IOSS  2.0
Iopg_DatabaseIO.h
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32 
33 #ifndef IOSS_Iopg_DatabaseIO_h
34 #define IOSS_Iopg_DatabaseIO_h
35 
36 #include "Ioss_State.h" // for State
37 #include <Ioss_CodeTypes.h>
38 #include <Ioss_DBUsage.h> // for DatabaseUsage
39 #include <Ioss_DatabaseIO.h> // for DatabaseIO
40 #include <Ioss_IOFactory.h> // for IOFactory
41 #include <Ioss_Map.h> // for Map
42 #include <stddef.h> // for size_t
43 #include <stdint.h> // for int64_t
44 #include <string> // for string
45 #include <vector> // for vector
46 
47 namespace Ioss {
48  class CommSet;
49  class EdgeBlock;
50  class EdgeSet;
51  class ElementBlock;
52  class ElementSet;
53  class EntityBlock;
54  class FaceBlock;
55  class FaceSet;
56  class Field;
57  class GroupingEntity;
58  class NodeBlock;
59  class NodeSet;
60  class PropertyManager;
61  class Region;
62  class SideBlock;
63  class SideSet;
64  class StructuredBlock;
65 } // namespace Ioss
66 
67 /** \brief A namespace for the pamgen database format.
68  */
69 namespace Iopg {
70  class IOFactory : public Ioss::IOFactory
71  {
72  public:
73  static const IOFactory *factory();
74 
75  private:
76  IOFactory();
77  Ioss::DatabaseIO *make_IO(const std::string &filename, Ioss::DatabaseUsage db_usage,
78  MPI_Comm communicator, const Ioss::PropertyManager &properties) const;
79  };
80 
82  {
83  public:
84  DatabaseIO(Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage,
85  MPI_Comm communicator, const Ioss::PropertyManager &properties);
86  DatabaseIO(const DatabaseIO &from) = delete;
87  DatabaseIO &operator=(const DatabaseIO &from) = delete;
88  ~DatabaseIO();
89 
90  const std::string get_format() const override { return "PamGen"; }
91 
92  // Check capabilities of input/output database... Returns an
93  // unsigned int with the supported Ioss::EntityTypes or'ed
94  // together. If "return_value & Ioss::EntityType" is set, then the
95  // database supports that type (e.g. return_value & Ioss::FACESET)
96  unsigned entity_field_support() const override
97  {
99  }
100 
101  int int_byte_size_db() const override { return 4; }
102 
103  std::string title() const { return databaseTitle; }
104  int maximum_symbol_length() const override { return 32; }
105 
107  std::vector<std::string> &block_membership) const override;
108 
109  private:
110  void read_meta_data__() override;
111 
112  bool begin__(Ioss::State state) override;
113  bool end__(Ioss::State state) override;
114 
115  void read_region();
117 
118  void get_nodeblocks();
119  void get_elemblocks();
120  void get_nodesets();
121  void get_sidesets();
122  void get_commsets();
123 
124  int get_side_connectivity(const Ioss::SideBlock *fb, int id, int side_count, int *fconnect,
125  size_t data_size) const;
126  int get_side_distributions(const Ioss::SideBlock *fb, int id, int side_count, double *dist_fact,
127  size_t data_size) const;
128 
129  const Ioss::Map &get_node_map() const;
130  const Ioss::Map &get_element_map() const;
131 
132  int64_t get_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data,
133  size_t data_size) const override;
134  int64_t get_field_internal(const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data,
135  size_t data_size) const override;
136  int64_t get_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data,
137  size_t data_size) const override
138  {
139  return 0;
140  }
141  int64_t get_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data,
142  size_t data_size) const override
143  {
144  return 0;
145  }
146  int64_t get_field_internal(const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data,
147  size_t data_size) const override;
148  int64_t get_field_internal(const Ioss::SideBlock *fb, const Ioss::Field &field, void *data,
149  size_t data_size) const override;
150  int64_t get_field_internal(const Ioss::NodeSet *ns, const Ioss::Field &field, void *data,
151  size_t data_size) const override;
152  int64_t get_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data,
153  size_t data_size) const override
154  {
155  return 0;
156  }
157  int64_t get_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data,
