From 9abce9929c3444f4d2b751e78d079e779aebe2e9 Mon Sep 17 00:00:00 2001 From: Sean McBride Date: Fri, 19 May 2017 22:04:03 -0400 Subject: [PATCH 0001/1015] Use a C++11 enum for the VTK_IMAGE_BORDER_ defines --- .../Testing/Cxx/ImageBSplineCoefficients.cxx | 5 +-- Imaging/Core/vtkAbstractImageInterpolator.cxx | 2 +- Imaging/Core/vtkAbstractImageInterpolator.h | 15 +++++---- Imaging/Core/vtkImageBSplineCoefficients.cxx | 2 +- Imaging/Core/vtkImageBSplineCoefficients.h | 6 ++-- Imaging/Core/vtkImageBSplineInternals.cxx | 33 +++++++++---------- Imaging/Core/vtkImageBSplineInternals.h | 16 ++++----- Imaging/Core/vtkImageInterpolatorInternals.h | 3 +- Imaging/Core/vtkImageReslice.cxx | 2 +- 9 files changed, 44 insertions(+), 40 deletions(-) diff --git a/Imaging/Core/Testing/Cxx/ImageBSplineCoefficients.cxx b/Imaging/Core/Testing/Cxx/ImageBSplineCoefficients.cxx index 11acd5190b58..d8bf60e859a9 100644 --- a/Imaging/Core/Testing/Cxx/ImageBSplineCoefficients.cxx +++ b/Imaging/Core/Testing/Cxx/ImageBSplineCoefficients.cxx @@ -89,7 +89,8 @@ int ImageBSplineCoefficients(int argc, char* argv[]) { 6.08451, 185.60837, 0.0 }, }; - int modes[3] = { VTK_IMAGE_BORDER_CLAMP, VTK_IMAGE_BORDER_REPEAT, VTK_IMAGE_BORDER_MIRROR }; + vtkImageBorderMode modes[3] = { VTK_IMAGE_BORDER_CLAMP, VTK_IMAGE_BORDER_REPEAT, + VTK_IMAGE_BORDER_MIRROR }; int m = VTK_IMAGE_BSPLINE_DEGREE_MAX; @@ -97,7 +98,7 @@ int ImageBSplineCoefficients(int argc, char* argv[]) { for (int jj = 0; jj < 3; jj++) { - int mode = modes[jj]; + vtkImageBorderMode mode = modes[jj]; coeffs->SetSplineDegree(j); coeffs->SetBorderMode(mode); diff --git a/Imaging/Core/vtkAbstractImageInterpolator.cxx b/Imaging/Core/vtkAbstractImageInterpolator.cxx index 24c3710206d9..8d9440438b14 100644 --- a/Imaging/Core/vtkAbstractImageInterpolator.cxx +++ b/Imaging/Core/vtkAbstractImageInterpolator.cxx @@ -149,7 +149,7 @@ void vtkAbstractImageInterpolator::PrintSelf(ostream& os, vtkIndent indent) } //------------------------------------------------------------------------------ -void vtkAbstractImageInterpolator::SetBorderMode(int mode) +void vtkAbstractImageInterpolator::SetBorderMode(vtkImageBorderMode mode) { mode = vtkMath::ClampValue(mode, VTK_IMAGE_BORDER_CLAMP, VTK_IMAGE_BORDER_MIRROR); if (this->BorderMode != mode) diff --git a/Imaging/Core/vtkAbstractImageInterpolator.h b/Imaging/Core/vtkAbstractImageInterpolator.h index 564ce6947f63..371126f0c66c 100644 --- a/Imaging/Core/vtkAbstractImageInterpolator.h +++ b/Imaging/Core/vtkAbstractImageInterpolator.h @@ -33,9 +33,12 @@ #include "vtkImagingCoreModule.h" // For export macro #include "vtkObject.h" -#define VTK_IMAGE_BORDER_CLAMP 0 -#define VTK_IMAGE_BORDER_REPEAT 1 -#define VTK_IMAGE_BORDER_MIRROR 2 +enum vtkImageBorderMode : int +{ + VTK_IMAGE_BORDER_CLAMP = 0, + VTK_IMAGE_BORDER_REPEAT = 1, + VTK_IMAGE_BORDER_MIRROR = 2, +}; class vtkDataObject; class vtkImageData; @@ -164,11 +167,11 @@ public: * bounds. The other modes wrap around to the opposite boundary, or * mirror the image at the boundary. */ - void SetBorderMode(int mode); + void SetBorderMode(vtkImageBorderMode mode); void SetBorderModeToClamp() { this->SetBorderMode(VTK_IMAGE_BORDER_CLAMP); } void SetBorderModeToRepeat() { this->SetBorderMode(VTK_IMAGE_BORDER_REPEAT); } void SetBorderModeToMirror() { this->SetBorderMode(VTK_IMAGE_BORDER_MIRROR); } - int GetBorderMode() { return this->BorderMode; } + vtkImageBorderMode GetBorderMode() { return this->BorderMode; } const char* GetBorderModeAsString(); ///@} @@ -308,7 +311,7 @@ protected: double Origin[3]; double OutValue; double Tolerance; - int BorderMode; + vtkImageBorderMode BorderMode; int ComponentOffset; int ComponentCount; bool SlidingWindow; diff --git a/Imaging/Core/vtkImageBSplineCoefficients.cxx b/Imaging/Core/vtkImageBSplineCoefficients.cxx index 6ffa4d2417c2..a460823ae844 100644 --- a/Imaging/Core/vtkImageBSplineCoefficients.cxx +++ b/Imaging/Core/vtkImageBSplineCoefficients.cxx @@ -228,7 +228,7 @@ void vtkImageBSplineCoefficientsExecute(vtkImageBSplineCoefficients* self, vtkIm // change the order so the inner loop is the chosen axis static const int permute[3][3] = { { 0, 1, 2 }, { 1, 0, 2 }, { 2, 0, 1 } }; - int borderMode = self->GetBorderMode(); + vtkImageBorderMode borderMode = self->GetBorderMode(); int inExtent[6]; inData->GetExtent(inExtent); diff --git a/Imaging/Core/vtkImageBSplineCoefficients.h b/Imaging/Core/vtkImageBSplineCoefficients.h index afcb0d95e2df..4ae0cbe0763c 100644 --- a/Imaging/Core/vtkImageBSplineCoefficients.h +++ b/Imaging/Core/vtkImageBSplineCoefficients.h @@ -76,11 +76,11 @@ public: * mirrored copies, which results in optimal smoothness at the boundary, * or to repeat the image, which results in a cyclic or periodic spline. */ - vtkSetClampMacro(BorderMode, int, VTK_IMAGE_BORDER_CLAMP, VTK_IMAGE_BORDER_MIRROR); + vtkSetClampMacro(BorderMode, vtkImageBorderMode, VTK_IMAGE_BORDER_CLAMP, VTK_IMAGE_BORDER_MIRROR); void SetBorderModeToClamp() { this->SetBorderMode(VTK_IMAGE_BORDER_CLAMP); } void SetBorderModeToRepeat() { this->SetBorderMode(VTK_IMAGE_BORDER_REPEAT); } void SetBorderModeToMirror() { this->SetBorderMode(VTK_IMAGE_BORDER_MIRROR); } - vtkGetMacro(BorderMode, int); + vtkGetMacro(BorderMode, vtkImageBorderMode); const char* GetBorderModeAsString(); ///@} @@ -145,7 +145,7 @@ protected: vtkImageData* inData, vtkImageData* outData, int outExt[6], int threadId) override; int SplineDegree; - int BorderMode; + vtkImageBorderMode BorderMode; int OutputScalarType; vtkTypeBool Bypass; int DataWasPassed; diff --git a/Imaging/Core/vtkImageBSplineInternals.cxx b/Imaging/Core/vtkImageBSplineInternals.cxx index e8051327dcae..7f1e51d63a00 100644 --- a/Imaging/Core/vtkImageBSplineInternals.cxx +++ b/Imaging/Core/vtkImageBSplineInternals.cxx @@ -44,12 +44,12 @@ /*--------------------------------------------------------------------------*/ void vtkImageBSplineInternals::ConvertToInterpolationCoefficients( - double c[], /* input samples --> output coefficients */ - long DataLength, /* number of samples or coefficients */ - long Border, /* border mode */ - double z[], /* poles */ - long NbPoles, /* number of poles */ - double Tolerance /* admissible relative error */ + double c[], /* input samples --> output coefficients */ + long DataLength, /* number of samples or coefficients */ + vtkImageBorderMode Border, /* border mode */ + double z[], /* poles */ + long NbPoles, /* number of poles */ + double Tolerance /* admissible relative error */ ) { /* begin ConvertToInterpolationCoefficients */ @@ -95,11 +95,10 @@ void vtkImageBSplineInternals::ConvertToInterpolationCoefficients( /*--------------------------------------------------------------------------*/ double vtkImageBSplineInternals::InitialCausalCoefficient(double c[], /* coefficients */ long DataLength, /* number of coefficients */ - long Border, /* border mode */ + vtkImageBorderMode Border, /* border mode */ double z, /* actual pole */ double Tolerance /* admissible relative error */ ) - { /* begin InitialCausalCoefficient */ double Sum, zn, z2n, iz; @@ -220,12 +219,11 @@ double vtkImageBSplineInternals::InitialCausalCoefficient(double c[], /* coeffic /*--------------------------------------------------------------------------*/ double vtkImageBSplineInternals::InitialAntiCausalCoefficient(double c[], /* coefficients */ - long DataLength, /* number of samples or coefficients */ - long Border, /* border mode */ - double z, /* actual pole */ - double Tolerance /* admissible relative error */ + long DataLength, /* number of samples or coefficients */ + vtkImageBorderMode Border, /* border mode */ + double z, /* actual pole */ + double Tolerance /* admissible relative error */ ) - { /* begin InitialAntiCausalCoefficient */ double Sum; double zn; @@ -613,9 +611,8 @@ int vtkImageBSplineInterpolatedValue(const T* Bcoeff, /* input B-spline array of double y, /* y coordinate where to interpolate */ double z, /* y coordinate where to interpolate */ long SplineDegree, /* degree of the spline model */ - long Border /* what to do at the border */ + vtkImageBorderMode Border /* what to do at the border */ ) - { /* begin InterpolatedValue */ const T *p1, *p2, *p3; @@ -838,14 +835,16 @@ int vtkImageBSplineInternals::GetInterpolationWeights(double weights[10], double /*--------------------------------------------------------------------------*/ int vtkImageBSplineInternals::InterpolatedValue(const double* coeffs, double* value, long width, - long height, long slices, long depth, double x, double y, double z, long degree, long border) + long height, long slices, long depth, double x, double y, double z, long degree, + vtkImageBorderMode border) { return vtkImageBSplineInterpolatedValue( coeffs, value, width, height, slices, depth, x, y, z, degree, border); } int vtkImageBSplineInternals::InterpolatedValue(const float* coeffs, float* value, long width, - long height, long slices, long depth, double x, double y, double z, long degree, long border) + long height, long slices, long depth, double x, double y, double z, long degree, + vtkImageBorderMode border) { return vtkImageBSplineInterpolatedValue( coeffs, value, width, height, slices, depth, x, y, z, degree, border); diff --git a/Imaging/Core/vtkImageBSplineInternals.h b/Imaging/Core/vtkImageBSplineInternals.h index b66fc82594f5..662bdd161ea6 100644 --- a/Imaging/Core/vtkImageBSplineInternals.h +++ b/Imaging/Core/vtkImageBSplineInternals.h @@ -36,7 +36,8 @@ #ifndef vtkImageBSplineInternals_h #define vtkImageBSplineInternals_h -#include "vtkImagingCoreModule.h" // For export macro +#include "vtkAbstractImageInterpolator.h" // For vtkImageBorderMode +#include "vtkImagingCoreModule.h" // For export macro #include "vtkSystemIncludes.h" class VTKIMAGINGCORE_EXPORT vtkImageBSplineInternals @@ -52,8 +53,8 @@ public: /** * Internal method. Compute the coefficients for one row of data. */ - static void ConvertToInterpolationCoefficients(double data[], long size, long border, - double poles[4], long numPoles, double tol) VTK_SIZEHINT(data, size); + static void ConvertToInterpolationCoefficients(double data[], long size, + vtkImageBorderMode border, double poles[4], long numPoles, double tol) VTK_SIZEHINT(data, size); ///@{ /** @@ -70,20 +71,19 @@ public: * of coefficients with dimensions width x height x slices. */ static int InterpolatedValue(const double* coeffs, double* value, long width, long height, - long slices, long depth, double x, double y, double z, long degree, long border); + long slices, long depth, double x, double y, double z, long degree, vtkImageBorderMode border); static int InterpolatedValue(const float* coeffs, float* value, long width, long height, - long slices, long depth, double x, double y, double z, long degree, long border); - ///@} + long slices, long depth, double x, double y, double z, long degree, vtkImageBorderMode border); protected: vtkImageBSplineInternals() = default; ~vtkImageBSplineInternals() = default; static double InitialCausalCoefficient( - double data[], long size, long border, double pole, double tol); + double data[], long size, vtkImageBorderMode border, double pole, double tol); static double InitialAntiCausalCoefficient( - double data[], long size, long border, double pole, double tol); + double data[], long size, vtkImageBorderMode border, double pole, double tol); private: vtkImageBSplineInternals(const vtkImageBSplineInternals&) = delete; diff --git a/Imaging/Core/vtkImageInterpolatorInternals.h b/Imaging/Core/vtkImageInterpolatorInternals.h index 530bb719a5d1..480e4c5f3d09 100644 --- a/Imaging/Core/vtkImageInterpolatorInternals.h +++ b/Imaging/Core/vtkImageInterpolatorInternals.h @@ -20,6 +20,7 @@ #ifndef vtkImageInterpolatorInternals_h #define vtkImageInterpolatorInternals_h +#include "vtkAbstractImageInterpolator.h" #include "vtkEndian.h" #include "vtkMath.h" @@ -31,7 +32,7 @@ struct vtkInterpolationInfo vtkIdType Increments[3]; int ScalarType; int NumberOfComponents; - int BorderMode; + vtkImageBorderMode BorderMode; int InterpolationMode; void* ExtraInfo; diff --git a/Imaging/Core/vtkImageReslice.cxx b/Imaging/Core/vtkImageReslice.cxx index 40d8afe2f592..982cb09fbda9 100644 --- a/Imaging/Core/vtkImageReslice.cxx +++ b/Imaging/Core/vtkImageReslice.cxx @@ -1181,7 +1181,7 @@ int vtkImageReslice::RequestInformationBase( { static_cast(interpolator)->SetInterpolationMode(interpolationMode); } - int borderMode = VTK_IMAGE_BORDER_CLAMP; + vtkImageBorderMode borderMode = VTK_IMAGE_BORDER_CLAMP; borderMode = (this->Wrap ? VTK_IMAGE_BORDER_REPEAT : borderMode); borderMode = (this->Mirror ? VTK_IMAGE_BORDER_MIRROR : borderMode); interpolator->SetBorderMode(borderMode); -- GitLab From 0bbdd784de843164136ee33f17e25d7d03d09859 Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Wed, 16 Mar 2022 15:58:46 -0600 Subject: [PATCH 0002/1015] Make wrapping ignore inline namespace declarations With this change, inline namespaces do not appear within the wrapper-generated code. Each copy of the wrappers is locked to a specific version of VTK (and currently, each instance of the Python interpreter instance can only import one copy of the wrappers). --- Wrapping/Tools/vtkParse.tab.c | 2249 +++++++++++++++++---------------- Wrapping/Tools/vtkParse.y | 1 + 2 files changed, 1127 insertions(+), 1123 deletions(-) diff --git a/Wrapping/Tools/vtkParse.tab.c b/Wrapping/Tools/vtkParse.tab.c index a48e067ca64e..ff8d4a01ea75 100644 --- a/Wrapping/Tools/vtkParse.tab.c +++ b/Wrapping/Tools/vtkParse.tab.c @@ -1948,16 +1948,16 @@ typedef unsigned char yybool; /* YYFINAL -- State number of the termination state. */ #define YYFINAL 3 /* YYLAST -- Last index in YYTABLE. */ -#define YYLAST 6573 +#define YYLAST 6587 /* YYNTOKENS -- Number of terminals. */ #define YYNTOKENS 124 /* YYNNTS -- Number of nonterminals. */ #define YYNNTS 277 /* YYNRULES -- Number of rules. */ -#define YYNRULES 672 +#define YYNRULES 673 /* YYNRULES -- Number of states. */ -#define YYNSTATES 1045 +#define YYNSTATES 1051 /* YYMAXRHS -- Maximum number of symbols on right-hand side of rule. */ #define YYMAXRHS 8 /* YYMAXLEFT -- Maximum number of symbols to the left of a handle @@ -1989,47 +1989,47 @@ static const unsigned char yytranslate[] = { 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, /* YYRLINE[YYN] -- source line where rule number YYN was defined. */ static const unsigned short yyrline[] = { 0, 1797, 1797, 1799, 1801, 1800, 1811, 1812, 1813, 1814, 1815, 1816, 1817, 1818, 1819, 1820, 1821, 1822, 1823, 1824, 1825, 1826, 1827, 1830, 1831, 1832, - 1833, 1834, 1835, 1838, 1839, 1846, 1853, 1854, 1854, 1858, 1865, 1866, 1869, 1870, 1871, 1874, - 1875, 1878, 1878, 1893, 1892, 1898, 1904, 1903, 1908, 1914, 1915, 1916, 1919, 1921, 1923, 1926, - 1927, 1930, 1931, 1933, 1935, 1934, 1943, 1947, 1948, 1949, 1952, 1953, 1954, 1955, 1956, 1957, - 1958, 1959, 1960, 1961, 1962, 1963, 1964, 1965, 1968, 1969, 1970, 1971, 1972, 1973, 1976, 1977, - 1978, 1979, 1983, 1984, 1987, 1989, 1992, 1997, 1998, 2001, 2002, 2005, 2006, 2007, 2018, 2019, - 2020, 2024, 2025, 2029, 2029, 2042, 2049, 2058, 2059, 2060, 2063, 2064, 2064, 2068, 2069, 2071, - 2072, 2073, 2073, 2081, 2085, 2086, 2089, 2091, 2093, 2094, 2097, 2098, 2106, 2107, 2110, 2111, - 2113, 2115, 2117, 2121, 2123, 2124, 2127, 2130, 2131, 2134, 2135, 2134, 2139, 2181, 2184, 2185, - 2186, 2188, 2190, 2192, 2196, 2199, 2199, 2232, 2231, 2235, 2243, 2234, 2253, 2255, 2254, 2259, - 2261, 2259, 2263, 2265, 2263, 2267, 2270, 2267, 2281, 2282, 2285, 2286, 2288, 2289, 2292, 2292, - 2302, 2303, 2311, 2312, 2313, 2314, 2317, 2320, 2321, 2322, 2325, 2326, 2327, 2330, 2331, 2332, - 2336, 2337, 2338, 2339, 2342, 2343, 2344, 2348, 2353, 2347, 2365, 2369, 2380, 2379, 2388, 2392, - 2395, 2405, 2409, 2410, 2413, 2414, 2416, 2417, 2418, 2421, 2422, 2424, 2425, 2426, 2428, 2429, - 2432, 2445, 2446, 2447, 2448, 2455, 2456, 2459, 2459, 2467, 2468, 2469, 2472, 2474, 2475, 2479, - 2478, 2495, 2519, 2491, 2530, 2530, 2533, 2534, 2537, 2538, 2541, 2542, 2548, 2549, 2549, 2552, - 2553, 2553, 2555, 2557, 2561, 2563, 2561, 2587, 2588, 2591, 2591, 2593, 2593, 2595, 2595, 2600, - 2601, 2601, 2609, 2612, 2682, 2683, 2685, 2686, 2686, 2689, 2692, 2693, 2697, 2709, 2708, 2730, - 2732, 2732, 2753, 2753, 2755, 2759, 2760, 2761, 2760, 2766, 2768, 2769, 2770, 2771, 2772, 2773, - 2776, 2777, 2781, 2782, 2786, 2787, 2790, 2791, 2795, 2796, 2797, 2798, 2801, 2802, 2805, 2805, - 2808, 2809, 2812, 2812, 2816, 2817, 2817, 2824, 2825, 2828, 2829, 2830, 2831, 2832, 2835, 2837, - 2839, 2843, 2845, 2847, 2849, 2851, 2853, 2855, 2855, 2860, 2863, 2866, 2869, 2869, 2877, 2877, - 2886, 2887, 2888, 2889, 2890, 2891, 2892, 2893, 2894, 2901, 2902, 2903, 2904, 2905, 2906, 2912, - 2913, 2916, 2917, 2919, 2920, 2923, 2924, 2927, 2928, 2929, 2930, 2933, 2934, 2935, 2936, 2937, - 2941, 2942, 2943, 2946, 2947, 2950, 2951, 2959, 2962, 2962, 2964, 2964, 2968, 2969, 2971, 2975, - 2976, 2978, 2978, 2981, 2983, 2987, 2990, 2990, 2992, 2992, 2996, 2999, 2999, 3001, 3001, 3005, - 3006, 3008, 3010, 3012, 3014, 3016, 3020, 3021, 3024, 3025, 3026, 3027, 3028, 3029, 3030, 3031, - 3032, 3035, 3036, 3037, 3038, 3039, 3040, 3041, 3042, 3043, 3044, 3045, 3046, 3047, 3048, 3049, - 3069, 3070, 3071, 3072, 3075, 3079, 3083, 3083, 3087, 3088, 3103, 3104, 3129, 3129, 3133, 3133, - 3137, 3137, 3141, 3141, 3145, 3145, 3149, 3149, 3152, 3153, 3156, 3160, 3161, 3164, 3167, 3168, - 3169, 3170, 3173, 3173, 3177, 3178, 3181, 3182, 3185, 3186, 3193, 3194, 3195, 3196, 3197, 3198, - 3199, 3200, 3201, 3202, 3203, 3204, 3207, 3208, 3209, 3210, 3211, 3212, 3213, 3214, 3215, 3216, + 1833, 1834, 1835, 1838, 1839, 1846, 1853, 1854, 1854, 1856, 1859, 1866, 1867, 1870, 1871, 1872, + 1875, 1876, 1879, 1879, 1894, 1893, 1899, 1905, 1904, 1909, 1915, 1916, 1917, 1920, 1922, 1924, + 1927, 1928, 1931, 1932, 1934, 1936, 1935, 1944, 1948, 1949, 1950, 1953, 1954, 1955, 1956, 1957, + 1958, 1959, 1960, 1961, 1962, 1963, 1964, 1965, 1966, 1969, 1970, 1971, 1972, 1973, 1974, 1977, + 1978, 1979, 1980, 1984, 1985, 1988, 1990, 1993, 1998, 1999, 2002, 2003, 2006, 2007, 2008, 2019, + 2020, 2021, 2025, 2026, 2030, 2030, 2043, 2050, 2059, 2060, 2061, 2064, 2065, 2065, 2069, 2070, + 2072, 2073, 2074, 2074, 2082, 2086, 2087, 2090, 2092, 2094, 2095, 2098, 2099, 2107, 2108, 2111, + 2112, 2114, 2116, 2118, 2122, 2124, 2125, 2128, 2131, 2132, 2135, 2136, 2135, 2140, 2182, 2185, + 2186, 2187, 2189, 2191, 2193, 2197, 2200, 2200, 2233, 2232, 2236, 2244, 2235, 2254, 2256, 2255, + 2260, 2262, 2260, 2264, 2266, 2264, 2268, 2271, 2268, 2282, 2283, 2286, 2287, 2289, 2290, 2293, + 2293, 2303, 2304, 2312, 2313, 2314, 2315, 2318, 2321, 2322, 2323, 2326, 2327, 2328, 2331, 2332, + 2333, 2337, 2338, 2339, 2340, 2343, 2344, 2345, 2349, 2354, 2348, 2366, 2370, 2381, 2380, 2389, + 2393, 2396, 2406, 2410, 2411, 2414, 2415, 2417, 2418, 2419, 2422, 2423, 2425, 2426, 2427, 2429, + 2430, 2433, 2446, 2447, 2448, 2449, 2456, 2457, 2460, 2460, 2468, 2469, 2470, 2473, 2475, 2476, + 2480, 2479, 2496, 2520, 2492, 2531, 2531, 2534, 2535, 2538, 2539, 2542, 2543, 2549, 2550, 2550, + 2553, 2554, 2554, 2556, 2558, 2562, 2564, 2562, 2588, 2589, 2592, 2592, 2594, 2594, 2596, 2596, + 2601, 2602, 2602, 2610, 2613, 2683, 2684, 2686, 2687, 2687, 2690, 2693, 2694, 2698, 2710, 2709, + 2731, 2733, 2733, 2754, 2754, 2756, 2760, 2761, 2762, 2761, 2767, 2769, 2770, 2771, 2772, 2773, + 2774, 2777, 2778, 2782, 2783, 2787, 2788, 2791, 2792, 2796, 2797, 2798, 2799, 2802, 2803, 2806, + 2806, 2809, 2810, 2813, 2813, 2817, 2818, 2818, 2825, 2826, 2829, 2830, 2831, 2832, 2833, 2836, + 2838, 2840, 2844, 2846, 2848, 2850, 2852, 2854, 2856, 2856, 2861, 2864, 2867, 2870, 2870, 2878, + 2878, 2887, 2888, 2889, 2890, 2891, 2892, 2893, 2894, 2895, 2902, 2903, 2904, 2905, 2906, 2907, + 2913, 2914, 2917, 2918, 2920, 2921, 2924, 2925, 2928, 2929, 2930, 2931, 2934, 2935, 2936, 2937, + 2938, 2942, 2943, 2944, 2947, 2948, 2951, 2952, 2960, 2963, 2963, 2965, 2965, 2969, 2970, 2972, + 2976, 2977, 2979, 2979, 2982, 2984, 2988, 2991, 2991, 2993, 2993, 2997, 3000, 3000, 3002, 3002, + 3006, 3007, 3009, 3011, 3013, 3015, 3017, 3021, 3022, 3025, 3026, 3027, 3028, 3029, 3030, 3031, + 3032, 3033, 3036, 3037, 3038, 3039, 3040, 3041, 3042, 3043, 3044, 3045, 3046, 3047, 3048, 3049, + 3050, 3070, 3071, 3072, 3073, 3076, 3080, 3084, 3084, 3088, 3089, 3104, 3105, 3130, 3130, 3134, + 3134, 3138, 3138, 3142, 3142, 3146, 3146, 3150, 3150, 3153, 3154, 3157, 3161, 3162, 3165, 3168, + 3169, 3170, 3171, 3174, 3174, 3178, 3179, 3182, 3183, 3186, 3187, 3194, 3195, 3196, 3197, 3198, + 3199, 3200, 3201, 3202, 3203, 3204, 3205, 3208, 3209, 3210, 3211, 3212, 3213, 3214, 3215, 3216, 3217, 3218, 3219, 3220, 3221, 3222, 3223, 3224, 3225, 3226, 3227, 3228, 3229, 3230, 3231, 3232, - 3233, 3234, 3235, 3236, 3237, 3238, 3239, 3240, 3243, 3244, 3245, 3246, 3247, 3248, 3249, 3250, + 3233, 3234, 3235, 3236, 3237, 3238, 3239, 3240, 3241, 3244, 3245, 3246, 3247, 3248, 3249, 3250, 3251, 3252, 3253, 3254, 3255, 3256, 3257, 3258, 3259, 3260, 3261, 3262, 3263, 3264, 3265, 3266, - 3267, 3268, 3269, 3270, 3271, 3272, 3275, 3276, 3277, 3278, 3279, 3280, 3281, 3282, 3283, 3290, - 3291, 3294, 3295, 3296, 3297, 3297, 3298, 3301, 3302, 3305, 3306, 3307, 3308, 3344, 3344, 3345, - 3346, 3347, 3348, 3350, 3351, 3354, 3355, 3356, 3357, 3360, 3361, 3362, 3365, 3366, 3368, 3369, - 3371, 3372, 3375, 3376, 3379, 3380, 3381, 3385, 3384, 3398, 3399, 3402, 3402, 3404, 3404, 3408, - 3408, 3410, 3410, 3412, 3412, 3416, 3416, 3421, 3422, 3424, 3425, 3428, 3429, 3432, 3433, 3436, - 3437, 3438, 3439, 3440, 3441, 3442, 3443, 3443, 3443, 3443, 3443, 3444, 3445, 3446, 3447, 3448, - 3451, 3454, 3455, 3458, 3461, 3461, 3461 }; + 3267, 3268, 3269, 3270, 3271, 3272, 3273, 3276, 3277, 3278, 3279, 3280, 3281, 3282, 3283, 3284, + 3291, 3292, 3295, 3296, 3297, 3298, 3298, 3299, 3302, 3303, 3306, 3307, 3308, 3309, 3345, 3345, + 3346, 3347, 3348, 3349, 3351, 3352, 3355, 3356, 3357, 3358, 3361, 3362, 3363, 3366, 3367, 3369, + 3370, 3372, 3373, 3376, 3377, 3380, 3381, 3382, 3386, 3385, 3399, 3400, 3403, 3403, 3405, 3405, + 3409, 3409, 3411, 3411, 3413, 3413, 3417, 3417, 3422, 3423, 3425, 3426, 3429, 3430, 3433, 3434, + 3437, 3438, 3439, 3440, 3441, 3442, 3443, 3444, 3444, 3444, 3444, 3444, 3445, 3446, 3447, 3448, + 3449, 3452, 3455, 3456, 3459, 3462, 3462, 3462 }; #endif #if YYDEBUG || YYERROR_VERBOSE || 0 @@ -2110,582 +2110,582 @@ static const char* const yytname[] = { "$end", "error", "$undefined", "ID", "VTK "ignored_left_parenthesis", YY_NULLPTR }; #endif -#define YYPACT_NINF -852 -#define YYTABLE_NINF -626 +#define YYPACT_NINF -808 +#define YYTABLE_NINF -627 /* YYPACT[STATE-NUM] -- Index in YYTABLE of the portion describing STATE-NUM. */ -static const short yypact[] = { -852, 71, 158, -852, -852, 5451, -852, 185, 273, 379, 473, 476, 520, - 8, 46, 137, -852, -852, -852, 383, -852, -852, -852, -852, -852, -852, -852, -852, -852, 79, -852, - 3565, -852, -852, 6155, 469, 1316, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, - -852, -852, -852, -852, -852, -852, -852, 5, -852, -852, -852, -852, -852, -852, 5861, -852, 60, - 60, 60, 60, -852, 30, 6155, -852, 129, -852, 148, 698, 1922, 173, 1606, 231, 257, -852, 175, 5959, - -852, -852, -852, -852, 164, 20, -852, -852, -852, -852, -852, 306, -852, -852, 244, 3928, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, - -852, -852, -852, 25, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, 82, 1606, 35, 127, 142, 170, - 178, 180, 351, -852, -852, -852, -852, -852, 611, 173, 173, 6155, 164, -852, -852, -852, -852, - -852, -852, -852, 313, 35, 127, 142, 170, 178, 180, -852, -852, -852, 1606, 1606, 326, 330, -852, - 698, 1606, 173, 173, 6375, 345, 5412, -852, 6375, -852, 1309, 323, 1606, -852, -852, -852, -852, - -852, -852, 5861, -852, -852, 6057, 164, 352, -852, -852, -852, -852, -852, -852, -852, -852, - -852, 6155, -852, -852, -852, -852, -852, -852, 73, 344, 173, 173, 173, -852, -852, -852, -852, - 175, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, 698, -852, - -852, -852, -852, -852, -852, 1617, -852, 194, 56, -852, -852, -852, -852, -852, -852, -852, -852, - 131, -852, -852, -852, 107, -852, -852, -852, 1992, 2113, -852, -852, 340, -852, 2234, 3081, 2355, - -852, -852, -852, -852, -852, -852, 6459, 5800, 6459, 1489, -852, -852, -852, -852, -852, -852, - 1675, -852, 2476, 664, 367, -852, 381, -852, 385, -852, -852, -852, 5259, 698, -852, -852, 391, - -852, 164, -852, -852, -852, -852, -852, -852, 67, -852, 1787, 726, 173, 173, 306, 392, 1140, - -852, -852, -852, 353, -852, 1606, 6057, 1617, 1606, 398, 2597, 405, 765, 758, -852, -852, -852, - 82, -852, -852, -852, -852, -852, 6375, 5800, 6375, 1489, -852, -852, -852, -852, 412, -852, 447, - -852, 5331, -852, 447, 403, -852, 698, 242, -852, -852, -852, 414, 416, 1675, -852, 413, 164, - -852, -852, -852, -852, -852, -852, 5839, 1559, 415, 218, 435, -852, 758, 439, 3202, -852, -852, - 438, -852, -852, -852, -852, 49, -852, 6253, 100, 508, -852, -852, -852, -852, -852, -852, -852, - -852, -852, 451, -852, 164, 93, 474, 208, 6459, 6459, 275, 80, -852, -852, -852, -852, 478, 173, - -852, -852, -852, 306, 581, 475, 479, 45, -852, -852, 481, -852, 482, -852, -852, -852, -852, - -852, -852, 485, -852, -852, 342, 1261, -852, -852, 488, -852, -852, 173, 173, 1787, -852, -852, - -852, -852, -852, -852, -852, 219, -852, -852, 6155, 494, -852, -852, 698, 491, -852, 193, -852, - -852, 492, 516, -852, 173, -852, -852, -852, 405, 4654, 501, 123, 505, 353, 5839, -852, 412, -852, - -852, -852, -852, 4, -852, 500, -852, -852, -852, 498, 232, -852, -852, -852, -852, -852, 4896, - -852, -852, 1633, -852, -852, 306, 412, 519, -852, 514, 435, 293, 173, -852, 527, 82, -852, -852, - -852, -852, -852, 1606, 1606, 1606, -852, 173, 173, 6155, 164, 20, -852, -852, -852, -852, 164, - 100, -852, 4049, 4170, 4291, -852, 532, -852, -852, -852, 538, 539, -852, 20, -852, 536, -852, - 540, 6155, -852, 534, 535, -852, -852, -852, -852, -852, -852, -852, -852, -852, 543, -852, -852, - -852, 432, 544, -852, 616, 574, -852, -852, -852, -852, 1140, 554, -852, -852, 397, 1606, 574, - 574, 2718, -852, -852, 555, -852, -852, -852, 657, 306, 557, -852, -852, -852, -852, -852, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, - -852, -852, -852, 565, -852, -852, -852, 73, -852, -852, 498, -852, 551, -852, 566, 20, -852, - 4775, -852, 4896, -852, -852, -852, -852, 400, -852, 169, -852, -852, -852, -852, 758, -852, -852, - -852, 340, -852, -852, -852, -852, -852, 1675, -852, -852, -852, -852, -852, 164, -852, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, 405, -852, 164, -852, - -852, 5550, -852, 1606, -852, -852, -852, 1606, -852, 1261, -852, -852, -852, -852, 573, -852, - -852, -852, -852, -852, 447, 593, 6155, -852, -852, 352, -852, -852, -852, -852, -852, -852, 405, - 567, -852, -852, -852, -852, -852, -852, 405, -852, 5138, -852, 3686, -852, -852, -852, -852, - -852, -852, -852, -852, -852, 307, -852, 579, 56, 5839, 579, -852, 570, 583, -852, 89, 1559, -852, - -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, -852, 5649, -852, 60, -852, -852, - -852, 585, 344, 698, 1432, 164, 574, 1261, 574, 544, 4896, 3807, -852, 642, -852, -852, -852, 164, - -852, 4412, 4654, 4533, 627, 588, 586, 4896, 591, -852, -852, -852, -852, -852, 4896, 405, 5839, - -852, -852, -852, -852, -852, 599, 164, -852, 579, -852, -852, 1861, -852, -852, -852, -852, 5649, - -852, -852, 344, 5747, -852, -852, -852, -852, 698, 1617, -852, -852, -852, 4896, 94, -852, -852, - 605, 598, -852, -852, -852, -852, -852, -852, -852, 4896, -852, 4896, 603, 5017, -852, -852, -852, - -852, -852, -852, -852, 1815, 60, 5747, 574, 5747, 612, -852, -852, 613, 194, 253, -852, -852, - 6351, 74, -852, -852, -852, 5017, -852, 312, 346, 1700, -852, -852, 1815, -852, -852, 1617, -852, - 615, -852, -852, -852, -852, -852, 6351, -852, -852, 20, -852, 306, -852, -852, -852, -852, -852, - 94, 126, -852, -852, 249, -852, 1700, -852, 5610, -852, 2839, -852, -852, -852, 346, -852, -852, - 2960, 3323, 334, 75, 5610, 296, -852, -852, -852, 5839, -852, -852, -852, -852, 92, 334, 5839, - 3444, -852, -852 }; +static const short yypact[] = { -808, 98, 145, -808, -808, 1485, -808, 180, 263, 333, 382, 477, 505, + 100, 150, 225, -808, -808, -808, 312, -808, -808, -808, -808, -808, -808, -808, 66, -808, 123, + -808, 3527, -808, -808, 6169, 546, 1274, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, -808, -808, 52, -808, -808, -808, -808, -808, -808, 5875, + -808, 202, 202, 202, 202, -808, 82, 6169, -808, 72, -808, 80, 1266, 1718, 116, 1348, 195, 281, + -808, 120, 5973, -808, -808, -808, -808, 127, 196, -808, -808, -808, -808, -808, 216, -808, -808, + 705, 168, 3890, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, -808, -1, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, 85, + 1348, -13, 48, 176, 208, 236, 239, -808, 279, -808, -808, -808, -808, -808, 1621, 116, 116, 6169, + 127, -808, -808, -808, -808, -808, -808, -808, 271, -13, 48, 176, 208, 236, 239, -808, -808, -808, + 1348, 1348, 256, 292, -808, 1266, 1348, 116, 116, 6389, 298, 5597, -808, 6389, -808, 1120, 301, + 1348, -808, -808, -808, -808, -808, -808, 5875, -808, -808, 6071, 127, 296, -808, -808, -808, + -808, -808, -808, -808, -808, -808, 6169, -808, -808, -808, -808, -808, -808, 68, 323, 116, 116, + 116, -808, -808, -808, -808, 120, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, 1266, -808, -808, -808, -808, -808, -808, 1630, -808, 331, 81, -808, -808, -808, + -808, -808, -808, -808, -808, 350, -808, -808, -808, 99, -808, 344, -808, -808, 1954, 2075, -808, + -808, 219, -808, 2196, 3043, 2317, -808, -808, -808, -808, -808, -808, 6473, 5793, 6473, 1600, + -808, -808, -808, -808, -808, -808, 1151, -808, 2438, 826, 352, -808, 346, -808, 363, -808, -808, + -808, 5221, 1266, -808, -808, 367, -808, 127, -808, -808, -808, -808, -808, -808, 58, -808, 1408, + 659, 116, 116, 216, 375, 1537, -808, -808, -808, 368, -808, 1348, 6071, 1630, 1348, 396, 2559, + 376, 632, 705, -808, -808, -808, 85, -808, -808, -808, -808, -808, 6389, 5793, 6389, 1600, -808, + -808, -808, -808, 189, -808, 335, -808, 1739, -808, 335, 402, -808, 1266, 223, -808, -808, -808, + 412, 432, 1151, -808, 452, 127, -808, -808, -808, -808, -808, -808, 5951, 733, 467, 308, 491, + -808, 705, -808, 437, 3164, -808, -808, 471, -808, -808, -808, -808, 29, -808, 6267, 191, 555, + -808, -808, -808, -808, -808, -808, -808, -808, -808, 498, -808, 127, 97, 501, 373, 6473, 6473, + 357, 416, -808, -808, -808, -808, 506, 116, -808, -808, -808, 216, 598, 497, 502, 34, -808, -808, + 503, -808, 508, -808, -808, -808, -808, -808, -808, 509, -808, -808, 198, 1416, -808, -808, 504, + -808, -808, 116, 116, 1408, -808, -808, -808, -808, -808, -808, -808, 390, -808, -808, 6169, 516, + -808, -808, 1266, 512, -808, 146, -808, -808, 513, 540, -808, 116, -808, -808, -808, 376, 4616, + 523, 74, 524, 368, 5951, -808, 189, -808, -808, -808, -808, 32, -808, 521, -808, -808, -808, 520, + 417, -808, -808, -808, -808, -808, 4858, -808, -808, 1674, -808, -808, 216, 189, 527, -808, 530, + 491, 345, 116, -808, 550, 85, 541, -808, -808, -808, -808, -808, 1348, 1348, 1348, -808, 116, 116, + 6169, 127, 196, -808, -808, -808, -808, 127, 191, -808, 4011, 4132, 4253, -808, 537, -808, -808, + -808, 544, 549, -808, 196, -808, 552, -808, 548, 6169, -808, 543, 557, -808, -808, -808, -808, + -808, -808, -808, -808, -808, 553, -808, -808, -808, 539, 554, -808, 634, 589, -808, -808, -808, + -808, 1537, 569, -808, -808, 486, 1348, 589, 589, 2680, -808, -808, 570, -808, -808, -808, 672, + 216, 574, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, 576, -808, -808, -808, 68, -808, + -808, 520, -808, 372, -808, 579, 196, -808, 4737, -808, 4858, -808, -808, -808, -808, 485, -808, + 434, -808, -808, -808, -808, 705, -808, -808, -808, -808, 219, -808, -808, -808, -808, -808, 1151, + -808, -808, -808, -808, -808, 127, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, -808, -808, 376, -808, 127, -808, -808, 5341, -808, 1348, -808, -808, -808, 1348, + -808, 1416, -808, -808, -808, -808, 582, -808, -808, -808, -808, -808, 335, 604, 6169, -808, -808, + 296, -808, -808, -808, -808, -808, -808, 376, 577, -808, -808, -808, -808, -808, -808, 376, -808, + 5100, -808, 3648, -808, -808, -808, -808, -808, -808, -808, -808, -808, 448, -808, 584, 81, 5951, + 584, -808, 583, 592, -808, 212, 733, -808, -808, -808, -808, -808, -808, -808, -808, -808, -808, + -808, -808, 5440, -808, 