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* Remove custom renderers
* Remove local storage for vertices
* Documenting

Small format changes all over the place.

Use the model from SceneObject to laod meshes.

and their tests. Streamline and refactor
time integrators and their tests.

initialized from Vega matrices. The ode rhs
now considers damping only if the coefficients are
positive, non zero. It also accumulates contact forces
if any. The updateAttachedMesh in the VegaVolumetricMesh
class now takes an Eigen vector to do the update.

to just NewtonMethod. Update the solve routine
so it always goes into the armijo loop, subsequent
function norms are computed there. If the user wants
to disable the armijo updated then it should set the
armijoMax in the base class. The armijo function now
takes an extra parameter, the old function evaluation
norm.

in favor of their own "GenerateCompressedRowMajorFormat" routine.

Refactor ObjectSimulator.

classes. Also create a SimulationManager in charge of
running the simulation.

file and add forward declarations.

module.

Alexis Girault authored Jan 14, 2016 and Kitware Robot committed Jan 14, 2016

a41a8090 ENH: Update CameraController architecture
7b9b5153

 BUG: allow DisableMouseInteraction in LaparoscopicCamera
Acked-by: Kitware Robot <kwrobot@kitware.com>
Merge-request: !70

- Migration of the camera update by external device
from VTKViewer to LaparoscopicCameraController.
- Removal of obsolete cameraConfigurationData struct
- Cleaning of unused variables and of style
- Simplification of the cameraController feature
in the LaparoscopicCamera example.

In the LaparoscopicCamera example the mouse interaction
was supposed to be disabled, but by setting the new
interactor style after the viewer initialization, the
observers rules on the vtkViewer interactor were
overridden. Placing the interactorStyle beforehand
resolves the issue.

In the future it would be convenient to have wrapped
functions in IMSTK to make changes to the interactor
without the need to go through VTK.

Alexis Girault authored Jan 12, 2016 and Kitware Robot committed Jan 12, 2016

d994c08e COMP: Cleaning some unused cmake files.
9ef7e318 ENH: Remove VTK includes from submodules' CMakeLists.txt
f6ada232

 COMP: Fix compilation issues for external projects
Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Reviewed-by: Alexis Girault <alexis.girault@kitware.com>
Merge-request: !69

Also, adding ThreadPool to the configuration file.

- Also replace GL/glew by vtk_glew in Core/RenderDetail
- Remove empty first line in those

- Add missing export targets (Solvers, TimeIntegrators, VTKRendering)
- Remove obsolete GLM from SimMedTKConfig.cmake
- Include VRPN libraries in SimMedTKConfig.cmake
- Include VTK in SimMedTKCongig.cmake

Ricardo Ortiz authored Dec 21, 2015 and Kitware Robot committed Dec 21, 2015

56fb5769

 ENH: Time Integrators module.
Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Reviewed-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Merge-request: !63

This module implements forward and backward Euler methods.

ENH: Add unit tests

ENH: Implement Newton's method. Used in the backward Euler method.

Add test for backward euler.

Fix MacOSX compilation error.

BUG: Make sure row major sparse containers are used
for all matrix computations.

Clean up interfaces, fix linking errors and transfer implementations
to cpp files.

Documents methods and variables. Clean solvers test.

Adding more documentation. Clean solver tests and interfaces.

Fix discrepancies in iterative solvers errors. Add more documentation.

Sean Radigan authored Dec 18, 2015 and Kitware Robot committed Dec 18, 2015

4a2b2e56

 COMP: Suppress Clang override warnings from VTK
Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Merge-request: !66

Sean Radigan authored Dec 18, 2015 and Kitware Robot committed Dec 18, 2015

f7d0354c

 BUG: Fixed examples to properly shutdown
Acked-by: Kitware Robot <kwrobot@kitware.com>
Acked-by: Ricardo Ortiz <ricardo.ortiz@kitware.com>
Merge-request: !65

VRPNDeviceServer did not properly setting framework termination flags
VRPNDeviceServer was also wrapping vrpn_Connection in a shared_ptr,
this was causing a double delete because vrpn_ConnectionManager
cleans up after connections made with vrpn_create_server_connection()

BUG: Enable solver module.

Add namespace to matrices.

Closes #61

See merge request !64

Add namespace to matrices.

Closes #61

Solvers module

This solvers module contains interfaces to solve linear and non-linear systems of equations. 

See merge request !62

Add a flag to computer the residual for iterative methods
changes to SOR and Gauss-Seidel methods

Conflicts:
	Solvers/BackwardSOR.h
	Solvers/ForwardGaussSeidel.cpp

Adds base classes for solver module.
Adds various iterative and direct solvers: Conjugate gradient, Gauss-Seidel

Conflicts:
	Solvers/CMakeLists.txt
	Solvers/SolverBase.h

Vtk shaders

Starting merge request for vtk shaders, pulled from ricardo branch, implemented mostly by tansel, rebased on master, with cleaning and corrections made by me.

This is a Work in Progress. do not merge. We need to review this altogether with @ricardo-ortiz 

This deprecates an old texture handling, but we need to work on integrating the new implementation, for example if there are no shaders. Also maybe look into getting rid of the use of static objects.

@tanselhalic could you maybe give a description of your work on the shaders and the textures? Also please wait until this is merged to contribute your new changes, so we can start from a clean base again.

Thank you all. Let's get this merged!

See merge request !61

All examples should follow the same conventions.
Name of the application should match the directory name containing it.

AVMNidus was used to test the shaders, but
was not showcasing its main usage anymore.

This commit divides the example by migrating
the Shaders test into another example (Shaders)

Also incorporated the data for this new example
in MIDAS to download it during the build.

Also fixed some shaders errors.

Removing RenderDelegates, OpenGLRenderer, OpenGLViewer

- need glew.h in Core/RenderDetail for GLint
- need to link against Geometry in AVMNidus
- remove duplicated library in Rendering

- Remove RenderDetail::setTextureFilename() and co.
- Remove MeshModel::addTexture()
- Remove SurfaceMesh::assignTexture() and co.
- Use RenderDetail::addTexture()

Still need to assign texture in model?