/* Distributed under the Apache License, Version 2.0.
   See accompanying NOTICE file for details.*/

#include "stdafx.h"
#include "substance/SESubstanceClearance.h"
#include "properties/SEScalar0To1.h"
#include "properties/SEScalarMassPerTime.h"
#include "properties/SEScalarVolumePerTimeMass.h"

SESubstanceClearance::SESubstanceClearance(Logger* logger) : Loggable(logger)
{
  m_hasSystemic = false;
  m_ChargeInBlood = eCharge::NullCharge;
  m_FractionExcretedInFeces = nullptr;
  m_FractionExcretedInUrine = nullptr;
  m_FractionMetabolizedInGut = nullptr;
  m_FractionUnboundInPlasma = nullptr;
  m_GlomerularFilterability = nullptr;
  m_IntrinsicClearance = nullptr;
  m_RenalDynamic = RenalDynamic::NullDynamic;
  m_RenalClearance = nullptr;
  m_RenalReabsorptionRatio = nullptr;
  m_RenalTransportMaximum = nullptr;
  m_RenalFiltrationRate = nullptr;
  m_RenalReabsorptionRate = nullptr;
  m_RenalExcretionRate = nullptr;
  m_SystemicClearance = nullptr;
}

SESubstanceClearance::~SESubstanceClearance()
{
  Clear();
}

void SESubstanceClearance::Clear()
{
  m_hasSystemic = false;
  m_ChargeInBlood = eCharge::NullCharge;
  SAFE_DELETE(m_FractionExcretedInFeces);
  SAFE_DELETE(m_FractionExcretedInUrine);
  SAFE_DELETE(m_FractionMetabolizedInGut);
  SAFE_DELETE(m_FractionUnboundInPlasma);
  SAFE_DELETE(m_GlomerularFilterability);
  SAFE_DELETE(m_IntrinsicClearance);
  m_RenalDynamic = RenalDynamic::NullDynamic;
  SAFE_DELETE(m_RenalClearance);
  SAFE_DELETE(m_RenalReabsorptionRatio);
  SAFE_DELETE(m_RenalTransportMaximum);
  SAFE_DELETE(m_RenalFiltrationRate);
  SAFE_DELETE(m_RenalReabsorptionRate);
  SAFE_DELETE(m_RenalExcretionRate);
  SAFE_DELETE(m_SystemicClearance);
}

bool SESubstanceClearance::IsValid() const
{
  if (HasSystemic())
  {
    if (!HasFractionExcretedInFeces())
      return false;
    if (!HasFractionUnboundInPlasma())
      return false;
    if (!HasIntrinsicClearance())
      return false;
    if (!HasRenalClearance())
      return false;
    if (!HasSystemicClearance())
      return false;
  }

  if (HasRenalDynamic())
  {
    if (GetRenalDynamic() == RenalDynamic::Regulation)
    {
      if (!HasChargeInBlood())
        return false;
      if (!HasFractionUnboundInPlasma())
        return false;
      if (!HasRenalReabsorptionRatio())
        return false;
      if (!HasRenalTransportMaximum())
        return false;
    }
    else  if (GetRenalDynamic() == RenalDynamic::Clearance)
    {
      if (!HasRenalClearance())
        return false;
    }
    else
      return false;
  }
  return true;
}

const SEScalar* SESubstanceClearance::GetScalar(const std::string& name)
{
  if (name.compare("FractionExcretedInFeces") == 0)
    return &GetFractionExcretedInFeces();
  if (name.compare("FractionExcretedInUrine") == 0)
    return &GetFractionExcretedInUrine();
  if (name.compare("FractionMetabolizedInGut") == 0)
    return &GetFractionMetabolizedInGut();
  if (name.compare("FractionUnboundInPlasma") == 0)
    return &GetFractionUnboundInPlasma();
  if (name.compare("IntrinsicClearance") == 0)
    return &GetIntrinsicClearance();  
  if (name.compare("GlomerularFilterability") == 0)
    return &GetGlomerularFilterability();
  if(name.compare("RenalClearance") == 0)
    return &GetRenalClearance();
  if (name.compare("RenalReabsorptionRatio") == 0)
    return &GetRenalReabsorptionRatio();
  if (name.compare("RenalTransportMaximum") == 0)
    return &GetRenalTransportMaximum();
  if (name.compare("RenalFiltrationRate") == 0)
    return &GetRenalFiltrationRate();
  if (name.compare("RenalReabsorptionRate") == 0)
    return &GetRenalReabsorptionRate();
  if (name.compare("RenalExcretionRate") == 0)
    return &GetRenalExcretionRate();
  if (name.compare("SystemicClearance") == 0)
    return &GetSystemicClearance();