202, -808, -808, -808, 596, 323, 1266, 5538, 127, 589, 1416, 589, 554, + 4858, 3769, -808, 653, -808, -808, -808, 127, -808, 4374, 4616, 4495, 635, 594, 588, 4858, 606, + -808, -808, -808, -808, -808, 4858, 376, 5951, -808, -808, -808, -808, -808, 607, 127, -808, 584, + -808, -808, 5636, -808, -808, -808, -808, 5440, -808, -808, 323, 5734, -808, -808, -808, -808, + 1266, 1630, -808, -808, -808, 4858, 96, -808, -808, 600, 605, -808, -808, -808, -808, -808, -808, + -808, 4858, -808, 4858, 613, 4979, -808, -808, -808, -808, -808, -808, -808, 1441, 202, 5734, 589, + 5734, 621, -808, -808, 622, 331, 253, -808, -808, 6365, 61, -808, -808, -808, 4979, -808, 470, + 487, 5401, -808, -808, 1441, -808, -808, 1630, -808, 624, -808, -808, -808, -808, -808, 6365, + -808, -808, 196, -808, 216, -808, -808, -808, -808, -808, 96, 117, -808, -808, 130, -808, 5401, + -808, 5787, -808, 2801, -808, -808, -808, 487, -808, -808, 2922, 3285, 428, 60, 5787, 144, -808, + -808, -808, 5951, -808, -808, -808, -808, 67, 428, 5951, 3406, -808, -808 }; /* YYDEFACT[STATE-NUM] -- Default reduction number in state STATE-NUM. Performed when YYTABLE does not specify something else to do. Zero means the default is an error. */ -static const unsigned short yydefact[] = { 3, 0, 4, 1, 470, 0, 482, 437, 438, 439, 434, 435, 436, - 441, 442, 440, 52, 51, 53, 113, 397, 398, 389, 392, 393, 395, 396, 394, 388, 390, 217, 0, 360, - 411, 0, 0, 0, 357, 443, 444, 445, 446, 447, 452, 453, 454, 455, 448, 449, 450, 451, 456, 457, 22, - 355, 5, 19, 20, 13, 11, 12, 9, 36, 17, 377, 43, 480, 10, 16, 377, 0, 480, 14, 134, 7, 6, 8, 0, 18, - 0, 0, 0, 0, 206, 0, 0, 15, 0, 337, 470, 0, 0, 0, 0, 470, 410, 339, 356, 0, 470, 385, 386, 387, - 178, 292, 402, 406, 409, 470, 470, 471, 115, 114, 391, 0, 437, 438, 439, 434, 435, 436, 671, 672, - 582, 577, 578, 579, 576, 580, 581, 583, 584, 441, 442, 440, 641, 549, 548, 550, 569, 552, 554, - 553, 555, 556, 557, 558, 561, 562, 560, 559, 565, 568, 551, 570, 571, 563, 547, 546, 567, 566, - 522, 523, 564, 574, 573, 572, 575, 524, 525, 526, 655, 527, 528, 529, 535, 536, 530, 531, 532, - 533, 534, 537, 538, 539, 540, 541, 542, 543, 544, 545, 653, 652, 665, 641, 659, 656, 660, 670, - 163, 519, 641, 518, 513, 658, 512, 514, 515, 516, 517, 520, 521, 657, 664, 663, 654, 661, 662, - 643, 649, 651, 650, 641, 0, 0, 437, 438, 439, 434, 435, 436, 390, 377, 480, 377, 480, 470, 0, 470, - 410, 0, 178, 371, 373, 372, 376, 375, 374, 641, 33, 364, 362, 363, 367, 366, 365, 370, 369, 368, - 0, 0, 0, 472, 338, 0, 0, 340, 341, 292, 0, 50, 482, 292, 109, 116, 0, 0, 26, 37, 23, 480, 25, 27, - 0, 24, 28, 0, 178, 256, 245, 641, 188, 244, 190, 191, 189, 209, 480, 0, 212, 21, 414, 353, 196, - 194, 224, 344, 0, 340, 341, 342, 58, 343, 57, 0, 347, 345, 346, 348, 413, 349, 358, 377, 480, 377, - 480, 135, 207, 0, 470, 404, 383, 300, 302, 179, 0, 288, 273, 178, 474, 474, 474, 401, 293, 458, - 459, 468, 460, 377, 433, 432, 492, 483, 3, 643, 0, 0, 628, 627, 169, 161, 0, 0, 0, 635, 637, 633, - 361, 470, 391, 292, 50, 292, 116, 344, 377, 377, 150, 146, 142, 0, 145, 0, 0, 0, 153, 0, 151, 0, - 482, 155, 154, 0, 0, 382, 381, 0, 288, 178, 470, 379, 380, 61, 39, 48, 407, 470, 0, 0, 58, 0, 481, - 0, 121, 105, 117, 112, 470, 472, 0, 0, 0, 0, 0, 0, 263, 0, 0, 228, 227, 476, 226, 254, 350, 351, - 352, 616, 292, 50, 292, 116, 197, 195, 384, 377, 466, 208, 220, 472, 0, 192, 220, 326, 472, 0, 0, - 275, 285, 274, 0, 0, 0, 316, 0, 178, 463, 482, 462, 464, 461, 469, 403, 0, 0, 492, 486, 489, 0, 4, - 0, 646, 648, 0, 642, 645, 647, 666, 0, 166, 0, 0, 0, 470, 667, 30, 644, 669, 605, 605, 605, 412, - 0, 142, 178, 407, 0, 470, 292, 292, 0, 326, 472, 340, 341, 32, 0, 0, 3, 158, 159, 473, 0, 522, - 523, 0, 507, 506, 0, 504, 0, 505, 216, 511, 157, 156, 41, 287, 291, 378, 62, 0, 60, 38, 47, 56, - 470, 58, 0, 0, 107, 364, 362, 363, 367, 366, 365, 0, 119, 472, 0, 111, 408, 470, 0, 257, 258, 0, - 641, 243, 0, 470, 407, 0, 232, 482, 225, 263, 0, 0, 407, 0, 470, 405, 399, 467, 301, 222, 223, - 213, 229, 221, 0, 218, 297, 327, 0, 320, 198, 193, 472, 284, 289, 0, 639, 278, 0, 298, 317, 475, - 466, 0, 152, 0, 485, 492, 498, 356, 494, 496, 31, 29, 668, 167, 164, 0, 0, 0, 428, 427, 426, 0, - 178, 292, 421, 425, 180, 181, 178, 0, 162, 0, 0, 0, 137, 141, 144, 139, 111, 0, 0, 136, 292, 147, - 320, 35, 4, 0, 510, 0, 0, 509, 508, 500, 501, 65, 66, 67, 44, 470, 0, 101, 102, 103, 99, 49, 92, - 97, 178, 45, 54, 470, 110, 121, 122, 118, 104, 339, 0, 178, 178, 0, 210, 269, 264, 265, 270, 354, - 251, 477, 0, 631, 594, 623, 599, 624, 625, 629, 600, 604, 603, 598, 601, 602, 621, 593, 622, 617, - 620, 359, 595, 596, 597, 42, 40, 108, 111, 400, 231, 230, 224, 214, 332, 329, 330, 0, 249, 0, 292, - 592, 589, 590, 276, 585, 587, 588, 618, 0, 281, 303, 465, 487, 484, 491, 0, 495, 493, 497, 169, - 470, 429, 430, 431, 423, 318, 170, 474, 420, 377, 173, 178, 610, 612, 613, 636, 608, 609, 607, - 611, 606, 638, 634, 138, 140, 143, 263, 34, 178, 502, 503, 0, 64, 0, 100, 470, 98, 0, 94, 0, 55, - 120, 123, 643, 0, 127, 259, 261, 260, 247, 220, 266, 0, 234, 233, 256, 255, 605, 616, 605, 106, - 476, 263, 335, 331, 323, 324, 325, 322, 321, 263, 290, 0, 586, 0, 282, 280, 304, 299, 307, 499, - 168, 165, 377, 303, 319, 182, 178, 422, 182, 176, 0, 0, 470, 390, 0, 81, 79, 70, 76, 63, 78, 72, - 71, 75, 73, 68, 69, 0, 77, 0, 203, 204, 74, 0, 337, 0, 0, 178, 178, 0, 178, 46, 0, 126, 125, 246, - 211, 268, 470, 178, 252, 0, 0, 0, 239, 0, 0, 0, 0, 591, 615, 640, 614, 619, 0, 263, 424, 294, 184, - 171, 183, 314, 0, 178, 174, 182, 148, 160, 0, 82, 84, 87, 85, 0, 83, 86, 0, 0, 199, 80, 472, 205, - 0, 0, 95, 93, 96, 124, 0, 267, 271, 235, 0, 626, 630, 241, 232, 240, 215, 478, 336, 250, 283, 0, - 0, 295, 315, 177, 308, 90, 480, 88, 0, 0, 0, 178, 0, 0, 472, 202, 0, 273, 0, 253, 632, 0, 235, - 333, 482, 305, 185, 186, 303, 149, 0, 480, 89, 0, 91, 480, 0, 200, 0, 641, 272, 238, 236, 237, 0, - 416, 242, 292, 219, 479, 308, 187, 296, 310, 309, 0, 313, 641, 643, 407, 130, 0, 480, 0, 201, 0, - 418, 377, 415, 476, 311, 312, 0, 0, 0, 59, 0, 407, 131, 248, 377, 417, 306, 643, 133, 128, 59, 0, - 419, 0, 129, 132 }; +static const unsigned short yydefact[] = { 3, 0, 4, 1, 471, 0, 483, 438, 439, 440, 435, 436, 437, + 442, 443, 441, 53, 52, 54, 114, 398, 399, 390, 393, 394, 396, 397, 395, 389, 391, 218, 0, 361, + 412, 0, 0, 0, 358, 444, 445, 446, 447, 448, 453, 454, 455, 456, 449, 450, 451, 452, 457, 458, 22, + 356, 5, 19, 20, 13, 11, 12, 9, 37, 17, 378, 44, 481, 10, 16, 378, 0, 481, 14, 135, 7, 6, 8, 0, 18, + 0, 0, 0, 0, 207, 0, 0, 15, 0, 338, 471, 0, 0, 0, 0, 471, 411, 340, 357, 0, 471, 386, 387, 388, + 179, 293, 403, 407, 410, 471, 471, 472, 116, 115, 0, 392, 0, 438, 439, 440, 435, 436, 437, 672, + 673, 583, 578, 579, 580, 577, 581, 582, 584, 585, 442, 443, 441, 642, 550, 549, 551, 570, 553, + 555, 554, 556, 557, 558, 559, 562, 563, 561, 560, 566, 569, 552, 571, 572, 564, 548, 547, 568, + 567, 523, 524, 565, 575, 574, 573, 576, 525, 526, 527, 656, 528, 529, 530, 536, 537, 531, 532, + 533, 534, 535, 538, 539, 540, 541, 542, 543, 544, 545, 546, 654, 653, 666, 642, 660, 657, 661, + 671, 164, 520, 642, 519, 514, 659, 513, 515, 516, 517, 518, 521, 522, 658, 665, 664, 655, 662, + 663, 644, 650, 652, 651, 642, 0, 0, 438, 439, 440, 435, 436, 437, 395, 391, 378, 481, 378, 481, + 471, 0, 471, 411, 0, 179, 372, 374, 373, 377, 376, 375, 642, 33, 365, 363, 364, 368, 367, 366, + 371, 370, 369, 0, 0, 0, 473, 339, 0, 0, 341, 342, 293, 0, 51, 483, 293, 110, 117, 0, 0, 26, 38, + 23, 481, 25, 27, 0, 24, 28, 0, 179, 257, 246, 642, 189, 245, 191, 192, 190, 210, 481, 0, 213, 21, + 415, 354, 197, 195, 225, 345, 0, 341, 342, 343, 59, 344, 58, 0, 348, 346, 347, 349, 414, 350, 359, + 378, 481, 378, 481, 136, 208, 0, 471, 405, 384, 301, 303, 180, 0, 289, 274, 179, 475, 475, 475, + 402, 294, 459, 460, 469, 461, 378, 434, 433, 493, 484, 0, 3, 644, 0, 0, 629, 628, 170, 162, 0, 0, + 0, 636, 638, 634, 362, 471, 392, 293, 51, 293, 117, 345, 378, 378, 151, 147, 143, 0, 146, 0, 0, 0, + 154, 0, 152, 0, 483, 156, 155, 0, 0, 383, 382, 0, 289, 179, 471, 380, 381, 62, 40, 49, 408, 471, + 0, 0, 59, 0, 482, 0, 122, 106, 118, 113, 471, 473, 0, 0, 0, 0, 0, 0, 264, 0, 0, 229, 228, 477, + 227, 255, 351, 352, 353, 617, 293, 51, 293, 117, 198, 196, 385, 378, 467, 209, 221, 473, 0, 193, + 221, 327, 473, 0, 0, 276, 286, 275, 0, 0, 0, 317, 0, 179, 464, 483, 463, 465, 462, 470, 404, 0, 0, + 493, 487, 490, 0, 3, 4, 0, 647, 649, 0, 643, 646, 648, 667, 0, 167, 0, 0, 0, 471, 668, 30, 645, + 670, 606, 606, 606, 413, 0, 143, 179, 408, 0, 471, 293, 293, 0, 327, 473, 341, 342, 32, 0, 0, 3, + 159, 160, 474, 0, 523, 524, 0, 508, 507, 0, 505, 0, 506, 217, 512, 158, 157, 42, 288, 292, 379, + 63, 0, 61, 39, 48, 57, 471, 59, 0, 0, 108, 365, 363, 364, 368, 367, 366, 0, 120, 473, 0, 112, 409, + 471, 0, 258, 259, 0, 642, 244, 0, 471, 408, 0, 233, 483, 226, 264, 0, 0, 408, 0, 471, 406, 400, + 468, 302, 223, 224, 214, 230, 222, 0, 219, 298, 328, 0, 321, 199, 194, 473, 285, 290, 0, 640, 279, + 0, 299, 318, 476, 467, 0, 153, 0, 486, 493, 499, 357, 495, 497, 4, 31, 29, 669, 168, 165, 0, 0, 0, + 429, 428, 427, 0, 179, 293, 422, 426, 181, 182, 179, 0, 163, 0, 0, 0, 138, 142, 145, 140, 112, 0, + 0, 137, 293, 148, 321, 36, 4, 0, 511, 0, 0, 510, 509, 501, 502, 66, 67, 68, 45, 471, 0, 102, 103, + 104, 100, 50, 93, 98, 179, 46, 55, 471, 111, 122, 123, 119, 105, 340, 0, 179, 179, 0, 211, 270, + 265, 266, 271, 355, 252, 478, 0, 632, 595, 624, 600, 625, 626, 630, 601, 605, 604, 599, 602, 603, + 622, 594, 623, 618, 621, 360, 596, 597, 598, 43, 41, 109, 112, 401, 232, 231, 225, 215, 333, 330, + 331, 0, 250, 0, 293, 593, 590, 591, 277, 586, 588, 589, 619, 0, 282, 304, 466, 488, 485, 492, 0, + 496, 494, 498, 35, 170, 471, 430, 431, 432, 424, 319, 171, 475, 421, 378, 174, 179, 611, 613, 614, + 637, 609, 610, 608, 612, 607, 639, 635, 139, 141, 144, 264, 34, 179, 503, 504, 0, 65, 0, 101, 471, + 99, 0, 95, 0, 56, 121, 124, 644, 0, 128, 260, 262, 261, 248, 221, 267, 0, 235, 234, 257, 256, 606, + 617, 606, 107, 477, 264, 336, 332, 324, 325, 326, 323, 322, 264, 291, 0, 587, 0, 283, 281, 305, + 300, 308, 500, 169, 166, 378, 304, 320, 183, 179, 423, 183, 177, 0, 0, 471, 391, 0, 82, 80, 71, + 77, 64, 79, 73, 72, 76, 74, 69, 70, 0, 78, 0, 204, 205, 75, 0, 338, 0, 0, 179, 179, 0, 179, 47, 0, + 127, 126, 247, 212, 269, 471, 179, 253, 0, 0, 0, 240, 0, 0, 0, 0, 592, 616, 641, 615, 620, 0, 264, + 425, 295, 185, 172, 184, 315, 0, 179, 175, 183, 149, 161, 0, 83, 85, 88, 86, 0, 84, 87, 0, 0, 200, + 81, 473, 206, 0, 0, 96, 94, 97, 125, 0, 268, 272, 236, 0, 627, 631, 242, 233, 241, 216, 479, 337, + 251, 284, 0, 0, 296, 316, 178, 309, 91, 481, 89, 0, 0, 0, 179, 0, 0, 473, 203, 0, 274, 0, 254, + 633, 0, 236, 334, 483, 306, 186, 187, 304, 150, 0, 481, 90, 0, 92, 481, 0, 201, 0, 642, 273, 239, + 237, 238, 0, 417, 243, 293, 220, 480, 309, 188, 297, 311, 310, 0, 314, 642, 644, 408, 131, 0, 481, + 0, 202, 0, 419, 378, 416, 477, 312, 313, 0, 0, 0, 60, 0, 408, 132, 249, 378, 418, 307, 644, 134, + 129, 60, 0, 420, 0, 130, 133 }; /* YYPGOTO[NTERM-NUM]. */ -static const short yypgoto[] = { -852, -852, -294, -852, -852, 709, -64, -852, -852, -852, -852, - -736, -74, 9, -25, -852, -852, -852, -852, 152, -339, -67, -694, -852, -852, -852, -852, -61, -54, - -76, -156, -852, -852, 54, -51, -47, -24, -852, -852, 133, -360, -852, -852, 55, -852, -852, -852, - -218, -520, -45, -96, -311, 243, 98, -852, -852, -852, -852, 247, -36, 285, -852, 10, -852, 11, - -852, -852, -852, -852, -852, 18, -852, -852, -852, -852, -852, -852, 362, 121, -764, -852, -852, - -852, 762, -852, -852, -852, -12, -139, 34, -68, -852, -852, -208, -392, -852, -852, -251, -237, - -442, -414, -852, -852, 51, -852, -852, -164, -852, -193, -852, -852, -852, -62, -852, -852, -852, - -852, 16, -852, -852, -852, -852, -23, -852, 101, -545, -852, -852, -852, -94, -852, -852, -181, - -852, -852, -852, -852, -852, -852, 12, 396, -217, 406, -852, 58, -98, -577, -852, -197, -852, - -579, -852, -799, -852, -852, -206, -852, -852, -852, -357, -852, -852, -383, -852, -852, 70, - -852, -852, -852, 1128, 912, 1116, 77, -852, -852, 427, 862, -5, -852, 33, -852, 57, -27, -20, - -852, 2, 786, -852, -852, -405, -852, -1, 245, -852, -852, -52, -797, -852, -852, -852, -852, - -852, -852, -852, -852, -852, -852, 321, 206, 174, -317, 465, -852, 470, -852, 209, -852, 878, - -852, -359, -852, -299, -852, -774, -852, -852, -852, -70, -852, -260, -852, -852, -852, 350, 205, - -852, -852, -852, -852, -852, 163, 177, 149, -591, -693, -852, -256, -3, -448, -852, -7, -852, 13, - -852, -851, -852, -542, -852, -461, -852, -852, -852, -189, -852, -852, -852, 369, -852, -147, - -349, -852, -334, 37, -503, -852, -541, -852 }; +static const short yypgoto[] = { -808, -808, -303, -808, -808, 718, -69, -808, -808, -808, -808, + -740, -76, 0, -25, -808, -808, -808, -808, 334, -291, -48, -736, -808, -808, -808, -808, -67, -63, + -57, -150, -808, -808, 69, -47, -45, -30, -808, -808, 23, -371, -808, -808, 64, -808, -808, -808, + -211, -691, -37, -95, -327, 255, 106, -808, -808, -808, -808, 258, -32, 291, -808, 10, -808, -3, + -808, -808, -808, -808, -808, 5, -808, -808, -808, -808, -808, -808, 500, 128, -779, -808, -808, + -808, 765, -808, -808, -808, -23, -149, 45, -11, -808, -808, -214, -397, -808, -808, -234, -253, + -439, -420, -808, -808, 39, -808, -808, -176, -808, -204, -808, -808, -808, -74, -808, -808, -808, + -808, -71, -808, -808, -808, -808, -41, -808, 87, -560, -808, -808, -808, -113, -808, -808, -193, + -808, -808, -808, -808, -808, -808, 11, 384, -227, 387, -808, 49, -62, -567, -808, -118, -808, + -523, -808, -807, -808, -808, -215, -808, -808, -808, -356, -808, -808, -374, -808, -808, 62, + -808, -808, -808, 1028, 439, 1072, 71, -808, -808, 107, 709, -5, -808, 33, -808, 200, -9, -38, + -808, 12, 738, -808, -808, -394, -808, 31, 234, -808, -808, 92, -645, -808, -808, -808, -808, + -808, -808, -808, -808, -808, -808, 305, 178, 207, -326, 459, -808, 463, -808, 201, -808, 990, + -808, -416, -808, -318, -808, -786, -808, -808, -808, -49, -808, -263, -808, -808, -808, 338, 203, + -808, -808, -808, -808, -808, 143, 38, 121, -526, -701, -808, -544, -17, -444, -808, -18, -808, + 15, -808, -792, -808, -537, -808, -470, -808, -808, -808, -191, -808, -808, -808, 365, -808, -172, + -346, -808, -353, 57, -514, -808, -504, -808 }; /* YYDEFGOTO[NTERM-NUM]. */ -static const short yydefgoto[] = { -1, 1, 2, 4, 55, 277, 57, 58, 59, 384, 60, 61, 62, 279, 64, 269, - 65, 797, 540, 297, 405, 406, 543, 539, 668, 669, 858, 919, 920, 674, 675, 795, 791, 676, 67, 68, - 69, 413, 70, 280, 416, 559, 556, 557, 881, 281, 802, 960, 1013, 72, 73, 501, 509, 502, 377, 378, - 784, 957, 379, 74, 261, 75, 282, 656, 283, 492, 359, 758, 487, 757, 488, 489, 844, 490, 847, 491, - 914, 763, 637, 908, 909, 953, 979, 284, 79, 80, 81, 923, 868, 869, 83, 425, 808, 84, 446, 447, - 820, 448, 85, 450, 588, 589, 590, 430, 431, 729, 697, 812, 972, 945, 946, 974, 291, 292, 884, 451, - 828, 870, 813, 940, 305, 576, 423, 564, 565, 569, 570, 693, 887, 694, 810, 970, 457, 458, 602, - 459, 460, 746, 903, 285, 336, 396, 455, 737, 397, 398, 764, 981, 337, 748, 338, 445, 836, 904, - 1003, 982, 911, 463, 842, 452, 827, 593, 837, 595, 732, 733, 821, 895, 896, 677, 88, 236, 237, - 427, 91, 92, 93, 266, 436, 267, 223, 96, 97, 268, 399, 298, 99, 100, 101, 102, 584, 876, 104, 348, - 444, 105, 106, 224, 999, 1000, 1020, 1033, 631, 632, 767, 841, 633, 107, 108, 109, 343, 344, 345, - 346, 609, 585, 347, 561, 6, 388, 389, 465, 466, 573, 574, 976, 977, 270, 271, 110, 352, 473, 474, - 475, 476, 477, 755, 617, 618, 531, 710, 711, 712, 741, 742, 830, 743, 714, 640, 777, 778, 902, - 577, 832, 715, 716, 744, 816, 360, 719, 817, 815, 720, 499, 497, 498, 721, 745, 355, 362, 483, - 484, 485, 219, 220, 221, 222 }; +static const short yydefgoto[] = { -1, 1, 2, 4, 55, 279, 57, 58, 59, 387, 60, 61, 62, 281, 64, 271, + 65, 803, 544, 299, 408, 409, 547, 543, 673, 674, 864, 925, 926, 679, 680, 801, 797, 681, 67, 68, + 69, 416, 70, 282, 419, 563, 560, 561, 887, 283, 808, 966, 1019, 72, 73, 505, 513, 506, 380, 381, + 790, 963, 382, 74, 263, 75, 284, 661, 285, 496, 362, 764, 491, 763, 492, 493, 850, 494, 853, 495, + 920, 769, 642, 914, 915, 959, 985, 286, 79, 80, 81, 929, 874, 875, 83, 428, 814, 84, 449, 450, + 826, 451, 85, 453, 592, 593, 594, 433, 434, 734, 702, 818, 978, 951, 952, 980, 293, 294, 890, 454, + 834, 876, 819, 946, 307, 580, 426, 568, 569, 573, 574, 698, 893, 699, 816, 976, 460, 461, 606, + 462, 463, 751, 909, 287, 338, 399, 458, 742, 400, 401, 770, 987, 339, 753, 340, 448, 842, 910, + 1009, 988, 917, 466, 848, 455, 833, 597, 843, 599, 737, 738, 827, 901, 902, 682, 88, 238, 239, + 430, 91, 92, 93, 268, 439, 269, 224, 96, 97, 270, 402, 300, 99, 100, 101, 102, 588, 882, 104, 350, + 447, 105, 106, 225, 1005, 1006, 1026, 1039, 636, 637, 773, 847, 638, 107, 108, 109, 345, 346, 347, + 348, 613, 589, 349, 565, 6, 391, 392, 468, 469, 577, 578, 982, 983, 272, 273, 110, 354, 476, 477, + 478, 479, 480, 760, 621, 622, 535, 715, 716, 717, 746, 747, 836, 748, 719, 645, 783, 784, 908, + 581, 838, 720, 721, 749, 822, 363, 724, 823, 821, 725, 503, 501, 502, 726, 750, 358, 365, 487, + 488, 489, 220, 221, 222, 223 }; /* YYTABLE[YYPACT[STATE-NUM]] -- What to do in state STATE-NUM. If positive, shift that token. If negative, reduce the rule whose number is the opposite. If YYTABLE_NINF, syntax error. */ -static const short yytable[] = { 94, 274, 326, 278, 103, 479, 342, 98, 249, 232, 234, 411, 598, 391, - 63, 76, 77, 86, 293, 294, 295, 464, 303, 510, 310, 689, 623, 392, 495, 238, 327, 699, 504, 241, - 367, 717, 240, 592, 95, 82, 583, 467, 468, 906, 381, 893, 330, 356, 831, 272, 641, 642, 765, 856, - 361, 412, 390, 560, 765, 478, 768, 505, 597, 688, 314, 332, 333, 239, 218, 594, 541, 3, 238, 322, - 324, 363, 287, 811, 541, 286, 238, 727, 90, 913, 299, 308, 311, 571, 357, 591, 113, 364, 365, 238, - 596, 541, 541, 339, 449, 579, 369, 382, 980, 121, 122, 288, 304, 273, 660, -370, 239, 82, 357, - 264, 728, -370, 718, 428, 239, -371, 429, 598, 114, 309, 312, 635, 541, 594, 1004, 520, 340, 239, - 114, 339, 341, 121, 122, 296, 71, 334, 358, 462, 534, 424, -371, 495, 647, -369, 313, 636, 956, - 354, 653, -369, 90, 622, 392, 66, -2, 472, 661, 289, 290, 371, 358, 373, 340, 235, 542, -59, 341, - 597, -59, 332, 333, 328, 542, 998, 971, 726, 217, 958, 1005, 803, 449, 533, 233, 652, 330, 366, - 765, -328, 848, 723, 215, -59, 648, 649, -59, 683, 1019, 198, 121, 122, 583, 214, 608, 765, 216, - 850, 419, -373, 370, -488, 372, 375, 376, 449, 327, -488, 578, 725, 580, 655, 723, -59, -372, 426, - -59, 66, 300, 325, 308, 198, 330, 238, -373, 213, -368, 849, 736, 340, 575, 831, -368, 341, 330, - 334, 1035, -338, 323, -372, 541, 438, -376, 440, 831, 37, 831, 308, 441, 322, -375, 217, -374, - 409, 765, 607, 910, -371, 309, 994, 503, 239, 503, 894, 835, 215, 238, -376, -328, 238, 287, 897, - 321, 420, -364, -375, 214, -374, 936, 216, -364, 238, -371, 194, -277, 309, 456, 541, 198, -279, - 437, 410, 439, 949, 381, 995, 996, 765, -116, 939, 951, 415, 698, 37, 239, 82, 1027, 239, 213, - 713, 681, 308, -488, 682, 449, 313, 471, 351, -488, 239, -340, 765, 1027, 955, 1040, 734, -340, - 735, 545, 37, 393, 600, 442, 1040, 353, 407, 601, 717, 542, -59, 327, 314, -59, 507, 508, -373, - -341, 952, 90, 309, 369, 328, -341, -172, 409, 890, 330, 892, 664, 665, 666, 235, -362, 512, 650, - 1006, 516, 1007, -362, 651, -373, -175, 776, 776, 776, 238, 308, -172, 1008, 299, 233, 1009, 885, - 322, 969, 723, -59, -490, 314, -59, 546, 516, 410, -490, 843, 111, 112, 503, 503, 717, 454, 513, - 835, 238, 410, 383, -328, 835, 690, 409, 572, -328, 582, 239, 309, 387, 313, 756, 942, -152, 199, - 409, 314, 233, 1010, 717, 323, 1011, 547, 410, 401, 20, 21, 667, 401, 402, 407, 308, 616, 432, - 882, 239, -116, -116, 512, 422, 415, 410, 670, 671, 672, -372, 313, 335, 845, 1023, 1024, 517, - 558, 410, 242, 243, 244, 245, 246, 247, 586, 587, -363, 680, 518, 313, 628, 548, -363, 309, -372, - 519, 968, 630, 535, 549, 513, 313, 1031, 328, 563, 194, 567, 801, 638, 407, 217, 217, 833, 1038, - 834, 1031, 217, 217, 217, -262, -328, 407, 603, 307, 215, 215, 1043, 606, 629, 605, 215, 215, 215, - 612, 912, 214, 214, 217, 216, 216, 766, 214, 214, 214, 216, 216, 216, 614, 619, 546, 401, 215, - 401, 968, 495, 264, 621, 275, 643, 503, 238, 532, 214, -376, 308, 216, -375, 213, 213, 823, 824, - 825, 826, 213, 213, 213, 966, 248, 233, 217, -367, 646, 776, -366, 762, 654, -367, 547, -376, - -366, 657, -375, 658, 215, 213, 662, 659, 601, 239, 678, 663, 685, 309, 687, 214, 692, 691, 216, - 722, 380, -374, 313, 724, 730, 991, 731, 754, 401, 532, 401, 250, 251, 252, 253, 254, 255, 686, - -365, 626, 929, 750, 238, 751, -365, 217, -374, 213, 256, 257, 258, 776, 713, 776, 449, 651, 781, - 782, 734, 215, 785, 1012, 401, 787, 788, 790, 421, 793, 238, 794, 214, 302, 786, 216, 334, 800, - 32, 811, 809, 1026, 239, 307, 814, 818, 242, 243, 244, 245, 246, 247, 735, 883, 1028, 886, 1030, - 915, -334, 967, 401, 401, 907, 916, 213, 928, 1042, 937, 239, 1039, 307, 495, 944, 449, 449, 947, - 713, 948, 950, 461, 250, 251, 252, 253, 254, 255, 954, 495, 971, 973, 978, 32, 990, 56, 992, 1017, - 1002, 256, 257, 258, 880, 934, 713, 54, 855, 616, 792, 859, 242, 243, 244, 245, 246, 247, 860, - 314, 799, 861, 558, 30, 302, 862, 985, 863, 644, 32, 846, 37, 783, 645, 709, 449, 864, 747, 307, - 401, 610, 512, 769, 461, 242, 243, 244, 245, 246, 247, 78, 250, 251, 252, 253, 254, 255, 32, 839, - 709, 867, 962, 326, 819, 975, 1001, 708, 94, 256, 257, 258, 804, 993, 889, 875, 278, 938, 537, - 829, 513, 1022, 857, 865, 866, 871, 822, 536, 684, 238, 927, 327, 708, 888, 634, 54, 469, 32, 709, - 709, 709, 470, 749, 752, 307, 905, 95, 330, 613, 901, 461, 898, 604, 891, 0, 0, 0, 0, 307, 0, 0, - 0, 0, 217, 0, 0, 0, 239, 0, 1018, 708, 708, 708, 37, 322, 324, 0, 215, 0, 0, 0, 0, 327, 0, 0, 94, - 0, 1025, 214, 380, 874, 216, 926, 308, 94, 0, 0, 0, 330, 918, 921, 922, 924, 0, 0, 307, 5, 0, 329, - 0, 0, 278, 0, 983, 0, 930, 0, 0, 0, 327, 213, 327, 265, 95, 987, 322, 1021, 0, 615, 314, 0, 309, - 95, 0, 0, 330, 94, 330, 1014, 709, 964, 94, 1016, 963, 0, 94, 71, 0, 965, 0, 308, 512, 961, 0, - 264, 918, 921, 922, 924, 0, 0, 0, 0, 0, 322, 66, 930, 874, 0, 1029, 0, 708, 0, 0, 95, 0, 931, 0, - 315, 95, 318, 320, 94, 95, 94, 0, 314, 986, 309, 513, 0, 301, 0, 238, 0, 0, 319, 0, 0, 307, 997, - 331, 409, 930, 0, 930, 0, 0, 512, 0, 349, 350, 0, 0, 307, 0, 238, 0, 0, 0, 95, 0, 95, 874, 1034, - 0, 306, 931, 709, 316, 709, 239, 325, 409, 0, 409, 0, 1041, 0, 0, 410, 0, 66, 0, 401, 0, 513, 0, - 409, 0, 329, 323, 0, 0, 239, 217, 0, 0, 0, 0, 708, 0, 708, 796, 313, 0, 931, 0, 0, 215, 0, 410, 0, - 410, 805, 806, 0, 0, 400, 709, 214, 0, 400, 216, 407, 0, 410, 0, 709, 709, 709, 0, 0, 959, 709, - 313, 329, 313, 233, 0, 0, 709, 323, 401, 0, 0, 0, 0, 329, 0, 313, 708, 213, 0, 0, 407, 0, 407, 0, - 0, 708, 708, 708, 0, 318, 320, 708, 0, 0, 0, 407, 0, 0, 708, 709, 0, 0, 984, 301, 988, 319, 233, - 0, 0, 0, 89, 0, 709, 0, 709, 0, 709, 318, 320, 0, 0, 408, 87, 0, 0, 0, 0, 1015, 0, 0, 0, 708, 550, - 551, 552, 553, 554, 555, 374, 0, 0, 263, 709, 0, 708, 400, 708, 400, 708, 256, 257, 258, 0, 262, - 0, 0, 217, 0, 433, 434, 435, 0, 0, 217, 217, 374, 316, 0, 0, 838, 215, 0, 0, 0, 708, 0, 0, 215, - 215, 0, 217, 214, 0, 0, 216, 0, 0, 0, 214, 214, 0, 216, 216, 0, 215, 329, 443, 401, 317, 0, 0, 0, - 0, 0, 401, 214, 0, 0, 216, 0, 0, 0, 400, 213, 400, 0, 0, 0, 0, 0, 213, 213, 408, 0, 0, 0, 0, 932, - 933, 306, 935, 0, 0, 0, 0, 500, 453, 213, 0, 0, 0, 0, 0, 0, 0, 0, 400, 0, 0, 0, 0, 0, 0, 250, 251, - 252, 253, 254, 255, 0, 318, 320, 0, 0, 0, 0, 538, 0, 0, 0, 256, 257, 258, 544, 0, 0, 0, 408, 670, - 671, 672, 511, 400, 400, 0, 0, 673, 0, 0, 408, 307, 0, 0, 0, 374, 0, 0, 0, 32, 0, 0, 250, 251, - 252, 253, 254, 255, 0, 250, 251, 252, 253, 254, 255, 0, 989, 0, 0, 256, 257, 258, 0, 453, 265, 0, - 256, 257, 258, 0, 263, 0, 0, 0, 0, 37, 0, 0, 0, 0, 0, 0, 368, 0, 0, 0, 0, 32, 307, 0, 0, 0, 0, 0, - 32, 259, 599, 260, 400, 0, 639, 0, 0, 511, 54, 263, 263, 0, 318, 0, 0, 317, 0, 0, 0, 0, 0, 385, - 386, 0, 263, 0, 263, 37, 0, 0, 0, 0, 0, 0, 37, 0, 417, 0, 418, 0, 0, 0, 434, 435, 414, 0, 0, 0, - 415, 0, 329, 0, 0, 0, 0, 0, 54, 679, 0, 0, 0, 0, 0, 54, 0, 0, 0, 0, 696, 7, 8, 9, 10, 11, 12, 0, - 0, 0, 0, 0, 0, 0, 695, 0, 0, 0, 13, 14, 15, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, - 26, 27, 28, 0, 231, 30, 599, 0, 753, 0, 0, 32, 33, 34, 0, 0, 0, 0, 0, 0, 263, 318, 320, 250, 251, - 252, 253, 254, 255, 0, 515, 0, 506, 0, 0, 0, 0, 0, 0, 0, 256, 257, 258, 0, 0, 0, 0, 37, 0, 38, 39, - 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 0, 263, 0, 32, 263, 0, 0, 0, 0, 0, 0, 54, - 789, 562, 0, 0, 566, 0, 0, 0, 0, 0, 263, 0, 798, 0, 0, 0, 250, 251, 252, 253, 254, 255, 581, 0, 0, - 0, 0, 37, 0, 0, 0, 0, 0, 256, 257, 258, 0, 0, 0, 0, 0, 0, 263, 0, 0, 0, 0, 0, 415, 0, 0, 0, 0, 0, - 611, 0, 54, 0, 0, 627, 0, 32, 259, 250, 251, 252, 253, 254, 255, 0, 0, 0, 0, 0, 250, 251, 252, - 253, 254, 255, 256, 257, 258, 0, 0, 0, 400, 0, 0, 0, 840, 256, 257, 258, 0, 0, 0, 37, 123, 124, - 125, 126, 127, 128, 129, 130, 131, 0, 32, 0, 263, 0, 0, 30, 0, 329, 0, 0, 0, 32, 0, 0, 0, 0, 0, - 878, 54, 0, 0, 511, 0, 0, 250, 251, 252, 253, 254, 255, 0, 0, 0, 0, 0, 0, 37, 400, 0, 0, 0, 256, - 257, 258, 0, 0, 0, 873, 0, 250, 251, 252, 253, 254, 255, 0, 0, 0, 329, 0, 0, 265, 0, 0, 0, 54, - 256, 257, 258, 32, 0, 0, 0, 0, 0, 917, 54, 0, 0, 0, 0, 0, 0, 0, 0, 0, 263, 263, 263, 0, 0, 0, 0, - 0, 32, 329, 0, 329, 759, 760, 761, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 695, 0, 0, 0, 0, 0, 0, 329, 0, 0, - 0, 0, 0, 925, 0, 0, 0, 0, 329, 37, 0, 374, 925, 54, 0, 250, 251, 252, 253, 254, 255, 0, 0, 0, 0, - 0, 403, 1010, 263, 0, 1011, 0, 256, 257, 258, 0, 0, 0, 0, 0, 566, 0, 0, 0, 0, 400, 0, 0, 0, 0, 0, - 0, 400, 0, 925, 302, 0, 0, 0, 925, 32, 0, 0, 925, 16, 17, 18, 0, 374, 453, 408, 20, 21, 22, 23, - 24, 25, 26, 27, 28, 0, 231, 0, 0, 0, 0, 0, 0, 0, 7, 8, 9, 10, 11, 12, 0, 0, 0, 0, 0, 925, 408, - 925, 408, 0, 0, 13, 14, 15, 0, 16, 17, 18, 19, 0, 0, 408, 20, 21, 22, 23, 24, 25, 26, 27, 28, 599, - 231, 30, 275, 89, 0, 263, 0, 32, 33, 263, 0, 263, 0, 0, 0, 872, 0, 877, 0, 0, 0, 879, 0, 250, 251, - 252, 253, 254, 255, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 256, 257, 258, 37, 0, 38, 39, 40, 41, 42, 43, - 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 0, 0, 0, 0, 0, 0, 263, 32, 0, 0, 0, 54, 0, 0, 0, 0, 0, 0, - 262, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 263, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, +static const short yytable[] = { 94, 280, 77, 328, 236, 63, 295, 296, 297, 234, 414, 483, 499, 395, + 467, 76, 86, 98, 602, 306, 704, 628, 276, 359, 470, 471, 251, 514, 71, 240, 364, 274, 394, 370, + 596, 595, 103, 718, 95, 899, 600, 912, 344, 312, 722, 837, 242, 415, 509, 564, 82, 366, 393, 482, + 587, 862, 693, 237, 646, 647, 601, 545, 360, 545, 817, 243, 694, 241, 326, 217, 545, -372, 240, + 324, 919, 774, 90, 545, 385, 305, 240, 598, 316, 508, 452, 310, 313, 329, 219, 288, 334, 335, 360, + 240, 367, 368, -372, 665, 3, 658, 545, 782, 782, 782, 355, 122, 123, 266, 289, 732, 241, 723, 431, + 771, 361, 432, 301, 113, 241, 771, 427, 327, 82, 311, 314, 384, 122, 123, 602, 524, 499, 241, + -374, 545, 114, 627, 334, 335, 575, 652, 598, 962, 733, 395, 361, -2, 688, 545, 90, 666, 583, 475, + 218, 217, 275, 122, 123, -374, 341, 546, -60, 546, 538, -60, 336, 977, 115, 986, 728, 330, 601, + 452, 357, 302, 216, 728, -60, 809, 623, -60, 1011, -339, 537, 964, 653, 654, 374, 741, 376, 298, + 332, 342, 369, 1010, 731, 343, 373, 309, 375, -60, 37, -371, -60, 199, 452, -489, 612, -371, 854, + 214, 336, -489, 379, 582, 730, 584, 640, 378, 660, 587, 20, 21, 465, 372, 199, 856, 669, 670, 671, + 323, 855, 546, -60, 422, 310, -60, 218, 240, 215, 353, 641, 837, 1041, 579, -173, 728, -60, 290, + 195, -60, 429, -370, 771, 199, 837, 115, 837, -370, 216, 445, -373, 310, -176, 324, -372, 237, + 900, 412, -173, 771, 356, 1000, 311, 341, 903, 241, 441, 329, 443, 37, 240, -365, 1033, 240, 916, + -373, 440, -365, 442, -372, 372, 315, -377, 214, 782, 240, -341, 423, 1033, 311, 1046, 672, -341, + 291, 292, 413, 342, 1001, 1002, 1046, 343, 507, 474, 507, 452, 703, 289, -377, 241, 444, -376, + 241, 215, -375, 604, 310, -369, 945, 771, 605, 82, 1037, -369, 241, 332, 1004, 111, 112, 396, 66, + 511, 512, 1044, 410, 1037, -376, 309, -374, -375, 611, 958, 961, 782, 718, 782, 1049, 90, 390, + 1025, 330, 722, 942, 549, 311, -363, 37, 590, 591, 235, 412, -363, 771, -374, 309, 316, 386, 955, + 896, 516, 898, 332, 520, -342, 957, 829, 830, 831, 832, -342, 384, 240, 310, 332, -153, 891, 771, + 217, 217, 324, 695, 405, 425, 217, 217, 217, 550, 520, 413, 457, 586, 200, 66, 329, 849, -489, + 718, 517, -373, 240, 413, -489, 316, 722, 217, 412, 576, 301, 948, 241, 311, 435, 761, 325, -278, + -364, 459, 412, 309, -280, 975, -364, 718, -373, 551, 413, 410, 481, 522, 722, 507, 507, -491, + 310, 851, 521, 316, 241, -491, 655, 516, 342, 888, 413, 656, 343, 217, -377, 523, 539, -117, -117, + 620, 315, 418, 413, -117, 553, 404, 418, 218, 218, 404, 552, -368, -263, 218, 218, 218, 633, -368, + 311, -377, 643, 686, 330, 567, 687, 517, 571, 974, 410, 216, 216, 309, 685, 635, 218, 216, 216, + 216, 1029, 1030, 410, -329, 607, 332, 631, 309, 1012, 972, 1013, 217, 739, 657, 740, 918, 634, + -329, 216, 308, 1016, 1014, 318, 1017, 1015, 499, 214, 214, 536, 609, 624, 841, 214, 214, 214, + -329, 266, 550, 218, 244, 245, 246, 247, 248, 249, 841, 974, 997, 240, -329, 610, -376, 310, 214, + 309, 215, 215, 675, 676, 677, 216, 215, 215, 215, 315, 772, 235, 841, -367, 616, 404, -329, 404, + 626, -367, 551, -376, 619, 195, -375, 807, 839, 215, 840, 507, 536, 241, 618, 277, 648, 311, 662, + 651, 337, 218, 214, -366, 659, 663, 683, 315, 667, -366, 664, -375, 605, 562, 690, 692, 235, 668, + 696, 325, 697, 727, 729, 216, 452, 735, 315, 240, 736, 755, 759, 215, 252, 253, 254, 255, 256, + 257, 315, 756, 656, 762, 787, 935, 404, 250, 404, 788, 791, 258, 259, 260, 793, 240, 739, 796, + 309, 799, 214, 244, 245, 246, 247, 248, 249, 241, 794, 800, 1032, 336, 806, 309, 817, 815, 824, + 377, 499, 32, 404, 820, 889, 452, 452, 740, 892, 913, -335, 215, 921, 792, 922, 241, 499, 1048, + 934, 1018, 943, 954, 950, 953, 973, 977, 377, 318, 32, 244, 245, 246, 247, 248, 249, 956, 960, 37, + 979, 404, 404, 1008, 984, 996, 56, 998, 1023, 861, 768, 865, 1034, 752, 1036, 866, 217, 940, 852, + 252, 253, 254, 255, 256, 257, 452, 383, 1045, 267, 886, 798, 867, 620, 868, 805, 315, 258, 259, + 260, 991, 235, 869, 713, 316, 649, 789, 870, 516, 650, 614, 691, 845, 308, 78, 775, 873, 825, 968, + 981, 456, 1007, 895, 810, 944, 32, 261, 999, 713, 541, 328, 540, 714, 424, 94, 835, 872, 404, + 1028, 863, 280, 689, 639, 828, 933, 317, 517, 320, 322, 871, 877, 881, 472, 911, 936, 240, 473, + 714, 754, 617, 218, 37, 71, 904, 907, 757, 515, 713, 713, 713, 1024, 608, 95, 244, 245, 246, 247, + 248, 249, 377, 331, 897, 216, 0, 464, 0, 0, 0, 1031, 0, 54, 894, 0, 241, 0, 326, 714, 714, 714, 0, + 324, 0, 0, 0, 0, 936, 0, 456, 0, 844, 880, 94, 0, 928, 329, 0, 924, 214, 32, 310, 94, 0, 0, 0, 0, + 0, 927, 930, 932, 0, 0, 562, 0, 0, 0, 280, 0, 0, 993, 0, 603, 0, 936, 0, 936, 464, 215, 515, 327, + 95, 0, 324, 0, 0, 37, 0, 0, 311, 95, 0, 989, 0, 94, 0, 967, 329, 0, 94, 713, 928, 217, 94, 924, + 316, 266, 0, 310, 516, 0, 969, 0, 0, 927, 930, 971, 1020, 0, 880, 1027, 1022, 324, 0, 0, 320, 322, + 0, 937, 714, 970, 0, 95, 0, 329, 0, 329, 95, 0, 0, 94, 95, 94, 464, 0, 0, 311, 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115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, - 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 0, 145, - 146, 147, 148, 149, 150, 0, 151, 152, 153, 154, 0, 0, 155, 156, 157, 158, 159, 160, 161, 162, 163, + 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 38, 39, 40, 41, 42, 43, + 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 195, 0, 196, 197, 198, 199, 0, 200, 201, 202, 0, 203, 204, + 205, 206, 207, 208, 209, 210, 211, 212, 213, 116, 117, 118, 119, 120, 121, 367, 368, 124, 125, + 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 705, 137, 138, 139, 140, 141, 142, 143, 144, + 145, 0, 146, 147, 148, 149, 150, 151, 0, 152, 153, 154, 155, 0, 0, 156, 157, 158, 159, 160, 161, + 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 776, 173, 174, 175, 176, 177, 178, 179, 180, + 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 0, 706, 0, 38, 39, 40, 41, 42, 43, 44, 45, + 46, 47, 48, 49, 50, 51, 52, 905, 607, 906, 777, 708, 778, 369, 0, 