158  size_t data_size) const override
159  {
160  return 0;
161  }
162  int64_t get_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data,
163  size_t data_size) const override
164  {
165  return 0;
166  }
167  int64_t get_field_internal(const Ioss::SideSet *fs, const Ioss::Field &field, void *data,
168  size_t data_size) const override;
169  int64_t get_field_internal(const Ioss::CommSet *cs, const Ioss::Field &field, void *data,
170  size_t data_size) const override;
171 
172  int64_t get_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field,
173  void *data, size_t data_size) const override
174  {
175  return 0;
176  }
177 
178  int64_t put_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data,
179  size_t data_size) const override;
180  int64_t put_field_internal(const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data,
181  size_t data_size) const override;
182  int64_t put_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data,
183  size_t data_size) const override
184  {
185  return 0;
186  }
187  int64_t put_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data,
188  size_t data_size) const override
189  {
190  return 0;
191  }
192  int64_t put_field_internal(const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data,
193  size_t data_size) const override;
194  int64_t put_field_internal(const Ioss::SideBlock *fb, const Ioss::Field &field, void *data,
195  size_t data_size) const override;
196  int64_t put_field_internal(const Ioss::NodeSet *ns, const Ioss::Field &field, void *data,
197  size_t data_size) const override;
198  int64_t put_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data,
199  size_t data_size) const override
200  {
201  return 0;
202  }
203  int64_t put_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data,
204  size_t data_size) const override
205  {
206  return 0;
207  }
208  int64_t put_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data,
209  size_t data_size) const override
210  {
211  return 0;
212  }
213  int64_t put_field_internal(const Ioss::SideSet *fs, const Ioss::Field &field, void *data,
214  size_t data_size) const override;
215  int64_t put_field_internal(const Ioss::CommSet *cs, const Ioss::Field &field, void *data,
216  size_t data_size) const override;
217  int64_t put_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field,
218  void *data, size_t data_size) const override
219  {
220  return 0;
221  }
222 
223  std::string databaseTitle;
224 
226 
229  int nodesetCount{0};
230  int sidesetCount{0};
231 
232  // Communication Set Data
239  };
240 } // namespace Iopg
241 #endif // IOSS_Iopg_DatabaseIO_h
Ioss_DBUsage.h
Ioss::Field
Holds metadata for bulk data associated with a GroupingEntity.
Definition: Ioss_Field.h:47
Iopg::DatabaseIO::int_byte_size_db
int int_byte_size_db() const override
Definition: Iopg_DatabaseIO.h:101
Iopg::DatabaseIO::get_commsets
void get_commsets()
Definition: Iopg_DatabaseIO.C:618
Ioss_Map.h
Iopg::DatabaseIO::get_elemblocks
void get_elemblocks()
Definition: Iopg_DatabaseIO.C:447
Ioss::IntVector
std::vector< int > IntVector
Definition: Ioss_CodeTypes.h:51
Iopg::DatabaseIO::elemCmapIds
Ioss::IntVector elemCmapIds
Definition: Iopg_DatabaseIO.h:235
Iopg::DatabaseIO::nodesetCount
int nodesetCount
Definition: Iopg_DatabaseIO.h:229
Iopg::DatabaseIO::put_field_internal
int64_t put_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:182
Iopg::DatabaseIO::get_field_internal
int64_t get_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:172
Iopg::DatabaseIO::get_sidesets
void get_sidesets()
Definition: Iopg_DatabaseIO.C:680
Iopg::DatabaseIO::get_field_internal
int64_t get_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:162
Ioss::NODESET
Definition: Ioss_EntityType.h:44
Iopg::DatabaseIO::get_element_map
const Ioss::Map & get_element_map() const
Definition: Iopg_DatabaseIO.C:1540
Ioss::EdgeBlock
A collection of element edges with the same topology.
Definition: Ioss_EdgeBlock.h:53
Iopg::DatabaseIO::entity_field_support
unsigned entity_field_support() const override
Definition: Iopg_DatabaseIO.h:96
Ioss::DatabaseUsage
DatabaseUsage
Specifies how an Ioss::DatabaseIO object will be used.