  return nullptr;
}

eCharge SESubstanceClearance::GetChargeInBlood() const
{
  return m_ChargeInBlood;
}
void SESubstanceClearance::SetChargeInBlood(eCharge c)
{
  m_ChargeInBlood = c;
}
bool SESubstanceClearance::HasChargeInBlood() const
{
  return m_ChargeInBlood == eCharge::NullCharge ? false : true;
}
void SESubstanceClearance::InvalidateChargeInBlood()
{
  m_ChargeInBlood = eCharge::NullCharge;
}

bool SESubstanceClearance::HasFractionExcretedInFeces() const
{
  return (m_FractionExcretedInFeces == nullptr) ? false : m_FractionExcretedInFeces->IsValid();
}
SEScalar0To1& SESubstanceClearance::GetFractionExcretedInFeces()
{
  if (m_FractionExcretedInFeces == nullptr)
    m_FractionExcretedInFeces = new SEScalar0To1();
  return *m_FractionExcretedInFeces;
}
double SESubstanceClearance::GetFractionExcretedInFeces() const
{
  if (m_FractionExcretedInFeces == nullptr)
    return SEScalar::dNaN();
  return m_FractionExcretedInFeces->GetValue();
}

bool SESubstanceClearance::HasFractionExcretedInUrine() const
{
  return (m_FractionExcretedInUrine == nullptr) ? false : m_FractionExcretedInUrine->IsValid();
}
SEScalar0To1& SESubstanceClearance::GetFractionExcretedInUrine()
{
  if (m_FractionExcretedInUrine == nullptr)
    m_FractionExcretedInUrine = new SEScalar0To1();
  return *m_FractionExcretedInUrine;
}
double SESubstanceClearance::GetFractionExcretedInUrine() const
{
  if (m_FractionExcretedInUrine == nullptr)
    return SEScalar::dNaN();
  return m_FractionExcretedInUrine->GetValue();
}

bool SESubstanceClearance::HasFractionMetabolizedInGut() const
{
  return (m_FractionMetabolizedInGut == nullptr) ? false : m_FractionMetabolizedInGut->IsValid();
}
SEScalar0To1& SESubstanceClearance::GetFractionMetabolizedInGut()
{
  if (m_FractionMetabolizedInGut == nullptr)
    m_FractionMetabolizedInGut = new SEScalar0To1();
  return *m_FractionMetabolizedInGut;
}
double SESubstanceClearance::GetFractionMetabolizedInGut() const
{
  if (m_FractionMetabolizedInGut == nullptr)
    return SEScalar::dNaN();
  return m_FractionMetabolizedInGut->GetValue();
}

bool SESubstanceClearance::HasFractionUnboundInPlasma() const
{
  return (m_FractionUnboundInPlasma == nullptr) ? false : m_FractionUnboundInPlasma->IsValid();
}
SEScalar0To1& SESubstanceClearance::GetFractionUnboundInPlasma()
{
  if (m_FractionUnboundInPlasma == nullptr)
    m_FractionUnboundInPlasma = new SEScalar0To1();
  return *m_FractionUnboundInPlasma;
}
double SESubstanceClearance::GetFractionUnboundInPlasma() const
{
  if (m_FractionUnboundInPlasma == nullptr)
    return SEScalar::dNaN();
  return m_FractionUnboundInPlasma->GetValue();
}

bool SESubstanceClearance::HasIntrinsicClearance() const
{
  return (m_IntrinsicClearance == nullptr) ? false : m_IntrinsicClearance->IsValid();
}
SEScalarVolumePerTimeMass& SESubstanceClearance::GetIntrinsicClearance()
{
  if (m_IntrinsicClearance == nullptr)
    m_IntrinsicClearance = new SEScalarVolumePerTimeMass();
  return *m_IntrinsicClearance;
}
double SESubstanceClearance::GetIntrinsicClearance(const VolumePerTimeMassUnit& unit) const
{
  if (m_IntrinsicClearance == nullptr)
    return SEScalar::dNaN();
  return m_IntrinsicClearance->GetValue(unit);
}

RenalDynamic SESubstanceClearance::GetRenalDynamic() const
{
  return m_RenalDynamic;
}
void SESubstanceClearance::SetRenalDynamic(RenalDynamic d)
{
  m_RenalDynamic = d;
}
bool SESubstanceClearance::HasRenalDynamic() const
{
  return m_RenalDynamic == RenalDynamic::NullDynamic ? false : true;
}
void SESubstanceClearance::InvalidateRenalDynamic()
{
  m_RenalDynamic = RenalDynamic::NullDynamic;
}

bool SESubstanceClearance::HasRenalClearance() const
{
  return (m_RenalClearance == nullptr) ? false : m_RenalClearance->IsValid();
}
SEScalarVolumePerTimeMass& SESubstanceClearance::GetRenalClearance()
{
  if (m_RenalClearance == nullptr)
    m_RenalClearance = new SEScalarVolumePerTimeMass();
  return *m_RenalClearance;
}
double SESubstanceClearance::GetRenalClearance(const VolumePerTimeMassUnit& unit) const
{
  if (m_RenalClearance == nullptr)
    return SEScalar::dNaN();
  return m_RenalClearance->GetValue(unit);
}