780, 201, 711, 0, 203, 204, 781, + 206, 207, 208, 209, 210, 211, 212, 712, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, + 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, + 146, 147, 148, 149, 150, 151, 0, 152, 153, 154, 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, - 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, - 49, 50, 51, 52, 0, 194, 0, 195, 196, 197, 198, 0, 481, 200, 201, 0, 202, 203, 204, 205, 206, 207, - 208, 209, 210, 211, 212, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, - 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 0, 145, 146, 147, - 148, 149, 150, 0, 151, 152, 153, 154, 0, 0, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, - 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, - 185, 186, 187, 188, 189, 190, 191, 192, 193, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, - 51, 52, 0, 194, 0, 195, 196, 197, 198, 0, 0, 200, 201, 0, 202, 203, 204, 205, 206, 207, 208, 209, - 210, 211, 212, 115, 116, 117, 118, 119, 120, 364, 365, 123, 124, 125, 126, 127, 128, 129, 130, - 131, 132, 133, 134, 700, 136, 137, 138, 139, 140, 141, 142, 143, 144, 0, 145, 146, 147, 148, 149, - 150, 0, 151, 152, 153, 154, 0, 0, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, - 168, 169, 170, 770, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, - 187, 188, 189, 190, 0, 701, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 603, - 0, 771, 703, 772, 366, 773, 774, 200, 706, 0, 202, 203, 775, 205, 206, 207, 208, 209, 210, 211, - 707, 115, 116, 117, 118, 119, 120, 364, 365, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, - 133, 134, 700, 136, 137, 138, 139, 140, 141, 142, 143, 144, 0, 145, 146, 147, 148, 149, 150, 0, - 151, 152, 153, 154, 0, 0, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, - 169, 170, 770, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, - 188, 189, 190, 0, 701, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 603, 0, - 771, 703, 772, 366, 779, 774, 200, 706, 0, 202, 203, 775, 205, 206, 207, 208, 209, 210, 211, 707, - 115, 116, 117, 118, 119, 120, 364, 365, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, - 134, 700, 136, 137, 138, 139, 140, 141, 142, 143, 144, 0, 145, 146, 147, 148, 149, 150, 0, 151, - 152, 153, 154, 0, 0, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, - 170, 770, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, - 189, 190, 0, 701, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 603, 0, 771, - 703, 772, 366, 780, 774, 200, 706, 0, 202, 203, 775, 205, 206, 207, 208, 209, 210, 211, 707, 115, - 116, 117, 118, 119, 120, 364, 365, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, - 700, 136, 137, 138, 139, 140, 141, 142, 143, 144, 0, 145, 146, 147, 148, 149, 150, 0, 151, 152, - 153, 154, 0, 0, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, - 770, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, - 190, 0, 701, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 603, 0, 771, 703, - 772, 366, 0, 774, 200, 706, 941, 202, 203, 775, 205, 206, 207, 208, 209, 210, 211, 707, 115, 116, - 117, 118, 119, 120, 364, 365, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 700, - 136, 137, 138, 139, 140, 141, 142, 143, 144, 0, 145, 146, 147, 148, 149, 150, 0, 151, 152, 153, - 154, 0, 0, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 770, - 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 0, - 701, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 603, 0, 771, 703, 772, 366, - 0, 774, 200, 706, 943, 202, 203, 775, 205, 206, 207, 208, 209, 210, 211, 707, 115, 116, 117, 118, - 119, 120, 364, 365, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 700, 136, 137, - 138, 139, 140, 141, 142, 143, 144, 0, 145, 146, 147, 148, 149, 150, 0, 151, 152, 153, 154, 0, 0, - 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 357, 172, 173, - 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 0, 701, 0, - 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 603, 0, 702, 703, 704, 366, 0, 705, - 200, 706, 0, 202, 203, 358, 205, 206, 207, 208, 209, 210, 211, 707, -589, -589, -589, -589, -589, - -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, - -589, -589, -589, -589, -589, -589, -589, -589, -589, 0, -589, -589, -589, -589, -589, -589, 0, - -589, -589, -589, -589, 0, 0, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, - -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, - -589, -589, -589, -589, -589, -589, -589, -589, -589, 0, -589, 0, -589, -589, -589, -589, -589, - -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, 0, -589, 0, -625, -589, -589, -589, 0, - -589, -589, -589, 0, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, -589, 115, 116, - 117, 118, 119, 120, 364, 365, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 700, - 136, 137, 138, 139, 140, 141, 142, 143, 144, 0, 145, 146, 147, 148, 149, 150, 0, 151, 152, 153, - 154, 0, 0, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 738, - 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 0, - 701, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 603, 0, 0, 703, 0, 366, 0, - 739, 200, 706, 0, 202, 203, 740, 205, 206, 207, 208, 209, 210, 211, 707, 115, 116, 117, 118, 119, - 120, 364, 365, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 700, 136, 137, 138, - 139, 140, 141, 142, 143, 144, 0, 145, 146, 147, 148, 149, 150, 0, 151, 152, 153, 154, 0, 0, 155, - 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 0, 172, 173, 174, 175, - 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 0, 701, 0, 38, 39, 40, - 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 603, 0, 0, 703, 0, 366, 0, 705, 200, 706, 0, - 202, 203, 0, 205, 206, 207, 208, 209, 210, 211, 707, 115, 116, 117, 118, 119, 120, 364, 365, 123, - 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 700, 136, 137, 138, 139, 140, 141, 142, - 143, 144, 0, 145, 146, 147, 148, 149, 150, 0, 151, 152, 153, 154, 0, 0, 155, 156, 157, 158, 159, - 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 0, 172, 173, 174, 175, 176, 177, 178, 179, - 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 0, 0, 0, 38, 39, 40, 41, 42, 43, 44, 45, - 46, 47, 48, 49, 50, 51, 52, 0, 603, 0, 0, 703, 0, 366, 0, 0, 200, 706, 0, 202, 203, 0, 205, 206, - 207, 208, 209, 210, 211, 707, 225, 226, 227, 228, 229, 230, 0, 0, 521, 0, 0, 0, 0, 0, 0, 0, 0, - 132, 133, 134, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 27, 28, 0, 231, 0, 0, 0, 0, - 0, 0, 32, 33, 0, 0, 0, 522, 523, 0, 0, 0, 0, 0, 168, 169, 170, 524, 172, 173, 174, 175, 176, 177, - 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 521, 37, 0, 38, 39, 40, 41, 42, - 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 0, 0, 525, 0, 526, 527, 0, 528, 200, 529, 0, 202, 203, - 530, 205, 206, 207, 208, 209, 210, 211, 0, 0, 522, 523, 0, 0, 0, 0, 0, 168, 169, 170, 524, 172, - 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 0, 250, - 251, 252, 253, 254, 255, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 256, 257, 258, 525, 0, 526, 527, 0, 528, - 200, 529, 0, 202, 203, 530, 205, 206, 207, 208, 209, 210, 211, 7, 8, 9, 10, 11, 12, 32, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 13, 14, 15, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 27, 28, - 0, 29, 30, 31, 0, 37, 0, 0, 32, 33, 34, 35, 36, 0, 0, 0, 0, 0, 0, 0, 0, 0, 403, 0, 0, 0, 404, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, - 49, 50, 51, 52, 53, 7, 8, 9, 10, 11, 12, 0, 0, 0, 0, 0, 54, 0, 0, 0, 0, 0, 13, 14, 15, 0, 16, 17, - 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 27, 28, 851, 852, 30, 31, 0, 0, 0, 0, 32, 33, 34, 0, - 853, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 250, 251, 252, 253, 254, 255, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 256, 257, 258, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 854, 7, 8, 9, - 10, 11, 12, 32, 0, 0, 0, 0, 54, 0, 0, 0, 0, 0, 13, 14, 15, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, - 23, 24, 25, 26, 27, 28, 851, 231, 30, 275, 0, 37, 0, 0, 32, 33, 0, 0, 276, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 1010, 0, 0, 1011, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, - 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 7, 8, 9, 10, 11, 12, 0, 0, 0, 0, 0, 0, 54, 0, 0, 0, 0, - 13, 14, 15, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 27, 28, 0, 231, 30, 0, 0, 0, - 0, 0, 32, 33, 0, 0, 0, 0, 0, 0, 250, 251, 252, 253, 254, 255, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 256, 257, 258, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, - 51, 52, 32, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 54, 0, 0, 0, 225, 226, 227, 228, 229, 230, 20, 21, - 22, 23, 24, 25, 26, 27, 28, 394, 231, 132, 133, 134, 37, 16, 17, 18, 19, 395, 0, 0, 20, 21, 22, - 23, 24, 25, 26, 27, 28, 0, 231, 30, 275, 404, 0, 0, 0, 32, 33, 0, 0, 276, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 0, 0, 0, 0, 37, 0, 38, 39, - 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 225, 226, 227, 228, 229, 230, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 132, 133, 134, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 27, 28, - 0, 231, 30, 0, 0, 0, 0, 0, 32, 33, 34, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, - 51, 52, 225, 226, 227, 228, 229, 230, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 132, 133, 134, 0, 16, 17, - 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 27, 28, 0, 231, 30, 0, 0, 0, 0, 0, 32, 33, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, - 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 225, 226, 227, 228, 229, 230, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 132, 133, 134, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, - 27, 28, 0, 231, 0, 0, 0, 0, 0, 0, 32, 33, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, - 49, 50, 51, 52, 225, 226, 227, 228, 229, 230, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 132, 133, 134, 0, - 624, 0, 625, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 27, 28, 0, 231, 0, 0, 0, 0, 0, 0, 32, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 225, 226, 227, 228, 229, 230, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 132, 133, 134, 0, 0, 0, 0, 0, 0, 0, 0, 20, 21, 22, 23, 24, 25, - 26, 27, 28, 0, 231, 0, 0, 0, 0, 0, 0, 32, 33, 0, 0, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 27, 28, - 394, 231, 0, 0, 0, 0, 0, 0, 0, 0, 395, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, - 44, 45, 46, 47, 48, 49, 50, 51, 52, 339, 0, 0, 0, 0, 0, 0, 0, 0, 38, 39, 40, 41, 42, 43, 44, 45, - 46, 47, 48, 49, 50, 51, 52, -286, 0, 0, 0, 0, 0, 0, 0, 0, 340, 0, 0, 0, 341, 20, 21, 22, 23, 24, - 25, 26, 27, 28, 394, 231, 0, 0, 0, 0, 0, 0, 0, 0, 395, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 339, 0, 0, 0, 0, 0, 0, 0, 0, 38, 39, 40, 41, 42, 43, 44, 45, - 46, 47, 48, 49, 50, 51, 52, 0, 0, 0, 0, 0, 0, 0, 0, 0, 340, 0, 0, 0, 341 }; - -static const short yycheck[] = { 5, 71, 98, 77, 5, 354, 104, 5, 35, 34, 34, 271, 454, 264, 5, 5, 5, - 5, 80, 81, 82, 338, 90, 380, 91, 566, 487, 264, 362, 34, 98, 576, 371, 34, 223, 577, 34, 451, 5, - 5, 445, 340, 341, 842, 241, 819, 98, 194, 741, 69, 498, 499, 631, 789, 201, 272, 264, 417, 637, - 353, 637, 372, 454, 566, 91, 9, 10, 34, 31, 452, 3, 0, 77, 98, 98, 222, 77, 3, 3, 77, 85, 77, 5, - 847, 85, 90, 91, 426, 63, 448, 11, 9, 10, 98, 453, 3, 3, 77, 335, 438, 11, 248, 953, 9, 10, 45, - 90, 102, 63, 101, 77, 77, 63, 36, 110, 107, 577, 44, 85, 84, 47, 563, 43, 90, 91, 25, 3, 510, 979, - 389, 110, 98, 43, 77, 114, 9, 10, 107, 5, 83, 115, 338, 393, 290, 109, 479, 506, 101, 91, 49, 914, - 114, 511, 107, 77, 106, 393, 5, 0, 52, 115, 101, 102, 233, 115, 235, 110, 34, 101, 102, 114, 563, - 105, 9, 10, 98, 101, 974, 104, 584, 31, 917, 981, 686, 421, 393, 34, 107, 240, 107, 769, 111, 769, - 101, 31, 102, 507, 508, 105, 558, 997, 107, 9, 10, 609, 31, 466, 786, 31, 786, 280, 84, 232, 106, - 234, 240, 240, 454, 286, 112, 437, 581, 439, 517, 101, 102, 84, 297, 105, 77, 101, 98, 237, 107, - 286, 240, 109, 31, 101, 784, 599, 110, 431, 936, 107, 114, 298, 83, 1022, 101, 98, 109, 3, 323, - 84, 325, 949, 84, 951, 264, 328, 286, 84, 114, 84, 270, 845, 464, 845, 84, 237, 18, 370, 240, 372, - 820, 107, 114, 283, 109, 111, 286, 283, 828, 109, 283, 101, 109, 114, 109, 881, 114, 107, 298, - 109, 102, 102, 264, 104, 3, 107, 107, 322, 270, 324, 896, 503, 54, 55, 888, 102, 888, 903, 105, - 574, 84, 283, 283, 1012, 286, 114, 577, 103, 328, 106, 106, 563, 270, 348, 23, 112, 298, 101, 912, - 1028, 912, 1030, 105, 107, 107, 407, 84, 265, 101, 328, 1039, 102, 270, 106, 891, 101, 102, 420, - 380, 105, 375, 376, 84, 101, 904, 283, 328, 11, 286, 107, 25, 371, 815, 420, 817, 28, 29, 30, 240, - 101, 380, 101, 31, 383, 33, 107, 106, 109, 43, 640, 641, 642, 392, 393, 49, 44, 392, 240, 47, 808, - 420, 937, 101, 102, 106, 427, 105, 407, 408, 371, 112, 763, 24, 25, 507, 508, 953, 335, 380, 107, - 420, 383, 104, 111, 107, 567, 426, 427, 111, 444, 392, 393, 101, 371, 618, 891, 101, 109, 438, - 461, 283, 102, 979, 286, 105, 407, 408, 268, 31, 32, 103, 272, 102, 371, 454, 477, 107, 801, 420, - 101, 102, 461, 105, 105, 426, 28, 29, 30, 84, 407, 103, 765, 1008, 1009, 102, 413, 438, 3, 4, 5, - 6, 7, 8, 31, 32, 101, 548, 101, 426, 489, 408, 107, 454, 109, 104, 932, 489, 101, 101, 461, 438, - 1016, 420, 421, 102, 102, 104, 491, 426, 355, 356, 106, 1027, 108, 1029, 361, 362, 363, 108, 111, - 438, 102, 90, 355, 356, 1040, 108, 489, 107, 361, 362, 363, 112, 845, 355, 356, 382, 355, 356, - 632, 361, 362, 363, 361, 362, 363, 106, 103, 548, 370, 382, 372, 989, 882, 472, 112, 43, 101, 651, - 559, 392, 382, 84, 563, 382, 84, 355, 356, 12, 13, 14, 15, 361, 362, 363, 929, 102, 420, 424, 101, - 101, 832, 101, 630, 101, 107, 548, 109, 107, 3, 109, 111, 424, 382, 108, 111, 106, 559, 105, 112, - 101, 563, 106, 424, 83, 108, 424, 101, 241, 84, 548, 101, 107, 967, 111, 83, 437, 449, 439, 3, 4, - 5, 6, 7, 8, 563, 101, 489, 874, 105, 630, 112, 107, 479, 109, 424, 20, 21, 22, 890, 891, 892, 874, - 106, 101, 101, 105, 479, 103, 983, 471, 112, 112, 105, 287, 106, 656, 36, 479, 43, 656, 479, 83, - 104, 48, 3, 106, 1011, 630, 237, 108, 101, 3, 4, 5, 6, 7, 8, 107, 101, 1014, 83, 1016, 108, 112, - 931, 507, 508, 104, 101, 479, 101, 1036, 46, 656, 1029, 264, 1026, 66, 931, 932, 108, 953, 112, - 108, 338, 3, 4, 5, 6, 7, 8, 108, 1042, 104, 112, 108, 48, 101, 5, 102, 101, 977, 20, 21, 22, 797, - 878, 979, 113, 789, 753, 673, 789, 3, 4, 5, 6, 7, 8, 789, 763, 682, 789, 682, 42, 43, 789, 961, - 789, 502, 48, 767, 84, 651, 503, 577, 989, 789, 605, 328, 582, 472, 763, 638, 398, 3, 4, 5, 6, 7, - 8, 5, 3, 4, 5, 6, 7, 8, 48, 757, 602, 789, 917, 875, 729, 945, 975, 577, 789, 20, 21, 22, 687, - 970, 813, 789, 866, 887, 398, 737, 763, 1003, 789, 789, 789, 789, 732, 397, 559, 810, 868, 875, - 602, 810, 489, 113, 347, 48, 640, 641, 642, 347, 609, 614, 393, 841, 789, 875, 474, 832, 464, 830, - 459, 816, -1, -1, -1, -1, 407, -1, -1, -1, -1, 690, -1, -1, -1, 810, -1, 992, 640, 641, 642, 84, - 875, 875, -1, 690, -1, -1, -1, -1, 926, -1, -1, 866, -1, 1010, 690, 503, 789, 690, 866, 874, 875, - -1, -1, -1, 926, 866, 866, 866, 866, -1, -1, 454, 4, -1, 98, -1, -1, 961, -1, 959, -1, 875, -1, - -1, -1, 963, 690, 965, 36, 866, 962, 926, 1000, -1, 477, 932, -1, 874, 875, -1, -1, 963, 917, 965, - 984, 741, 917, 922, 988, 917, -1, 926, 789, -1, 922, -1, 931, 932, 917, -1, 853, 922, 922, 922, - 922, -1, -1, -1, -1, -1, 965, 789, 926, 866, -1, 1015, -1, 741, -1, -1, 917, -1, 875, -1, 92, 922, - 94, 95, 963, 926, 965, -1, 989, 961, 931, 932, -1, 89, -1, 974, -1, -1, 94, -1, -1, 548, 974, 99, - 983, 963, -1, 965, -1, -1, 989, -1, 108, 109, -1, -1, 563, -1, 997, -1, -1, -1, 963, -1, 965, 922, - 1020, -1, 90, 926, 830, 93, 832, 974, 875, 1014, -1, 1016, -1, 1033, -1, -1, 983, -1, 866, -1, - 846, -1, 989, -1, 1029, -1, 240, 875, -1, -1, 997, 882, -1, -1, -1, -1, 830, -1, 832, 677, 983, - -1, 965, -1, -1, 882, -1, 1014, -1, 1016, 688, 689, -1, -1, 268, 881, 882, -1, 272, 882, 983, -1, - 1029, -1, 890, 891, 892, -1, -1, 917, 896, 1014, 286, 1016, 922, -1, -1, 903, 926, 905, -1, -1, - -1, -1, 298, -1, 1029, 881, 882, -1, -1, 1014, -1, 1016, -1, -1, 890, 891, 892, -1, 238, 239, 896, - -1, -1, -1, 1029, -1, -1, 903, 936, -1, -1, 961, 236, 963, 238, 965, -1, -1, -1, 5, -1, 949, -1, - 951, -1, 953, 266, 267, -1, -1, 270, 5, -1, -1, -1, -1, 986, -1, -1, -1, 936, 3, 4, 5, 6, 7, 8, - 237, -1, -1, 36, 979, -1, 949, 370, 951, 372, 953, 20, 21, 22, -1, 36, -1, -1, 1018, -1, 307, 308, - 309, -1, -1, 1025, 1026, 264, 265, -1, -1, 753, 1018, -1, -1, -1, 979, -1, -1, 1025, 1026, -1, - 1042, 1018, -1, -1, 1018, -1, -1, -1, 1025, 1026, -1, 1025, 1026, -1, 1042, 420, 329, 1034, 93, - -1, -1, -1, -1, -1, 1041, 1042, -1, -1, 1042, -1, -1, -1, 437, 1018, 439, -1, -1, -1, -1, -1, - 1025, 1026, 371, -1, -1, -1, -1, 876, 877, 328, 879, -1, -1, -1, -1, 368, 335, 1042, -1, -1, -1, - -1, -1, -1, -1, -1, 471, -1, -1, -1, -1, -1, -1, 3, 4, 5, 6, 7, 8, -1, 409, 410, -1, -1, -1, -1, - 399, -1, -1, -1, 20, 21, 22, 406, -1, -1, -1, 426, 28, 29, 30, 380, 507, 508, -1, -1, 36, -1, -1, - 438, 874, -1, -1, -1, 393, -1, -1, -1, 48, -1, -1, 3, 4, 5, 6, 7, 8, -1, 3, 4, 5, 6, 7, 8, -1, - 964, -1, -1, 20, 21, 22, -1, 421, 472, -1, 20, 21, 22, -1, 224, -1, -1, -1, -1, 84, -1, -1, -1, - -1, -1, -1, 224, -1, -1, -1, -1, 48, 931, -1, -1, -1, -1, -1, 48, 49, 454, 51, 582, -1, 492, -1, - -1, 461, 113, 259, 260, -1, 516, -1, -1, 265, -1, -1, -1, -1, -1, 259, 260, -1, 274, -1, 276, 84, - -1, -1, -1, -1, -1, -1, 84, -1, 274, -1, 276, -1, -1, -1, 546, 547, 101, -1, -1, -1, 105, -1, 630, - -1, -1, -1, -1, -1, 113, 545, -1, -1, -1, -1, -1, 113, -1, -1, -1, -1, 572, 3, 4, 5, 6, 7, 8, -1, - -1, -1, -1, -1, -1, -1, 570, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, 31, 32, 33, - 34, 35, 36, 37, 38, 39, -1, 41, 42, 563, -1, 615, -1, -1, 48, 49, 50, -1, -1, -1, -1, -1, -1, 373, - 628, 629, 3, 4, 5, 6, 7, 8, -1, 383, -1, 373, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, -1, -1, -1, - -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, -1, -1, 419, -1, 48, 422, - -1, -1, -1, -1, -1, -1, 113, 668, 419, -1, -1, 422, -1, -1, -1, -1, -1, 440, -1, 680, -1, -1, -1, - 3, 4, 5, 6, 7, 8, 440, -1, -1, -1, -1, 84, -1, -1, -1, -1, -1, 20, 21, 22, -1, -1, -1, -1, -1, -1, - 472, -1, -1, -1, -1, -1, 105, -1, -1, -1, -1, -1, 472, -1, 113, -1, -1, 489, -1, 48, 49, 3, 4, 5, - 6, 7, 8, -1, -1, -1, -1, -1, 3, 4, 5, 6, 7, 8, 20, 21, 22, -1, -1, -1, 846, -1, -1, -1, 758, 20, - 21, 22, -1, -1, -1, 84, 11, 12, 13, 14, 15, 16, 17, 18, 19, -1, 48, -1, 540, -1, -1, 42, -1, 875, - -1, -1, -1, 48, -1, -1, -1, -1, -1, 793, 113, -1, -1, 763, -1, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, - -1, -1, -1, 84, 905, -1, -1, -1, 20, 21, 22, -1, -1, -1, 789, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, - 926, -1, -1, 853, -1, -1, -1, 113, 20, 21, 22, 48, -1, -1, -1, -1, -1, 851, 113, -1, -1, -1, -1, - -1, -1, -1, -1, -1, 624, 625, 626, -1, -1, -1, -1, -1, 48, 963, -1, 965, 624, 625, 626, -1, -1, - -1, -1, -1, -1, -1, -1, -1, -1, 887, -1, -1, -1, -1, -1, -1, 986, -1, -1, -1, -1, -1, 866, -1, -1, - -1, -1, 997, 84, -1, 874, 875, 113, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, 101, 102, 687, -1, - 105, -1, 20, 21, 22, -1, -1, -1, -1, -1, 687, -1, -1, -1, -1, 1034, -1, -1, -1, -1, -1, -1, 1041, - -1, 917, 43, -1, -1, -1, 922, 48, -1, -1, 926, 24, 25, 26, -1, 931, 932, 983, 31, 32, 33, 34, 35, - 36, 37, 38, 39, -1, 41, -1, -1, -1, -1, -1, -1, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, 963, - 1014, 965, 1016, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, 1029, 31, 32, 33, 34, 35, 36, 37, - 38, 39, 989, 41, 42, 43, 789, -1, 791, -1, 48, 49, 795, -1, 797, -1, -1, -1, 789, -1, 791, -1, -1, - -1, 795, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, 84, -1, 86, - 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, -1, -1, -1, -1, -1, -1, -1, 853, 48, -1, - -1, -1, 113, -1, -1, -1, -1, -1, -1, 853, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 878, 3, - 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, - 30, 31, 32, -1, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, 44, -1, -1, 47, 48, 49, 50, 51, 52, 53, - 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, - 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, - 102, -1, 104, 105, 106, 107, -1, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, - 122, 123, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, - 27, 28, 29, 30, 31, 32, -1, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, 44, -1, -1, 47, 48, 49, 50, - 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, - 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, - 99, 100, 101, 102, 103, 104, 105, 106, 107, -1, 109, 110, 111, -1, 113, 114, 115, 116, 117, 118, - 119, 120, 121, 122, 123, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, - 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, -1, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, 44, -1, -1, - 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, - 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, - 95, 96, 97, 98, 99, 100, 101, 102, -1, 104, 105, 106, 107, -1, 109, 110, 111, 112, 113, 114, 115, - 116, 117, 118, 119, 120, 121, 122, 123, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, - 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, -1, 34, 35, 36, 37, 38, 39, -1, 41, 42, - 43, 44, -1, -1, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, - 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, - 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, -1, 104, 105, 106, 107, 108, 109, 110, 111, -1, + 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 38, 39, 40, 41, 42, 43, 44, 45, 46, + 47, 48, 49, 50, 51, 52, 0, 195, 0, 196, 197, 198, 199, 0, 485, 201, 202, 0, 203, 204, 205, 206, + 207, 208, 209, 210, 211, 212, 213, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, + 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, 146, + 147, 148, 149, 150, 151, 0, 152, 153, 154, 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, + 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, + 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, + 49, 50, 51, 52, 0, 195, 0, 196, 197, 198, 199, 0, 0, 201, 202, 0, 203, 204, 205, 206, 207, 208, + 209, 210, 211, 212, 213, 116, 117, 118, 119, 120, 121, 367, 368, 124, 125, 126, 127, 128, 129, + 130, 131, 132, 133, 134, 135, 705, 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, 146, 147, 148, + 149, 150, 151, 0, 152, 153, 154, 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, + 167, 168, 169, 170, 171, 776, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, + 186, 187, 188, 189, 190, 191, 0, 706, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, + 52, 0, 607, 0, 777, 708, 778, 369, 779, 780, 201, 711, 0, 203, 204, 781, 206, 207, 208, 209, 210, + 211, 212, 712, 116, 117, 118, 119, 120, 121, 367, 368, 124, 125, 126, 127, 128, 129, 130, 131, + 132, 133, 134, 135, 705, 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, 146, 147, 148, 149, 150, + 151, 0, 152, 153, 154, 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, + 169, 170, 171, 776, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, + 188, 189, 190, 191, 0, 706, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 607, + 0, 777, 708, 778, 369, 785, 780, 201, 711, 0, 203, 204, 781, 206, 207, 208, 209, 210, 211, 212, + 712, 116, 117, 118, 119, 120, 121, 367, 368, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, + 134, 135, 705, 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, 146, 147, 148, 149, 150, 151, 0, + 152, 153, 154, 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, + 170, 171, 776, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, + 189, 190, 191, 0, 706, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 607, 0, + 777, 708, 778, 369, 786, 780, 201, 711, 0, 203, 204, 781, 206, 207, 208, 209, 210, 211, 212, 712, + 116, 117, 118, 119, 120, 121, 367, 368, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, + 135, 705, 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, 146, 147, 148, 149, 150, 151, 0, 152, + 153, 154, 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, + 171, 776, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, + 190, 191, 0, 706, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 607, 0, 777, + 708, 778, 369, 0, 780, 201, 711, 947, 203, 204, 781, 206, 207, 208, 209, 210, 211, 212, 712, 116, + 117, 118, 119, 120, 121, 367, 368, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, + 705, 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, 146, 147, 148, 149, 150, 151, 0, 152, 153, + 154, 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, + 776, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, + 191, 0, 706, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 607, 0, 777, 708, + 778, 369, 0, 780, 201, 711, 949, 203, 204, 781, 206, 207, 208, 209, 210, 211, 212, 712, 116, 117, + 118, 119, 120, 121, 367, 368, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 705, + 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, 146, 147, 148, 149, 150, 151, 0, 152, 153, 154, + 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 360, + 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 0, + 706, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 607, 0, 707, 708, 709, 369, + 0, 710, 201, 711, 0, 203, 204, 361, 206, 207, 208, 209, 210, 211, 212, 712, -590, -590, -590, + -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, + -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, 0, -590, -590, -590, -590, -590, + -590, 0, -590, -590, -590, -590, 0, 0, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, + -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, + -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, 0, -590, 0, -590, -590, -590, -590, + -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, 0, -590, 0, -626, -590, -590, + -590, 0, -590, -590, -590, 0, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, -590, + 116, 117, 118, 119, 120, 121, 367, 368, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, + 135, 705, 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, 146, 147, 148, 149, 150, 151, 0, 152, + 153, 154, 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, + 171, 743, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, + 190, 191, 0, 706, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 607, 0, 0, + 708, 0, 369, 0, 744, 201, 711, 0, 203, 204, 745, 206, 207, 208, 209, 210, 211, 212, 712, 116, 117, + 118, 119, 120, 121, 367, 368, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 705, + 137, 138, 139, 140, 141, 142, 143, 144, 145, 0, 146, 147, 148, 149, 150, 151, 0, 152, 153, 154, + 155, 0, 0, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 0, 173, + 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 0, 706, + 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 607, 0, 0, 708, 0, 369, 0, 710, + 201, 711, 0, 203, 204, 0, 206, 207, 208, 209, 210, 211, 212, 712, 116, 117, 118, 119, 120, 121, + 367, 368, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 705, 137, 138, 139, 140, + 141, 142, 143, 144, 145, 0, 146, 147, 148, 149, 150, 151, 0, 152, 153, 154, 155, 0, 0, 156, 157, + 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 0, 173, 174, 175, 176, 177, + 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 0, 0, 0, 38, 39, 40, 41, 42, + 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 607, 0, 0, 708, 0, 369, 0, 0, 201, 711, 0, 203, 204, 0, + 206, 207, 208, 209, 210, 211, 212, 712, 226, 227, 228, 229, 230, 231, 0, 0, 525, 0, 0, 0, 0, 0, 0, + 0, 0, 133, 134, 135, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 232, 28, 0, 233, 0, + 0, 0, 0, 0, 0, 32, 33, 0, 0, 0, 526, 527, 0, 0, 0, 0, 0, 169, 170, 171, 528, 173, 174, 175, 176, + 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 0, 37, 0, 38, 39, 40, + 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 0, 0, 529, 0, 530, 531, 0, 532, 201, 533, 0, + 203, 204, 534, 206, 207, 208, 209, 210, 211, 212, 7, 8, 9, 10, 11, 12, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 13, 14, 15, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 232, 28, 857, 858, 30, + 31, 0, 0, 0, 0, 32, 33, 34, 0, 859, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 252, 253, 254, 255, 256, 257, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 258, 259, 260, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, + 49, 50, 51, 52, 860, 7, 8, 9, 10, 11, 12, 32, 0, 0, 0, 0, 54, 0, 0, 0, 0, 0, 13, 14, 15, 0, 16, + 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 232, 28, 857, 233, 30, 277, 0, 37, 0, 0, 32, 33, + 0, 0, 278, 0, 0, 0, 0, 0, 0, 0, 0, 0, 406, 1016, 0, 0, 1017, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 7, 8, 9, 10, 11, + 12, 0, 0, 0, 0, 0, 0, 54, 0, 0, 0, 0, 13, 14, 15, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, + 25, 26, 232, 28, 0, 233, 30, 0, 0, 0, 0, 0, 32, 33, 34, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 252, 253, + 254, 255, 256, 257, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 258, 259, 260, 0, 0, 37, 0, 38, 39, 40, 41, + 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 7, 8, 9, 10, 11, 12, 32, 0, 0, 0, 0, 0, 54, 0, 0, 0, + 0, 13, 14, 15, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 232, 28, 0, 233, 30, 277, + 0, 37, 0, 0, 32, 33, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 406, 0, 0, 0, 407, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, + 7, 8, 9, 10, 11, 12, 0, 0, 0, 0, 0, 0, 54, 0, 0, 0, 0, 13, 14, 15, 0, 16, 17, 18, 19, 0, 0, 0, 20, + 21, 22, 23, 24, 25, 26, 232, 28, 0, 233, 30, 0, 0, 0, 0, 0, 32, 33, 0, 0, 0, 0, 0, 0, 252, 253, + 254, 255, 256, 257, 252, 253, 254, 255, 256, 257, 0, 0, 0, 0, 0, 258, 259, 260, 0, 0, 0, 258, 259, + 260, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 32, 0, 0, 0, 0, 0, + 32, 0, 0, 0, 0, 0, 54, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, + 0, 0, 0, 0, 37, 226, 227, 228, 229, 230, 231, 0, 0, 0, 0, 0, 1016, 0, 0, 1017, 0, 0, 133, 134, + 135, 407, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 232, 28, 0, 233, 30, 277, 0, 0, 0, + 0, 32, 33, 0, 0, 278, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 226, 227, + 228, 229, 230, 231, 20, 21, 22, 23, 24, 25, 26, 232, 28, 397, 233, 133, 134, 135, 0, 16, 17, 18, + 19, 398, 0, 0, 20, 21, 22, 23, 24, 25, 26, 232, 28, 0, 233, 30, 0, 0, 0, 0, 0, 32, 33, 34, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 0, 0, + 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 226, 227, 228, 229, + 230, 231, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 133, 134, 135, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, + 23, 24, 25, 26, 232, 28, 0, 233, 30, 0, 0, 0, 0, 0, 32, 33, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, + 45, 46, 47, 48, 49, 50, 51, 52, 226, 227, 228, 229, 230, 231, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 133, 134, 135, 0, 16, 17, 18, 19, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 232, 28, 0, 233, 0, 0, 0, + 0, 0, 0, 32, 33, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 226, 227, + 228, 229, 230, 231, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 133, 134, 135, 0, 629, 0, 630, 19, 0, 0, 0, + 20, 21, 22, 23, 24, 25, 26, 232, 28, 0, 233, 0, 0, 0, 0, 0, 0, 32, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, + 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 226, 227, 228, 229, 230, 231, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 133, 134, 135, 0, 0, 0, 0, 0, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 232, 28, 0, 233, 0, 0, + 0, 0, 0, 0, 32, 33, 0, 0, 0, 0, 0, 20, 21, 22, 23, 24, 25, 26, 232, 28, 397, 233, 0, 0, 0, 0, 0, + 0, 0, 0, 398, 0, 0, 0, 0, 0, 0, 0, 0, 0, 37, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, + 50, 51, 52, 341, 0, 0, 0, 0, 0, 0, 0, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, + 52, -287, 0, 0, 0, 0, 0, 0, 0, 0, 342, 0, 0, 0, 343, 20, 21, 22, 23, 24, 25, 26, 232, 28, 397, + 233, 0, 0, 0, 0, 0, 0, 0, 0, 398, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 341, 0, 0, 0, 0, 0, 0, 0, 0, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, + 51, 52, 0, 0, 0, 0, 0, 0, 0, 0, 0, 342, 0, 0, 0, 343 }; + +static const short yycheck[] = { 5, 77, 5, 98, 34, 5, 80, 81, 82, 34, 273, 357, 365, 266, 340, 5, 5, + 5, 457, 90, 580, 491, 71, 195, 342, 343, 35, 383, 5, 34, 202, 69, 266, 224, 