Definition: Ioss_DBUsage.h:40
Ioss
The main namespace for the Ioss library.
Definition: Ioad_DatabaseIO.C:66
Iopg::DatabaseIO::spatialDimension
int spatialDimension
Definition: Iopg_DatabaseIO.h:225
Iopg::DatabaseIO::~DatabaseIO
~DatabaseIO()
Definition: Iopg_DatabaseIO.C:140
Iopg::DatabaseIO::nodeCmapNodeCnts
Ioss::IntVector nodeCmapNodeCnts
Definition: Iopg_DatabaseIO.h:234
Ioss::State
State
Access states for a database.
Definition: Ioss_State.h:42
Iopg::DatabaseIO::put_field_internal
int64_t put_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:208
Ioss::IOFactory
The main public user interface for creating Ioss::DatabaseIO objects.
Definition: Ioss_IOFactory.h:58
Iopg::DatabaseIO::get_nodesets
void get_nodesets()
Definition: Iopg_DatabaseIO.C:573
Ioss::Region
A grouping entity that contains other grouping entities.
Definition: Ioss_Region.h:98
Iopg::DatabaseIO::end__
bool end__(Ioss::State state) override
Definition: Iopg_DatabaseIO.C:968
Ioss::NodeSet
A collection of nodes.
Definition: Ioss_NodeSet.h:53
Iopg::DatabaseIO::get_side_distributions
int get_side_distributions(const Ioss::SideBlock *fb, int id, int side_count, double *dist_fact, size_t data_size) const
Definition: Iopg_DatabaseIO.C:1690
Ioss::FaceSet
A collection of element faces.
Definition: Ioss_FaceSet.h:54
Ioss::StructuredBlock
A structured zone – i,j,k.
Definition: Ioss_StructuredBlock.h:103
Ioss::PropertyManager
A collection of Ioss::Property objects.
Definition: Ioss_PropertyManager.h:49
Ioss::EdgeSet
A collection of element edges.
Definition: Ioss_EdgeSet.h:54
Ioss::ElementSet
A collection of elements.
Definition: Ioss_ElementSet.h:54
Ioss::CommSet
Definition: Ioss_CommSet.h:51
Iopg::IOFactory::factory
static const IOFactory * factory()
Definition: Iopg_DatabaseIO.C:109
Iopg::DatabaseIO::put_field_internal
int64_t put_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:203
Ioss::FaceBlock
A collection of element faces with the same topology.
Definition: Ioss_FaceBlock.h:53
Iopg::DatabaseIO::read_communication_metadata
void read_communication_metadata()
Definition: Iopg_DatabaseIO.C:328
Ioss::DatabaseIO::properties
Ioss::PropertyManager properties
Definition: Ioss_DatabaseIO.h:578
Iopg::IOFactory
Definition: Iopg_DatabaseIO.h:70
Iopg::DatabaseIO::get_field_internal
int64_t get_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:152
Iopg::DatabaseIO::get_nodeblocks
void get_nodeblocks()
Definition: Iopg_DatabaseIO.C:434
Ioss::REGION
Definition: Ioss_EntityType.h:52
Ioss::DatabaseIO
An input or output Database.
Definition: Ioss_DatabaseIO.h:82
Ioss::DatabaseIO::DatabaseIO
DatabaseIO()=delete
Iopg::DatabaseIO::databaseTitle
std::string databaseTitle
Definition: Iopg_DatabaseIO.h:223
Iopg::DatabaseIO::nodeCmapIds
Ioss::IntVector nodeCmapIds
Definition: Iopg_DatabaseIO.h:233
Iopg::DatabaseIO::get_field_internal
int64_t get_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:141
Iopg::DatabaseIO::operator=
DatabaseIO & operator=(const DatabaseIO &from)=delete
Ioss_State.h
Ioss::ELEMENTBLOCK
Definition: Ioss_EntityType.h:43
Ioss::SideBlock
A collection of element sides having the same topology.
Definition: Ioss_SideBlock.h:59
Iopg
A namespace for the pamgen database format.
