/*=========================================================================

  Program:   Visualization Toolkit
  Module:    vtkSynchronizedTemplatesCutter3D.cxx

  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
  All rights reserved.
  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
#include "vtkSynchronizedTemplatesCutter3D.h"

#include "vtkCellArray.h"
#include "vtkCellData.h"
#include "vtkCharArray.h"
#include "vtkDoubleArray.h"
#include "vtkExtentTranslator.h"
#include "vtkFloatArray.h"
#include "vtkImplicitFunction.h"
#include "vtkInformation.h"
#include "vtkInformationVector.h"
#include "vtkIntArray.h"
#include "vtkLongArray.h"
#include "vtkMath.h"
#include "vtkObjectFactory.h"
#include "vtkPointData.h"
#include "vtkPolyData.h"
#include "vtkShortArray.h"
#include "vtkStreamingDemandDrivenPipeline.h"
#include "vtkStructuredPoints.h"
#include "vtkUnsignedCharArray.h"
#include "vtkUnsignedIntArray.h"
#include "vtkUnsignedLongArray.h"
#include "vtkUnsignedShortArray.h"

#include <math.h>

vtkStandardNewMacro(vtkSynchronizedTemplatesCutter3D);
vtkCxxSetObjectMacro(vtkSynchronizedTemplatesCutter3D,CutFunction,vtkImplicitFunction);

//----------------------------------------------------------------------------
// Description:
// Construct object with initial scalar range (0,1) and single contour value
// of 0.0. The ImageRange are set to extract the first k-plane.
vtkSynchronizedTemplatesCutter3D::vtkSynchronizedTemplatesCutter3D()
{
  this->CutFunction = 0;
}

//----------------------------------------------------------------------------
vtkSynchronizedTemplatesCutter3D::~vtkSynchronizedTemplatesCutter3D()
{
  this->SetCutFunction(NULL);
}

//----------------------------------------------------------------------------
void vtkSynchronizedTemplatesCutter3DInitializeOutput(
  int *ext,vtkImageData *input, vtkPolyData *o)
{
  vtkPoints *newPts;
  vtkCellArray *newPolys;
  long estimatedSize;  
  
  estimatedSize = (int) pow ((double) 
      ((ext[1]-ext[0]+1)*(ext[3]-ext[2]+1)*(ext[5]-ext[4]+1)), .75);
  if (estimatedSize < 1024)
    {
    estimatedSize = 1024;
    }
  newPts = vtkPoints::New();
  newPts->Allocate(estimatedSize,estimatedSize);
  newPolys = vtkCellArray::New();
  newPolys->Allocate(newPolys->EstimateSize(estimatedSize,3));

  o->GetPointData()->CopyAllOn();
  
  o->GetPointData()->InterpolateAllocate(input->GetPointData(),
                                         estimatedSize,estimatedSize/2);
  o->GetCellData()->CopyAllocate(input->GetCellData(),
                                 estimatedSize,estimatedSize/2);
  
  o->SetPoints(newPts);
  newPts->Delete();

  o->SetPolys(newPolys);
  newPolys->Delete();
}

//----------------------------------------------------------------------------
//
// Contouring filter specialized for images
//
template <class T>
void ContourImage(vtkSynchronizedTemplatesCutter3D *self, int *exExt,
                  vtkImageData *data, vtkPolyData *output, T *ptr)
{
  int *inExt = data->GetExtent();
  int xdim = exExt[1] - exExt[0] + 1;
  int ydim = exExt[3] - exExt[2] + 1;
  double *values = self->GetValues();
  int numContours = self->GetNumberOfContours();
  T *inPtrX, *inPtrY, *inPtrZ;
  T *s0, *s1, *s2, *s3;
  int xMin, xMax, yMin, yMax, zMin, zMax;
  int xInc, yInc, zInc, scalarZInc;
  double *origin = data->GetOrigin();
  double *spacing = data->GetSpacing();
  int *isect1Ptr, *isect2Ptr;
  double y, z, t;
  int i, j, k;
  int zstep, yisectstep;
  int offsets[12];
  int *tablePtr;
  int idx, vidx;
  double x[3], xz[3];
  int v0, v1, v2, v3;
  vtkIdType ptIds[3];
  double value;
  // We need to know the edgePointId's for interpolating attributes.
  int edgePtId, inCellId, outCellId;
  vtkPointData *inPD = data->GetPointData();
  vtkCellData *inCD = data->GetCellData();
  vtkPointData *outPD = output->GetPointData();  
  vtkCellData *outCD = output->GetCellData();  
  // Use to be arguments
  vtkPoints *newPts;
  vtkCellArray *newPolys;
  ptr += self->GetArrayComponent();
  