454, 451, 5, 581, 5, + 825, 456, 848, 104, 91, 581, 746, 34, 274, 375, 420, 5, 223, 266, 356, 448, 795, 570, 34, 502, + 503, 457, 3, 63, 3, 3, 34, 570, 34, 98, 31, 3, 84, 77, 98, 853, 642, 5, 3, 250, 90, 85, 455, 91, + 374, 337, 90, 91, 98, 31, 77, 9, 10, 63, 98, 9, 10, 109, 63, 0, 515, 3, 645, 646, 647, 113, 9, 10, + 36, 77, 77, 77, 581, 44, 636, 115, 47, 85, 51, 85, 642, 292, 98, 77, 90, 91, 243, 9, 10, 567, 392, + 483, 98, 84, 3, 11, 106, 9, 10, 429, 510, 514, 920, 110, 396, 115, 0, 562, 3, 77, 115, 441, 52, + 31, 115, 102, 9, 10, 109, 77, 101, 102, 101, 396, 105, 83, 104, 43, 959, 101, 98, 567, 424, 115, + 101, 31, 101, 102, 691, 481, 105, 987, 101, 396, 923, 511, 512, 235, 603, 237, 107, 98, 110, 107, + 985, 588, 114, 234, 90, 236, 102, 84, 101, 105, 107, 457, 106, 469, 107, 775, 31, 83, 112, 242, + 440, 585, 442, 25, 242, 521, 613, 31, 32, 340, 11, 107, 792, 28, 29, 30, 109, 790, 101, 102, 282, + 239, 105, 115, 242, 31, 23, 49, 942, 1028, 434, 25, 101, 102, 45, 102, 105, 299, 101, 775, 107, + 955, 43, 957, 107, 115, 330, 84, 266, 43, 288, 84, 242, 826, 272, 49, 792, 102, 18, 239, 77, 834, + 242, 325, 288, 327, 84, 285, 101, 1018, 288, 851, 109, 324, 107, 326, 109, 11, 91, 84, 115, 838, + 300, 101, 285, 1034, 266, 1036, 103, 107, 101, 102, 272, 110, 54, 55, 1045, 114, 373, 350, 375, + 567, 578, 285, 109, 285, 330, 84, 288, 115, 84, 101, 330, 101, 894, 851, 106, 285, 1022, 107, 300, + 242, 980, 24, 25, 267, 5, 378, 379, 1033, 272, 1035, 109, 239, 84, 109, 467, 910, 918, 896, 897, + 898, 1046, 285, 101, 1003, 288, 897, 887, 410, 330, 101, 84, 31, 32, 34, 374, 107, 894, 109, 266, + 383, 104, 902, 821, 383, 823, 288, 386, 101, 909, 12, 13, 14, 15, 107, 507, 395, 396, 300, 101, + 814, 918, 358, 359, 423, 571, 102, 105, 364, 365, 366, 410, 411, 374, 337, 447, 109, 77, 423, 769, + 106, 959, 383, 84, 423, 386, 112, 430, 959, 385, 429, 430, 395, 897, 395, 396, 107, 622, 98, 102, + 101, 104, 441, 330, 107, 943, 107, 985, 109, 410, 411, 374, 102, 101, 985, 511, 512, 106, 457, + 771, 102, 464, 423, 112, 101, 464, 110, 807, 429, 106, 114, 427, 84, 104, 101, 101, 102, 480, 272, + 105, 441, 102, 101, 270, 105, 358, 359, 274, 411, 101, 108, 364, 365, 366, 493, 107, 457, 109, + 495, 103, 423, 424, 106, 464, 102, 938, 429, 358, 359, 396, 552, 493, 385, 364, 365, 366, 1014, + 1015, 441, 111, 102, 423, 493, 410, 31, 935, 33, 483, 105, 107, 107, 851, 493, 111, 385, 90, 102, + 44, 93, 105, 47, 888, 358, 359, 395, 107, 103, 107, 364, 365, 366, 111, 475, 552, 427, 3, 4, 5, 6, + 7, 8, 107, 995, 973, 563, 111, 108, 84, 567, 385, 457, 358, 359, 28, 29, 30, 427, 364, 365, 366, + 374, 637, 242, 107, 101, 112, 373, 111, 375, 112, 107, 552, 109, 480, 102, 84, 104, 106, 385, 108, + 656, 452, 563, 106, 43, 101, 567, 3, 101, 103, 483, 427, 101, 101, 111, 105, 410, 108, 107, 111, + 109, 106, 416, 101, 106, 285, 112, 108, 288, 83, 101, 101, 483, 880, 107, 429, 635, 111, 105, 83, + 427, 3, 4, 5, 6, 7, 8, 441, 112, 106, 103, 101, 880, 440, 102, 442, 101, 103, 20, 21, 22, 112, + 661, 105, 105, 552, 106, 483, 3, 4, 5, 6, 7, 8, 635, 112, 36, 1017, 83, 104, 567, 3, 106, 101, + 239, 1032, 48, 474, 108, 101, 937, 938, 107, 83, 104, 112, 483, 108, 661, 101, 661, 1048, 1042, + 101, 989, 46, 112, 66, 108, 937, 104, 266, 267, 48, 3, 4, 5, 6, 7, 8, 108, 108, 84, 112, 511, 512, + 983, 108, 101, 5, 102, 101, 795, 635, 795, 1020, 609, 1022, 795, 695, 884, 773, 3, 4, 5, 6, 7, 8, + 995, 243, 1035, 36, 803, 678, 795, 758, 795, 687, 552, 20, 21, 22, 967, 423, 795, 581, 769, 506, + 656, 795, 769, 507, 475, 567, 763, 330, 5, 643, 795, 734, 923, 951, 337, 981, 819, 692, 893, 48, + 49, 976, 606, 401, 881, 400, 581, 289, 795, 742, 795, 586, 1009, 795, 872, 563, 493, 737, 874, 92, + 769, 94, 95, 795, 795, 795, 349, 847, 881, 816, 349, 606, 613, 477, 695, 84, 795, 836, 838, 618, + 383, 645, 646, 647, 998, 462, 795, 3, 4, 5, 6, 7, 8, 396, 98, 822, 695, -1, 340, -1, -1, -1, 1016, + -1, 113, 816, -1, 816, -1, 881, 645, 646, 647, -1, 881, -1, -1, -1, -1, 932, -1, 424, -1, 758, + 795, 872, -1, 872, 881, -1, 872, 695, 48, 880, 881, -1, -1, -1, -1, -1, 872, 872, 872, -1, -1, + 687, -1, -1, -1, 967, -1, -1, 968, -1, 457, -1, 969, -1, 971, 401, 695, 464, 881, 872, -1, 932, + -1, -1, 84, -1, -1, 880, 881, -1, 965, -1, 923, -1, 923, 932, -1, 928, 746, 928, 888, 932, 928, + 938, 859, -1, 937, 938, -1, 923, -1, -1, 928, 928, 928, 990, -1, 872, 1006, 994, 971, -1, -1, 240, + 241, -1, 881, 746, 923, -1, 923, -1, 969, -1, 971, 928, -1, -1, 969, 932, 971, 467, -1, -1, 937, + 938, 1021, 881, -1, 980, -1, 268, 269, 967, 242, 272, -1, -1, 989, -1, 995, 880, 1026, -1, 995, + -1, 980, -1, 4, -1, -1, -1, 1003, 928, -1, 1039, 969, 932, 971, -1, 567, 507, 270, 888, -1, -1, + 274, 980, 836, 1020, 838, 1022, 309, 310, 311, -1, 989, -1, 932, -1, 288, -1, 995, -1, 1035, 888, + -1, 5, -1, -1, 1003, -1, 300, -1, -1, -1, 971, 836, 937, 838, -1, -1, -1, -1, -1, -1, -1, 1020, + -1, 1022, -1, -1, -1, 852, 989, 969, 1024, 971, 36, 887, 888, -1, 1035, 1031, 1032, -1, -1, -1, + 896, 897, 898, 5, -1, 89, 902, -1, -1, 374, 94, -1, 1048, 909, -1, 99, -1, 1020, -1, 1022, 887, + 888, -1, -1, 108, 109, -1, -1, -1, 896, 897, 898, 1035, -1, 36, 902, -1, 373, -1, 375, -1, -1, + 909, -1, 911, -1, 942, 412, 413, 3, 4, 5, 6, 7, 8, 795, -1, -1, -1, 955, -1, 957, -1, 959, 429, + -1, 20, 21, 22, -1, -1, 1024, -1, -1, -1, 942, 441, -1, 1031, 1032, 3, 4, 5, 6, 7, 8, -1, 423, + 955, 985, 957, 93, 959, 1024, 48, 1048, -1, 20, 21, 22, 1031, 1032, -1, -1, 440, -1, 442, -1, 682, + -1, 475, -1, -1, -1, -1, 989, -1, 1048, 985, 693, 694, -1, -1, -1, -1, 48, -1, -1, 1024, -1, 84, + -1, 872, -1, 769, 1031, 1032, -1, 474, -1, -1, 881, -1, -1, -1, -1, 1020, 101, 1022, -1, -1, 105, + 1048, -1, 238, 520, 240, 1024, -1, 113, 795, 1035, -1, -1, 1031, 1032, -1, -1, -1, -1, -1, -1, -1, + 1040, -1, 511, 512, -1, -1, 225, 1047, 1048, -1, 923, -1, 550, 551, -1, 928, -1, 113, -1, 932, -1, + -1, 3, 4, 5, 6, 7, 8, -1, -1, 3, 4, 5, 6, 7, 8, -1, -1, 576, 20, 21, 22, 261, 262, -1, -1, -1, 20, + 21, 22, 225, -1, -1, -1, 967, -1, 969, 276, 971, 278, -1, 42, 43, -1, 872, -1, -1, 48, -1, -1, -1, + -1, 880, 881, 331, 48, 49, 586, 51, 992, -1, 619, -1, -1, -1, -1, 261, 262, -1, -1, -1, -1, 267, + -1, -1, 633, 634, -1, -1, -1, -1, 276, -1, 278, 3, 4, 5, 6, 7, 8, -1, 84, -1, -1, 371, 923, -1, + -1, -1, -1, 928, 20, 21, 22, 932, -1, 635, -1, -1, 937, 938, -1, 113, -1, -1, 882, 883, -1, 885, + -1, 113, -1, -1, -1, -1, 402, -1, -1, -1, 48, -1, -1, 409, -1, -1, -1, -1, 376, -1, -1, -1, 969, + -1, 971, 3, 4, 5, 6, 7, 8, -1, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, 20, 21, 22, -1, 84, -1, 995, -1, + 20, 21, 22, -1, -1, -1, -1, -1, 28, 29, 30, -1, 376, -1, 422, 43, 36, 425, -1, -1, 48, -1, 386, + -1, -1, 113, -1, -1, 48, 24, 25, 26, -1, -1, 970, 443, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 41, + -1, -1, -1, 496, -1, 3, 4, 5, 6, 7, 8, 422, -1, -1, 425, -1, -1, 84, -1, -1, 475, -1, 20, 21, 22, + -1, 24, 25, 26, 27, -1, -1, 443, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, 113, -1, -1, + -1, 48, 49, 50, 51, 52, -1, 549, 3, 4, 5, 6, 7, 8, -1, 475, -1, -1, -1, -1, -1, -1, -1, -1, -1, + 20, 21, 22, -1, -1, -1, -1, 574, 493, -1, -1, 859, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + 96, 97, 98, 99, 100, 101, -1, -1, -1, 852, -1, -1, -1, -1, -1, -1, -1, 113, -1, -1, -1, -1, 3, 4, + 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, 544, -1, -1, 881, 20, 21, 22, -1, 3, 4, 5, 6, 7, 8, -1, + -1, -1, 3, 4, 5, 6, 7, 8, -1, -1, 20, 21, 22, -1, -1, -1, -1, 48, 911, 20, 21, 22, -1, -1, -1, -1, + 629, 630, 631, -1, -1, -1, 673, 43, -1, -1, -1, -1, 48, 932, -1, 42, -1, -1, 685, -1, -1, 48, -1, + -1, -1, -1, -1, 84, 11, 12, 13, 14, 15, 16, 17, 18, 19, -1, -1, -1, -1, 989, -1, -1, 629, 630, + 631, -1, 105, -1, 969, -1, 971, -1, -1, -1, 113, -1, -1, -1, -1, -1, -1, 692, 3, 4, 5, 6, 7, 8, + -1, -1, 1020, 992, 1022, -1, -1, 113, -1, -1, -1, 20, 21, 22, 1003, -1, 113, 1035, -1, -1, -1, -1, + -1, 11, -1, -1, -1, 764, -1, -1, -1, -1, -1, -1, -1, -1, -1, 692, -1, 48, -1, -1, -1, -1, -1, -1, + -1, -1, -1, -1, -1, 1040, -1, -1, -1, -1, -1, -1, 1047, -1, -1, -1, 799, -1, -1, 53, 54, -1, -1, + -1, -1, -1, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, + 81, 82, -1, 795, -1, 797, -1, -1, -1, 801, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + 104, -1, 106, 107, 857, 109, 110, 111, -1, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, -1, + -1, -1, -1, -1, 795, -1, 797, -1, -1, -1, 801, -1, 803, -1, -1, -1, -1, -1, -1, -1, 893, -1, -1, + -1, 859, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 859, -1, -1, + -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 884, 3, 4, + 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, + 31, 32, -1, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, 44, -1, -1, 47, 48, 49, 50, 51, 52, 53, 54, + 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, + 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, + -1, 104, 105, 106, 107, -1, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, + 123, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, + 28, 29, 30, 31, 32, -1, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, 44, -1, -1, 47, 48, 49, 50, 51, + 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, + 100, 101, 102, 103, 104, 105, 106, 107, -1, 109, 110, 111, -1, 113, 114, 115, 116, 117, 118, 119, + 120, 121, 122, 123, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, + 24, 25, 26, 27, 28, 29, 30, 31, 32, -1, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, 44, -1, -1, 47, + 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, + 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + 96, 97, 98, 99, 100, 101, 102, -1, 104, 105, 106, 107, -1, 109, 110, 111, 112, 113, 114, 115, 116, + 117, 118, 119, 120, 121, 122, 123, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, + 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, -1, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, + 44, -1, -1, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, + 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, + 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, -1, 104, 105, 106, 107, 108, 109, 110, 111, -1, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, -1, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, 44, -1, -1, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, @@ -2808,57 +2808,59 @@ static const short yycheck[] = { 5, 71, 98, 77, 5, 354, 104, 5, 35, 34, 34, 271, 6, 7, 8, -1, -1, 11, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 41, -1, -1, -1, -1, -1, -1, 48, 49, -1, -1, -1, 53, 54, -1, -1, -1, -1, -1, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, - 79, 80, 81, 82, 11, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, -1, -1, - -1, 104, -1, 106, 107, -1, 109, 110, 111, -1, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, - -1, -1, 53, 54, -1, -1, -1, -1, -1, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, - 75, 76, 77, 78, 79, 80, 81, 82, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, - 20, 21, 22, 104, -1, 106, 107, -1, 109, 110, 111, -1, 113, 114, 115, 116, 117, 118, 119, 120, 121, - 122, 3, 4, 5, 6, 7, 8, 48, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, - -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, -1, 84, -1, -1, 48, 49, 50, 51, - 52, -1, -1, -1, -1, -1, -1, -1, -1, -1, 101, -1, -1, -1, 105, -1, -1, -1, -1, -1, -1, -1, -1, -1, - -1, -1, -1, -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, - 100, 101, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, 113, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, - 26, 27, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, -1, -1, -1, -1, 48, 49, - 50, -1, 52, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, - -1, -1, -1, -1, 20, 21, 22, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, - 100, 101, 3, 4, 5, 6, 7, 8, 48, -1, -1, -1, -1, 113, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, - 26, 27, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, -1, 84, -1, -1, 48, 49, - -1, -1, 52, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 102, -1, -1, 105, -1, -1, -1, -1, -1, -1, -1, - -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, - 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, 113, -1, -1, -1, -1, 20, 21, 22, -1, 24, - 25, 26, 27, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 41, 42, -1, -1, -1, -1, -1, 48, - 49, -1, -1, -1, -1, -1, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, - 22, -1, -1, -1, -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, - 99, 100, 48, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 113, -1, -1, -1, 3, 4, 5, 6, 7, 8, 31, - 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 20, 21, 22, 84, 24, 25, 26, 27, 50, -1, -1, 31, 32, 33, - 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, 105, -1, -1, -1, 48, 49, -1, -1, 52, -1, -1, -1, -1, -1, - -1, -1, -1, -1, -1, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, -1, -1, -1, - -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, - -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, 31, 32, 33, - 34, 35, 36, 37, 38, 39, -1, 41, 42, -1, -1, -1, -1, -1, 48, 49, 50, -1, -1, -1, -1, -1, -1, -1, - -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, - -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, - -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, 31, 32, 33, - 34, 35, 36, 37, 38, 39, -1, 41, 42, -1, -1, -1, -1, -1, 48, 49, -1, -1, -1, -1, -1, -1, -1, -1, - -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, - -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, - -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, 31, 32, 33, - 34, 35, 36, 37, 38, 39, -1, 41, -1, -1, -1, -1, -1, -1, 48, 49, -1, -1, -1, -1, -1, -1, -1, -1, + 79, 80, 81, 82, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, -1, -1, + -1, 104, -1, 106, 107, -1, 109, 110, 111, -1, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 3, + 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, + -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, -1, -1, -1, -1, 48, 49, 50, -1, 52, -1, + -1, -1, -1, -1, -1, -1, -1, -1, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + 20, 21, 22, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 3, 4, 5, + 6, 7, 8, 48, -1, -1, -1, -1, 113, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, + 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, -1, 84, -1, -1, 48, 49, -1, -1, 52, -1, -1, + -1, -1, -1, -1, -1, -1, -1, 101, 102, -1, -1, 105, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, + 6, 7, 8, -1, -1, -1, -1, -1, -1, 113, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, + 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, 41, 42, -1, -1, -1, -1, -1, 48, 49, 50, -1, -1, -1, -1, + -1, -1, -1, -1, -1, -1, -1, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, + 22, -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, + 48, -1, -1, -1, -1, -1, 113, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, 31, 32, + 33, 34, 35, 36, 37, 38, 39, -1, 41, 42, 43, -1, 84, -1, -1, 48, 49, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, -1, -1, 101, -1, -1, -1, 105, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, + -1, -1, -1, -1, -1, -1, 113, -1, -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, 31, 32, + 33, 34, 35, 36, 37, 38, 39, -1, 41, 42, -1, -1, -1, -1, -1, 48, 49, -1, -1, -1, -1, -1, -1, 3, 4, + 5, 6, 7, 8, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, 20, 21, 22, -1, -1, -1, 20, 21, 22, -1, -1, 84, + -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 48, -1, -1, -1, -1, -1, 48, -1, + -1, -1, -1, -1, 113, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, -1, 84, -1, -1, -1, -1, -1, 84, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, 102, -1, -1, + 105, -1, -1, 20, 21, 22, 105, 24, 25, 26, 27, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, + 41, 42, 43, -1, -1, -1, -1, 48, 49, -1, -1, 52, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, + 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, 31, 32, 33, 34, 35, 36, 37, 38, + 39, 40, 41, 20, 21, 22, -1, 24, 25, 26, 27, 50, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, + 41, 42, -1, -1, -1, -1, -1, 48, 49, 50, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 86, + 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, + 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, + 41, 42, -1, -1, -1, -1, -1, 48, 49, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, + 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, 20, 21, 22, -1, 24, 25, 26, 27, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, + 41, -1, -1, -1, -1, -1, -1, 48, 49, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, + 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, 20, 21, 22, -1, 24, -1, 26, 27, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, + 41, -1, -1, -1, -1, -1, -1, 48, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, + 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, -1, -1, -1, -1, -1, -1, -1, + -1, -1, -1, 20, 21, 22, -1, -1, -1, -1, -1, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, -1, + 41, -1, -1, -1, -1, -1, -1, 48, 49, -1, -1, -1, -1, -1, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, + 41, -1, -1, -1, -1, -1, -1, -1, -1, 50, -1, -1, -1, -1, -1, -1, -1, -1, -1, 84, -1, 86, 87, 88, + 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 77, -1, -1, -1, -1, -1, -1, -1, -1, 86, 87, 88, + 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, -1, -1, -1, -1, -1, -1, -1, -1, 110, -1, -1, + -1, 114, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, -1, -1, -1, -1, -1, -1, -1, -1, 50, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, - -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, - -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, -1, 24, -1, 26, 27, -1, -1, -1, 31, 32, 33, - 34, 35, 36, 37, 38, 39, -1, 41, -1, -1, -1, -1, -1, -1, 48, -1, -1, -1, -1, -1, -1, -1, -1, -1, - -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, - -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 3, 4, 5, 6, 7, 8, -1, - -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 20, 21, 22, -1, -1, -1, -1, -1, -1, -1, -1, 31, 32, 33, - 34, 35, 36, 37, 38, 39, -1, 41, -1, -1, -1, -1, -1, -1, 48, 49, -1, -1, -1, -1, -1, 31, 32, 33, - 34, 35, 36, 37, 38, 39, 40, 41, -1, -1, -1, -1, -1, -1, -1, -1, 50, -1, -1, -1, -1, -1, -1, -1, - -1, -1, 84, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 77, -1, -1, -1, -1, - -1, -1, -1, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, -1, -1, -1, -1, - -1, -1, -1, -1, 110, -1, -1, -1, 114, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, -1, -1, -1, -1, - -1, -1, -1, -1, 50, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, - -1, -1, -1, -1, -1, -1, -1, 77, -1, -1, -1, -1, -1, -1, -1, -1, 86, 87, 88, 89, 90, 91, 92, 93, - 94, 95, 96, 97, 98, 99, 100, -1, -1, -1, -1, -1, -1, -1, -1, -1, 110, -1, -1, -1, 114 }; + 77, -1, -1, -1, -1, -1, -1, -1, -1, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, + -1, -1, -1, -1, -1, -1, -1, -1, -1, 110, -1, -1, -1, 114 }; /* YYSTOS[STATE-NUM] -- The (internal number of the) accessing symbol of state STATE-NUM. */ @@ -2867,114 +2869,114 @@ static const unsigned short yystos[] = { 0, 125, 126, 0, 127, 341, 342, 3, 4, 5, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 113, 128, 129, 130, 131, 132, 134, 135, 136, 137, 138, 140, 143, 158, 159, 160, 162, 163, 173, 174, 183, 185, 186, 188, 207, 208, 209, 210, 213, 214, 217, 222, 263, 293, 294, 295, 296, 298, 299, 300, 301, 303, 305, 306, 309, - 310, 311, 312, 313, 315, 316, 319, 320, 331, 332, 333, 353, 24, 25, 11, 43, 3, 4, 5, 6, 7, 8, 9, - 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, + 310, 311, 312, 313, 315, 316, 319, 320, 331, 332, 333, 353, 24, 25, 51, 11, 43, 3, 4, 5, 6, 7, 8, + 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 35, 36, 37, 38, 39, 41, 42, 43, 44, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 102, 104, 105, 106, 107, 109, 110, 111, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, - 332, 333, 364, 365, 366, 396, 397, 398, 399, 400, 304, 321, 3, 4, 5, 6, 7, 8, 41, 138, 143, 160, - 163, 295, 296, 301, 303, 309, 315, 3, 4, 5, 6, 7, 8, 102, 306, 3, 4, 5, 6, 7, 8, 20, 21, 22, 49, - 51, 184, 293, 295, 296, 300, 301, 303, 307, 139, 351, 352, 307, 102, 351, 43, 52, 129, 136, 137, - 163, 169, 186, 188, 207, 263, 309, 315, 45, 101, 102, 236, 237, 236, 236, 236, 107, 143, 309, 315, - 101, 341, 43, 214, 241, 244, 294, 299, 301, 303, 145, 301, 303, 305, 306, 300, 294, 295, 300, 341, - 300, 109, 138, 143, 160, 163, 174, 214, 296, 310, 319, 341, 9, 10, 83, 201, 264, 272, 274, 77, - 110, 114, 269, 334, 335, 336, 337, 340, 317, 341, 341, 23, 354, 102, 396, 392, 392, 63, 115, 190, - 382, 392, 393, 392, 9, 10, 107, 386, 293, 11, 307, 351, 307, 351, 294, 138, 160, 178, 179, 182, - 201, 272, 392, 104, 133, 293, 293, 101, 343, 344, 217, 221, 222, 296, 40, 50, 265, 268, 269, 308, - 310, 333, 102, 101, 105, 144, 145, 296, 300, 301, 303, 353, 265, 161, 101, 105, 164, 293, 293, - 351, 309, 201, 105, 246, 392, 215, 351, 297, 44, 47, 227, 228, 107, 300, 300, 300, 302, 307, 351, - 307, 351, 214, 241, 341, 318, 275, 218, 219, 221, 222, 223, 239, 283, 294, 296, 266, 104, 256, - 257, 259, 260, 201, 272, 281, 334, 345, 346, 345, 345, 335, 337, 307, 52, 355, 356, 357, 358, 359, - 126, 393, 101, 109, 112, 394, 395, 396, 103, 192, 194, 195, 197, 199, 189, 112, 101, 395, 108, - 388, 389, 387, 341, 175, 177, 269, 144, 175, 293, 307, 307, 176, 283, 294, 301, 303, 103, 295, - 301, 102, 101, 104, 353, 11, 53, 54, 63, 104, 106, 107, 109, 111, 115, 363, 364, 217, 221, 101, - 266, 264, 341, 147, 142, 3, 101, 146, 341, 145, 301, 303, 296, 101, 3, 4, 5, 6, 7, 8, 166, 167, - 305, 165, 164, 341, 293, 296, 247, 248, 293, 102, 103, 249, 250, 144, 301, 347, 348, 386, 245, - 376, 265, 144, 265, 293, 307, 313, 314, 339, 31, 32, 224, 225, 226, 343, 224, 285, 286, 287, 343, - 218, 223, 294, 101, 106, 258, 102, 390, 107, 108, 272, 353, 338, 184, 293, 112, 357, 106, 299, - 306, 361, 362, 103, 101, 112, 106, 382, 24, 26, 163, 295, 301, 303, 309, 326, 327, 330, 331, 25, - 49, 202, 188, 341, 372, 372, 372, 101, 176, 182, 101, 164, 175, 175, 101, 106, 107, 343, 101, 126, - 187, 3, 111, 111, 63, 115, 108, 112, 28, 29, 30, 103, 148, 149, 28, 29, 30, 36, 153, 154, 157, - 293, 105, 341, 145, 103, 106, 343, 316, 101, 305, 106, 397, 399, 392, 108, 83, 251, 253, 341, 300, - 230, 353, 249, 23, 84, 104, 105, 106, 109, 111, 123, 332, 333, 364, 365, 366, 370, 371, 378, 379, - 380, 382, 383, 386, 390, 101, 101, 101, 164, 313, 77, 110, 229, 107, 111, 288, 289, 105, 107, 343, - 267, 63, 109, 115, 367, 368, 370, 380, 391, 261, 366, 273, 339, 105, 112, 358, 300, 83, 360, 386, - 193, 191, 293, 293, 293, 319, 201, 270, 274, 269, 328, 270, 202, 63, 104, 106, 108, 109, 115, 370, - 373, 374, 108, 108, 101, 101, 177, 180, 103, 315, 112, 112, 341, 105, 156, 157, 106, 36, 155, 201, - 141, 341, 167, 104, 104, 170, 397, 248, 201, 201, 103, 216, 106, 254, 3, 231, 242, 108, 385, 381, - 384, 101, 227, 220, 290, 289, 12, 13, 14, 15, 284, 240, 268, 369, 368, 377, 106, 108, 107, 276, - 286, 299, 194, 341, 329, 282, 283, 196, 345, 307, 198, 270, 249, 270, 40, 41, 52, 101, 130, 135, - 137, 150, 151, 152, 158, 159, 173, 183, 186, 188, 211, 212, 213, 241, 263, 293, 294, 296, 309, - 315, 293, 341, 293, 153, 168, 393, 101, 238, 224, 83, 252, 315, 246, 372, 376, 372, 347, 249, 291, - 292, 249, 371, 101, 103, 374, 375, 262, 277, 307, 276, 104, 203, 204, 270, 280, 334, 203, 200, - 108, 101, 341, 137, 151, 152, 186, 188, 211, 263, 294, 309, 236, 101, 221, 241, 296, 201, 201, - 154, 201, 367, 46, 253, 270, 243, 112, 382, 112, 66, 233, 234, 108, 112, 367, 108, 367, 249, 205, - 108, 270, 203, 181, 135, 143, 171, 188, 212, 309, 315, 309, 343, 221, 223, 399, 255, 104, 232, - 112, 235, 230, 349, 350, 108, 206, 378, 271, 279, 351, 143, 171, 309, 236, 143, 201, 101, 343, - 102, 256, 18, 54, 55, 309, 320, 322, 323, 232, 353, 278, 378, 276, 31, 33, 44, 47, 102, 105, 144, - 172, 351, 143, 351, 101, 392, 320, 324, 269, 279, 399, 399, 392, 393, 146, 144, 351, 144, 172, - 103, 325, 307, 347, 103, 101, 172, 144, 146, 307, 393, 172, 101 }; + 332, 333, 364, 365, 366, 396, 397, 398, 399, 400, 304, 321, 3, 4, 5, 6, 7, 8, 38, 41, 138, 143, + 160, 163, 295, 296, 301, 303, 309, 315, 3, 4, 5, 6, 7, 8, 102, 306, 3, 4, 5, 6, 7, 8, 20, 21, 22, + 49, 51, 184, 293, 295, 296, 300, 301, 303, 307, 139, 351, 352, 307, 102, 351, 43, 52, 129, 136, + 137, 163, 169, 186, 188, 207, 263, 309, 315, 45, 101, 102, 236, 237, 236, 236, 236, 107, 143, 309, + 315, 101, 341, 43, 214, 241, 244, 294, 299, 301, 303, 145, 301, 303, 305, 306, 300, 294, 295, 300, + 341, 300, 109, 138, 143, 160, 163, 174, 214, 296, 310, 319, 341, 9, 10, 83, 201, 264, 272, 274, + 77, 110, 114, 269, 334, 335, 336, 337, 340, 317, 341, 341, 23, 354, 306, 102, 396, 392, 392, 63, + 115, 190, 382, 392, 393, 392, 9, 10, 107, 386, 293, 11, 307, 351, 307, 351, 294, 138, 160, 178, + 179, 182, 201, 272, 392, 104, 133, 293, 293, 101, 343, 344, 217, 221, 222, 296, 40, 50, 265, 268, + 269, 308, 310, 333, 102, 101, 105, 144, 145, 296, 300, 301, 303, 353, 265, 161, 101, 105, 164, + 293, 293, 351, 309, 201, 105, 246, 392, 215, 351, 297, 44, 47, 227, 228, 107, 300, 300, 300, 302, + 307, 351, 307, 351, 214, 241, 341, 318, 275, 218, 219, 221, 222, 223, 239, 283, 294, 296, 266, + 104, 256, 257, 259, 260, 201, 272, 281, 334, 345, 346, 345, 345, 335, 337, 307, 52, 355, 356, 357, + 358, 359, 102, 126, 393, 101, 109, 112, 394, 395, 396, 103, 192, 194, 195, 197, 199, 189, 112, + 101, 395, 108, 388, 389, 387, 341, 175, 177, 269, 144, 175, 293, 307, 307, 176, 283, 294, 301, + 303, 103, 295, 301, 102, 101, 104, 353, 11, 53, 54, 63, 104, 106, 107, 109, 111, 115, 363, 364, + 217, 221, 101, 266, 264, 341, 147, 142, 3, 101, 146, 341, 145, 301, 303, 296, 101, 3, 4, 5, 6, 7, + 8, 166, 167, 305, 165, 164, 341, 293, 296, 247, 248, 293, 102, 103, 249, 250, 144, 301, 347, 348, + 386, 245, 376, 265, 144, 265, 293, 307, 313, 314, 339, 31, 32, 224, 225, 226, 343, 224, 285, 286, + 287, 343, 218, 223, 294, 101, 106, 258, 102, 390, 107, 108, 272, 353, 338, 184, 293, 112, 357, + 106, 299, 306, 361, 362, 126, 103, 101, 112, 106, 382, 24, 26, 163, 295, 301, 303, 309, 326, 327, + 330, 331, 25, 49, 202, 188, 341, 372, 372, 372, 101, 176, 182, 101, 164, 175, 175, 101, 106, 107, + 343, 101, 126, 187, 3, 111, 111, 63, 115, 108, 112, 28, 29, 30, 103, 148, 149, 28, 29, 30, 36, + 153, 154, 157, 293, 105, 341, 145, 103, 106, 343, 316, 101, 305, 106, 397, 399, 392, 108, 83, 251, + 253, 341, 300, 230, 353, 249, 23, 84, 104, 105, 106, 109, 111, 123, 332, 333, 364, 365, 366, 370, + 371, 378, 379, 380, 382, 383, 386, 390, 101, 101, 101, 164, 313, 77, 110, 229, 107, 111, 288, 289, + 105, 107, 343, 267, 63, 109, 115, 367, 368, 370, 380, 391, 261, 366, 273, 339, 105, 112, 358, 300, + 83, 360, 386, 103, 193, 191, 293, 293, 293, 319, 201, 270, 274, 269, 328, 270, 202, 63, 104, 106, + 108, 109, 115, 370, 373, 374, 108, 108, 101, 101, 177, 180, 103, 315, 112, 112, 341, 105, 156, + 157, 106, 36, 155, 201, 141, 341, 167, 104, 104, 170, 397, 248, 201, 201, 103, 216, 106, 254, 3, + 231, 242, 108, 385, 381, 384, 101, 227, 220, 290, 289, 12, 13, 14, 15, 284, 240, 268, 369, 368, + 377, 106, 108, 107, 276, 286, 299, 194, 341, 329, 282, 283, 196, 345, 307, 198, 270, 249, 270, 40, + 41, 52, 101, 130, 135, 137, 150, 151, 152, 158, 159, 173, 183, 186, 188, 211, 212, 213, 241, 263, + 293, 294, 296, 309, 315, 293, 341, 293, 153, 168, 393, 101, 238, 224, 83, 252, 315, 246, 372, 376, + 372, 347, 249, 291, 292, 249, 371, 101, 103, 374, 375, 262, 277, 307, 276, 104, 203, 204, 270, + 280, 334, 203, 200, 108, 101, 341, 137, 151, 152, 186, 188, 211, 263, 294, 309, 236, 101, 221, + 241, 296, 201, 201, 154, 201, 367, 46, 253, 270, 243, 112, 382, 112, 66, 233, 234, 108, 112, 367, + 108, 367, 249, 205, 108, 270, 203, 181, 135, 143, 171, 188, 212, 309, 315, 309, 343, 221, 223, + 399, 255, 104, 232, 112, 235, 230, 349, 350, 108, 206, 378, 271, 279, 351, 143, 171, 309, 236, + 143, 201, 101, 343, 102, 256, 18, 54, 55, 309, 320, 322, 323, 232, 353, 278, 378, 276, 31, 33, 44, + 47, 102, 105, 144, 172, 351, 143, 351, 101, 392, 320, 324, 269, 279, 399, 399, 392, 393, 146, 144, + 351, 144, 172, 103, 325, 307, 347, 103, 101, 172, 144, 146, 307, 393, 172, 101 }; /* YYR1[YYN] -- Symbol number of symbol that rule YYN derives. */ static const unsigned short yyr1[] = { 0, 124, 125, 126, 127, 126, 128, 128, 128, 128, 128, 128, 128, 128, 128, 128, 128, 128, 128, 128, 128, 128, 128, 129, 129, 129, 129, 129, 129, 130, 130, - 131, 132, 133, 132, 134, 135, 135, 136, 136, 136, 137, 137, 139, 138, 141, 140, 140, 142, 140, - 140, 143, 143, 143, 144, 144, 144, 145, 145, 146, 146, 147, 148, 147, 147, 149, 149, 149, 150, - 150, 150, 150, 150, 150, 150, 150, 150, 150, 150, 150, 150, 150, 151, 151, 151, 151, 151, 151, - 152, 152, 152, 152, 153, 153, 154, 154, 154, 155, 155, 156, 156, 157, 157, 157, 158, 158, 158, - 159, 159, 161, 160, 162, 162, 163, 163, 163, 164, 165, 164, 166, 166, 167, 167, 168, 167, 169, - 170, 170, 171, 171, 171, 171, 172, 172, 173, 173, 174, 174, 174, 174, 174, 175, 176, 176, 177, - 178, 178, 180, 181, 179, 182, 183, 184, 184, 184, 184, 184, 184, 185, 187, 186, 189, 188, 190, - 191, 188, 192, 193, 192, 195, 196, 194, 197, 198, 194, 199, 200, 194, 201, 201, 202, 202, 203, - 203, 205, 204, 206, 206, 207, 207, 207, 207, 208, 209, 209, 209, 210, 210, 210, 211, 211, 211, - 212, 212, 212, 212, 213, 213, 213, 215, 216, 214, 217, 218, 220, 219, 221, 222, 223, 224, 225, - 225, 226, 226, 227, 227, 227, 228, 228, 229, 229, 229, 230, 230, 231, 232, 232, 232, 232, 233, - 233, 235, 234, 236, 236, 236, 237, 238, 238, 240, 239, 242, 243, 241, 245, 244, 246, 246, 247, - 247, 248, 248, 249, 250, 249, 251, 252, 251, 251, 251, 254, 255, 253, 256, 256, 258, 257, 259, - 257, 260, 257, 261, 262, 261, 263, 264, 265, 265, 266, 267, 266, 268, 269, 269, 270, 271, 270, - 272, 273, 272, 275, 274, 274, 276, 277, 278, 276, 276, 279, 279, 279, 279, 279, 279, 280, 280, - 281, 281, 282, 282, 283, 283, 284, 284, 284, 284, 285, 285, 287, 286, 288, 288, 290, 289, 291, - 292, 291, 293, 293, 294, 294, 294, 294, 294, 295, 295, 295, 296, 296, 296, 296, 296, 296, 297, - 296, 298, 299, 300, 302, 301, 304, 303, 305, 305, 305, 305, 305, 305, 305, 305, 305, 306, 306, - 306, 306, 306, 306, 307, 307, 308, 308, 308, 308, 309, 309, 310, 310, 310, 310, 311, 311, 311, - 311, 311, 312, 312, 312, 313, 313, 314, 314, 315, 317, 316, 318, 316, 319, 319, 319, 320, 320, - 321, 320, 320, 320, 322, 324, 323, 325, 323, 326, 328, 327, 329, 327, 330, 330, 330, 330, 330, - 330, 330, 331, 331, 332, 332, 332, 332, 332, 332, 332, 332, 332, 333, 333, 333, 333, 333, 333, - 333, 333, 333, 333, 333, 333, 333, 333, 333, 334, 334, 334, 334, 335, 336, 338, 337, 339, 339, - 340, 340, 342, 341, 344, 343, 346, 345, 348, 347, 350, 349, 352, 351, 353, 353, 354, 355, 355, - 356, 357, 357, 357, 357, 359, 358, 360, 360, 361, 361, 362, 362, 363, 363, 363, 363, 363, 363, - 363, 363, 363, 363, 363, 363, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, + 131, 132, 133, 132, 132, 134, 135, 135, 136, 136, 136, 137, 137, 139, 138, 141, 140, 140, 142, + 140, 140, 143, 143, 143, 144, 144, 144, 145, 145, 146, 146, 147, 148, 147, 147, 149, 149, 149, + 150, 150, 150, 150, 150, 150, 150, 150, 150, 150, 150, 150, 150, 150, 151, 151, 151, 151, 151, + 151, 152, 152, 152, 152, 153, 153, 154, 154, 154, 155, 155, 156, 156, 157, 157, 157, 158, 158, + 158, 159, 159, 161, 160, 162, 162, 163, 163, 163, 164, 165, 164, 166, 166, 167, 167, 168, 167, + 169, 170, 170, 171, 171, 171, 171, 172, 172, 173, 173, 174, 174, 174, 174, 174, 175, 176, 176, + 177, 178, 178, 180, 181, 179, 182, 183, 184, 184, 184, 184, 184, 184, 185, 187, 186, 189, 188, + 190, 191, 188, 192, 193, 192, 195, 196, 194, 197, 198, 194, 199, 200, 194, 201, 201, 202, 202, + 203, 203, 205, 204, 206, 206, 207, 207, 207, 207, 208, 209, 209, 209, 210, 210, 210, 211, 211, + 211, 212, 212, 212, 212, 213, 213, 213, 215, 216, 214, 217, 218, 220, 219, 221, 222, 223, 224, + 225, 225, 226, 226, 227, 227, 227, 228, 228, 229, 229, 229, 230, 230, 231, 232, 232, 232, 232, + 233, 233, 235, 234, 236, 236, 236, 237, 238, 238, 240, 239, 242, 243, 241, 245, 244, 246, 246, + 247, 247, 248, 248, 249, 250, 249, 251, 252, 251, 251, 251, 254, 255, 