bool SESubstanceClearance::HasRenalReabsorptionRatio() const
{
  return (m_RenalReabsorptionRatio == nullptr) ? false : m_RenalReabsorptionRatio->IsValid();
}
SEScalar& SESubstanceClearance::GetRenalReabsorptionRatio()
{
  if (m_RenalReabsorptionRatio == nullptr)
    m_RenalReabsorptionRatio = new SEScalar();
  return *m_RenalReabsorptionRatio;
}
double SESubstanceClearance::GetRenalReabsorptionRatio() const
{
  if (m_RenalReabsorptionRatio == nullptr)
    return SEScalar::dNaN();
  return m_RenalReabsorptionRatio->GetValue();
}

bool SESubstanceClearance::HasRenalTransportMaximum() const
{
  return (m_RenalTransportMaximum == nullptr) ? false : m_RenalTransportMaximum->IsValid();
}
SEScalarMassPerTime& SESubstanceClearance::GetRenalTransportMaximum()
{
  if (m_RenalTransportMaximum == nullptr)
    m_RenalTransportMaximum = new SEScalarMassPerTime();
  return *m_RenalTransportMaximum;
}
double SESubstanceClearance::GetRenalTransportMaximum(const MassPerTimeUnit& unit) const
{
  if (m_RenalTransportMaximum == nullptr)
    return SEScalar::dNaN();
  return m_RenalTransportMaximum->GetValue(unit);
}

bool SESubstanceClearance::HasRenalFiltrationRate() const
{
  return (m_RenalFiltrationRate == nullptr) ? false : m_RenalFiltrationRate->IsValid();
}
SEScalarMassPerTime& SESubstanceClearance::GetRenalFiltrationRate()
{
  if (m_RenalFiltrationRate == nullptr)
    m_RenalFiltrationRate = new SEScalarMassPerTime();
  return *m_RenalFiltrationRate;
}
double SESubstanceClearance::GetRenalFiltrationRate(const MassPerTimeUnit& unit) const
{
  if (m_RenalFiltrationRate == nullptr)
    return SEScalar::dNaN();
  return m_RenalFiltrationRate->GetValue(unit);
}

bool SESubstanceClearance::HasRenalReabsorptionRate() const
{
  return (m_RenalReabsorptionRate == nullptr) ? false : m_RenalReabsorptionRate->IsValid();
}
SEScalarMassPerTime& SESubstanceClearance::GetRenalReabsorptionRate()
{
  if (m_RenalReabsorptionRate == nullptr)
    m_RenalReabsorptionRate = new SEScalarMassPerTime();
  return *m_RenalReabsorptionRate;
}
double SESubstanceClearance::GetRenalReabsorptionRate(const MassPerTimeUnit& unit) const
{
  if (m_RenalReabsorptionRate == nullptr)
    return SEScalar::dNaN();
  return m_RenalReabsorptionRate->GetValue(unit);
}

bool SESubstanceClearance::HasRenalExcretionRate() const
{
  return (m_RenalExcretionRate == nullptr) ? false : m_RenalExcretionRate->IsValid();
}
SEScalarMassPerTime& SESubstanceClearance::GetRenalExcretionRate()
{
  if (m_RenalExcretionRate == nullptr)
    m_RenalExcretionRate = new SEScalarMassPerTime();
  return *m_RenalExcretionRate;
}
double SESubstanceClearance::GetRenalExcretionRate(const MassPerTimeUnit& unit) const
{
  if (m_RenalExcretionRate == nullptr)
    return SEScalar::dNaN();
  return m_RenalExcretionRate->GetValue(unit);
}

bool SESubstanceClearance::HasGlomerularFilterability() const
{
  return (m_GlomerularFilterability == nullptr) ? false : m_GlomerularFilterability->IsValid();
}
SEScalar& SESubstanceClearance::GetGlomerularFilterability()
{
  if (m_GlomerularFilterability == nullptr)
    m_GlomerularFilterability = new SEScalar();
  return *m_GlomerularFilterability;
}
double SESubstanceClearance::GetGlomerularFilterability() const
{
  if (m_GlomerularFilterability == nullptr)
    return SEScalar::dNaN();
  return m_GlomerularFilterability->GetValue();
}

bool SESubstanceClearance::HasSystemicClearance() const
{
  return (m_SystemicClearance == nullptr) ? false : m_SystemicClearance->IsValid();
}
SEScalarVolumePerTimeMass& SESubstanceClearance::GetSystemicClearance()
{
  if (m_SystemicClearance == nullptr)
    m_SystemicClearance = new SEScalarVolumePerTimeMass();
  return *m_SystemicClearance;
}
double SESubstanceClearance::GetSystemicClearance(const VolumePerTimeMassUnit& unit) const
{
  if (m_SystemicClearance == nullptr)
    return SEScalar::dNaN();
  return m_SystemicClearance->GetValue(unit);
}