  vtkSynchronizedTemplatesCutter3DInitializeOutput(exExt, data, output);
  newPts = output->GetPoints();
  newPolys = output->GetPolys();
  
  // this is an exploded execute extent.
  xMin = exExt[0];
  xMax = exExt[1];
  yMin = exExt[2];
  yMax = exExt[3];
  zMin = exExt[4];
  zMax = exExt[5];
  
  vtkImplicitFunction *func = self->GetCutFunction();
  if (!func)
    {
    return;
    }
  
  // implicit functions are 1 component
  xInc = 1;
  yInc = xInc*(inExt[1]-inExt[0]+1);
  zInc = yInc*(inExt[3]-inExt[2]+1);
  scalarZInc = zInc;
  
  // Kens increments, probably to do with edge array
  zstep = xdim*ydim;
  yisectstep = xdim*3;
  // compute offsets probably how to get to the edges in the edge array.
  offsets[0] = -xdim*3;
  offsets[1] = -xdim*3 + 1;
  offsets[2] = -xdim*3 + 2;
  offsets[3] = -xdim*3 + 4;
  offsets[4] = -xdim*3 + 5;
  offsets[5] = 0;
  offsets[6] = 2;
  offsets[7] = 5;
  offsets[8] = (zstep - xdim)*3;
  offsets[9] = (zstep - xdim)*3 + 1;
  offsets[10] = (zstep - xdim)*3 + 4;
  offsets[11] = zstep*3;
    
  // allocate storage array
  int *isect1 = new int [xdim*ydim*3*2];
  // set impossible edges to -1
  for (i = 0; i < ydim; i++)
    {
    isect1[(i+1)*xdim*3-3] = -1;
    isect1[(i+1)*xdim*3*2-3] = -1;
    }
  for (i = 0; i < xdim; i++)
    {
    isect1[((ydim-1)*xdim + i)*3 + 1] = -1;
    isect1[((ydim-1)*xdim + i)*3*2 + 1] = -1;
    }

  // allocate scalar storage for two slices
  T *scalars = 0;
  T *scalars1 = 0;
  T *scalars2 = 0;
  scalars = new T [xdim*ydim*2];
  scalars1 = scalars;
  scalars2 = scalars + xdim*ydim;
    
  // for each contour
  for (vidx = 0; vidx < numContours; vidx++)
    {
    value = values[vidx];
    inPtrZ = ptr;
    
    // fill the first slice
    z = origin[2] + spacing[2]*zMin;
    x[2] = z;
    T *scalarsTmp = scalars1;
    scalars1 = scalars2;
    scalars2 = scalarsTmp;
    for (j = yMin; j <= yMax; j++)
      {
      x[1] = origin[1] + spacing[1]*j;
      for (i = xMin; i <= xMax; i++)
        {
        x[0] = origin[0] + spacing[0]*i;
        *scalarsTmp = func->FunctionValue(x);
        scalarsTmp++;
        }
      }
    scalarZInc = -scalarZInc;
    
    //==================================================================
    for (k = zMin; k <= zMax; k++)
      {
      self->UpdateProgress((double)vidx/numContours + 
                           (k-zMin)/((zMax - zMin+1.0)*numContours));
      inPtrY = inPtrZ;