253, 256, 256, 258, 257, + 259, 257, 260, 257, 261, 262, 261, 263, 264, 265, 265, 266, 267, 266, 268, 269, 269, 270, 271, + 270, 272, 273, 272, 275, 274, 274, 276, 277, 278, 276, 276, 279, 279, 279, 279, 279, 279, 280, + 280, 281, 281, 282, 282, 283, 283, 284, 284, 284, 284, 285, 285, 287, 286, 288, 288, 290, 289, + 291, 292, 291, 293, 293, 294, 294, 294, 294, 294, 295, 295, 295, 296, 296, 296, 296, 296, 296, + 297, 296, 298, 299, 300, 302, 301, 304, 303, 305, 305, 305, 305, 305, 305, 305, 305, 305, 306, + 306, 306, 306, 306, 306, 307, 307, 308, 308, 308, 308, 309, 309, 310, 310, 310, 310, 311, 311, + 311, 311, 311, 312, 312, 312, 313, 313, 314, 314, 315, 317, 316, 318, 316, 319, 319, 319, 320, + 320, 321, 320, 320, 320, 322, 324, 323, 325, 323, 326, 328, 327, 329, 327, 330, 330, 330, 330, + 330, 330, 330, 331, 331, 332, 332, 332, 332, 332, 332, 332, 332, 332, 333, 333, 333, 333, 333, + 333, 333, 333, 333, 333, 333, 333, 333, 333, 333, 334, 334, 334, 334, 335, 336, 338, 337, 339, + 339, 340, 340, 342, 341, 344, 343, 346, 345, 348, 347, 350, 349, 352, 351, 353, 353, 354, 355, + 355, 356, 357, 357, 357, 357, 359, 358, 360, 360, 361, 361, 362, 362, 363, 363, 363, 363, 363, + 363, 363, 363, 363, 363, 363, 363, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, 364, - 364, 364, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, - 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 366, 366, 366, 366, 366, 366, - 366, 366, 366, 367, 367, 368, 368, 368, 369, 368, 368, 370, 370, 371, 371, 371, 371, 371, 371, - 371, 371, 371, 371, 372, 372, 373, 373, 373, 373, 374, 374, 374, 375, 375, 376, 376, 377, 377, - 378, 378, 379, 379, 379, 381, 380, 382, 382, 384, 383, 385, 383, 387, 386, 388, 386, 389, 386, - 391, 390, 392, 392, 393, 393, 394, 394, 395, 395, 396, 396, 396, 396, 396, 396, 396, 396, 396, - 396, 396, 396, 396, 396, 396, 396, 396, 397, 398, 398, 399, 400, 400, 400 }; + 364, 364, 364, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, + 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 365, 366, 366, 366, 366, 366, + 366, 366, 366, 366, 367, 367, 368, 368, 368, 369, 368, 368, 370, 370, 371, 371, 371, 371, 371, + 371, 371, 371, 371, 371, 372, 372, 373, 373, 373, 373, 374, 374, 374, 375, 375, 376, 376, 377, + 377, 378, 378, 379, 379, 379, 381, 380, 382, 382, 384, 383, 385, 383, 387, 386, 388, 386, 389, + 386, 391, 390, 392, 392, 393, 393, 394, 394, 395, 395, 396, 396, 396, 396, 396, 396, 396, 396, + 396, 396, 396, 396, 396, 396, 396, 396, 396, 397, 398, 398, 399, 400, 400, 400 }; /* YYR2[YYN] -- Number of symbols on the right hand side of rule YYN. */ static const unsigned char yyr2[] = { 0, 2, 1, 0, 0, 4, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 2, 1, 2, 2, 2, 2, 2, 2, 5, 4, 5, 4, 0, 6, 5, 1, 2, 4, 3, 5, 4, 5, 0, 5, 0, 7, 4, 0, 5, 2, 1, 1, 1, - 3, 4, 2, 1, 1, 0, 1, 0, 0, 4, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 2, 2, 2, 2, 2, - 2, 3, 4, 3, 4, 1, 4, 2, 4, 4, 0, 1, 0, 1, 1, 1, 1, 5, 3, 6, 4, 5, 0, 5, 4, 3, 1, 2, 2, 0, 0, 3, 1, - 3, 0, 2, 0, 5, 6, 2, 1, 5, 6, 3, 4, 5, 3, 1, 2, 5, 5, 6, 5, 6, 2, 0, 3, 2, 1, 1, 0, 0, 8, 1, 3, 1, - 2, 2, 2, 3, 3, 4, 0, 8, 0, 5, 0, 0, 7, 1, 0, 4, 0, 0, 5, 0, 0, 5, 0, 0, 6, 0, 1, 1, 1, 0, 1, 0, 3, - 1, 2, 2, 2, 2, 2, 3, 4, 2, 3, 2, 3, 4, 2, 4, 5, 3, 1, 1, 2, 1, 2, 3, 0, 0, 7, 2, 2, 0, 6, 2, 1, 2, - 7, 0, 1, 1, 1, 0, 2, 1, 1, 1, 0, 1, 1, 0, 2, 1, 0, 2, 2, 2, 0, 1, 0, 3, 3, 1, 1, 6, 0, 6, 0, 6, 0, - 0, 8, 0, 5, 0, 2, 1, 3, 3, 3, 0, 0, 2, 1, 0, 4, 3, 1, 0, 0, 6, 0, 1, 0, 3, 0, 2, 0, 4, 1, 0, 4, 4, - 2, 0, 2, 0, 0, 4, 2, 0, 1, 3, 0, 6, 3, 0, 5, 0, 3, 1, 0, 0, 0, 7, 1, 0, 2, 2, 3, 3, 2, 1, 2, 1, 2, - 0, 1, 2, 4, 1, 1, 1, 1, 0, 1, 0, 2, 1, 2, 0, 5, 0, 0, 2, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 3, - 3, 3, 0, 5, 1, 1, 1, 0, 5, 0, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 3, 1, 1, 1, 1, 2, - 3, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 0, 3, 0, 4, 1, 3, 4, 1, 1, 0, 4, 2, 2, 2, 0, - 3, 0, 4, 2, 0, 3, 0, 4, 1, 1, 1, 1, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 0, 4, 0, 1, 1, 2, 0, 2, 0, 2, 0, 2, 0, 2, 0, 2, 0, 2, 0, - 2, 4, 2, 1, 3, 0, 1, 2, 3, 0, 3, 0, 1, 1, 2, 1, 3, 2, 2, 3, 3, 1, 1, 1, 1, 2, 2, 2, 1, 1, 1, 1, 1, + 2, 1, 2, 2, 2, 2, 2, 2, 5, 4, 5, 4, 0, 6, 6, 5, 1, 2, 4, 3, 5, 4, 5, 0, 5, 0, 7, 4, 0, 5, 2, 1, 1, + 1, 3, 4, 2, 1, 1, 0, 1, 0, 0, 4, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 2, 2, 2, 2, + 2, 2, 3, 4, 3, 4, 1, 4, 2, 4, 4, 0, 1, 0, 1, 1, 1, 1, 5, 3, 6, 4, 5, 0, 5, 4, 3, 1, 2, 2, 0, 0, 3, + 1, 3, 0, 2, 0, 5, 6, 2, 1, 5, 6, 3, 4, 5, 3, 1, 2, 5, 5, 6, 5, 6, 2, 0, 3, 2, 1, 1, 0, 0, 8, 1, 3, + 1, 2, 2, 2, 3, 3, 4, 0, 8, 0, 5, 0, 0, 7, 1, 0, 4, 0, 0, 5, 0, 0, 5, 0, 0, 6, 0, 1, 1, 1, 0, 1, 0, + 3, 1, 2, 2, 2, 2, 2, 3, 4, 2, 3, 2, 3, 4, 2, 4, 5, 3, 1, 1, 2, 1, 2, 3, 0, 0, 7, 2, 2, 0, 6, 2, 1, + 2, 7, 0, 1, 1, 1, 0, 2, 1, 1, 1, 0, 1, 1, 0, 2, 1, 0, 2, 2, 2, 0, 1, 0, 3, 3, 1, 1, 6, 0, 6, 0, 6, + 0, 0, 8, 0, 5, 0, 2, 1, 3, 3, 3, 0, 0, 2, 1, 0, 4, 3, 1, 0, 0, 6, 0, 1, 0, 3, 0, 2, 0, 4, 1, 0, 4, + 4, 2, 0, 2, 0, 0, 4, 2, 0, 1, 3, 0, 6, 3, 0, 5, 0, 3, 1, 0, 0, 0, 7, 1, 0, 2, 2, 3, 3, 2, 1, 2, 1, + 2, 0, 1, 2, 4, 1, 1, 1, 1, 0, 1, 0, 2, 1, 2, 0, 5, 0, 0, 2, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, + 3, 3, 3, 0, 5, 1, 1, 1, 0, 5, 0, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 3, 1, 1, 1, 1, + 2, 3, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 0, 3, 0, 4, 1, 3, 4, 1, 1, 0, 4, 2, 2, 2, + 0, 3, 0, 4, 2, 0, 3, 0, 4, 1, 1, 1, 1, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 0, 4, 0, 1, 1, 2, 0, 2, 0, 2, 0, 2, 0, 2, 0, 2, 0, 2, + 0, 2, 4, 2, 1, 3, 0, 1, 2, 3, 0, 3, 0, 1, 1, 2, 1, 3, 2, 2, 3, 3, 1, 1, 1, 1, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 2, 1, 1, 1, 0, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 2, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 0, 2, 0, 2, 1, 1, 1, 1, 1, 0, 4, 1, 1, 0, 4, 0, 5, 0, 4, 0, 4, 0, 4, 0, 4, 0, 2, 0, 2, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 3, 3, 4, 3, 1, 1, 1 }; + 1, 1, 1, 1, 1, 2, 1, 1, 1, 0, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 2, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 0, 2, 0, 2, 1, 1, 1, 1, 1, 0, 4, 1, 1, 0, 4, 0, 5, 0, 4, 0, 4, 0, 4, 0, 4, 0, 2, 0, 2, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 3, 3, 4, 3, 1, 1, 1 }; /* YYDPREC[RULE-NUM] -- Dynamic precedence of rule #RULE-NUM (0 if none). */ static const unsigned char yydprec[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, @@ -2997,7 +2999,7 @@ static const unsigned char yydprec[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; /* YYMERGER[RULE-NUM] -- Index of merging function for rule #RULE-NUM. */ static const unsigned char yymerger[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, @@ -3020,7 +3022,7 @@ static const unsigned char yymerger[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; /* YYIMMEDIATE[RULE-NUM] -- True iff rule #RULE-NUM is not to be deferred, as in the case of predicates. */ @@ -3044,7 +3046,7 @@ static const yybool yyimmediate[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; /* YYCONFLP[YYPACT[STATE-NUM]] -- Pointer into YYCONFL of start of list of conflicting reductions corresponding to action entry for @@ -3052,23 +3054,23 @@ static const yybool yyimmediate[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, yyconfl is terminated by a rule number of 0. */ static const unsigned char yyconflp[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 5, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 237, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 239, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 235, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 235, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 237, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 229, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 239, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 231, 0, 0, 0, 0, 233, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 229, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 231, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 233, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, @@ -3194,13 +3196,13 @@ static const unsigned char yyconflp[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33, 35, 37, 39, 41, 43, 45, + 47, 49, 51, 53, 55, 57, 59, 61, 63, 65, 67, 0, 69, 71, 73, 75, 77, 79, 0, 81, 83, 85, 87, 0, 0, + 89, 91, 93, 95, 97, 99, 101, 103, 105, 107, 109, 111, 113, 115, 117, 119, 121, 123, 125, 127, 129, + 131, 133, 135, 137, 139, 141, 143, 145, 147, 149, 151, 153, 155, 157, 159, 0, 161, 0, 163, 165, + 167, 169, 171, 173, 175, 177, 179, 181, 183, 185, 187, 189, 191, 0, 193, 0, 0, 195, 197, 199, 0, + 201, 203, 205, 0, 207, 209, 211, 213, 215, 217, 219, 221, 223, 225, 227, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33, 35, 37, - 39, 41, 43, 45, 47, 49, 51, 53, 55, 57, 59, 61, 63, 65, 67, 0, 69, 71, 73, 75, 77, 79, 0, 81, 83, - 85, 87, 0, 0, 89, 91, 93, 95, 97, 99, 101, 103, 105, 107, 109, 111, 113, 115, 117, 119, 121, 123, - 125, 127, 129, 131, 133, 135, 137, 139, 141, 143, 145, 147, 149, 151, 153, 155, 157, 159, 0, 161, - 0, 163, 165, 167, 169, 171, 173, 175, 177, 179, 181, 183, 185, 187, 189, 191, 0, 193, 0, 0, 195, - 197, 199, 0, 201, 203, 205, 0, 207, 209, 211, 213, 215, 217, 219, 221, 223, 225, 227, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, @@ -3251,21 +3253,22 @@ static const unsigned char yyconflp[] = { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0 }; /* YYCONFL[I] -- lists of conflicting rule numbers, each terminated by 0, pointed into by YYCONFLP. */ -static const short yyconfl[] = { 0, 407, 0, 407, 0, 407, 0, 320, 0, 625, 0, 625, 0, 625, 0, 625, 0, - 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, - 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, - 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, - 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, - 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, - 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, - 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, - 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, - 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 625, 0, 303, 0, 303, 0, - 303, 0, 313, 0, 407, 0, 407, 0 }; +static const short yyconfl[] = { 0, 408, 0, 408, 0, 408, 0, 321, 0, 626, 0, 626, 0, 626, 0, 626, 0, + 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, + 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, + 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, + 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, + 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, + 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, + 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, + 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, + 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 626, 0, 304, 0, 304, 0, + 304, 0, 314, 0, 408, 0, 408, 0 }; /* Error token number */ #define YYTERROR 1 @@ -3693,7 +3696,7 @@ static YYRESULTTAG yyuserAction( break; - case 43: + case 44: { pushType(); @@ -3701,7 +3704,7 @@ static YYRESULTTAG yyuserAction( break; - case 44: + case 45: { const char* name = (currentClass ? currentClass->Name : NULL); @@ -3717,7 +3720,7 @@ static YYRESULTTAG yyuserAction( break; - case 45: + case 46: { start_class((((yyGLRStackItem const*)yyvsp)[YYFILL(-2)].yystate.yysemantics.yysval.str), @@ -3728,7 +3731,7 @@ static YYRESULTTAG yyuserAction( break; - case 47: + case 48: { start_class((((yyGLRStackItem const*)yyvsp)[YYFILL(-1)].yystate.yysemantics.yysval.str), @@ -3739,7 +3742,7 @@ static YYRESULTTAG yyuserAction( break; - case 48: + case 49: { start_class( @@ -3748,7 +3751,7 @@ static YYRESULTTAG yyuserAction( break; - case 50: + case 51: { start_class( @@ -3757,7 +3760,7 @@ static YYRESULTTAG yyuserAction( break; - case 51: + case 52: { ((*yyvalp).integer) = 0; @@ -3765,7 +3768,7 @@ static YYRESULTTAG yyuserAction( break; - case 52: + case 53: { ((*yyvalp).integer) = 1; @@ -3773,7 +3776,7 @@ static YYRESULTTAG yyuserAction( break; - case 53: + case 54: { ((*yyvalp).integer) = 2; @@ -3781,7 +3784,7 @@ static YYRESULTTAG yyuserAction( break; - case 54: + case 55: { ((*yyvalp).str) = @@ -3791,7 +3794,7 @@ static YYRESULTTAG yyuserAction( break; - case 55: + case 56: { ((*yyvalp).str) = vtkstrcat3( @@ -3801,7 +3804,7 @@ static YYRESULTTAG yyuserAction( break; - case 59: + case 60: { ((*yyvalp).integer) = 0; @@ -3809,7 +3812,7 @@ static YYRESULTTAG yyuserAction( break; - case 60: + case 61: { ((*yyvalp).integer) = @@ -3819,7 +3822,7 @@ static YYRESULTTAG yyuserAction( break; - case 62: + case 63: { startSig(); @@ -3831,7 +3834,7 @@ static YYRESULTTAG yyuserAction( break; - case 65: + case 66: { access_level = VTK_ACCESS_PUBLIC; @@ -3839,7 +3842,7 @@ static YYRESULTTAG yyuserAction( break; - case 66: + case 67: { access_level = VTK_ACCESS_PRIVATE; @@ -3847,7 +3850,7 @@ static YYRESULTTAG yyuserAction( break; - case 67: + case 68: { access_level = VTK_ACCESS_PROTECTED; @@ -3855,7 +3858,7 @@ static YYRESULTTAG yyuserAction( break; - case 91: + case 92: { output_friend_function(); @@ -3863,7 +3866,7 @@ static YYRESULTTAG yyuserAction( break; - case 94: + case 95: { add_base_class(currentClass, @@ -3873,7 +3876,7 @@ static YYRESULTTAG yyuserAction( break; - case 95: + case 96: { add_base_class(currentClass, @@ -3885,7 +3888,7 @@ static YYRESULTTAG yyuserAction( break; - case 96: + case 97: { add_base_class(currentClass, @@ -3897,7 +3900,7 @@ static YYRESULTTAG yyuserAction( break; - case 97: + case 98: { ((*yyvalp).integer) = 0; @@ -3905,7 +3908,7 @@ static YYRESULTTAG yyuserAction( break; - case 98: + case 99: { ((*yyvalp).integer) = VTK_PARSE_VIRTUAL; @@ -3913,7 +3916,7 @@ static YYRESULTTAG yyuserAction( break; - case 99: + case 100: { ((*yyvalp).integer) = access_level; @@ -3921,7 +3924,7 @@ static YYRESULTTAG yyuserAction( break; - case 101: + case 102: { ((*yyvalp).integer) = VTK_ACCESS_PUBLIC; @@ -3929,7 +3932,7 @@ static YYRESULTTAG yyuserAction( break; - case 102: + case 103: { ((*yyvalp).integer) = VTK_ACCESS_PRIVATE; @@ -3937,7 +3940,7 @@ static YYRESULTTAG yyuserAction( break; - case 103: + case 104: { ((*yyvalp).integer) = VTK_ACCESS_PROTECTED; @@ -3945,7 +3948,7 @@ static YYRESULTTAG yyuserAction( break; - case 109: + case 110: { pushType(); @@ -3953,7 +3956,7 @@ static YYRESULTTAG yyuserAction( break; - case 110: + case 111: { popType(); @@ -3969,7 +3972,7 @@ static YYRESULTTAG yyuserAction( break; - case 111: + case 112: { start_enum((((yyGLRStackItem const*)yyvsp)[YYFILL(-1)].yystate.yysemantics.yysval.str), @@ -3983,7 +3986,7 @@ static YYRESULTTAG yyuserAction( break; - case 112: + case 113: { start_enum(NULL, @@ -3997,7 +4000,7 @@ static YYRESULTTAG yyuserAction( break; - case 113: + case 114: { ((*yyvalp).integer) = 0; @@ -4005,7 +4008,7 @@ static YYRESULTTAG yyuserAction( break; - case 114: + case 115: { ((*yyvalp).integer) = 1; @@ -4013,7 +4016,7 @@ static YYRESULTTAG yyuserAction( break; - case 115: + case 116: { ((*yyvalp).integer) = 1; @@ -4021,7 +4024,7 @@ static YYRESULTTAG yyuserAction( break; - case 116: + case 117: { ((*yyvalp).integer) = 0; @@ -4029,7 +4032,7 @@ static YYRESULTTAG yyuserAction( break; - case 117: + case 118: { pushType(); @@ -4037,7 +4040,7 @@ static YYRESULTTAG yyuserAction( break; - case 118: + case 119: { ((*yyvalp).integer) = getType(); @@ -4046,7 +4049,7 @@ static YYRESULTTAG yyuserAction( break; - case 122: + case 123: { closeComment(); @@ -4056,7 +4059,7 @@ static YYRESULTTAG yyuserAction( break; - case 123: + case 124: { postSig("="); @@ -4066,7 +4069,7 @@ static YYRESULTTAG yyuserAction( break; - case 124: + case 125: { chopSig(); @@ -4077,7 +4080,7 @@ static YYRESULTTAG yyuserAction( break; - case 147: + case 148: { pushFunction(); @@ -4086,7 +4089,7 @@ static YYRESULTTAG yyuserAction( break; - case 148: + case 149: { postSig(")"); @@ -4094,7 +4097,7 @@ static YYRESULTTAG yyuserAction( break; - case 149: + case 150: { ((*yyvalp).integer) = (VTK_PARSE_FUNCTION | @@ -4104,7 +4107,7 @@ static YYRESULTTAG yyuserAction( break; - case 150: + case 151: { ValueInfo* item = (ValueInfo*)malloc(sizeof(ValueInfo)); @@ -4143,7 +4146,7 @@ static YYRESULTTAG yyuserAction( break; - case 151: + case 152: { add_using((((yyGLRStackItem const*)yyvsp)[YYFILL(-1)].yystate.yysemantics.yysval.str), 0); @@ -4151,7 +4154,7 @@ static YYRESULTTAG yyuserAction( break; - case 153: + case 154: { ((*yyvalp).str) = (((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str); @@ -4159,7 +4162,7 @@ static YYRESULTTAG yyuserAction( break; - case 154: + case 155: { ((*yyvalp).str) = @@ -4169,7 +4172,7 @@ static YYRESULTTAG yyuserAction( break; - case 155: + case 156: { ((*yyvalp).str) = @@ -4179,7 +4182,7 @@ static YYRESULTTAG yyuserAction( break; - case 156: + case 157: { ((*yyvalp).str) = @@ -4190,7 +4193,7 @@ static YYRESULTTAG yyuserAction( break; - case 157: + case 158: { ((*yyvalp).str) = @@ -4201,7 +4204,7 @@ static YYRESULTTAG yyuserAction( break; - case 158: + case 159: { add_using((((yyGLRStackItem const*)yyvsp)[YYFILL(-1)].yystate.yysemantics.yysval.str), 1); @@ -4209,7 +4212,7 @@ static YYRESULTTAG yyuserAction( break; - case 159: + case 160: { markSig(); @@ -4217,7 +4220,7 @@ static YYRESULTTAG yyuserAction( break; - case 160: + case 161: { ValueInfo* item = (ValueInfo*)malloc(sizeof(ValueInfo)); @@ -4247,7 +4250,7 @@ static YYRESULTTAG yyuserAction( break; - case 161: + case 162: { postSig("template<> "); @@ -4256,7 +4259,7 @@ static YYRESULTTAG yyuserAction( break; - case 163: + case 164: { postSig("template<"); @@ -4268,7 +4271,7 @@ static YYRESULTTAG yyuserAction( break; - case 164: + case 165: { chopSig(); @@ -4283,7 +4286,7 @@ static YYRESULTTAG yyuserAction( break; - case 167: + case 168: { chopSig(); @@ -4294,7 +4297,7 @@ static YYRESULTTAG yyuserAction( break; - case 169: + case 170: { markSig(); @@ -4302,7 +4305,7 @@ static YYRESULTTAG yyuserAction( break; - case 170: + case 171: { add_template_parameter(getType(), @@ -4311,7 +4314,7 @@ static YYRESULTTAG yyuserAction( break; - case 172: + case 173: { markSig(); @@ -4319,7 +4322,7 @@ static YYRESULTTAG yyuserAction( break; - case 173: + case 174: { add_template_parameter(0, @@ -4328,7 +4331,7 @@ static YYRESULTTAG yyuserAction( break; - case 175: + case 176: { pushTemplate(); @@ -4337,7 +4340,7 @@ static YYRESULTTAG yyuserAction( break; - case 176: + case 177: { int i; @@ -4351,7 +4354,7 @@ static YYRESULTTAG yyuserAction( break; - case 178: + case 179: { ((*yyvalp).integer) = 0; @@ -4359,7 +4362,7 @@ static YYRESULTTAG yyuserAction( break; - case 179: + case 180: { postSig("..."); @@ -4368,7 +4371,7 @@ static YYRESULTTAG yyuserAction( break; - case 180: + case 181: { postSig("class "); @@ -4376,7 +4379,7 @@ static YYRESULTTAG yyuserAction( break; - case 181: + case 182: { postSig("typename "); @@ -4384,7 +4387,7 @@ static YYRESULTTAG yyuserAction( break; - case 184: + case 185: { postSig("="); @@ -4393,7 +4396,7 @@ static YYRESULTTAG yyuserAction( break; - case 185: + case 186: { int i = currentTemplate->NumberOfParameters - 1; @@ -4404,7 +4407,7 @@ static YYRESULTTAG yyuserAction( break; - case 188: + case 189: { output_function(); @@ -4412,7 +4415,7 @@ static YYRESULTTAG yyuserAction( break; - case 189: + case 190: { output_function(); @@ -4420,7 +4423,7 @@ static YYRESULTTAG yyuserAction( break; - case 190: + case 191: { reject_function(); @@ -4428,7 +4431,7 @@ static YYRESULTTAG yyuserAction( break; - case 191: + case 192: { reject_function(); @@ -4436,7 +4439,7 @@ static YYRESULTTAG yyuserAction( break; - case 199: + case 200: { output_function(); @@ -4444,7 +4447,7 @@ static YYRESULTTAG yyuserAction( break; - case 209: + case 210: { postSig("("); @@ -4454,7 +4457,7 @@ static YYRESULTTAG yyuserAction( break; - case 210: + case 211: { postSig(")"); @@ -4462,7 +4465,7 @@ static YYRESULTTAG yyuserAction( break; - case 211: + case 212: { postSig(";"); @@ -4475,7 +4478,7 @@ static YYRESULTTAG yyuserAction( break; - case 212: + case 213: { ((*yyvalp).str) = copySig(); @@ -4483,7 +4486,7 @@ static YYRESULTTAG yyuserAction( break; - case 213: + case 214: { postSig(";"); @@ -4496,7 +4499,7 @@ static YYRESULTTAG yyuserAction( break; - case 214: + case 215: { postSig("("); @@ -4506,7 +4509,7 @@ static YYRESULTTAG yyuserAction( break; - case 215: + case 216: { postSig(")"); @@ -4514,7 +4517,7 @@ static YYRESULTTAG yyuserAction( break; - case 216: + case 217: { chopSig(); @@ -4525,7 +4528,7 @@ static YYRESULTTAG yyuserAction( break; - case 217: + case 218: { markSig(); @@ -4534,7 +4537,7 @@ static YYRESULTTAG yyuserAction( break; - case 218: + case 219: { postSig(";"); @@ -4547,7 +4550,7 @@ static YYRESULTTAG yyuserAction( break; - case 222: + case 223: { postSig(" const"); @@ -4556,7 +4559,7 @@ static YYRESULTTAG yyuserAction( break; - case 223: + case 224: { postSig(" volatile"); @@ -4564,7 +4567,7 @@ static YYRESULTTAG yyuserAction( break; - case 225: + case 226: { chopSig(); @@ -4572,7 +4575,7 @@ static YYRESULTTAG yyuserAction( break; - case 227: + case 228: { postSig(" noexcept"); @@ -4580,7 +4583,7 @@ static YYRESULTTAG yyuserAction( break; - case 228: + case 229: { postSig(" throw"); @@ -4588,7 +4591,7 @@ static YYRESULTTAG yyuserAction( break; - case 230: + case 231: { postSig("&"); @@ -4596,7 +4599,7 @@ static YYRESULTTAG yyuserAction( break; - case 231: + case 232: { postSig("&&"); @@ -4604,7 +4607,7 @@ static YYRESULTTAG yyuserAction( break; - case 234: + case 235: { postSig(" "); @@ -4623,7 +4626,7 @@ static YYRESULTTAG yyuserAction( break; - case 236: + case 237: { currentFunction->IsDeleted = 1; @@ -4631,7 +4634,7 @@ static YYRESULTTAG yyuserAction( break; - case 238: + case 239: { postSig(" = 0"); @@ -4644,7 +4647,7 @@ static YYRESULTTAG yyuserAction( break; - case 241: + case 242: { postSig(" -> "); @@ -4654,7 +4657,7 @@ static YYRESULTTAG yyuserAction( break; - case 242: + case 243: { chopSig(); @@ -4663,7 +4666,7 @@ static YYRESULTTAG yyuserAction( break; - case 249: + case 250: { postSig("("); @@ -4672,7 +4675,7 @@ static YYRESULTTAG yyuserAction( break; - case 250: + case 251: { postSig(")"); @@ -4680,7 +4683,7 @@ static YYRESULTTAG yyuserAction( break; - case 251: + case 252: { closeSig(); @@ -4709,7 +4712,7 @@ static YYRESULTTAG yyuserAction( break; - case 252: + case 253: { openSig(); @@ -4717,7 +4720,7 @@ static YYRESULTTAG yyuserAction( break; - case 253: + case 254: { postSig(";"); @@ -4727,7 +4730,7 @@ static YYRESULTTAG yyuserAction( break; - case 254: + case 255: { pushType(); @@ -4736,7 +4739,7 @@ static YYRESULTTAG yyuserAction( break; - case 255: + case 256: { postSig(")"); @@ -4745,7 +4748,7 @@ static YYRESULTTAG yyuserAction( break; - case 263: + case 264: { clearType(); @@ -4754,7 +4757,7 @@ static YYRESULTTAG yyuserAction( break; - case 265: + case 266: { clearType(); @@ -4763,7 +4766,7 @@ static YYRESULTTAG yyuserAction( break; - case 266: + case 267: { clearType(); @@ -4773,7 +4776,7 @@ static YYRESULTTAG yyuserAction( break; - case 268: + case 269: { currentFunction->IsVariadic = 1; @@ -4782,7 +4785,7 @@ static YYRESULTTAG yyuserAction( break; - case 269: + case 270: { currentFunction->IsVariadic = 1; @@ -4791,7 +4794,7 @@ static YYRESULTTAG yyuserAction( break; - case 270: + case 271: { markSig(); @@ -4799,7 +4802,7 @@ static YYRESULTTAG yyuserAction( break; - case 271: + case 272: { ValueInfo* param = (ValueInfo*)malloc(sizeof(ValueInfo)); @@ -4819,7 +4822,7 @@ static YYRESULTTAG yyuserAction( break; - case 272: + case 273: { int i = currentFunction->NumberOfParameters - 1; @@ -4831,7 +4834,7 @@ static YYRESULTTAG yyuserAction( break; - case 273: + case 274: { clearVarValue(); @@ -4839,7 +4842,7 @@ static YYRESULTTAG yyuserAction( break; - case 275: + case 276: { postSig("="); @@ -4849,7 +4852,7 @@ static YYRESULTTAG yyuserAction( break; - case 276: + case 277: { chopSig(); @@ -4858,7 +4861,7 @@ static YYRESULTTAG yyuserAction( break; - case 277: + case 278: { clearVarValue(); @@ -4867,7 +4870,7 @@ static YYRESULTTAG yyuserAction( break; - case 278: + case 279: { chopSig(); @@ -4876,7 +4879,7 @@ static YYRESULTTAG yyuserAction( break; - case 279: + case 280: { clearVarValue(); @@ -4886,7 +4889,7 @@ static YYRESULTTAG yyuserAction( break; - case 280: + case 281: { chopSig(); @@ -4896,7 +4899,7 @@ static YYRESULTTAG yyuserAction( break; - case 281: + case 282: { postSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -4904,7 +4907,7 @@ static YYRESULTTAG yyuserAction( break; - case 282: + case 283: { postSig(", "); @@ -4912,7 +4915,7 @@ static YYRESULTTAG yyuserAction( break; - case 285: + case 286: { unsigned int attributes = getAttributes(); @@ -4986,7 +4989,7 @@ static YYRESULTTAG yyuserAction( break; - case 289: + case 290: { postSig(", "); @@ -4994,7 +4997,7 @@ static YYRESULTTAG yyuserAction( break; - case 292: + case 293: { setTypePtr(0); @@ -5002,7 +5005,7 @@ static YYRESULTTAG yyuserAction( break; - case 293: + case 294: { setTypePtr((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer)); @@ -5010,7 +5013,7 @@ static YYRESULTTAG yyuserAction( break; - case 294: + case 295: { if ((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer) == @@ -5028,7 +5031,7 @@ static YYRESULTTAG yyuserAction( break; - case 295: + case 296: { postSig(")"); @@ -5036,7 +5039,7 @@ static YYRESULTTAG yyuserAction( break; - case 296: + case 297: { const char* scope = getScope(); @@ -5062,7 +5065,7 @@ static YYRESULTTAG yyuserAction( break; - case 297: + case 298: { ((*yyvalp).integer) = @@ -5071,7 +5074,7 @@ static YYRESULTTAG yyuserAction( break; - case 298: + case 299: { postSig(")"); @@ -5079,7 +5082,7 @@ static YYRESULTTAG yyuserAction( break; - case 299: + case 300: { const char* scope = getScope(); @@ -5105,7 +5108,7 @@ static YYRESULTTAG yyuserAction( break; - case 300: + case 301: { postSig("("); @@ -5115,7 +5118,7 @@ static YYRESULTTAG yyuserAction( break; - case 301: + case 302: { ((*yyvalp).integer) = @@ -5124,7 +5127,7 @@ static YYRESULTTAG yyuserAction( break; - case 302: + case 303: { postSig("("); @@ -5135,7 +5138,7 @@ static YYRESULTTAG yyuserAction( break; - case 303: + case 304: { ((*yyvalp).integer) = 0; @@ -5143,7 +5146,7 @@ static YYRESULTTAG yyuserAction( break; - case 304: + case 305: { pushFunction(); @@ -5152,7 +5155,7 @@ static YYRESULTTAG yyuserAction( break; - case 305: + case 306: { postSig(")"); @@ -5160,7 +5163,7 @@ static YYRESULTTAG yyuserAction( break; - case 306: + case 307: { ((*yyvalp).integer) = VTK_PARSE_FUNCTION; @@ -5169,7 +5172,7 @@ static YYRESULTTAG yyuserAction( break; - case 307: + case 308: { ((*yyvalp).integer) = VTK_PARSE_ARRAY; @@ -5177,7 +5180,7 @@ static YYRESULTTAG yyuserAction( break; - case 310: + case 311: { currentFunction->IsConst = 1; @@ -5185,7 +5188,7 @@ static YYRESULTTAG yyuserAction( break; - case 315: + case 316: { ((*yyvalp).integer) = add_indirection( @@ -5195,7 +5198,7 @@ static YYRESULTTAG yyuserAction( break; - case 317: + case 318: { ((*yyvalp).integer) = add_indirection( @@ -5205,7 +5208,7 @@ static YYRESULTTAG yyuserAction( break; - case 318: + case 319: { clearVarName(); @@ -5214,7 +5217,7 @@ static YYRESULTTAG yyuserAction( break; - case 320: + case 321: { setVarName((((yyGLRStackItem const*)yyvsp)[YYFILL(-1)].yystate.yysemantics.yysval.str)); @@ -5222,7 +5225,7 @@ static YYRESULTTAG yyuserAction( break; - case 321: + case 322: { setVarName((((yyGLRStackItem const*)yyvsp)[YYFILL(-3)].yystate.yysemantics.yysval.str)); @@ -5230,7 +5233,7 @@ static YYRESULTTAG yyuserAction( break; - case 326: + case 327: { clearArray(); @@ -5238,7 +5241,7 @@ static YYRESULTTAG yyuserAction( break; - case 328: + case 329: { clearArray(); @@ -5246,7 +5249,7 @@ static YYRESULTTAG yyuserAction( break; - case 332: + case 333: { postSig("["); @@ -5254,7 +5257,7 @@ static YYRESULTTAG yyuserAction( break; - case 333: + case 334: { postSig("]"); @@ -5262,7 +5265,7 @@ static YYRESULTTAG yyuserAction( break; - case 334: + case 335: { pushArraySize(""); @@ -5270,7 +5273,7 @@ static YYRESULTTAG yyuserAction( break; - case 335: + case 336: { markSig(); @@ -5278,7 +5281,7 @@ static YYRESULTTAG yyuserAction( break; - case 336: + case 337: { chopSig(); @@ -5287,7 +5290,7 @@ static YYRESULTTAG yyuserAction( break; - case 342: + case 343: { ((*yyvalp).str) = @@ -5296,7 +5299,7 @@ static YYRESULTTAG yyuserAction( break; - case 343: + case 344: { ((*yyvalp).str) = @@ -5305,7 +5308,7 @@ static YYRESULTTAG yyuserAction( break; - case 344: + case 345: { ((*yyvalp).str) = @@ -5315,7 +5318,7 @@ static YYRESULTTAG yyuserAction( break; - case 345: + case 346: { ((*yyvalp).str) = @@ -5325,7 +5328,7 @@ static YYRESULTTAG yyuserAction( break; - case 346: + case 347: { ((*yyvalp).str) = @@ -5335,7 +5338,7 @@ static YYRESULTTAG yyuserAction( break; - case 347: + case 348: { ((*yyvalp).str) = @@ -5345,7 +5348,7 @@ static YYRESULTTAG yyuserAction( break; - case 348: + case 349: { ((*yyvalp).str) = @@ -5355,7 +5358,7 @@ static YYRESULTTAG yyuserAction( break; - case 349: + case 350: { ((*yyvalp).str) = @@ -5365,7 +5368,7 @@ static YYRESULTTAG yyuserAction( break; - case 350: + case 351: { ((*yyvalp).str) = @@ -5376,7 +5379,7 @@ static YYRESULTTAG yyuserAction( break; - case 351: + case 352: { ((*yyvalp).str) = @@ -5387,7 +5390,7 @@ static YYRESULTTAG yyuserAction( break; - case 352: + case 353: { ((*yyvalp).str) = @@ -5398,7 +5401,7 @@ static YYRESULTTAG yyuserAction( break; - case 353: + case 354: { postSig("template "); @@ -5406,7 +5409,7 @@ static YYRESULTTAG yyuserAction( break; - case 354: + case 355: { ((*yyvalp).str) = @@ -5417,7 +5420,7 @@ static YYRESULTTAG yyuserAction( break; - case 355: + case 356: { postSig("~"); @@ -5425,7 +5428,7 @@ static YYRESULTTAG yyuserAction( break; - case 356: + case 357: { postSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5433,7 +5436,7 @@ static YYRESULTTAG yyuserAction( break; - case 357: + case 358: { ((*yyvalp).str) = "::"; @@ -5442,7 +5445,7 @@ static YYRESULTTAG yyuserAction( break; - case 358: + case 359: { markSig(); @@ -5452,7 +5455,7 @@ static YYRESULTTAG yyuserAction( break; - case 359: + case 360: { chopSig(); @@ -5467,7 +5470,7 @@ static YYRESULTTAG yyuserAction( break; - case 360: + case 361: { markSig(); @@ -5476,7 +5479,7 @@ static YYRESULTTAG yyuserAction( break; - case 361: + case 362: { chopSig(); @@ -5486,14 +5489,6 @@ static YYRESULTTAG yyuserAction( break; - case 362: - - { - postSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); - } - - break; - case 363: { @@ -5558,11 +5553,10 @@ static YYRESULTTAG yyuserAction( break; - case 380: + case 371: { - setTypeBase(buildTypeBase( - getType(), (((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer))); + postSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); } break; @@ -5570,7 +5564,8 @@ static YYRESULTTAG yyuserAction( case 381: { - setTypeMod(VTK_PARSE_TYPEDEF); + setTypeBase(buildTypeBase( + getType(), (((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer))); } break; @@ -5578,15 +5573,15 @@ static YYRESULTTAG yyuserAction( case 382: { - setTypeMod(VTK_PARSE_FRIEND); + setTypeMod(VTK_PARSE_TYPEDEF); } break; - case 385: + case 383: { - setTypeMod((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer)); + setTypeMod(VTK_PARSE_FRIEND); } break; @@ -5609,6 +5604,14 @@ static YYRESULTTAG yyuserAction( case 388: + { + setTypeMod((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer)); + } + + break; + + case 389: + { postSig("constexpr "); ((*yyvalp).integer) = 0; @@ -5616,7 +5619,7 @@ static YYRESULTTAG yyuserAction( break; - case 389: + case 390: { postSig("mutable "); @@ -5625,7 +5628,7 @@ static YYRESULTTAG yyuserAction( break; - case 390: + case 391: { ((*yyvalp).integer) = 0; @@ -5633,7 +5636,7 @@ static YYRESULTTAG yyuserAction( break; - case 391: + case 392: { ((*yyvalp).integer) = 0; @@ -5641,7 +5644,7 @@ static YYRESULTTAG yyuserAction( break; - case 392: + case 393: { postSig("static "); @@ -5650,7 +5653,7 @@ static YYRESULTTAG yyuserAction( break; - case 393: + case 394: { postSig("thread_local "); @@ -5659,7 +5662,7 @@ static YYRESULTTAG yyuserAction( break; - case 394: + case 395: { ((*yyvalp).integer) = 0; @@ -5667,7 +5670,7 @@ static YYRESULTTAG yyuserAction( break; - case 395: + case 396: { postSig("virtual "); @@ -5676,7 +5679,7 @@ static YYRESULTTAG yyuserAction( break; - case 396: + case 397: { postSig("explicit "); @@ -5685,7 +5688,7 @@ static