###############################################################################
 # This file is part of SWIFT.
 # Copyright (c) 2016 Matthieu Schaller (matthieu.schaller@durham.ac.uk)
 # 
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU Lesser General Public License as published
 # by the Free Software Foundation, either version 3 of the License, or
 # (at your option) any later version.
 # 
 # This program is distributed in the hope that it will be useful,
 # but WITHOUT ANY WARRANTY; without even the implied warranty of
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 # GNU General Public License for more details.
 # 
 # You should have received a copy of the GNU Lesser General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 # 
 ##############################################################################

import h5py
from numpy import *

# Generates a swift IC file for the Gresho-Chan vortex in a periodic box

# Parameters
gamma = 5./3.     # Gas adiabatic index
rho0 = 1           # Gas density
P0 = 0.           # Constant additional pressure (should have no impact on the dynamics)
fileOutputName = "greshoVortex.hdf5" 
fileGlass = "glassPlane_128.hdf5"
#---------------------------------------------------

# Get position and smoothing lengths from the glass
fileInput = h5py.File(fileGlass, 'r')
coords = fileInput["/PartType0/Coordinates"][:,:]
h = fileInput["/PartType0/SmoothingLength"][:]
ids = fileInput["/PartType0/ParticleIDs"][:]
boxSize = fileInput["/Header"].attrs["BoxSize"][0]
numPart = size(h)
fileInput.close()

# Now generate the rest
m = ones(numPart) * rho0 * boxSize**2 / numPart
u = zeros(numPart)
v = zeros((numPart, 3))

for i in range(numPart):
    
    x = coords[i,0]
    y = coords[i,1]

    r2 = (x - boxSize / 2)**2 + (y - boxSize / 2)**2
    r = sqrt(r2)

    v_phi = 0.
    if r < 0.2:
        v_phi = 5.*r
    elif r < 0.4:
        v_phi = 2. - 5.*r
    else:
        v_phi = 0.
    v[i,0] = -v_phi * (y - boxSize / 2) / r
    v[i,1] =  v_phi * (x - boxSize / 2) / r
    v[i,2] = 0.

    P = P0
    if r < 0.2:
        P = P + 5. + 12.5*r2
    elif r < 0.4:
        P = P + 9. + 12.5*r2 - 20.*r + 4.*log(r/0.2)
    else:
        P = P + 3. + 4.*log(2.)
    u[i] = P / ((gamma - 1.)*rho0)
    


#File
fileOutput = h5py.File(fileOutputName, 'w')

# Header
grp = fileOutput.create_group("/Header")
grp.attrs["BoxSize"] = [boxSize, boxSize, 0.2]
grp.attrs["NumPart_Total"] =  [numPart, 0, 0, 0, 0, 0]
grp.attrs["NumPart_Total_HighWord"] = [0, 0, 0, 0, 0, 0]
grp.attrs["NumPart_ThisFile"] = [numPart, 0, 0, 0, 0, 0]
grp.attrs["Time"] = 0.0
grp.attrs["NumFileOutputsPerSnapshot"] = 1
grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
grp.attrs["Flag_Entropy_ICs"] = [0, 0, 0, 0, 0, 0]
grp.attrs["Dimension"] = 2

#Runtime parameters
grp = fileOutput.create_group("/RuntimePars")
grp.attrs["PeriodicBoundariesOn"] = 1

#Units
grp = fileOutput.create_group("/Units")
grp.attrs["Unit length in cgs (U_L)"] = 1.
grp.attrs["Unit mass in cgs (U_M)"] = 1.
grp.attrs["Unit time in cgs (U_t)"] = 1.
grp.attrs["Unit current in cgs (U_I)"] = 1.
grp.attrs["Unit temperature in cgs (U_T)"] = 1.

#Particle group
grp = fileOutput.create_group("/PartType0")
ds = grp.create_dataset('Coordinates', (numPart, 3), 'd')
ds[()] = coords
ds = grp.create_dataset('Velocities', (numPart, 3), 'f')
ds[()] = v
ds = grp.create_dataset('Masses', (numPart, 1), 'f')
ds[()] = m.reshape((numPart,1))
ds = grp.create_dataset('SmoothingLength', (numPart,1), 'f')
ds[()] = h.reshape((numPart,1))
ds = grp.create_dataset('InternalEnergy', (numPart,1), 'f')
ds[()] = u.reshape((numPart,1))
ds = grp.create_dataset('ParticleIDs', (numPart,1), 'L')
ds[()] = ids.reshape((numPart,1))

fileOutput.close()