      // for each slice compute the scalars
      z = origin[2] + spacing[2]*(k+1);
      x[2] = z;
      scalarsTmp = scalars1;
      scalars1 = scalars2;
      scalars2 = scalarsTmp;
      // if not the last slice then get more scalars
      if (k < zMax)
        {
        for (j = yMin; j <= yMax; j++)
          {
          x[1] = origin[1] + spacing[1]*j;
          for (i = xMin; i <= xMax; i++)
            {
            x[0] = origin[0] + spacing[0]*i;
            *scalarsTmp = func->FunctionValue(x);
            scalarsTmp++;
            }
          }
        }
      inPtrY = scalars1;
      scalarZInc = -scalarZInc;

      z = origin[2] + spacing[2]*k;
      x[2] = z;
      
      // swap the buffers
      if (k%2)
        {
        offsets[8] = (zstep - xdim)*3;
        offsets[9] = (zstep - xdim)*3 + 1;
        offsets[10] = (zstep - xdim)*3 + 4;
        offsets[11] = zstep*3;
        isect1Ptr = isect1;
        isect2Ptr = isect1 + xdim*ydim*3;
        }
      else
        { 
        offsets[8] = (-zstep - xdim)*3;
        offsets[9] = (-zstep - xdim)*3 + 1;
        offsets[10] = (-zstep - xdim)*3 + 4;
        offsets[11] = -zstep*3;
        isect1Ptr = isect1 + xdim*ydim*3;
        isect2Ptr = isect1;
        }

      for (j = yMin; j <= yMax; j++)
        {
        // Should not impact performance here/
        edgePtId = (j-inExt[2])*yInc + (k-inExt[4])*zInc;
        // Increments are different for cells.  Since the cells are not
        // contoured until the second row of templates, subtract 1 from
        // i,j,and k.  Note: first cube is formed when i=0, j=1, and k=1.
        inCellId = 
          (xMin-inExt[0]) + (inExt[1]-inExt[0])*
          ( (j-inExt[2]-1) + (k-inExt[4]-1)*(inExt[3]-inExt[2]) );

        y = origin[1] + j*spacing[1];
        xz[1] = y;

        s1 = inPtrY;
        v1 = (*s1 < value ? 0 : 1);
        