YYRESULTTAG yyuserAction( break; - case 397: + case 398: { postSig("const "); @@ -5694,7 +5697,7 @@ static YYRESULTTAG yyuserAction( break; - case 398: + case 399: { postSig("volatile "); @@ -5703,7 +5706,7 @@ static YYRESULTTAG yyuserAction( break; - case 400: + case 401: { ((*yyvalp).integer) = @@ -5713,7 +5716,7 @@ static YYRESULTTAG yyuserAction( break; - case 402: + case 403: { setTypeBase((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer)); @@ -5721,7 +5724,7 @@ static YYRESULTTAG yyuserAction( break; - case 404: + case 405: { setTypeBase((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer)); @@ -5729,7 +5732,7 @@ static YYRESULTTAG yyuserAction( break; - case 407: + case 408: { postSig(" "); @@ -5740,7 +5743,7 @@ static YYRESULTTAG yyuserAction( break; - case 408: + case 409: { postSig(" "); @@ -5751,7 +5754,7 @@ static YYRESULTTAG yyuserAction( break; - case 410: + case 411: { postSig(" "); @@ -5761,7 +5764,7 @@ static YYRESULTTAG yyuserAction( break; - case 411: + case 412: { postSig("typename "); @@ -5769,7 +5772,7 @@ static YYRESULTTAG yyuserAction( break; - case 412: + case 413: { postSig(" "); @@ -5780,7 +5783,7 @@ static YYRESULTTAG yyuserAction( break; - case 413: + case 414: { postSig(" "); @@ -5791,7 +5794,7 @@ static YYRESULTTAG yyuserAction( break; - case 414: + case 415: { postSig(" "); @@ -5802,7 +5805,7 @@ static YYRESULTTAG yyuserAction( break; - case 416: + case 417: { setTypeBase((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer)); @@ -5810,7 +5813,7 @@ static YYRESULTTAG yyuserAction( break; - case 418: + case 419: { setTypeBase((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer)); @@ -5818,7 +5821,7 @@ static YYRESULTTAG yyuserAction( break; - case 421: + case 422: { setTypeBase((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer)); @@ -5826,7 +5829,7 @@ static YYRESULTTAG yyuserAction( break; - case 423: + case 424: { setTypeBase((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer)); @@ -5834,7 +5837,7 @@ static YYRESULTTAG yyuserAction( break; - case 426: + case 427: { postSig(" "); @@ -5844,7 +5847,7 @@ static YYRESULTTAG yyuserAction( break; - case 427: + case 428: { postSig(" "); @@ -5855,7 +5858,7 @@ static YYRESULTTAG yyuserAction( break; - case 428: + case 429: { postSig(" "); @@ -5866,7 +5869,7 @@ static YYRESULTTAG yyuserAction( break; - case 429: + case 430: { postSig(" "); @@ -5877,7 +5880,7 @@ static YYRESULTTAG yyuserAction( break; - case 430: + case 431: { postSig(" "); @@ -5888,7 +5891,7 @@ static YYRESULTTAG yyuserAction( break; - case 431: + case 432: { postSig(" "); @@ -5899,7 +5902,7 @@ static YYRESULTTAG yyuserAction( break; - case 432: + case 433: { setTypeId(""); @@ -5907,7 +5910,7 @@ static YYRESULTTAG yyuserAction( break; - case 434: + case 435: { typeSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5916,7 +5919,7 @@ static YYRESULTTAG yyuserAction( break; - case 435: + case 436: { typeSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5925,7 +5928,7 @@ static YYRESULTTAG yyuserAction( break; - case 436: + case 437: { typeSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5934,7 +5937,7 @@ static YYRESULTTAG yyuserAction( break; - case 437: + case 438: { typeSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5943,7 +5946,7 @@ static YYRESULTTAG yyuserAction( break; - case 438: + case 439: { typeSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5952,7 +5955,7 @@ static YYRESULTTAG yyuserAction( break; - case 439: + case 440: { typeSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5961,7 +5964,7 @@ static YYRESULTTAG yyuserAction( break; - case 440: + case 441: { typeSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5970,7 +5973,7 @@ static YYRESULTTAG yyuserAction( break; - case 441: + case 442: { typeSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5979,7 +5982,7 @@ static YYRESULTTAG yyuserAction( break; - case 442: + case 443: { typeSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -5988,7 +5991,7 @@ static YYRESULTTAG yyuserAction( break; - case 443: + case 444: { postSig("auto "); @@ -5997,7 +6000,7 @@ static YYRESULTTAG yyuserAction( break; - case 444: + case 445: { postSig("void "); @@ -6006,7 +6009,7 @@ static YYRESULTTAG yyuserAction( break; - case 445: + case 446: { postSig("bool "); @@ -6015,7 +6018,7 @@ static YYRESULTTAG yyuserAction( break; - case 446: + case 447: { postSig("float "); @@ -6024,7 +6027,7 @@ static YYRESULTTAG yyuserAction( break; - case 447: + case 448: { postSig("double "); @@ -6033,7 +6036,7 @@ static YYRESULTTAG yyuserAction( break; - case 448: + case 449: { postSig("char "); @@ -6042,7 +6045,7 @@ static YYRESULTTAG yyuserAction( break; - case 449: + case 450: { postSig("char16_t "); @@ -6051,7 +6054,7 @@ static YYRESULTTAG yyuserAction( break; - case 450: + case 451: { postSig("char32_t "); @@ -6060,7 +6063,7 @@ static YYRESULTTAG yyuserAction( break; - case 451: + case 452: { postSig("wchar_t "); @@ -6069,7 +6072,7 @@ static YYRESULTTAG yyuserAction( break; - case 452: + case 453: { postSig("int "); @@ -6078,7 +6081,7 @@ static YYRESULTTAG yyuserAction( break; - case 453: + case 454: { postSig("short "); @@ -6087,7 +6090,7 @@ static YYRESULTTAG yyuserAction( break; - case 454: + case 455: { postSig("long "); @@ -6096,7 +6099,7 @@ static YYRESULTTAG yyuserAction( break; - case 455: + case 456: { postSig("__int64 "); @@ -6105,7 +6108,7 @@ static YYRESULTTAG yyuserAction( break; - case 456: + case 457: { postSig("signed "); @@ -6114,7 +6117,7 @@ static YYRESULTTAG yyuserAction( break; - case 457: + case 458: { postSig("unsigned "); @@ -6123,7 +6126,7 @@ static YYRESULTTAG yyuserAction( break; - case 461: + case 462: { ((*yyvalp).integer) = @@ -6133,7 +6136,7 @@ static YYRESULTTAG yyuserAction( break; - case 462: + case 463: { postSig("&"); @@ -6142,7 +6145,7 @@ static YYRESULTTAG yyuserAction( break; - case 463: + case 464: { postSig("&&"); @@ -6151,7 +6154,7 @@ static YYRESULTTAG yyuserAction( break; - case 464: + case 465: { postSig("*"); @@ -6159,7 +6162,7 @@ static YYRESULTTAG yyuserAction( break; - case 465: + case 466: { ((*yyvalp).integer) = @@ -6168,7 +6171,7 @@ static YYRESULTTAG yyuserAction( break; - case 466: + case 467: { ((*yyvalp).integer) = VTK_PARSE_POINTER; @@ -6176,7 +6179,7 @@ static YYRESULTTAG yyuserAction( break; - case 467: + case 468: { if (((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.integer) & @@ -6193,7 +6196,7 @@ static YYRESULTTAG yyuserAction( break; - case 469: + case 470: { unsigned int n; @@ -6208,7 +6211,7 @@ static YYRESULTTAG yyuserAction( break; - case 470: + case 471: { setAttributeRole(VTK_PARSE_ATTRIB_DECL); @@ -6216,7 +6219,7 @@ static YYRESULTTAG yyuserAction( break; - case 471: + case 472: { clearAttributeRole(); @@ -6224,7 +6227,7 @@ static YYRESULTTAG yyuserAction( break; - case 472: + case 473: { setAttributeRole(VTK_PARSE_ATTRIB_ID); @@ -6232,7 +6235,7 @@ static YYRESULTTAG yyuserAction( break; - case 473: + case 474: { clearAttributeRole(); @@ -6240,7 +6243,7 @@ static YYRESULTTAG yyuserAction( break; - case 474: + case 475: { setAttributeRole(VTK_PARSE_ATTRIB_REF); @@ -6248,7 +6251,7 @@ static YYRESULTTAG yyuserAction( break; - case 475: + case 476: { clearAttributeRole(); @@ -6256,7 +6259,7 @@ static YYRESULTTAG yyuserAction( break; - case 476: + case 477: { setAttributeRole(VTK_PARSE_ATTRIB_FUNC); @@ -6264,7 +6267,7 @@ static YYRESULTTAG yyuserAction( break; - case 477: + case 478: { clearAttributeRole(); @@ -6272,7 +6275,7 @@ static YYRESULTTAG yyuserAction( break; - case 478: + case 479: { setAttributeRole(VTK_PARSE_ATTRIB_ARRAY); @@ -6280,7 +6283,7 @@ static YYRESULTTAG yyuserAction( break; - case 479: + case 480: { clearAttributeRole(); @@ -6288,7 +6291,7 @@ static YYRESULTTAG yyuserAction( break; - case 480: + case 481: { setAttributeRole(VTK_PARSE_ATTRIB_CLASS); @@ -6296,7 +6299,7 @@ static YYRESULTTAG yyuserAction( break; - case 481: + case 482: { clearAttributeRole(); @@ -6304,7 +6307,7 @@ static YYRESULTTAG yyuserAction( break; - case 484: + case 485: { setAttributePrefix(NULL); @@ -6312,7 +6315,7 @@ static YYRESULTTAG yyuserAction( break; - case 487: + case 488: { setAttributePrefix(vtkstrcat( @@ -6321,7 +6324,7 @@ static YYRESULTTAG yyuserAction( break; - case 492: + case 493: { markSig(); @@ -6329,7 +6332,7 @@ static YYRESULTTAG yyuserAction( break; - case 493: + case 494: { handle_attribute( @@ -6338,7 +6341,7 @@ static YYRESULTTAG yyuserAction( break; - case 494: + case 495: { ((*yyvalp).integer) = 0; @@ -6346,7 +6349,7 @@ static YYRESULTTAG yyuserAction( break; - case 495: + case 496: { ((*yyvalp).integer) = VTK_PARSE_PACK; @@ -6354,7 +6357,7 @@ static YYRESULTTAG yyuserAction( break; - case 500: + case 501: { ((*yyvalp).str) = "()"; @@ -6362,7 +6365,7 @@ static YYRESULTTAG yyuserAction( break; - case 501: + case 502: { ((*yyvalp).str) = "[]"; @@ -6370,7 +6373,7 @@ static YYRESULTTAG yyuserAction( break; - case 502: + case 503: { ((*yyvalp).str) = " new[]"; @@ -6378,7 +6381,7 @@ static YYRESULTTAG yyuserAction( break; - case 503: + case 504: { ((*yyvalp).str) = " delete[]"; @@ -6386,7 +6389,7 @@ static YYRESULTTAG yyuserAction( break; - case 504: + case 505: { ((*yyvalp).str) = "<"; @@ -6394,7 +6397,7 @@ static YYRESULTTAG yyuserAction( break; - case 505: + case 506: { ((*yyvalp).str) = ">"; @@ -6402,7 +6405,7 @@ static YYRESULTTAG yyuserAction( break; - case 506: + case 507: { ((*yyvalp).str) = ","; @@ -6410,7 +6413,7 @@ static YYRESULTTAG yyuserAction( break; - case 507: + case 508: { ((*yyvalp).str) = "="; @@ -6418,7 +6421,7 @@ static YYRESULTTAG yyuserAction( break; - case 508: + case 509: { ((*yyvalp).str) = ">>"; @@ -6426,7 +6429,7 @@ static YYRESULTTAG yyuserAction( break; - case 509: + case 510: { ((*yyvalp).str) = ">>"; @@ -6434,7 +6437,7 @@ static YYRESULTTAG yyuserAction( break; - case 510: + case 511: { ((*yyvalp).str) = vtkstrcat( @@ -6443,7 +6446,7 @@ static YYRESULTTAG yyuserAction( break; - case 512: + case 513: { ((*yyvalp).str) = "%"; @@ -6451,7 +6454,7 @@ static YYRESULTTAG yyuserAction( break; - case 513: + case 514: { ((*yyvalp).str) = "*"; @@ -6459,7 +6462,7 @@ static YYRESULTTAG yyuserAction( break; - case 514: + case 515: { ((*yyvalp).str) = "/"; @@ -6467,7 +6470,7 @@ static YYRESULTTAG yyuserAction( break; - case 515: + case 516: { ((*yyvalp).str) = "-"; @@ -6475,7 +6478,7 @@ static YYRESULTTAG yyuserAction( break; - case 516: + case 517: { ((*yyvalp).str) = "+"; @@ -6483,7 +6486,7 @@ static YYRESULTTAG yyuserAction( break; - case 517: + case 518: { ((*yyvalp).str) = "!"; @@ -6491,7 +6494,7 @@ static YYRESULTTAG yyuserAction( break; - case 518: + case 519: { ((*yyvalp).str) = "~"; @@ -6499,7 +6502,7 @@ static YYRESULTTAG yyuserAction( break; - case 519: + case 520: { ((*yyvalp).str) = "&"; @@ -6507,7 +6510,7 @@ static YYRESULTTAG yyuserAction( break; - case 520: + case 521: { ((*yyvalp).str) = "|"; @@ -6515,7 +6518,7 @@ static YYRESULTTAG yyuserAction( break; - case 521: + case 522: { ((*yyvalp).str) = "^"; @@ -6523,7 +6526,7 @@ static YYRESULTTAG yyuserAction( break; - case 522: + case 523: { ((*yyvalp).str) = " new"; @@ -6531,7 +6534,7 @@ static YYRESULTTAG yyuserAction( break; - case 523: + case 524: { ((*yyvalp).str) = " delete"; @@ -6539,7 +6542,7 @@ static YYRESULTTAG yyuserAction( break; - case 524: + case 525: { ((*yyvalp).str) = "<<="; @@ -6547,7 +6550,7 @@ static YYRESULTTAG yyuserAction( break; - case 525: + case 526: { ((*yyvalp).str) = ">>="; @@ -6555,7 +6558,7 @@ static YYRESULTTAG yyuserAction( break; - case 526: + case 527: { ((*yyvalp).str) = "<<"; @@ -6563,7 +6566,7 @@ static YYRESULTTAG yyuserAction( break; - case 527: + case 528: { ((*yyvalp).str) = ".*"; @@ -6571,7 +6574,7 @@ static YYRESULTTAG yyuserAction( break; - case 528: + case 529: { ((*yyvalp).str) = "->*"; @@ -6579,7 +6582,7 @@ static YYRESULTTAG yyuserAction( break; - case 529: + case 530: { ((*yyvalp).str) = "->"; @@ -6587,7 +6590,7 @@ static YYRESULTTAG yyuserAction( break; - case 530: + case 531: { ((*yyvalp).str) = "+="; @@ -6595,7 +6598,7 @@ static YYRESULTTAG yyuserAction( break; - case 531: + case 532: { ((*yyvalp).str) = "-="; @@ -6603,7 +6606,7 @@ static YYRESULTTAG yyuserAction( break; - case 532: + case 533: { ((*yyvalp).str) = "*="; @@ -6611,7 +6614,7 @@ static YYRESULTTAG yyuserAction( break; - case 533: + case 534: { ((*yyvalp).str) = "/="; @@ -6619,7 +6622,7 @@ static YYRESULTTAG yyuserAction( break; - case 534: + case 535: { ((*yyvalp).str) = "%="; @@ -6627,7 +6630,7 @@ static YYRESULTTAG yyuserAction( break; - case 535: + case 536: { ((*yyvalp).str) = "++"; @@ -6635,7 +6638,7 @@ static YYRESULTTAG yyuserAction( break; - case 536: + case 537: { ((*yyvalp).str) = "--"; @@ -6643,7 +6646,7 @@ static YYRESULTTAG yyuserAction( break; - case 537: + case 538: { ((*yyvalp).str) = "&="; @@ -6651,7 +6654,7 @@ static YYRESULTTAG yyuserAction( break; - case 538: + case 539: { ((*yyvalp).str) = "|="; @@ -6659,7 +6662,7 @@ static YYRESULTTAG yyuserAction( break; - case 539: + case 540: { ((*yyvalp).str) = "^="; @@ -6667,7 +6670,7 @@ static YYRESULTTAG yyuserAction( break; - case 540: + case 541: { ((*yyvalp).str) = "&&"; @@ -6675,7 +6678,7 @@ static YYRESULTTAG yyuserAction( break; - case 541: + case 542: { ((*yyvalp).str) = "||"; @@ -6683,7 +6686,7 @@ static YYRESULTTAG yyuserAction( break; - case 542: + case 543: { ((*yyvalp).str) = "=="; @@ -6691,7 +6694,7 @@ static YYRESULTTAG yyuserAction( break; - case 543: + case 544: { ((*yyvalp).str) = "!="; @@ -6699,7 +6702,7 @@ static YYRESULTTAG yyuserAction( break; - case 544: + case 545: { ((*yyvalp).str) = "<="; @@ -6707,7 +6710,7 @@ static YYRESULTTAG yyuserAction( break; - case 545: + case 546: { ((*yyvalp).str) = ">="; @@ -6715,7 +6718,7 @@ static YYRESULTTAG yyuserAction( break; - case 546: + case 547: { ((*yyvalp).str) = "typedef"; @@ -6723,7 +6726,7 @@ static YYRESULTTAG yyuserAction( break; - case 547: + case 548: { ((*yyvalp).str) = "typename"; @@ -6731,7 +6734,7 @@ static YYRESULTTAG yyuserAction( break; - case 548: + case 549: { ((*yyvalp).str) = "class"; @@ -6739,7 +6742,7 @@ static YYRESULTTAG yyuserAction( break; - case 549: + case 550: { ((*yyvalp).str) = "struct"; @@ -6747,7 +6750,7 @@ static YYRESULTTAG yyuserAction( break; - case 550: + case 551: { ((*yyvalp).str) = "union"; @@ -6755,7 +6758,7 @@ static YYRESULTTAG yyuserAction( break; - case 551: + case 552: { ((*yyvalp).str) = "template"; @@ -6763,7 +6766,7 @@ static YYRESULTTAG yyuserAction( break; - case 552: + case 553: { ((*yyvalp).str) = "public"; @@ -6771,7 +6774,7 @@ static YYRESULTTAG yyuserAction( break; - case 553: + case 554: { ((*yyvalp).str) = "protected"; @@ -6779,7 +6782,7 @@ static YYRESULTTAG yyuserAction( break; - case 554: + case 555: { ((*yyvalp).str) = "private"; @@ -6787,7 +6790,7 @@ static YYRESULTTAG yyuserAction( break; - case 555: + case 556: { ((*yyvalp).str) = "const"; @@ -6795,7 +6798,7 @@ static YYRESULTTAG yyuserAction( break; - case 556: + case 557: { ((*yyvalp).str) = "volatile"; @@ -6803,7 +6806,7 @@ static YYRESULTTAG yyuserAction( break; - case 557: + case 558: { ((*yyvalp).str) = "static"; @@ -6811,7 +6814,7 @@ static YYRESULTTAG yyuserAction( break; - case 558: + case 559: { ((*yyvalp).str) = "thread_local"; @@ -6819,7 +6822,7 @@ static YYRESULTTAG yyuserAction( break; - case 559: + case 560: { ((*yyvalp).str) = "constexpr"; @@ -6827,7 +6830,7 @@ static YYRESULTTAG yyuserAction( break; - case 560: + case 561: { ((*yyvalp).str) = "inline"; @@ -6835,7 +6838,7 @@ static YYRESULTTAG yyuserAction( break; - case 561: + case 562: { ((*yyvalp).str) = "virtual"; @@ -6843,7 +6846,7 @@ static YYRESULTTAG yyuserAction( break; - case 562: + case 563: { ((*yyvalp).str) = "explicit"; @@ -6851,7 +6854,7 @@ static YYRESULTTAG yyuserAction( break; - case 563: + case 564: { ((*yyvalp).str) = "decltype"; @@ -6859,7 +6862,7 @@ static YYRESULTTAG yyuserAction( break; - case 564: + case 565: { ((*yyvalp).str) = "default"; @@ -6867,7 +6870,7 @@ static YYRESULTTAG yyuserAction( break; - case 565: + case 566: { ((*yyvalp).str) = "extern"; @@ -6875,7 +6878,7 @@ static YYRESULTTAG yyuserAction( break; - case 566: + case 567: { ((*yyvalp).str) = "using"; @@ -6883,7 +6886,7 @@ static YYRESULTTAG yyuserAction( break; - case 567: + case 568: { ((*yyvalp).str) = "namespace"; @@ -6891,7 +6894,7 @@ static YYRESULTTAG yyuserAction( break; - case 568: + case 569: { ((*yyvalp).str) = "operator"; @@ -6899,7 +6902,7 @@ static YYRESULTTAG yyuserAction( break; - case 569: + case 570: { ((*yyvalp).str) = "enum"; @@ -6907,7 +6910,7 @@ static YYRESULTTAG yyuserAction( break; - case 570: + case 571: { ((*yyvalp).str) = "throw"; @@ -6915,7 +6918,7 @@ static YYRESULTTAG yyuserAction( break; - case 571: + case 572: { ((*yyvalp).str) = "noexcept"; @@ -6923,7 +6926,7 @@ static YYRESULTTAG yyuserAction( break; - case 572: + case 573: { ((*yyvalp).str) = "const_cast"; @@ -6931,7 +6934,7 @@ static YYRESULTTAG yyuserAction( break; - case 573: + case 574: { ((*yyvalp).str) = "dynamic_cast"; @@ -6939,7 +6942,7 @@ static YYRESULTTAG yyuserAction( break; - case 574: + case 575: { ((*yyvalp).str) = "static_cast"; @@ -6947,7 +6950,7 @@ static YYRESULTTAG yyuserAction( break; - case 575: + case 576: { ((*yyvalp).str) = "reinterpret_cast"; @@ -6955,7 +6958,7 @@ static YYRESULTTAG yyuserAction( break; - case 589: + case 590: { postSig("< "); @@ -6963,7 +6966,7 @@ static YYRESULTTAG yyuserAction( break; - case 590: + case 591: { postSig("> "); @@ -6971,7 +6974,7 @@ static YYRESULTTAG yyuserAction( break; - case 592: + case 593: { postSig(">"); @@ -6979,7 +6982,7 @@ static YYRESULTTAG yyuserAction( break; - case 594: + case 595: { chopSig(); @@ -6988,7 +6991,7 @@ static YYRESULTTAG yyuserAction( break; - case 598: + case 599: { const char* op = (((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str); @@ -7028,7 +7031,7 @@ static YYRESULTTAG yyuserAction( break; - case 599: + case 600: { postSig(":"); @@ -7037,7 +7040,7 @@ static YYRESULTTAG yyuserAction( break; - case 600: + case 601: { postSig("."); @@ -7045,7 +7048,7 @@ static YYRESULTTAG yyuserAction( break; - case 601: + case 602: { postSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -7054,7 +7057,7 @@ static YYRESULTTAG yyuserAction( break; - case 602: + case 603: { postSig((((yyGLRStackItem const*)yyvsp)[YYFILL(0)].yystate.yysemantics.yysval.str)); @@ -7063,7 +7066,7 @@ static YYRESULTTAG yyuserAction( break; - case 604: + case 605: { chopSig(); @@ -7072,7 +7075,7 @@ static YYRESULTTAG yyuserAction( break; - case 608: + case 609: { postSig("< "); @@ -7080,7 +7083,7 @@ static YYRESULTTAG yyuserAction( break; - case 609: + case 610: { postSig("> "); @@ -7088,7 +7091,7 @@ static YYRESULTTAG yyuserAction( break; - case 610: + case 611: { postSig(">"); @@ -7096,7 +7099,7 @@ static YYRESULTTAG yyuserAction( break; - case 612: + case 613: { postSig("= "); @@ -7104,7 +7107,7 @@ static YYRESULTTAG yyuserAction( break; - case 613: + case 614: { chopSig(); @@ -7113,7 +7116,7 @@ static YYRESULTTAG yyuserAction( break; - case 615: + case 616: { chopSig(); @@ -7122,7 +7125,7 @@ static YYRESULTTAG yyuserAction( break; - case 623: + case 624: { postSig("= "); @@ -7130,7 +7133,7 @@ static YYRESULTTAG yyuserAction( break; - case 624: + case 625: { chopSig(); @@ -7139,7 +7142,7 @@ static YYRESULTTAG yyuserAction( break; - case 625: + case 626: { chopSig(); @@ -7152,7 +7155,7 @@ static YYRESULTTAG yyuserAction( break; - case 626: + case 627: { chopSig(); @@ -7165,7 +7168,7 @@ static YYRESULTTAG yyuserAction( break; - case 629: + case 630: { postSigLeftBracket("["); @@ -7173,7 +7176,7 @@ static YYRESULTTAG yyuserAction( break; - case 630: + case 631: { postSigRightBracket("] "); @@ -7181,7 +7184,7 @@ static YYRESULTTAG yyuserAction( break; - case 631: + case 632: { postSig("[["); @@ -7189,7 +7192,7 @@ static YYRESULTTAG yyuserAction( break; - case 632: + case 633: { chopSig(); @@ -7198,7 +7201,7 @@ static YYRESULTTAG yyuserAction( break; - case 633: + case 634: { postSigLeftBracket("("); @@ -7206,7 +7209,7 @@ static YYRESULTTAG yyuserAction( break; - case 634: + case 635: { postSigRightBracket(") "); @@ -7214,7 +7217,7 @@ static YYRESULTTAG yyuserAction( break; - case 635: + case 636: { postSigLeftBracket("("); @@ -7224,7 +7227,7 @@ static YYRESULTTAG yyuserAction( break; - case 636: + case 637: { postSigRightBracket(") "); @@ -7232,7 +7235,7 @@ static YYRESULTTAG yyuserAction( break; - case 637: + case 638: { postSigLeftBracket("("); @@ -7242,7 +7245,7 @@ static YYRESULTTAG yyuserAction( break; - case 638: + case 639: { postSigRightBracket(") "); @@ -7250,7 +7253,7 @@ static YYRESULTTAG yyuserAction( break; - case 639: + case 640: { postSig("{ "); @@ -7258,7 +7261,7 @@ static YYRESULTTAG yyuserAction( break; - case 640: + case 641: { postSig("} "); @@ -7352,7 +7355,7 @@ static yySymbol yylhsNonterm(yyRuleNum yyrule) return yyr1[yyrule]; } -#define yypact_value_is_default(Yystate) (!!((Yystate) == (-852))) +#define yypact_value_is_default(Yystate) (!!((Yystate) == (-808))) /** True iff LR state YYSTATE has only a default reduction (regardless * of token). */ diff --git a/Wrapping/Tools/vtkParse.y b/Wrapping/Tools/vtkParse.y index 7f13c0483ea6..8f2bd40044f2 100644 --- a/Wrapping/Tools/vtkParse.y +++ b/Wrapping/Tools/vtkParse.y @@ -1853,6 +1853,7 @@ namespace_definition: NAMESPACE '{' ignored_items '}' | NAMESPACE identifier { pushNamespace($2); } '{' opt_declaration_seq '}' { popNamespace(); } + | INLINE NAMESPACE identifier '{' opt_declaration_seq '}' namespace_alias_definition: NAMESPACE identifier '=' qualified_id ';' -- GitLab From dbf95456f6b1b041032f54e41b70ec447c09896c Mon Sep 17 00:00:00 2001 From: Chuck Atkins Date: Tue, 15 Mar 2022 15:52:53 -0400 Subject: [PATCH 0003/1015] Consider NaNs when calculating data ranges in vtkDataArray --- Common/Core/vtkDataArrayPrivate.txx | 4 +-- Common/Core/vtkMathUtilities.h | 50 +++++++++++++++++++++++++++++ 2 files changed, 52 insertions(+), 2 deletions(-) diff --git a/Common/Core/vtkDataArrayPrivate.txx b/Common/Core/vtkDataArrayPrivate.txx index 5e504b76529b..bf983f9988df 100644 --- a/Common/Core/vtkDataArrayPrivate.txx +++ b/Common/Core/vtkDataArrayPrivate.txx @@ -20,6 +20,7 @@ #include "vtkAssume.h" #include "vtkDataArray.h" #include "vtkDataArrayRange.h" +#include "vtkMathUtilities.h" #include "vtkSMPThreadLocal.h" #include "vtkSMPTools.h" #include "vtkTypeTraits.h" @@ -184,8 +185,7 @@ public: size_t j = 0; for (const APIType value : tuple) { - range[j] = detail::min(range[j], value); - range[j + 1] = detail::max(range[j + 1], value); + vtkMathUtilities::UpdateRange(range[j], range[j + 1], value); j += 2; } } diff --git a/Common/Core/vtkMathUtilities.h b/Common/Core/vtkMathUtilities.h index 3a49cda5b855..6dd33d11fee5 100644 --- a/Common/Core/vtkMathUtilities.h +++ b/Common/Core/vtkMathUtilities.h @@ -29,6 +29,8 @@ #include #include +#include +#include namespace vtkMathUtilities { @@ -79,6 +81,54 @@ bool NearlyEqual(A a, A b, A tol = std::numeric_limits::epsilon()) return ((d1 <= tol) || (d2 <= tol)); } +/** + * Update an existing min - max range with a new prospective value. If the + * value is non NaN then the appropriate range comparisons are made and + * updated, otherwise the original min - max values are set. + * + * Examples: + * + * No change: + * UpdateRange(-100, 100, 20) -> (-100, 100) + * + * Update min: + * UpdateRange(-100, 100, -200) -> (-200, 100) + * + * Update max: + * UpdateRange(-100, 100, 200) -> (-100, 200) + * + * Input min and max are inverted creating an invalid range so a new range + * with the specified value is set: + * UpdateRange(100, -100, 20) -> (20, 20) + * + * Input value is NaN so the original range is set + * UpdateRange(-100, 100, NaN) -> (-100, 100) + */ +template +void UpdateRangeImpl(A& min0, A& max0, const A& value) +{ + std::tie(min0, max0) = (value < min0) + ? std::tie(value, max0 < value ? value : max0) + : ((value > max0) ? std::tie(min0 > value ? value : min0, value) : std::tie(min0, max0)); +} + +template // Non floating point implementation not caring about NaN +void UpdateRange(A& min0, A& max0, const A& value, + typename std::enable_if::value>::type* = 0) +{ + UpdateRangeImpl(min0, max0, value); +} + +template // Floating point implementation specificaly considering NaN +void UpdateRange(A& min0, A& max0, const A& value, + typename std::enable_if::value>::type* = 0) +{ + if (!std::isnan(value)) + { + UpdateRangeImpl(min0, max0, value); + } +} + } // End vtkMathUtilities namespace. #endif // vtkMathUtilities_h -- GitLab From 4b35b647126d3fd17596f336b25dbd1c23cfcc39 Mon Sep 17 00:00:00 2001 From: Cory Quammen Date: Tue, 12 Apr 2022 13:46:11 -0400 Subject: [PATCH 0004/1015] Avoid undefined assignment operator errors MSVC could not assign a std::tie with a const ref to a std::tie without the const. Simplify the expression with if statements, which also avoids using std::tie entirely. --- Common/Core/vtkMathUtilities.h | 14 +++++++++++--- 1 file changed, 11 insertions(+), 3 deletions(-) diff --git a/Common/Core/vtkMathUtilities.h b/Common/Core/vtkMathUtilities.h index 6dd33d11fee5..848001a18adc 100644 --- a/Common/Core/vtkMathUtilities.h +++ b/Common/Core/vtkMathUtilities.h @@ -107,9 +107,17 @@ bool NearlyEqual(A a, A b, A tol = std::numeric_limits::epsilon()) template void UpdateRangeImpl(A& min0, A& max0, const A& value) { - std::tie(min0, max0) = (value < min0) - ? std::tie(value, max0 < value ? value : max0) - : ((value > max0) ? std::tie(min0 > value ? value : min0, value) : std::tie(min0, max0)); + // need temporaries to handle const/non const ref mismatch + if (value < min0) + { + min0 = value; + max0 = max0 < value ? value : max0; + } + else if (value > max0) + { + min0 = min0 > value ? value : min0; + max0 = value; + } } template // Non floating point implementation not caring about NaN -- GitLab From 63f6b0f6ed0928d55d08a9961495f3551b2d97c7 Mon Sep 17 00:00:00 2001 From: Andrew Maclean Date: Wed, 13 Apr 2022 10:40:14 +1000 Subject: [PATCH 0005/1015] Adding documentation for getting started using Linux --- Documentation/dev/build.md | 8 + Documentation/dev/build_windows_vs.md | 4 +- Documentation/dev/getting_started_linux.md | 243 ++++++++++++++++++ .../dev/images/TestHighlightPickedActor.png | Bin 0 -> 26209 bytes Documentation/dev/images/done1.png | Bin 35555 -> 0 bytes 5 files changed, 253 insertions(+), 2 deletions(-) create mode 100644 Documentation/dev/getting_started_linux.md create mode 100644 Documentation/dev/images/TestHighlightPickedActor.png delete mode 100644 Documentation/dev/images/done1.png diff --git a/Documentation/dev/build.md b/Documentation/dev/build.md index 8c3823601724..5d2330b1e9a6 100644 --- a/Documentation/dev/build.md +++ b/Documentation/dev/build.md @@ -12,6 +12,14 @@ such as Python, Qt, CGNS, HDF5, etc. Some of these are included in the VTK source itself (e.g., HDF5), while others are expected to be present on the machine on which VTK is being built (e.g., Python, Qt). +## New Users + +For new users of VTK or those wanting a quick setup, these instructions will be useful: + +* [Getting Started Using Linux](https://gitlab.kitware.com/vtk/vtk/-/blob/master/Documentation/dev/getting_started_linux.md). This will will lead you step by step through the process of setting up VTK with Python wrapping in your home folder. + +Once you get everything working, don't forget to come back and read the rest of this document. + ## Obtaining the source To obtain VTK's sources locally, clone this repository using diff --git a/Documentation/dev/build_windows_vs.md b/Documentation/dev/build_windows_vs.md index 838a686c9764..1e8768a1708f 100644 --- a/Documentation/dev/build_windows_vs.md +++ b/Documentation/dev/build_windows_vs.md @@ -140,7 +140,7 @@ TEST WITH AN EXAMPLE If everything went well then it should now be possible to compile and run the one of the C++ examples. -From the [Examples](https://lorensen.github.io/VTKExamples/site/Cxx/) pick a simple but appealing one. In this guide we've used [this one](https://lorensen.github.io/VTKExamples/site/Cxx/Picking/HighlightPickedActor/) +From [vtk-examples](https://kitware.github.io/vtk-examples/site/Cxx/) pick a simple but appealing one. In this guide we've used [this one](https://kitware.github.io/vtk-examples/site/Cxx/Picking/HighlightPickedActor/) 1. Downloads or copy-paste the .cxx and CMakeLists.txt files and save them in the same folder. 2. Open CMake and select the folder where the files were saves as "where is the source code" folder. @@ -162,7 +162,7 @@ In visual sudio: 8. Select the example (HighlightPickedActor) as start-up project. (right click -> set as start-up project) 9. Run! -![alt text](./Documentation/dev/images/done1.png) +![alt text](./Documentation/dev/images/TestHighlightPickedActor.png) If your program complains about missing DLLs then check if the .dll path (last step of INSTALL section) was added correctly. diff --git a/Documentation/dev/getting_started_linux.md b/Documentation/dev/getting_started_linux.md new file mode 100644 index 000000000000..481e13383522 --- /dev/null +++ b/Documentation/dev/getting_started_linux.md @@ -0,0 +1,243 @@ +# Getting Started Using Linux + +## Contents + +1. [Introduction](#introduction) +2. [Preliminary Steps](#preliminary-steps) + 1. [Update your installation](#update-your-installation) + 2. [Setup Python](#setup-python) +3. [Create local source and build folders for VTK](#create-local-source-and-build-folders-for-vtk) +4. [Build VTK](#build-vtk) +5. [Testing](#testing) +6. [Additional Comments](#additional-comments) + +## Introduction + +These instructions will will lead you step by step through the process of setting up VTK in your home folder. + +After completing these instructions, you will have a basic VTK build with Python wrappings. From this base you can then add more options and build settings as outlined in the full documentation [Building VTK](https://gitlab.kitware.com/vtk/vtk/-/blob/master/Documentation/dev/build.md). + +We are assuming that you are working in your home folder and the directory structure in your home folder will be: + +``` text +|-- Kitware + |-- build + |-- src + |-- test + +``` + +There will be a `VTK` folder in each of `build`, `src`, `test`. The advantage of this structure is a clear functional separation between sources and builds and it also allows adding future sources and builds such as for **ParaView** and the **vtk-examples** in their own sub-folders. + +## Preliminary Steps + +You will need **`sudo`** rights to use apt. + +### Update your installation + +``` bash +sudo apt-get update +sudo apt-get upgrade +``` + +Make sure we have the tools needed to build VTK: + +``` bash +sudo apt-get install build-essential libncurses5-dev libxext-dev mesa-common-dev mesa-utils freeglut3-dev python3-dev python3-venv git-core gitk git-gui ninja-build +``` + +In your environment e.g. `~/.bashrc` set: + +``` bash +alias ninja=ninja-build +``` + +For CMake, it is best to download and install CMake from [Get the Software](https://cmake.org/download/), it's a good idea to make sure `cmake-gui` is installed. Note that, if you are building `cmake-gui`, Qt needs to be installed. This is the preferred option as you will get the latest version. + +The alternative is: + +``` bash +sudo apt-get install cmake cmake-gui +``` + +Be aware this version may be an older release. + +### Setup Python + +We will use a virtual environment for VTK, let's call it `VTK`. + +If you are already in a virtual environment `deactivate` to make sure the correct version of python is being used. + +Create the virtual environment: + +``` bash +deactivate +python3 -m venv $HOME/venv/VTK +``` + +Activate and install the necessary components for VTK: + +``` bash +source $HOME/venv/VTK/bin/activate +python -m pip install --upgrade pip +pip install wheel +pip install Sphinx scipy numpy matplotlib pytz tzdata setuptools +deactivate +``` + +In future, if you want to upgrade packages: + +``` bash +source $HOME/venv/VTK/bin/activate +python -m pip install --upgrade pip +pip install --upgrade Sphinx scipy numpy matplotlib pytz tzdata setuptools wheel +deactivate +``` + +At this stage you have a virtual environment for VTK, test it: + +``` bash +source $HOME/venv/VTK/bin/activate +python -V +deactivate +``` + +## Create local source and build folders for VTK + +The source for building VTK will be in `~/Kitware/src/VTK`, the build for VTK will be in `~/Kitware/build/VTK` with any tests in `~/Kitware/tests/VTK`. + +``` bash +cd ~ +mkdir -p ~/Kitware/{src/VTK,build/VTK,tests/VTK} +``` + +## Build VTK + +Check out the master using git: + +```bash +cd ~/Kitware/src +git clone --recursive https://gitlab.kitware.com/vtk/vtk.git VTK +``` + +**Note:** *An alternative is to download the [VTK Latest Release](https://vtk.org/download/), unpack it and move/copy the contents into `~/Kitware/src/VTK`.