Definition: Iopg_DatabaseIO.C:58
Iopg::DatabaseIO::read_meta_data__
void read_meta_data__() override
Definition: Iopg_DatabaseIO.C:184
Iopg::DatabaseIO::nodeBlockCount
int nodeBlockCount
Definition: Iopg_DatabaseIO.h:227
Ioss::NODEBLOCK
Definition: Ioss_EntityType.h:40
Iopg::DatabaseIO::commsetNodeCount
int commsetNodeCount
Definition: Iopg_DatabaseIO.h:237
Iopg::DatabaseIO::get_side_connectivity
int get_side_connectivity(const Ioss::SideBlock *fb, int id, int side_count, int *fconnect, size_t data_size) const
Definition: Iopg_DatabaseIO.C:1604
Iopg::DatabaseIO::elemCmapElemCnts
Ioss::IntVector elemCmapElemCnts
Definition: Iopg_DatabaseIO.h:236
Ioss_IOFactory.h
Iopg::DatabaseIO::sidesetCount
int sidesetCount
Definition: Iopg_DatabaseIO.h:230
Ioss::ElementBlock
A collection of elements having the same topology.
Definition: Ioss_ElementBlock.h:48
Iopg::DatabaseIO::get_format
const std::string get_format() const override
Definition: Iopg_DatabaseIO.h:90
Iopg::DatabaseIO::get_node_map
const Ioss::Map & get_node_map() const
Definition: Iopg_DatabaseIO.C:1516
Ioss::Map
Definition: Ioss_Map.h:52
Iopg::DatabaseIO::put_field_internal
int64_t put_field_internal(const Ioss::StructuredBlock *sb, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:217
Iopg::DatabaseIO::read_region
void read_region()
Definition: Iopg_DatabaseIO.C:274
Iopg::DatabaseIO::get_field_internal
int64_t get_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:157
Iopg::IOFactory::make_IO
Ioss::DatabaseIO * make_IO(const std::string &filename, Ioss::DatabaseUsage db_usage, MPI_Comm communicator, const Ioss::PropertyManager &properties) const
Definition: Iopg_DatabaseIO.C:117
anonymous_namespace{cth_pressure_map.C}::data
std::vector< char > data
Definition: cth_pressure_map.C:74
Iopg::DatabaseIO::put_field_internal
int64_t put_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:187
Iopg::DatabaseIO::put_field_internal
int64_t put_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:198
Iopg::DatabaseIO
Definition: Iopg_DatabaseIO.h:81
Iopg::DatabaseIO::get_field_internal
int64_t get_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.C:1088
Iopg::DatabaseIO::put_field_internal
int64_t put_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.C:1464
Iopg::DatabaseIO::compute_block_membership__
void compute_block_membership__(Ioss::SideBlock *efblock, std::vector< std::string > &block_membership) const override
Definition: Iopg_DatabaseIO.C:1564
Ioss::NodeBlock
A collection of all nodes in the region.
Definition: Ioss_NodeBlock.h:53
MPI_Comm
int MPI_Comm
Definition: Ioss_CodeTypes.h:96
Iopg::DatabaseIO::title
std::string title() const
Definition: Iopg_DatabaseIO.h:103
Iopg::DatabaseIO::begin__
bool begin__(Ioss::State state) override
Definition: Iopg_DatabaseIO.C:966
Iopg::DatabaseIO::maximum_symbol_length
int maximum_symbol_length() const override
Get the length of the longest name in the database file.
Definition: Iopg_DatabaseIO.h:104
Ioss::SideSet
A collection of element sides.
Definition: Ioss_SideSet.h:53
Ioss_CodeTypes.h
Iopg::DatabaseIO::elementBlockCount
int elementBlockCount
Definition: Iopg_DatabaseIO.h:228
Iopg::DatabaseIO::get_field_internal
int64_t get_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data, size_t data_size) const override
Definition: Iopg_DatabaseIO.h:136
Iopg::IOFactory::IOFactory
IOFactory()
Definition: Iopg_DatabaseIO.C:115
Iopg::DatabaseIO::commsetElemCount
int commsetElemCount
Definition: Iopg_DatabaseIO.h:238
Ioss_DatabaseIO.h
Ioss::SIDESET
Definition: Ioss_EntityType.h:48