        inPtrX = inPtrY;
        for (i = xMin; i <= xMax; i++)
          {
          s0 = s1;
          v0 = v1;
          *isect2Ptr = -1;
          *(isect2Ptr + 1) = -1;
          *(isect2Ptr + 2) = -1;
          if (i < xMax)
            {
            s1 = (inPtrX + xInc);
            v1 = (*s1 < value ? 0 : 1);
            if (v0 ^ v1)
              {
              // watch for degenerate points
              if (*s0 == value)
                {
                if (i > xMin && *(isect2Ptr-3) > -1)
                  {
                  *isect2Ptr = *(isect2Ptr-3);
                  }
                else if (j > yMin && *(isect2Ptr - yisectstep + 1) > -1)
                  {
                  *isect2Ptr = *(isect2Ptr - yisectstep + 1);
                  }
                else if (k > zMin && *(isect1Ptr+2) > -1)
                  {
                  *isect2Ptr = *(isect1Ptr+2);
                  }
                }
              else if (*s1 == value)
                {
                if (j > yMin && *(isect2Ptr - yisectstep +4) > -1)
                  {
                  *isect2Ptr = *(isect2Ptr - yisectstep + 4);
                  }
                else if (k > zMin && i < xMax && *(isect1Ptr + 5) > -1)
                  {
                  *isect2Ptr = *(isect1Ptr + 5);
                  }
                }
              // if the edge has not been set yet then it is a new point
              if (*isect2Ptr == -1)
                {
                t = (value - (double)(*s0)) / ((double)(*s1) - (double)(*s0));
                x[0] = origin[0] + spacing[0]*(i+t);
                x[1] = y;
                *isect2Ptr = newPts->InsertNextPoint(x);
                outPD->InterpolateEdge(inPD, *isect2Ptr, edgePtId, edgePtId+1, t);
                }
              }
            }
          if (j < yMax)
            {
            s2 = (inPtrX + yInc);
            v2 = (*s2 < value ? 0 : 1);
            if (v0 ^ v2)
              {
              if (*s0 == value)
                {
                if (*isect2Ptr > -1)
                  {
                  *(isect2Ptr + 1) = *isect2Ptr;
                  }
                else if (i > xMin && *(isect2Ptr-3) > -1)
                  {
                  *(isect2Ptr + 1) = *(isect2Ptr-3);
                  }
                else if (j > yMin && *(isect2Ptr - yisectstep + 1) > -1)
                  {
                  *(isect2Ptr + 1) = *(isect2Ptr - yisectstep + 1);
                  }
                else if (k > zMin && *(isect1Ptr+2) > -1)
                  {
                  *(isect2Ptr + 1) = *(isect1Ptr+2);
                  }
                }
              else if (*s2 == value && k > zMin && *(isect1Ptr + yisectstep + 2) > -1)
                {
                *(isect2Ptr+1) = *(isect1Ptr + yisectstep + 2);
                }
              // if the edge has not been set yet then it is a new point
              if (*(isect2Ptr + 1) == -1)
                {
                t = (value - (double)(*s0)) / ((double)(*s2) - (double)(*s0));
                x[0] = origin[0] + spacing[0]*i;
                x[1] = y + spacing[1]*t;
                *(isect2Ptr + 1) = newPts->InsertNextPoint(x);
                outPD->InterpolateEdge(inPD, *(isect2Ptr+1), edgePtId, edgePtId+yInc, t);
                }
              }
            }
          if (k < zMax)
            {
            s3 = (inPtrX + scalarZInc);
            v3 = (*s3 < value ? 0 : 1);
            if (v0 ^ v3)
              {
              if (*s0 == value)
                {
                if (*isect2Ptr > -1)
                  {
                  *(isect2Ptr + 2) = *isect2Ptr;
                  }
                else if (*(isect2Ptr+1) > -1)
                  {
                  *(isect2Ptr + 2) = *(isect2Ptr+1);
                  }
                else if (i > xMin && *(isect2Ptr-3) > -1)
                  {
                  *(isect2Ptr + 2) = *(isect2Ptr-3);
                  }
                else if (j > yMin && *(isect2Ptr - yisectstep + 1) > -1)
                  {
                  *(isect2Ptr + 2) = *(isect2Ptr - yisectstep + 1);
                  }
                else if (k > zMin && *(isect1Ptr+2) > -1)
                  {
                  *(isect2Ptr + 2) = *(isect1Ptr+2);
                  }
                }
              if (*(isect2Ptr + 2) == -1)
                {
                t = (value - (double)(*s0)) / ((double)(*s3) - (double)(*s0));
                xz[0] = origin[0] + spacing[0]*i;
                xz[2] = z + spacing[2]*t;
                *(isect2Ptr + 2) = newPts->InsertNextPoint(xz);
                outPD->InterpolateEdge(inPD, *(isect2Ptr+2), edgePtId, edgePtId+zInc, t);
                }
              }
            }
          // To keep track of ids for interpolating attributes.
          ++edgePtId;
          
          // now add any polys that need to be added
          // basically look at the isect values, 
          // form an index and lookup the polys
          if (j > yMin && i < xMax && k > zMin)
            {
            idx = (v0 ? 4096 : 0);
            idx = idx + (*(isect1Ptr - yisectstep) > -1 ? 2048 : 0);
            idx = idx + (*(isect1Ptr -yisectstep +1) > -1 ? 1024 : 0);
            idx = idx + (*(isect1Ptr -yisectstep +2) > -1 ? 512 : 0);
            idx = idx + (*(isect1Ptr -yisectstep +4) > -1 ? 256 : 0);
            idx = idx + (*(isect1Ptr -yisectstep +5) > -1 ? 128 : 0);
            idx = idx + (*(isect1Ptr) > -1 ? 64 : 0);
            idx = idx + (*(isect1Ptr + 2) > -1 ? 32 : 0);
            idx = idx + (*(isect1Ptr + 5) > -1 ? 16 : 0);
            idx = idx + (*(isect2Ptr -yisectstep) > -1 ? 8 : 0);
            idx = idx + (*(isect2Ptr -yisectstep +1) > -1 ? 4 : 0);
            idx = idx + (*(isect2Ptr -yisectstep +4) > -1 ? 2 : 0);
            idx = idx + (*(isect2Ptr) > -1 ? 1 : 0);
            