* + +Let's just do a minimal build, you can "build" on this later. +For more information see [Building VTK](https://gitlab.kitware.com/vtk/vtk/-/blob/master/Documentation/dev/build.md). + +So for CMake we need the following settings: + +* `BUILD_SHARED_LIBS`: `ON` - should be `ON` by default +* `VTK_ALL_NEW_OBJECT_FACTORY`: `ON` +* `VTK_ENABLE_WRAPPING`: `ON` - should be `ON` by default +* `VTK_WRAP_PYTHON`: `ON` + +We will use `cmake-gui` to do the VTK configuration. + +**Important:** *Before even configuring VTK for a build using CMake, make sure your Python virtual environment is activated.* + +``` bash +cd ~/Kitware/build/VTK +source $HOME/venv/VTK/bin/activate +cmake-gui ~/Kitware/src/VTK +``` + +Press `Configure`, specifying `Ninja` as the generator and then set the above settings to `ON`. Use `Search` to find the settings. + +Once you have set everything, press `Generate`. + +Exit and run `ninja`: + +``` bash +ninja +``` + +**Note:** *If the build fails. Run cmake-gui again and set `VTK_PYTHON_OPTIONAL_LINK` to `OFF` then Configure, Generate, exit and run ninja again.* + +## Testing + +Go to [CylinderExample](https://kitware.github.io/vtk-examples/site/Cxx/GeometricObjects/CylinderExample/) and download the tarball, extract it, and move it into `Kitware/test/VTK` + +Create a file called `CylinderExample.py` in `Kitware/test/VTK`, mark it executable (if you want) and open it in a text editor. Go to the python version of [CylinderExample](https://kitware.github.io/vtk-examples/site/Python/GeometricObjects/CylinderExample/) and copy it into your `CylinderExample.py` and save it. + +We need to pick up where the vtk build is and where the lib is: + +``` bash +export VTK_DIR=$HOME/Kitware/build/VTK +source $VTK_DIR/unix_path.sh +alias vtkpython=$VTK_DIR/bin/vtkpython +``` + +Now go to the Testing folder and build the test: + +``` bash +cd ~/Kitware/test/VTK/CylinderExample/build +cmake-gui .. +``` + +Press `Configure`, specifying `Ninja` as the generator then press `Generate` and exit, then: + +``` bash +ninja +./CylinderExample +``` + +For Python, you can use either `python` or `vtkpython`: + +``` bash +cd ~/Kitware/test/VTK +python CylinderExample.py +vtkpython CylinderExample.py +``` + +If the CylinderExample is executable: + +``` bash +./CylinderExample.py +``` + +## Additional Comments + +You **must** set the environment as follows: + +``` bash +source $HOME/venv/VTK/bin/activate +export VTK_DIR=$HOME/Kitware/build/VTK +source $VTK_DIR/unix_path.sh +alias vtkpython=$VTK_DIR/bin/vtkpython +``` + +This can be put into a bash script that you can source. + +Here is an example: + +``` bash +# Set the correct environment when using VTK +# +source $HOME/venv/VTK/bin/activate +export VTK_DIR=$HOME/Kitware/build/VTK +if [ -f $VTK_DIR/unix_path.sh ] +then + source $VTK_DIR/unix_path.sh +else + # Note: x86_64-linux-gnu and python3.9 depend on your implementation + # and may be different from the values here. + export LD_LIBRARY_PATH=$VTK_DIR/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH + export PYTHONPATH=$VTK_DIR/lib/x86_64-linux-gnu/python3.10/site-packages:$PYTHONPATH +fi +alias vtkpython=$VTK_DIR/bin/vtkpython +``` + +Copy this into a file called `VTK.sh` and make it executable. A good place to put this would be in `~/Kitware`. Then you can just: + +``` bash +source ~/Kitware/VTK.sh +``` + +Thereby setting your VTK environment for whenever you need to: + +* build VTK +* build your own code +* run VTK Python scripts + +If you use an IDE like PyCharm, set the Virtual Environment to the existing VTK Virtual Environment e.g. `~/venv/VTK/bin/python` and add the path to the VTK site packages in the interpreter paths, e.g.: `~/Kitware/build/VTK/lib/x86_64-linux-gnu/python3.9/site-packages` diff --git a/Documentation/dev/images/TestHighlightPickedActor.png b/Documentation/dev/images/TestHighlightPickedActor.png new file mode 100644 index 0000000000000000000000000000000000000000..03037f7ace3b9f655a0596d234f8fdd0980d95d6 GIT binary patch literal 26209 zcmeAS@N?(olHy`uVBq!ia0y~yU}|7sV0^&A#K6F?YqR%e1_lKNPZ!6Kinup-tGA?F zkCp$i_j~^P+H)&c{eF?RHENRT=}9?16;C@&NKp{j;4tI(jfaLdIp+m9B4>5c4g)>nbDrQVz?5X^rDE)^iIVW;js`sWf*EZkYKEL#L*j3B) z_kV9!|GV)#B=mGpys~%frM2&uuV42r_wKslRaa~Gf4$v*e_DRUZEIEr28Nipto`~7 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zsb0I4U+jC|G=ATZwKLX8-@jvE_<75%ZN1fsH=Huw-q<4__b~T#o9%?M!~U!9#_TO( zc6qQNk-er=R-pImO~;K#4+ltC9*dC?c?KHGQur*mb9Hd#Ef%fmdZGUIfr97W9o#%2 zy*Qe^YghObzBTJ4BH6#Kk-dM#V54Zttu1Blm#v!I63%}6bv4>?{e((ww`qo@w9Kuabxg-dZD+6Ac=2abpnvu&wCluTP0i>je@%-)`SDyJ}O` ztwa1@wWdZK+>o}btD;Quo_n=&!z9-U-3p&gKjb>jy5uOdO0sC~ffoUlMZQ0up4-&6 zW>y&JOxX?UE>{xXM|l3%IJsO2dso2$C} ze)Ty7`{#Mr$K7_Q`>kLhzJ_c4&b7>zXKNde<>kk=?_PB?EQp&i?BzK@iMcvcr!Fk| zq~rSeTWid5(5`?<2VU;E5q$PS+U1nAT|TG7W*-sbe-SiY)6W^M1nEe2QO7H&?u7dPRx^c0<@KWq!4 z)@_}!tRzUqYTBs-L9c#R&A#$3H2tZwi>YXc!?vwr;nB^e*AjI1%;MHk{IF{8Pp)u> zoU+q0b{kC(m_9xEr@qrscH(LtFEPhD>6M@j{6bczS+*%{I^raj`ND`dI#onMR%tT# zBi)qHm3P(4e>m<_GCot-z4l@EmJ+#zdjlS=JFr~t&IXYGiW+6SY`E_RoiSsXA!Y9T zG~x9fo!-eSH!*TCpnCPDcCNG0;wu{n9Jf$Guqf zAhNk8n)7 Date: Wed, 13 Apr 2022 15:41:28 +1000 Subject: [PATCH 0006/1015] Fixing image links in build_windows_vs.md --- Documentation/dev/build_windows_vs.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/Documentation/dev/build_windows_vs.md b/Documentation/dev/build_windows_vs.md index 1e8768a1708f..ed9cfb716ba0 100644 --- a/Documentation/dev/build_windows_vs.md +++ b/Documentation/dev/build_windows_vs.md @@ -67,7 +67,7 @@ Use CMake to generate a visual studio solution. 1. Open CMake-GUI, either by typing cmake-gui on the command propmpt or from the start-menu. 2. Enter the source and build directories -![alt text](./Documentation/dev/images/cmake1.png) +![cmake1](<./images/cmake1.png>) 3. Click [Configure] 4. You will now get a selection screen in which you can specify your "generator". Select the one you need. This guide was tested with Visual Studio 15 2017 Win64 in combination with the default options. @@ -101,7 +101,7 @@ To be able to use VTK in other project it first needs to be installed. 3. Hit [Configure] 4. Set the "CMKAE_INSTALL_PREFIX" directory. -![alt text](./Documentation/dev/images/cmake4.png) +![cmake4](<./images/cmake4.png>) 5. Click [Generate] @@ -114,12 +114,12 @@ In Visual Studio At this moment Visual Studio may FAIL because it is not allowed to create the installation folder. -![alt text](./Documentation/dev/images/adminerror1.png) +![adminerror1](<./images/adminerror1.png>) If this happens then you have two options: - Either repeat the previous steps with a different install directory in CMAKE -- Start Visual Studio as administrator by right-clicking on its icon and selecting "start as administrator". ![alt text](./Documentation/dev/images/vs4.png) +- Start Visual Studio as administrator by right-clicking on its icon and selecting "start as administrator". ![vs4](<./images/vs4.png>) After installation where VTK should have been installed in the specified installation directory. Something like the following directories should now exist: @@ -147,7 +147,7 @@ From [vtk-examples](https://kitware.github.io/vtk-examples/site/Cxx/) pick a sim 3. Click [Configure] 4. Verify that the VTK_DIR is set correctly. This folder should contain the file UseVTK.cmake -![alt text](./Documentation/dev/images/cmake5.png) +![cmake5](<./images/cmake5.png>) 5. Click [Configure] @@ -162,7 +162,7 @@ In visual sudio: 8. Select the example (HighlightPickedActor) as start-up project. (right click -> set as start-up project) 9. Run! -![alt text](./Documentation/dev/images/TestHighlightPickedActor.png) +![TestHighlightPickedActor](<./images/TestHighlightPickedActor.png>) If your program complains about missing DLLs then check if the .dll path (last step of INSTALL section) was added correctly. -- GitLab From 19048d569c048b461de90f9438f71a4459f13da0 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Tue, 19 Apr 2022 10:09:21 -0400 Subject: [PATCH 0007/1015] vtkModule: support module sources outside of the project The `file(RELATIVE_PATH)` computation for such modules ends up also moving it out of the binary tree in the same way. Instead, reroot these paths to be under the current binary directory. --- CMake/vtkModule.cmake | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/CMake/vtkModule.cmake b/CMake/vtkModule.cmake index 0b34c02d49ad..f240ab9928f7 100644 --- a/CMake/vtkModule.cmake +++ b/CMake/vtkModule.cmake @@ -2631,6 +2631,16 @@ function (vtk_module_build) get_filename_component(_vtk_build_module_dir "${_vtk_build_module_file}" DIRECTORY) file(RELATIVE_PATH _vtk_build_module_subdir "${CMAKE_SOURCE_DIR}" "${_vtk_build_module_dir}") + + # Check if the source for this module is outside of `CMAKE_SOURCE_DIR`. + # Place it under `CMAKE_BINARY_DIR` more meaningfully if so. + if (_vtk_build_module_dir MATCHES "\\.\\./") + file(RELATIVE_PATH _vtk_build_module_subdir "${CMAKE_BINARY_DIR}" "${CMAKE_CURRENT_BINARY_DIR}") + get_property(_vtk_build_module_library_name GLOBAL + PROPERTY "_vtk_module_${_vtk_build_module}_library_name") + string(APPEND _vtk_build_module_subdir "/${_vtk_build_module_library_name}") + endif () + add_subdirectory( "${CMAKE_SOURCE_DIR}/${_vtk_build_module_subdir}" "${CMAKE_BINARY_DIR}/${_vtk_build_module_subdir}") @@ -2907,6 +2917,15 @@ function (vtk_module_build) get_filename_component(_vtk_build_module_dir "${_vtk_build_module_file}" DIRECTORY) file(RELATIVE_PATH _vtk_build_module_subdir "${CMAKE_SOURCE_DIR}" "${_vtk_build_module_dir}") if (EXISTS "${CMAKE_SOURCE_DIR}/${_vtk_build_module_subdir}/${_vtk_build_TEST_DIRECTORY_NAME}") + # Check if the source for this module is outside of `CMAKE_SOURCE_DIR`. + # Place it under `CMAKE_BINARY_DIR` more meaningfully if so. + if (_vtk_build_module_dir MATCHES "\\.\\./") + file(RELATIVE_PATH _vtk_build_module_subdir "${CMAKE_BINARY_DIR}" "${CMAKE_CURRENT_BINARY_DIR}") + get_property(_vtk_build_module_library_name GLOBAL + PROPERTY "_vtk_module_${_vtk_build_test}_library_name") + string(APPEND _vtk_build_module_subdir "/${_vtk_build_module_library_name}") + endif () + get_property(_vtk_build_test_labels GLOBAL PROPERTY "_vtk_module_${_vtk_build_test}_test_labels") add_subdirectory( -- GitLab From b0e18caae8a143e3ec9bba0749c77a840eb4eb86 Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Tue, 19 Apr 2022 14:32:15 -0400 Subject: [PATCH 0008/1015] vtkStripper becomes ghost aware. If there are ghost cells in the input, `vtkStripper` now skips them and strips them out of the output. Ghost points remain untouched. --- Filters/Core/Testing/Cxx/TestStripper.cxx | 48 ++++++++++++++++++++--- Filters/Core/vtkStripper.cxx | 22 ++++++++++- Filters/Core/vtkStripper.h | 3 ++ 3 files changed, 66 insertions(+), 7 deletions(-) diff --git a/Filters/Core/Testing/Cxx/TestStripper.cxx b/Filters/Core/Testing/Cxx/TestStripper.cxx index 09bed804f7bb..01de00b56492 100644 --- a/Filters/Core/Testing/Cxx/TestStripper.cxx +++ b/Filters/Core/Testing/Cxx/TestStripper.cxx @@ -13,14 +13,18 @@ =========================================================================*/ #include "vtkCellArray.h" +#include "vtkCellData.h" +#include "vtkDataSetAttributes.h" #include "vtkIntersectionPolyDataFilter.h" #include "vtkPolyDataMapper.h" #include "vtkSmartPointer.h" #include "vtkSphereSource.h" #include "vtkStripper.h" +#include "vtkUnsignedCharArray.h" + #include -bool TestSpherePlaneIntersection(bool joinSegments) +bool TestSpherePlaneIntersection(bool joinSegments, bool addGhostArray) { // Sphere vtkSmartPointer sphereSource = vtkSmartPointer::New(); @@ -49,6 +53,12 @@ bool TestSpherePlaneIntersection(bool joinSegments) PlaneCells->InsertCellPoint(3); PlaneCells->InsertCellPoint(2); + // Inserting a ghost + PlaneCells->InsertNextCell(3); + PlaneCells->InsertCellPoint(1); + PlaneCells->InsertCellPoint(3); + PlaneCells->InsertCellPoint(2); + // Create the polydata from points and faces vtkSmartPointer Plane = vtkSmartPointer::New(); Plane->SetPoints(PlanePoints); @@ -63,9 +73,24 @@ bool TestSpherePlaneIntersection(bool joinSegments) intersectionPolyDataFilter->SetInputData(1, Plane); intersectionPolyDataFilter->Update(); + vtkNew sphere; + sphere->ShallowCopy(intersectionPolyDataFilter->GetOutputDataObject(0)); + + if (addGhostArray) + { + vtkNew ghosts; + ghosts->SetName(vtkDataSetAttributes::GhostArrayName()); + ghosts->SetNumberOfValues(sphere->GetNumberOfCells()); + for (vtkIdType cellId = 0; cellId < sphere->GetNumberOfCells(); ++cellId) + { + ghosts->SetValue(cellId, cellId % 5 ? 0 : vtkDataSetAttributes::DUPLICATECELL); + } + sphere->GetCellData()->AddArray(ghosts); + } + // Get the polylines from the segments vtkSmartPointer stripper = vtkSmartPointer::New(); - stripper->SetInputConnection(intersectionPolyDataFilter->GetOutputPort()); + stripper->SetInputData(sphere); if (joinSegments) { @@ -76,11 +101,19 @@ bool TestSpherePlaneIntersection(bool joinSegments) vtkSmartPointer intersectionMapper = vtkSmartPointer::New(); intersectionMapper->SetInputConnection(stripper->GetOutputPort()); + if (addGhostArray) + { + if (intersectionMapper->GetInput()->GetNumberOfLines() != 8) + { + return false; + } + return true; + } if (joinSegments) { if (intersectionMapper->GetInput()->GetNumberOfLines() != 2) { - return true; + return false; } } else @@ -96,12 +129,17 @@ bool TestSpherePlaneIntersection(bool joinSegments) int TestStripper(int, char*[]) { - if (!TestSpherePlaneIntersection(false)) + if (!TestSpherePlaneIntersection(false, false)) + { + return EXIT_FAILURE; + } + + if (!TestSpherePlaneIntersection(true, false)) { return EXIT_FAILURE; } - if (!TestSpherePlaneIntersection(true)) + if (!TestSpherePlaneIntersection(false, true)) { return EXIT_FAILURE; } diff --git a/Filters/Core/vtkStripper.cxx b/Filters/Core/vtkStripper.cxx index 2436f722b8a7..5b8542a39b84 100644 --- a/Filters/Core/vtkStripper.cxx +++ b/Filters/Core/vtkStripper.cxx @@ -16,6 +16,7 @@ #include "vtkCellArray.h" #include "vtkCellData.h" +#include "vtkDataSetAttributes.h" #include "vtkIdList.h" #include "vtkIdTypeArray.h" #include "vtkInformation.h" @@ -24,6 +25,7 @@ #include "vtkPointData.h" #include "vtkPolyData.h" #include "vtkSmartPointer.h" +#include "vtkUnsignedCharArray.h" vtkStandardNewMacro(vtkStripper); @@ -97,7 +99,9 @@ int vtkStripper::RequestData(vtkInformation* vtkNotUsed(request), // pass through verts output->CopyStructure(input); output->GetPointData()->PassData(input->GetPointData()); - output->GetCellData()->PassData(input->GetCellData()); + vtkCellData* outCD = output->GetCellData(); + outCD->PassData(input->GetCellData()); + outCD->RemoveArray(vtkDataSetAttributes::GhostArrayName()); mesh->Delete(); vtkDebugMacro(<< "No data to strip!"); return 1; @@ -129,6 +133,8 @@ int vtkStripper::RequestData(vtkInformation* vtkNotUsed(request), newfdStrips->Allocate(3 * inNumPolys + 3); } + vtkUnsignedCharArray* ghostCells = input->GetCellData()->GetGhostArray(); + vtkIdTypeArray* OriginalCellIds = nullptr; vtkIdTypeArray* origPolyIds = nullptr; vtkIdTypeArray* origLineIds = nullptr; @@ -161,6 +167,10 @@ int vtkStripper::RequestData(vtkInformation* vtkNotUsed(request), cellId = inNumVerts + inNumLines + inNumPolys; for (inStrips->InitTraversal(); inStrips->GetNextCell(numStripPts, stripPts);) { + if (ghostCells && ghostCells->GetValue(cellId)) + { + continue; + } newStrips->InsertNextCell(numStripPts, stripPts); if (this->PassCellDataAsFieldData) { @@ -192,6 +202,10 @@ int vtkStripper::RequestData(vtkInformation* vtkNotUsed(request), cellId = inNumVerts; for (inLines->InitTraversal(); inLines->GetNextCell(numLinePts, linePts); cellId++) { + if (ghostCells && ghostCells->GetValue(cellId)) + { + continue; + } if (numLinePts > 2) { newLines->InsertNextCell(numLinePts, linePts); @@ -211,7 +225,7 @@ int vtkStripper::RequestData(vtkInformation* vtkNotUsed(request), visited = new char[numCells]; for (i = 0; i < numCells; i++) { - visited[i] = 0; + visited[i] = ghostCells && ghostCells->GetValue(i) ? 1 : 0; } // Loop over all cells and find one that hasn't been visited. @@ -229,6 +243,10 @@ int vtkStripper::RequestData(vtkInformation* vtkNotUsed(request), vtkIdType progressInterval = numCells / 20 + 1; for (cellId = 0; cellId < numCells && !abort; cellId++) { + if (ghostCells && ghostCells->GetValue(cellId)) + { + continue; + } if (!(cellId % progressInterval)) { this->UpdateProgress((float)cellId / numCells); diff --git a/Filters/Core/vtkStripper.h b/Filters/Core/vtkStripper.h index cf189f5717bb..c01f8119849b 100644 --- a/Filters/Core/vtkStripper.h +++ b/Filters/Core/vtkStripper.h @@ -44,6 +44,9 @@ * the input. * The field data order is same as cell data i.e. (verts,line,polys,tsrips). * + * If there is a ghost cell array in the input, the ghost array is discarded. + * Any cell tagged as ghost is skipped when stripping. Ghost points are kept. + * * @warning * If triangle strips or poly-lines exist in the input data they will * be passed through to the output data. This filter will only construct -- GitLab From a7492f2d9135cd1249d514d1435585571352e7a1 Mon Sep 17 00:00:00 2001 From: Andrew Maclean Date: Thu, 21 Apr 2022 10:31:02 +1000 Subject: [PATCH 0009/1015] Reformatted build_windows_vs.md added a link to build.md --- Documentation/dev/build_windows_vs.md | 83 ++++++++++++--------------- 1 file changed, 38 insertions(+), 45 deletions(-) diff --git a/Documentation/dev/build_windows_vs.md b/Documentation/dev/build_windows_vs.md index ed9cfb716ba0..194ed73169d4 100644 --- a/Documentation/dev/build_windows_vs.md +++ b/Documentation/dev/build_windows_vs.md @@ -1,13 +1,14 @@ -Building VTK using Visual Studio on Windows -============================================= +# Building VTK using Visual Studio on Windows -This page describes how to build and install VTK using Visual Studio on Windows in recipe-style fashion. +## Introduction + +This page describes how to build and install VTK using Visual Studio on Windows in recipe-style fashion. It is also possible to build VTK on Windows without using Visual Studio directly, this is covered in [Building VTK](<./build.md>). Adapted from the [Paraview build instructions](https://gitlab.kitware.com/paraview/paraview/-/blob/master/Documentation/dev/build.md) and [VTK wiki](https://vtk.org/Wiki/VTK/Building/Windows). Inspired by [This video](https://www.youtube.com/watch?v=IgvbhyDh8r0) -Prerequisites -============= +## Prerequisites + For this guide you will need to following: 1. CMake [CMake](http://www.cmake.org/) version 3.10 or higher and a working compiler. @@ -16,7 +17,6 @@ For this guide you will need to following: If you have these then you can skip the rest of this section and proceed to BUILD SOLUTION. - ### 1. Get CMake CMake is a tool that makes cross-platform building simple. On several systems it will probably be already installed. If it is not, please use the following instructions to install it. @@ -25,7 +25,6 @@ Add CMake to your PATH environment variable if you downloaded an archive and not This guide was tested using cmake 3.13.4 64bit installed by dowloading the .msi installer. [cmake-3.13.4-win64-x64.msi] - ### 2. Get Visual Studio This guide uses Visual Studio / C++ as IDE and compiler. Visual studio can be installed from [Download](https://visualstudio.microsoft.com/vs/community/). @@ -40,8 +39,8 @@ You will probably want the latest one (highest version number) unless you have a Alternatively the source-code can be obtained from the repository as well. This is recommended only if you intent to make changes and contribute to VTK. -BUILD SOLUTION -=============== +## BUILD SOLUTION + Use CMake to create a solution that visual studio can open. ### Prepare folder structure @@ -52,7 +51,7 @@ Use CMake to create a solution that visual studio can open. You should now have something like: -``` +``` cmd c:\data\cpp\vtk\build <--empty c:\data\cpp\vtk\src c:\data\cpp\vtk\src\Accelerators @@ -67,12 +66,12 @@ Use CMake to generate a visual studio solution. 1. Open CMake-GUI, either by typing cmake-gui on the command propmpt or from the start-menu. 2. Enter the source and build directories -![cmake1](<./images/cmake1.png>) + ![cmake1](<./images/cmake1.png>) 3. Click [Configure] 4. You will now get a selection screen in which you can specify your "generator". Select the one you need. This guide was tested with Visual Studio 15 2017 Win64 in combination with the default options. -This will take some time. You may want to spend this time usefull by reading [cmake overview](https://cmake.org/overview/) and [cmake example](https://cmake.org/examples) and even the [cmake tutorial](https://cmake.org/cmake-tutorial/). + This will take some time. You may want to spend this time usefull by reading [cmake overview](https://cmake.org/overview/) and [cmake example](https://cmake.org/examples) and even the [cmake tutorial](https://cmake.org/cmake-tutorial/). 5. We are now presented with a few options that can be turned on or off as desired. For this guide the only change made is to - Check the box after CMAKE_CXX_MP_FLAG. This enables building using multi-core. @@ -92,8 +91,8 @@ Again, this will take a while [About ten mintues on a 2-core i7]. After this there should be a folder /build/bin/Release containing the created .dll libraries. -INSTALL -======== +## INSTALL + To be able to use VTK in other project it first needs to be installed. 1. Start CMake-gui (again) @@ -101,42 +100,39 @@ To be able to use VTK in other project it first needs to be installed. 3. Hit [Configure] 4. Set the "CMKAE_INSTALL_PREFIX" directory. -![cmake4](<./images/cmake4.png>) - + ![cmake4](<./images/cmake4.png>) 5. Click [Generate] 6. Click [Open Project] -In Visual Studio - -7. Build the "ALL_BUILD" project again. Should be very quick this time. -8. Build the "INSTALL" project. + In Visual Studio -At this moment Visual Studio may FAIL because it is not allowed to create the installation folder. + 1. Build the "ALL_BUILD" project again. Should be very quick this time. + 2. Build the "INSTALL" project. -![adminerror1](<./images/adminerror1.png>) + At this moment Visual Studio may FAIL because it is not allowed to create the installation folder. + ![adminerror1](<./images/adminerror1.png>) -If this happens then you have two options: -- Either repeat the previous steps with a different install directory in CMAKE -- Start Visual Studio as administrator by right-clicking on its icon and selecting "start as administrator". ![vs4](<./images/vs4.png>) + If this happens then you have two options: -After installation where VTK should have been installed in the specified installation directory. Something like the following directories should now exist: + - Either repeat the previous steps with a different install directory in CMAKE + - Start Visual Studio as administrator by right-clicking on its icon and selecting "start as administrator". ![vs4](<./images/vs4.png>) -``` -c:\program file\VTK\bin -c:\program file\VTK\include -c:\program file\VTK\lib -c:\program file\VTK\share -``` + After installation where VTK should have been installed in the specified installation directory. Something like the following directories should now exist: -The /bin folder contains all the .dll files that are needed to run an application using VTK. In order to be able to find these files it needs to be added to the path environment variable. + ``` cmd + c:\program file\VTK\bin + c:\program file\VTK\include + c:\program file\VTK\lib + c:\program file\VTK\share + ``` -9. Add the folder /bin folder to the windows path. [start -> Edit the system environment variables -> Advanced -> Environment Variables -> Path -> Edit -> New] + The /bin folder contains all the .dll files that are needed to run an application using VTK. In order to be able to find these files it needs to be added to the path environment variable. +7. Add the folder /bin folder to the windows path. [start -> Edit the system environment variables -> Advanced -> Environment Variables -> Path -> Edit -> New] -TEST WITH AN EXAMPLE -===================== +## TEST WITH AN EXAMPLE If everything went well then it should now be possible to compile and run the one of the C++ examples. @@ -147,28 +143,25 @@ From [vtk-examples](https://kitware.github.io/vtk-examples/site/Cxx/) pick a sim 3. Click [Configure] 4. Verify that the VTK_DIR is set correctly. This folder should contain the file UseVTK.cmake -![cmake5](<./images/cmake5.png>) - + ![cmake5](<./images/cmake5.png>) 5. Click [Configure] 6. Click [Generate] -If you get an error then make sure that the file-names specified in CMakeLists.txt match the source file. Visual studio used .cpp as extension for C++ files while the cmake files contain references to .cxx + If you get an error then make sure that the file-names specified in CMakeLists.txt match the source file. Visual studio used .cpp as extension for C++ files while the cmake files contain references to .cxx 7. Click [Open Project] -In visual sudio: + In visual sudio: -8. Select the example (HighlightPickedActor) as start-up project. (right click -> set as start-up project) -9. Run! + 1. Select the example (HighlightPickedActor) as start-up project. (right click -> set as start-up project) + 2. Run! ![TestHighlightPickedActor](<./images/TestHighlightPickedActor.png>) If your program complains about missing DLLs then check if the .dll path (last step of INSTALL section) was added correctly. - -Guide created using --------------------- +## Guide created using - VTK 8.2.0 - CMake 3.13.4 -- GitLab From 3b15d76424b0bace314f4988c4f756c8e7cac7db Mon Sep 17 00:00:00 2001 From: Andrew Maclean Date: Thu, 21 Apr 2022 10:56:21 +1000 Subject: [PATCH 0010/1015] A simplified more concise rewrite of getting_started_linux.md --- Documentation/dev/getting_started_linux.md | 251 +++++---------------- 1 file changed, 55 insertions(+), 196 deletions(-) diff --git a/Documentation/dev/getting_started_linux.md b/Documentation/dev/getting_started_linux.md index 481e13383522..17955dfe53a0 100644 --- a/Documentation/dev/getting_started_linux.md +++ b/Documentation/dev/getting_started_linux.md @@ -3,241 +3,100 @@ ## Contents 1. [Introduction](#introduction) -2. [Preliminary Steps](#preliminary-steps) - 1. [Update your installation](#update-your-installation) - 2. [Setup Python](#setup-python) -3. [Create local source and build folders for VTK](#create-local-source-and-build-folders-for-vtk) -4. [Build VTK](#build-vtk) -5. [Testing](#testing) -6. [Additional Comments](#additional-comments) +2. [Tools Needed](#tools-needed) +3. [Build VTK](#build-vtk) +4. [Verification](#verification) ## Introduction These instructions will will lead you step by step through the process of setting up VTK in your home folder. -After completing these instructions, you will have a basic VTK build with Python wrappings. From this base you can then add more options and build settings as outlined in the full documentation [Building VTK](https://gitlab.kitware.com/vtk/vtk/-/blob/master/Documentation/dev/build.md). +The instructions are based on Debian versions of Linux implementations. However work-arounds for other implementations are easily achieved. + +After completing these instructions, you will have a basic VTK build with Python wrappings. From this base you can then add more options and build settings as outlined in the full documentation [Building VTK](<./build.md>). We are assuming that you are working in your home folder and the directory structure in your home folder will be: ``` text -|-- Kitware - |-- build - |-- src - |-- test - +|-- dev + |-- vtk + |-- build - where vtk will be built + |-- src - the vtk source files + |-- my-tests - a place to put some test files ``` -There will be a `VTK` folder in each of `build`, `src`, `test`. The advantage of this structure is a clear functional separation between sources and builds and it also allows adding future sources and builds such as for **ParaView** and the **vtk-examples** in their own sub-folders. - -## Preliminary Steps +## Tools Needed -You will need **`sudo`** rights to use apt. - -### Update your installation +Make sure we have the tools needed to build VTK, also some Python tools: ``` bash -sudo apt-get update -sudo apt-get upgrade +sudo apt install build-essential cmake mesa-common-dev mesa-utils freeglut3-dev python3-dev python3-venv git-core ninja-build ``` -Make sure we have the tools needed to build VTK: - -``` bash -sudo apt-get install build-essential libncurses5-dev libxext-dev mesa-common-dev mesa-utils freeglut3-dev python3-dev python3-venv git-core gitk git-gui ninja-build -``` - -In your environment e.g. `~/.bashrc` set: - -``` bash -alias ninja=ninja-build -``` +The Python tools are optional but may be needed if you decide to use a virtual environment in future. -For CMake, it is best to download and install CMake from [Get the Software](https://cmake.org/download/), it's a good idea to make sure `cmake-gui` is installed. Note that, if you are building `cmake-gui`, Qt needs to be installed. This is the preferred option as you will get the latest version. +We will use `ninja`as a replacement for `make`. -The alternative is: +For CMake, the latest version is available from [Get the Software](https://cmake.org/download/), otherwise: ``` bash sudo apt-get install cmake cmake-gui ``` -Be aware this version may be an older release. - -### Setup Python - -We will use a virtual environment for VTK, let's call it `VTK`. - -If you are already in a virtual environment `deactivate` to make sure the correct version of python is being used. - -Create the virtual environment: - -``` bash -deactivate -python3 -m venv $HOME/venv/VTK -``` - -Activate and install the necessary components for VTK: - -``` bash -source $HOME/venv/VTK/bin/activate -python -m pip install --upgrade pip -pip install wheel -pip install Sphinx scipy numpy matplotlib pytz tzdata setuptools -deactivate -``` - -In future, if you want to upgrade packages: - -``` bash -source $HOME/venv/VTK/bin/activate -python -m pip install --upgrade pip -pip install --upgrade Sphinx scipy numpy matplotlib pytz tzdata setuptools wheel -deactivate -``` - -At this stage you have a virtual environment for VTK, test it: - -``` bash -source $HOME/venv/VTK/bin/activate -python -V -deactivate -``` - -## Create local source and build folders for VTK - -The source for building VTK will be in `~/Kitware/src/VTK`, the build for VTK will be in `~/Kitware/build/VTK` with any tests in `~/Kitware/tests/VTK`. - -``` bash -cd ~ -mkdir -p ~/Kitware/{src/VTK,build/VTK,tests/VTK} -``` +These instructions are using the system Python. If you use a different Python implementation or a virtual environment make sure the environment you use is activated. ## Build VTK -Check out the master using git: - -```bash -cd ~/Kitware/src -git clone --recursive https://gitlab.kitware.com/vtk/vtk.git VTK -``` - -**Note:** *An alternative is to download the [VTK Latest Release](https://vtk.org/download/), unpack it and move/copy the contents into `~/Kitware/src/VTK`.* - -Let's just do a minimal build, you can "build" on this later. -For more information see [Building VTK](https://gitlab.kitware.com/vtk/vtk/-/blob/master/Documentation/dev/build.md). - -So for CMake we need the following settings: - -* `BUILD_SHARED_LIBS`: `ON` - should be `ON` by default -* `VTK_ALL_NEW_OBJECT_FACTORY`: `ON` -* `VTK_ENABLE_WRAPPING`: `ON` - should be `ON` by default -* `VTK_WRAP_PYTHON`: `ON` - -We will use `cmake-gui` to do the VTK configuration. - -**Important:** *Before even configuring VTK for a build using CMake, make sure your Python virtual environment is activated.