": 6 }, "Category": "Substance", "SubstanceName": "Epinephrine", "PropertyName": "BloodConcentration", "Unit": "ug/L" },
{ "DecimalFormat": { "Precision": 8 }, "Category": "Substance", "SubstanceName": "Epinephrine", "PropertyName": "SystemicMassCleared", "Unit": "ug" },
{ "DecimalFormat": { "Precision": 3 }, "Category": "Physiology", "PropertyName": "SystemicVascularResistance", "Unit": "mmHg s/mL"}
]
},
"AnyAction": [{
"AdvanceTime": {
"Time": {
"ScalarTime": {
"Value": 30.0,
"Unit": "s"
}
}
}
}, {
"PatientAction": {
"Hemorrhage": {
"Compartment": "SpleenVasculature",
"Severity": {
"Scalar0To1": {
"Value": 0.5
}
},
"Type": "Internal"
}
}
}, {
"AdvanceTime": {
"Time": {
"ScalarTime": {
"Value": 1230.0,
"Unit": "s"
}
}
}
}, {
"PatientAction": {
"Hemorrhage": {
"Compartment": "SpleenVasculature",
"Severity": {
"Scalar0To1": {
"Value": 0.0
}
},
"Type": "Internal"
}
}
}, {
"AdvanceTime": {
"Time": {
"ScalarTime": {
"Value": 400.0,
"Unit": "s"
}
}
}
}]
}
src/cpp/cpm/io/protobuf/PBPulsePhysiology.cpp
View file @ 6ba4ab2e
......@@ -122,23 +122,6 @@ void PBPulsePhysiology::Serialize(const PULSE_BIND::CardiovascularData& src, Car
}
if (!dst.m_HemorrhagePaths.empty())
dst.m_data.GetCircuits().GetCardiovascularCircuit().StateChange();
// Only associating references here, as these are a subset of the hemorrhage links/paths we just processed
for (auto name : src.internalhemorrhagelinks())
{
SELiquidCompartmentLink* hLink = dst.m_data.GetCompartments().GetCardiovascularGraph().GetLink(name);
if (hLink == nullptr)
dst.Fatal("Unable to find Internal Hemorrhage Link " + name);
else
dst.m_InternalHemorrhageLinks.push_back(hLink);
}
for (auto name : src.internalhemorrhagepaths())
{
SEFluidCircuitPath* hPath = dst.m_data.GetCircuits().GetCardiovascularCircuit().GetPath(name);
if (hPath == nullptr)
dst.Fatal("Unable to find Internal Hemorrhage path " + name);
else
dst.m_InternalHemorrhagePaths.push_back(hPath);
}
}
PULSE_BIND::CardiovascularData* PBPulsePhysiology::Unload(const Cardiovascular& src)
{
......@@ -189,10 +172,6 @@ void PBPulsePhysiology::Serialize(const Cardiovascular& src, PULSE_BIND::Cardiov
for (auto* p : src.m_HemorrhagePaths)
dst.add_hemorrhagepaths(p->GetName());
for (auto* l : src.m_InternalHemorrhageLinks)
dst.add_internalhemorrhagelinks(l->GetName());
for (auto* p : src.m_InternalHemorrhagePaths)
dst.add_internalhemorrhagepaths(p->GetName());
}
void PBPulsePhysiology::Load(const PULSE_BIND::DrugData& src, Drugs& dst)
......
src/cpp/cpm/physiology/Cardiovascular.cpp
View file @ 6ba4ab2e
This diff is collapsed.
src/cpp/cpm/physiology/Cardiovascular.h
View file @ 6ba4ab2e
......@@ -108,9 +108,7 @@ protected:
double m_CompressionPeriod_s;
//Hemorrhage
std::vector<SEFluidCircuitPath*> m_HemorrhagePaths;
std::vector<SEFluidCircuitPath*> m_InternalHemorrhagePaths;
std::vector<SELiquidCompartmentLink*> m_HemorrhageLinks;
std::vector<SELiquidCompartmentLink*> m_InternalHemorrhageLinks;
// Vitals and Averages
double m_CurrentCardiacCycleTime_s;
double m_CardiacCycleDiastolicVolume_mL; // Maximum left heart volume for the current cardiac cycle
......
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