            tablePtr = VTK_SYNCHRONIZED_TEMPLATES_3D_TABLE_2 
              + VTK_SYNCHRONIZED_TEMPLATES_3D_TABLE_1[idx];
            while (*tablePtr != -1)
              {
              ptIds[0] = *(isect1Ptr + offsets[*tablePtr]);
              tablePtr++;
              ptIds[1] = *(isect1Ptr + offsets[*tablePtr]);
              tablePtr++;
              ptIds[2] = *(isect1Ptr + offsets[*tablePtr]);
              tablePtr++;
              if (ptIds[0] != ptIds[1] &&
                  ptIds[0] != ptIds[2] &&
                  ptIds[1] != ptIds[2])
                {
                outCellId = newPolys->InsertNextCell(3,ptIds);
                outCD->CopyData(inCD, inCellId, outCellId);
                }
              }
            }
          inPtrX += xInc;
          isect2Ptr += 3;
          isect1Ptr += 3;
          // To keep track of ids for copying cell attributes..
          ++inCellId;
          }
        inPtrY += yInc;
        }
      inPtrZ += zInc;
      }
    }
  delete [] isect1;

  if (scalars)
    {
    delete [] scalars;
    }
}

//----------------------------------------------------------------------------
//
// Contouring filter specialized for images (or slices from images)
//
void vtkSynchronizedTemplatesCutter3D::ThreadedExecute(vtkImageData *data,
                                                 vtkInformation *outInfo,
                                                 int *exExt, int)
{
  vtkPolyData *output;

  vtkDebugMacro(<< "Executing Cutter3D structured contour");
  
  output = vtkPolyData::SafeDownCast(outInfo->Get(vtkDataObject::DATA_OBJECT()));
  
  if ( exExt[0] >= exExt[1] || exExt[2] >= exExt[3] || exExt[4] >= exExt[5] )
    {
    vtkDebugMacro(<<"Cutter3D structured contours requires Cutter3D data");
    return;
    }
  
  
  // Check data type and execute appropriate function
  ContourImage(this, exExt, data, output, (double *)0);
}

//----------------------------------------------------------------------------
int vtkSynchronizedTemplatesCutter3D::RequestData(
  vtkInformation *request,
  vtkInformationVector **inputVector,
  vtkInformationVector *outputVector)
{
  // get the info objects
  vtkInformation *inInfo = inputVector[0]->GetInformationObject(0);
  vtkInformation *outInfo = outputVector->GetInformationObject(0);

  // get the input and output
  vtkImageData *input = vtkImageData::SafeDownCast(
    inInfo->Get(vtkDataObject::DATA_OBJECT()));
  vtkPolyData *output = vtkPolyData::SafeDownCast(
    outInfo->Get(vtkDataObject::DATA_OBJECT()));

  // to be safe recompute the 
  this->RequestUpdateExtent(request,inputVector,outputVector);

  // Just call the threaded execute directly.
  this->ThreadedExecute(input, outInfo, this->ExecuteExtent, 0);

  output->Squeeze();

  return 1;
}


//----------------------------------------------------------------------------
void vtkSynchronizedTemplatesCutter3D::PrintSelf(ostream& os, vtkIndent indent)
{
  this->Superclass::PrintSelf(os,indent);
  os << indent << "Cut Function: " << this->CutFunction << "\n";
}