* +Here we create the folder structure, get the VTK source and build it. ``` bash -cd ~/Kitware/build/VTK -source $HOME/venv/VTK/bin/activate -cmake-gui ~/Kitware/src/VTK -``` - -Press `Configure`, specifying `Ninja` as the generator and then set the above settings to `ON`. Use `Search` to find the settings. - -Once you have set everything, press `Generate`. - -Exit and run `ninja`: - -``` bash -ninja +cd ~ +mkdir -p ~/dev/{vtk/{src,build},my-tests} +cd ~/dev/vtk/ +git clone --recursive https://gitlab.kitware.com/vtk/vtk.git src +cd ~/dev/vtk/build +cmake -S"~/dev/vtk/src" -DVTK_WRAP_PYTHON:STR=ON -GNinja +# Build using the generator specified in cmake. +cmake --build . ``` -**Note:** *If the build fails. Run cmake-gui again and set `VTK_PYTHON_OPTIONAL_LINK` to `OFF` then Configure, Generate, exit and run ninja again.* +## Verification -## Testing +Download a C++ and Python example and verify that your build of VTK works on them. -Go to [CylinderExample](https://kitware.github.io/vtk-examples/site/Cxx/GeometricObjects/CylinderExample/) and download the tarball, extract it, and move it into `Kitware/test/VTK` +Go to [CylinderExample](https://kitware.github.io/vtk-examples/site/Cxx/GeometricObjects/CylinderExample/) and download the tarball, extract it in to `~/dev/my-tests` -Create a file called `CylinderExample.py` in `Kitware/test/VTK`, mark it executable (if you want) and open it in a text editor. Go to the python version of [CylinderExample](https://kitware.github.io/vtk-examples/site/Python/GeometricObjects/CylinderExample/) and copy it into your `CylinderExample.py` and save it. +In the same folder, `~/dev/my-tests`, create a file called `CylinderExample.py` and mark it executable. Go to the python version of [CylinderExample](https://kitware.github.io/vtk-examples/site/Python/GeometricObjects/CylinderExample/) and copy it into your `CylinderExample.py` and save it. -We need to pick up where the vtk build is and where the lib is: +Now test using `vtkpython`, `python3` and then build and test the C++ version: ``` bash -export VTK_DIR=$HOME/Kitware/build/VTK -source $VTK_DIR/unix_path.sh -alias vtkpython=$VTK_DIR/bin/vtkpython -``` - -Now go to the Testing folder and build the test: - -``` bash -cd ~/Kitware/test/VTK/CylinderExample/build -cmake-gui .. -``` - -Press `Configure`, specifying `Ninja` as the generator then press `Generate` and exit, then: - -``` bash -ninja -./CylinderExample -``` - -For Python, you can use either `python` or `vtkpython`: - -``` bash -cd ~/Kitware/test/VTK -python CylinderExample.py +cd ~/dev/my-tests +# Set your environment. +export VTK_DIR=$HOME/Kitware/vtk/build +export PYTHONPATH=~/dev/vtk/build/lib/python3.9/site-packages:PYTHONPATH +alias vtkpython=~/dev/vtk/build/bin/vtkpython +# Test vtkpython. vtkpython CylinderExample.py +# Test Python. +python3 CylinderExample.py +# Build the C++ version. +cd ~/dev/my-tests/CylinderExample/build +cmake -S".." -GNinja +# Build using the generator specified in cmake. +cmake --build . +# Test the C++ build. +./CylinderExample ``` -If the CylinderExample is executable: - -``` bash -./CylinderExample.py -``` - -## Additional Comments - -You **must** set the environment as follows: - -``` bash -source $HOME/venv/VTK/bin/activate -export VTK_DIR=$HOME/Kitware/build/VTK -source $VTK_DIR/unix_path.sh -alias vtkpython=$VTK_DIR/bin/vtkpython -``` - -This can be put into a bash script that you can source. - -Here is an example: - -``` bash -# Set the correct environment when using VTK -# -source $HOME/venv/VTK/bin/activate -export VTK_DIR=$HOME/Kitware/build/VTK -if [ -f $VTK_DIR/unix_path.sh ] -then - source $VTK_DIR/unix_path.sh -else - # Note: x86_64-linux-gnu and python3.9 depend on your implementation - # and may be different from the values here. - export LD_LIBRARY_PATH=$VTK_DIR/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH - export PYTHONPATH=$VTK_DIR/lib/x86_64-linux-gnu/python3.10/site-packages:$PYTHONPATH -fi -alias vtkpython=$VTK_DIR/bin/vtkpython -``` - -Copy this into a file called `VTK.sh` and make it executable. A good place to put this would be in `~/Kitware`. Then you can just: - -``` bash -source ~/Kitware/VTK.sh -``` +Note: -Thereby setting your VTK environment for whenever you need to: +- `PYTHONPATH` is only needed if you are using the python executable e.g. `python3`. It is not needed if `vtkpython` is used. +- With respect to `PYTHONPATH` you may have a different Python version so check your path. +- `VTK_DIR` allows cmake to find where VTK is. When you develop your own code you can just use: -* build VTK -* build your own code -* run VTK Python scripts + ``` text + -DVTK_DIR="" + ``` -If you use an IDE like PyCharm, set the Virtual Environment to the existing VTK Virtual Environment e.g. `~/venv/VTK/bin/python` and add the path to the VTK site packages in the interpreter paths, e.g.: `~/Kitware/build/VTK/lib/x86_64-linux-gnu/python3.9/site-packages` + as a cmake option. -- GitLab From 08d3105f1c5f5cdd115a883a66cdb5caf8090610 Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Wed, 20 Apr 2022 17:01:02 -0400 Subject: [PATCH 0011/1015] vtkGenerateGlobalIds: respecting input HIDDENPOINT ghosts `vtkGenerateGlobalIds` used to dump input hidden ghost points while it was tagging duplicate points at the interface between the input partitions. It now keeps hidden ghost points and ignores them when tagging duplicate points. --- .../Testing/Cxx/TestGenerateGlobalIds.cxx | 54 ++++++++++++++-- Filters/ParallelDIY2/vtkGenerateGlobalIds.cxx | 64 +++++++++++++++++-- 2 files changed, 107 insertions(+), 11 deletions(-) diff --git a/Filters/ParallelDIY2/Testing/Cxx/TestGenerateGlobalIds.cxx b/Filters/ParallelDIY2/Testing/Cxx/TestGenerateGlobalIds.cxx index c3eee29baf2a..16726c95853e 100644 --- a/Filters/ParallelDIY2/Testing/Cxx/TestGenerateGlobalIds.cxx +++ b/Filters/ParallelDIY2/Testing/Cxx/TestGenerateGlobalIds.cxx @@ -16,6 +16,7 @@ #include "vtkCellData.h" #include "vtkCommunicator.h" #include "vtkDataSet.h" +#include "vtkDataSetAttributes.h" #include "vtkExtentTranslator.h" #include "vtkGenerateGlobalIds.h" #include "vtkIdTypeArray.h" @@ -130,6 +131,22 @@ bool ValidateDataset(vtkMultiBlockDataSet* mb, vtkMultiProcessController* contr, return true; } +bool ValidateOutputHiddenGhosts(vtkUnsignedCharArray* ghosts) +{ + vtkIdType numberOfGhosts = 0; + for (vtkIdType id = 0; id < ghosts->GetNumberOfValues(); ++id) + { + numberOfGhosts += (ghosts->GetValue(id) & vtkDataSetAttributes::HIDDENPOINT) != 0; + } + + if (numberOfGhosts != ghosts->GetNumberOfValues() / 2) + { + vtkLogF(ERROR, "incorrect hidden ghosts in output"); + return false; + } + + return true; +} } int TestGenerateGlobalIds(int argc, char* argv[]) @@ -172,14 +189,39 @@ int TestGenerateGlobalIds(int argc, char* argv[]) // test a dataset with 1 block per rank. if (auto dataset = CreateDataSet(contr, 1, 1)) { - vtkNew generator; - generator->SetInputDataObject(dataset); - generator->Update(); + { + vtkNew generator; + generator->SetInputDataObject(dataset); + generator->Update(); + + if (!ValidateDataset( + vtkMultiBlockDataSet::SafeDownCast(generator->GetOutputDataObject(0)), contr, 1, 1)) + { + status = EXIT_FAILURE; + } + } - if (!ValidateDataset( - vtkMultiBlockDataSet::SafeDownCast(generator->GetOutputDataObject(0)), contr, 1, 1)) { - status = EXIT_FAILURE; + int rank = contr->GetLocalProcessId(); + vtkNew inputGhosts; + inputGhosts->SetName(vtkDataSetAttributes::GhostArrayName()); + auto block = vtkDataSet::SafeDownCast(dataset->GetBlock(rank)); + inputGhosts->SetNumberOfValues(block->GetNumberOfPoints()); + for (vtkIdType pointId = 0; pointId < inputGhosts->GetNumberOfValues(); ++pointId) + { + inputGhosts->SetValue(pointId, pointId % 2 ? 0 : vtkDataSetAttributes::HIDDENPOINT); + } + block->GetPointData()->AddArray(inputGhosts); + vtkNew generator; + generator->SetInputDataObject(dataset); + generator->Update(); + + auto outMB = vtkMultiBlockDataSet::SafeDownCast(generator->GetOutputDataObject(0)); + auto outDS = vtkDataSet::SafeDownCast(outMB->GetBlock(rank)); + if (!ValidateOutputHiddenGhosts(outDS->GetPointData()->GetGhostArray())) + { + status = EXIT_FAILURE; + } } } diff --git a/Filters/ParallelDIY2/vtkGenerateGlobalIds.cxx b/Filters/ParallelDIY2/vtkGenerateGlobalIds.cxx index bd31e1e34f5d..67d0865a7a3e 100644 --- a/Filters/ParallelDIY2/vtkGenerateGlobalIds.cxx +++ b/Filters/ParallelDIY2/vtkGenerateGlobalIds.cxx @@ -150,6 +150,7 @@ static bool GenerateIds(vtkDataObject* dobj, vtkGenerateGlobalIds* self, bool ce (cell_centers && ds->GetNumberOfCells() == 0); }), datasets.end()); + const auto points = vtkDIYUtilities::ExtractPoints(datasets, cell_centers); vtkLogEndScope("extract points"); @@ -173,7 +174,7 @@ static bool GenerateIds(vtkDataObject* dobj, vtkGenerateGlobalIds* self, bool ce if (lid < points.size() && points[lid] != nullptr) { assert(datasets[lid] != nullptr); - block->Initialize(gids[lid], points[lid], datasets[lid]); + block->Initialize(gids[lid], points[lid], datasets[lid], cell_centers); } auto link = new diy::RegularContinuousLink(3, gdomain, gdomain); @@ -277,6 +278,41 @@ static bool GenerateIds(vtkDataObject* dobj, vtkGenerateGlobalIds* self, bool ce namespace { +struct CopyHiddenGhostPointsWorker +{ + CopyHiddenGhostPointsWorker( + vtkUnsignedCharArray* inputGhosts, vtkUnsignedCharArray* outputGhosts, bool cell_centers) + : InputGhosts(inputGhosts) + , OutputGhosts(outputGhosts) + { + if (cell_centers) + { + this->HiddenGhost = vtkDataSetAttributes::HIDDENCELL; + } + else + { + this->HiddenGhost = vtkDataSetAttributes::HIDDENPOINT; + } + } + + void operator()(vtkIdType startId, vtkIdType endId) + { + auto inputGhostsRange = vtk::DataArrayValueRange<1>(this->InputGhosts); + auto outputGhostsRange = vtk::DataArrayValueRange<1>(this->OutputGhosts); + for (vtkIdType id = startId; id < endId; ++id) + { + if (inputGhostsRange[id] & this->HiddenGhost) + { + outputGhostsRange[id] = inputGhostsRange[id]; + } + } + } + + vtkUnsignedCharArray* InputGhosts; + vtkUnsignedCharArray* OutputGhosts; + unsigned char HiddenGhost; +}; + /** * This is the point type that keeps the coordinates for each point in the * dataset as well as enough information to track where that point came from so @@ -469,13 +505,18 @@ public: vtkSmartPointer GlobalIds; vtkSmartPointer GhostArray; - void Initialize(int self_gid, vtkPoints* points, vtkDataSet* dataset) + void Initialize(int self_gid, vtkPoints* points, vtkDataSet* dataset, bool cell_centers) { this->Dataset = dataset; this->Elements = ElementT::GetElements(self_gid, points, dataset); if (dataset) { + unsigned char duplicateGhost = vtkDataSetAttributes::DUPLICATEPOINT; + if (cell_centers) + { + duplicateGhost = vtkDataSetAttributes::DUPLICATECELL; + } this->GlobalIds = vtkSmartPointer::New(); this->GlobalIds->SetName( ElementT::attr_type == vtkDataObject::POINT ? "GlobalPointIds" : "GlobalCellIds"); @@ -486,7 +527,14 @@ public: this->GhostArray = vtkSmartPointer::New(); this->GhostArray->SetName(vtkDataSetAttributes::GhostArrayName()); this->GhostArray->SetNumberOfTuples(points->GetNumberOfPoints()); - this->GhostArray->FillValue(vtkDataSetAttributes::DUPLICATEPOINT); + this->GhostArray->FillValue(duplicateGhost); + + if (vtkUnsignedCharArray* inputGhostPoints = + dataset->GetAttributes(ElementT::attr_type)->GetGhostArray()) + { + ::CopyHiddenGhostPointsWorker worker(inputGhostPoints, this->GhostArray, cell_centers); + vtkSMPTools::For(0, this->GhostArray->GetNumberOfValues(), worker); + } // we're only adding ghost points, not cells. if (ElementT::attr_type == vtkDataObject::POINT) @@ -547,11 +595,17 @@ public: return; } + // We will tag any ghost that is not a hidden point in the input ghost array + auto ghosts = vtk::DataArrayValueRange<1>(this->GhostArray); + for (const auto& pair : inmessage) { for (const auto& data : pair.second) { - this->GhostArray->SetTypedComponent(data.elem_id, 0, 0); + if (!(ghosts[data.elem_id] & vtkDataSetAttributes::HIDDENPOINT)) + { + ghosts[data.elem_id] = 0; + } } } @@ -559,7 +613,7 @@ public: this->UniqueElementsCount = 0; for (vtkIdType cc = 0, max = this->GhostArray->GetNumberOfTuples(); cc < max; ++cc) { - if (this->GhostArray->GetTypedComponent(cc, 0) == 0) + if (ghosts[cc] == 0) { this->GlobalIds->SetTypedComponent(cc, 0, this->UniqueElementsCount); this->UniqueElementsCount++; -- GitLab From 42522c2b48caeac21fcede6580c1a678ee3ea7c3 Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Wed, 20 Apr 2022 17:06:58 -0400 Subject: [PATCH 0012/1015] vtkThreshold: dumping input HIDDENCELL ghosts `vtkThreshold` used to copy input `HIDDENCELL` that can be present in structured data set types (`vtkImageData` for instance). Those cells do not need to be copied to the output, and copying them is actually a waste of memory and can lead downstream algorithm not expecting hidden cells to be faulty. Hidden ghost cells are now dumped. --- Filters/Core/Testing/Cxx/TestThreshold.cxx | 27 +++++++++++++++++++--- Filters/Core/vtkThreshold.cxx | 10 +++++++- 2 files changed, 33 insertions(+), 4 deletions(-) diff --git a/Filters/Core/Testing/Cxx/TestThreshold.cxx b/Filters/Core/Testing/Cxx/TestThreshold.cxx index f7d6b2a2f6bf..d1bdd3e127bd 100644 --- a/Filters/Core/Testing/Cxx/TestThreshold.cxx +++ b/Filters/Core/Testing/Cxx/TestThreshold.cxx @@ -12,7 +12,9 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +#include "vtkCellData.h" #include "vtkDataObject.h" +#include "vtkDataSetAttributes.h" #include "vtkFloatArray.h" #include "vtkImageData.h" #include "vtkNew.h" @@ -20,6 +22,7 @@ #include "vtkRTAnalyticSource.h" #include "vtkSmartPointer.h" #include "vtkThreshold.h" +#include "vtkUnsignedCharArray.h" #include "vtkUnstructuredGrid.h" int TestThreshold(int, char*[]) @@ -28,8 +31,26 @@ int TestThreshold(int, char*[]) // Test using different thresholding methods //--------------------------------------------------- vtkNew source; + + // We're setting a ghost array with one hidden ghost cell + // This cell should disappear after thresholding + source->Update(); + vtkIdType numberOfHiddenCells = 1; + + vtkNew ghostedWavelet; + ghostedWavelet->ShallowCopy(source->GetOutputDataObject(0)); + + vtkNew ghosts; + ghosts->SetName(vtkDataSetAttributes::GhostArrayName()); + ghosts->SetNumberOfValues(ghostedWavelet->GetNumberOfCells()); + ghosts->Fill(0); + + ghosts->SetValue(19, vtkDataSetAttributes::HIDDENCELL); + + ghostedWavelet->GetCellData()->AddArray(ghosts); + vtkNew filter; - filter->SetInputConnection(source->GetOutputPort()); + filter->SetInputData(ghostedWavelet); double L = 100.0; double U = 200.0; @@ -75,7 +96,7 @@ int TestThreshold(int, char*[]) filter->InvertOn(); filter->Update(); int invertedCellCount = filter->GetOutput()->GetNumberOfCells(); - if (invertedCellCount + thresholdedCellCount != totalCellCount) + if (invertedCellCount + thresholdedCellCount != totalCellCount - numberOfHiddenCells) { std::cerr << "Cell count and inverted cell count inconsistent" << std::endl; return EXIT_FAILURE; @@ -90,7 +111,7 @@ int TestThreshold(int, char*[]) filter->SetThresholdFunction(vtkThreshold::THRESHOLD_LOWER); filter->SetLowerThreshold(L); filter->Update(); - if (filter->GetOutput()->GetNumberOfCells() != 132) + if (filter->GetOutput()->GetNumberOfCells() != 131) { std::cerr << "Unexpected cell count after thresholding below" << std::endl; return EXIT_FAILURE; diff --git a/Filters/Core/vtkThreshold.cxx b/Filters/Core/vtkThreshold.cxx index 0ffa807effcb..5ec162a54593 100644 --- a/Filters/Core/vtkThreshold.cxx +++ b/Filters/Core/vtkThreshold.cxx @@ -21,6 +21,7 @@ #include "vtkCell.h" #include "vtkCellData.h" #include "vtkCellIterator.h" +#include "vtkDataSetAttributes.h" #include "vtkIdList.h" #include "vtkInformation.h" #include "vtkInformationVector.h" @@ -28,6 +29,7 @@ #include "vtkObjectFactory.h" #include "vtkPointData.h" #include "vtkStreamingDemandDrivenPipeline.h" +#include "vtkUnsignedCharArray.h" #include "vtkUnstructuredGrid.h" #include @@ -227,6 +229,8 @@ int vtkThreshold::RequestData(vtkInformation* vtkNotUsed(request), int fieldAssociation = this->GetInputArrayAssociation(0, inputVector); bool usePointScalars = fieldAssociation == vtkDataObject::FIELD_ASSOCIATION_POINTS; + vtkUnsignedCharArray* ghosts = input->GetCellData()->GetGhostArray(); + // Check that the scalars of each cell satisfy the threshold criterion vtkSmartPointer it = vtkSmartPointer::Take(input->NewCellIterator()); @@ -239,7 +243,11 @@ int vtkThreshold::RequestData(vtkInformation* vtkNotUsed(request), { this->UpdateProgress(index * 1.0 / numberOfCells); } - index++; + if (ghosts && ghosts->GetValue(index++) & vtkDataSetAttributes::HIDDENCELL) + { + continue; + } + int cellType = it->GetCellType(); if (cellType == VTK_EMPTY_CELL) { -- GitLab From 4aa7e5184c4b603b6dd04241d7431a0cc51e9872 Mon Sep 17 00:00:00 2001 From: Andrew Maclean Date: Fri, 22 Apr 2022 10:42:48 +1000 Subject: [PATCH 0013/1015] Added instructions for a VTK release build Resolved comments --- Documentation/dev/build.md | 6 ++-- Documentation/dev/getting_started_linux.md | 42 ++++++++++++++++++---- 2 files changed, 39 insertions(+), 9 deletions(-) diff --git a/Documentation/dev/build.md b/Documentation/dev/build.md index 5d2330b1e9a6..9890951e5fb2 100644 --- a/Documentation/dev/build.md +++ b/Documentation/dev/build.md @@ -12,11 +12,11 @@ such as Python, Qt, CGNS, HDF5, etc. Some of these are included in the VTK source itself (e.g., HDF5), while others are expected to be present on the machine on which VTK is being built (e.g., Python, Qt). -## New Users +## Linux Getting Started -For new users of VTK or those wanting a quick setup, these instructions will be useful: +For new users of VTK or those wanting a quick setup on linux, these instructions will be useful: -* [Getting Started Using Linux](https://gitlab.kitware.com/vtk/vtk/-/blob/master/Documentation/dev/getting_started_linux.md). This will will lead you step by step through the process of setting up VTK with Python wrapping in your home folder. +* [Getting Started Using Linux](<./getting_started_linux.md>). This will will lead you step by step through the process of setting up VTK in your home folder. Once you get everything working, don't forget to come back and read the rest of this document. diff --git a/Documentation/dev/getting_started_linux.md b/Documentation/dev/getting_started_linux.md index 17955dfe53a0..d53cfa788b13 100644 --- a/Documentation/dev/getting_started_linux.md +++ b/Documentation/dev/getting_started_linux.md @@ -5,6 +5,8 @@ 1. [Introduction](#introduction) 2. [Tools Needed](#tools-needed) 3. [Build VTK](#build-vtk) + 1. [Using the VTK master](#using-the-vtk-master) + 2. [Using a VTK release](#using-a-vtk-release) 4. [Verification](#verification) ## Introduction @@ -25,6 +27,8 @@ We are assuming that you are working in your home folder and the directory struc |-- my-tests - a place to put some test files ``` +This folder structure assumes that the VTK master will be checked out. If you use a VTK release instead of the master, `src` will be replaced with the release name. + ## Tools Needed Make sure we have the tools needed to build VTK, also some Python tools: @@ -35,9 +39,9 @@ sudo apt install build-essential cmake mesa-common-dev mesa-utils freeglut3-dev The Python tools are optional but may be needed if you decide to use a virtual environment in future. -We will use `ninja`as a replacement for `make`. +We will use `ninja` as a replacement for `make`. -For CMake, the latest version is available from [Get the Software](https://cmake.org/download/), otherwise: +For CMake, the latest version is available from [CMake's download page][cmake-download], otherwise: ``` bash sudo apt-get install cmake cmake-gui @@ -47,7 +51,9 @@ These instructions are using the system Python. If you use a different Python im ## Build VTK -Here we create the folder structure, get the VTK source and build it. +Here we create the folder structure, get the VTK source and build it. + +### Using the VTK master ``` bash cd ~ @@ -60,20 +66,38 @@ cmake -S"~/dev/vtk/src" -DVTK_WRAP_PYTHON:STR=ON -GNinja cmake --build . ``` +### Using a VTK release + +We recommend using the latest release. + +``` bash +cd ~ +mkdir -p ~/dev/{vtk/build,my-tests} +``` + +Now download the VTK source from [VTK Releases][vtk-download], untar it into `~/dev/vtk/`. The resultant folder will have a name similar to `VTK-x.y.z` e.g. `VTK-9.2.0`. Remember to substitute `VTK-x.y.z` with the untarred folder name in the following steps. + +``` bash +cd ~/dev/vtk/build +cmake -S"~/dev/vtk/VTK-x.y.z" -DVTK_WRAP_PYTHON:STR=ON -GNinja +# Build using the generator specified in cmake. +cmake --build . +``` + ## Verification Download a C++ and Python example and verify that your build of VTK works on them. -Go to [CylinderExample](https://kitware.github.io/vtk-examples/site/Cxx/GeometricObjects/CylinderExample/) and download the tarball, extract it in to `~/dev/my-tests` +Go to the [C++ CylinderExample][cpp-cylinder-example] and download the tarball, extract it in to `~/dev/my-tests` -In the same folder, `~/dev/my-tests`, create a file called `CylinderExample.py` and mark it executable. Go to the python version of [CylinderExample](https://kitware.github.io/vtk-examples/site/Python/GeometricObjects/CylinderExample/) and copy it into your `CylinderExample.py` and save it. +In the same folder, `~/dev/my-tests`, create a file called `CylinderExample.py` and mark it executable. Go to [Python CylinderExample][python-cylinder-example] and copy it into your `CylinderExample.py` and save it. Now test using `vtkpython`, `python3` and then build and test the C++ version: ``` bash cd ~/dev/my-tests # Set your environment. -export VTK_DIR=$HOME/Kitware/vtk/build +export VTK_DIR=$HOME/dev/vtk/build export PYTHONPATH=~/dev/vtk/build/lib/python3.9/site-packages:PYTHONPATH alias vtkpython=~/dev/vtk/build/bin/vtkpython # Test vtkpython. @@ -100,3 +124,9 @@ Note: ``` as a cmake option. + +[cmake-download]: https://cmake.org/download/ +[cpp-cylinder-example]: https://kitware.github.io/vtk-examples/site/Cxx/GeometricObjects/CylinderExample/ +[ninja]: https://ninja-build.org/ +[python-cylinder-example]: https://kitware.github.io/vtk-examples/site/Python/GeometricObjects/CylinderExample/ +[vtk-download]: https://vtk.org/download/ -- GitLab From 6d7da7359b24bf0437294cf49e5e971ec649201b Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Thu, 21 Apr 2022 19:58:53 -0600 Subject: [PATCH 0014/1015] Add version suffix to the hierarchy destination For example, /lib/vtk-9.1/hierarchy/VTK, so that different versions of VTK can be installed within the same prefix. --- CMakeLists.txt | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/CMakeLists.txt b/CMakeLists.txt index ecf01d0186e0..100fd88dbb41 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -361,6 +361,12 @@ if (NOT DEFINED vtk_cmake_destination) endif () install(TARGETS vtkbuild EXPORT "${vtk_install_export}") +if (NOT DEFINED vtk_hierarchy_destination_args) + set(vtk_hierarchy_destination_args + HIERARCHY_DESTINATION + "${CMAKE_INSTALL_LIBDIR}/vtk${vtk_version_suffix}/hierarchy/VTK") +endif () + set(VTK_CUSTOM_LIBRARY_SUFFIX "" CACHE STRING "Custom library file name suffix (defaults to the version number)") mark_as_advanced(VTK_CUSTOM_LIBRARY_SUFFIX) -- GitLab From 1eed928079635ec51317b1e328cb603b371c7468 Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Tue, 19 Apr 2022 11:12:48 -0400 Subject: [PATCH 0015/1015] vtkCellCenters becomes ghost aware. `vtkCellCenters` now respects ghost cells by creating a ghost point array in the output. `DUPLICATECELL` becomes `DUPLICATEPOINT`, `HIDDENCELL` and `REFINEDCELL` become `HIDDENPOINT. --- Filters/Core/Testing/Cxx/TestCellCenters.cxx | 40 ++++++++- Filters/Core/vtkCellCenters.cxx | 90 ++++++++++++++++++++ 2 files changed, 129 insertions(+), 1 deletion(-) diff --git a/Filters/Core/Testing/Cxx/TestCellCenters.cxx b/Filters/Core/Testing/Cxx/TestCellCenters.cxx index 4ac7ecf4851b..d1a0756812e9 100644 --- a/Filters/Core/Testing/Cxx/TestCellCenters.cxx +++ b/Filters/Core/Testing/Cxx/TestCellCenters.cxx @@ -13,6 +13,10 @@ =========================================================================*/ +#include "vtkCellData.h" +#include "vtkDataSetAttributes.h" +#include "vtkPointData.h" +#include "vtkUnsignedCharArray.h" #include #include #include @@ -121,28 +125,46 @@ int TestCellCenters(int, char*[]) points->InsertNextPoint(3, 2, 1); points->InsertNextPoint(1, 3, 1); + vtkNew ghostCells; + ghostCells->SetName(vtkDataSetAttributes::GhostArrayName()); + vtkNew ugrid; ugrid->Allocate(20); ugrid->SetPoints(points); ugrid->InsertNextCell( emptyCell->GetCellType(), emptyCell->GetNumberOfPoints(), emptyCell->GetPointIds()->begin()); + ghostCells->InsertNextValue(0); ugrid->InsertNextCell( emptyCell->GetCellType(), emptyCell->GetNumberOfPoints(), emptyCell->GetPointIds()->begin()); + ghostCells->InsertNextValue(0); ugrid->InsertNextCell( tetra->GetCellType(), tetra->GetNumberOfPoints(), tetra->GetPointIds()->begin()); + ghostCells->InsertNextValue(0); ugrid->InsertNextCell( emptyCell->GetCellType(), emptyCell->GetNumberOfPoints(), emptyCell->GetPointIds()->begin()); + ghostCells->InsertNextValue(0); ugrid->InsertNextCell( pyramid->GetCellType(), pyramid->GetNumberOfPoints(), pyramid->GetPointIds()->begin()); + ghostCells->InsertNextValue(0); ugrid->InsertNextCell( emptyCell->GetCellType(), emptyCell->GetNumberOfPoints(), emptyCell->GetPointIds()->begin()); + ghostCells->InsertNextValue(0); + ugrid->InsertNextCell( + pyramid->GetCellType(), pyramid->GetNumberOfPoints(), pyramid->GetPointIds()->begin()); + ghostCells->InsertNextValue( + vtkDataSetAttributes::DUPLICATECELL | vtkDataSetAttributes::REFINEDCELL); + ugrid->InsertNextCell( + pyramid->GetCellType(), pyramid->GetNumberOfPoints(), pyramid->GetPointIds()->begin()); + ghostCells->InsertNextValue(vtkDataSetAttributes::HIDDENCELL); + + ugrid->GetCellData()->AddArray(ghostCells); cellCenters->SetInputData(ugrid); cellCenters->Update(); vtkPointSet* pointSet = cellCenters->GetOutput(); - if (pointSet->GetNumberOfPoints() != 2) + if (pointSet->GetNumberOfPoints() != 4) { std::cerr << "Empty cells were not ignored in the output" << std::endl; return EXIT_FAILURE; @@ -160,5 +182,21 @@ int TestCellCenters(int, char*[]) } } + vtkUnsignedCharArray* outputGhostPoints = pointSet->GetPointData()->GetGhostArray(); + if (!outputGhostPoints) + { + std::cerr << "There should be a ghost point array in the output" << std::endl; + return EXIT_FAILURE; + } + + if (outputGhostPoints->GetValue(0) || outputGhostPoints->GetValue(1) || + outputGhostPoints->GetValue(2) != + (vtkDataSetAttributes::DUPLICATEPOINT | vtkDataSetAttributes::HIDDENPOINT) || + outputGhostPoints->GetValue(3) != vtkDataSetAttributes::HIDDENPOINT) + { + std::cerr << "Ghost point tagging wrong in the output" << std::endl; + return EXIT_FAILURE; + } + return EXIT_SUCCESS; } diff --git a/Filters/Core/vtkCellCenters.cxx b/Filters/Core/vtkCellCenters.cxx index 722940e46854..ebe9c137e86f 100644 --- a/Filters/Core/vtkCellCenters.cxx +++ b/Filters/Core/vtkCellCenters.cxx @@ -17,12 +17,15 @@ #include "vtkCell.h" #include "vtkCellArray.h" #include "vtkCellData.h" +#include "vtkDataArrayRange.h" #include "vtkDataSet.h" +#include "vtkDataSetAttributes.h" #include "vtkDoubleArray.h" #include "vtkGenericCell.h" #include "vtkIdTypeArray.h" #include "vtkInformation.h" #include "vtkInformationVector.h" +#include "vtkLogger.h" #include "vtkNew.h" #include "vtkObjectFactory.h" #include "vtkPointData.h" @@ -30,6 +33,9 @@ #include "vtkPolyData.h" #include "vtkSMPThreadLocalObject.h" #include "vtkSMPTools.h" +#include "vtkUnsignedCharArray.h" + +#include vtkStandardNewMacro(vtkCellCenters); @@ -88,6 +94,74 @@ public: } }; +//============================================================================== +struct InputGhostCellFinder +{ + InputGhostCellFinder(vtkUnsignedCharArray* ghostCells, vtkIdList* cellIdList) + : GhostCells(ghostCells) + , CellIdList(cellIdList) + , HasInputGhostCells(false) + { + } + + void operator()(vtkIdType startId, vtkIdType endId) + { + auto ghosts = vtk::DataArrayValueRange<1>(this->GhostCells); + for (vtkIdType id = startId; id < endId; ++id) + { + if (this->HasInputGhostCells) + { + return; + } + if (ghosts[this->CellIdList->GetId(id)] & + (vtkDataSetAttributes::DUPLICATECELL | vtkDataSetAttributes::HIDDENCELL | + vtkDataSetAttributes::REFINEDCELL)) + { + this->HasInputGhostCells = true; + } + } + } + + vtkUnsignedCharArray* GhostCells; + vtkIdList* CellIdList; + std::atomic HasInputGhostCells; +}; + +//============================================================================== +struct GhostCellsToGhostPointsConverter +{ + GhostCellsToGhostPointsConverter( + vtkUnsignedCharArray* ghostCells, vtkUnsignedCharArray* ghostPoints, vtkIdList* cellIdList) + : GhostCells(ghostCells) + , GhostPoints(ghostPoints) + , CellIdList(cellIdList) + { + } + + void operator()(vtkIdType startId, vtkIdType endId) + { + auto ghostPoints = vtk::DataArrayValueRange<1>(this->GhostPoints); + auto ghostCells = vtk::DataArrayValueRange<1>(this->GhostCells); + for (vtkIdType id = startId; id < endId; ++id) + { + unsigned char ghost = ghostCells[this->CellIdList->GetId(id)]; + ghostPoints[id] = 0; + if (ghost & vtkDataSetAttributes::DUPLICATECELL) + { + ghostPoints[id] |= vtkDataSetAttributes::DUPLICATEPOINT; + } + if (ghost & (vtkDataSetAttributes::HIDDENCELL | vtkDataSetAttributes::REFINEDCELL)) + { + ghostPoints[id] |= vtkDataSetAttributes::HIDDENPOINT; + } + } + } + + vtkUnsignedCharArray* GhostCells; + vtkUnsignedCharArray* GhostPoints; + vtkIdList* CellIdList; +}; + } // end anonymous namespace //------------------------------------------------------------------------------ @@ -192,6 +266,22 @@ int vtkCellCenters::RequestData(vtkInformation* vtkNotUsed(request), } } + if (vtkUnsignedCharArray* inputGhostCells = input->GetCellData()->GetGhostArray()) + { + ::InputGhostCellFinder finder(inputGhostCells, cellIdList); + vtkSMPTools::For(0, numPoints, finder); + if (finder.HasInputGhostCells) + { + vtkNew ghostPoints; + ghostPoints->SetNumberOfValues(numPoints); + ghostPoints->SetName(vtkDataSetAttributes::GhostArrayName()); + + ::GhostCellsToGhostPointsConverter worker(inputGhostCells, ghostPoints, cellIdList); + vtkSMPTools::For(0, numPoints, worker); + outPD->AddArray(ghostPoints); + } + } + if (this->VertexCells) { vtkNew iArray; -- GitLab From 85a52788e6714436e77f1a30d0cda4315ee3aedb Mon Sep 17 00:00:00 2001 From: Utkarsh Ayachit Date: Fri, 22 Apr 2022 10:10:13 -0400 Subject: [PATCH 0016/1015] vtkDataArraySelection: cleanup docs --- Common/Core/vtkDataArraySelection.h | 24 +++++++++++++++++------- 1 file changed, 17 insertions(+), 7 deletions(-) diff --git a/Common/Core/vtkDataArraySelection.h b/Common/Core/vtkDataArraySelection.h index 7d4a0a9704b4..da14e00a405a 100644 --- a/Common/Core/vtkDataArraySelection.h +++ b/Common/Core/vtkDataArraySelection.h @@ -13,14 +13,24 @@ =========================================================================*/ /** - * @class vtkDataArraySelection - * @brief Store on/off settings for data arrays for a vtkSource. + * @class vtkDataArraySelection + * @brief Store on/off settings for data arrays, etc. * - * vtkDataArraySelection can be used by vtkSource subclasses to store - * on/off settings for whether each vtkDataArray in its input should - * be passed in the source's output. This is primarily intended to - * allow file readers to configure what data arrays are read from the - * file. + * vtkDataArraySelection is intended to be used by algorithms that want to + * expose a API that allow the user to enable/disable a collection of entities, + * such as arrays. Readers, for example, can use vtkDataArraySelection to let + * the user choose which array to read from the file. + * + * Originally intended for selecting data arrays (hence the name), this class + * can be used for letting users choose other items too, for example, + * vtkIOSSReader uses vtkDataArraySelection to let users choose + * which blocks to read. + * + * Unlike most other vtkObject subclasses, vtkDataArraySelection has public API + * that need not modify the MTime for the object. These M-Time non-modifying + * methods are typically intended for use within the algorithm or reader to + * populate the vtkDataArraySelection instance with available array names and + * their default values. */ #ifndef vtkDataArraySelection_h -- GitLab From 1fc77acb417c6b3941612a579e908a87bfe04e2b Mon Sep 17 00:00:00 2001 From: Andrew Maclean Date: Mon, 25 Apr 2022 10:56:21 +1000 Subject: [PATCH 0017/1015] Adding a table of contents --- Documentation/dev/build.md | 25 +++++++++++++++++++++- Documentation/dev/build_windows_vs.md | 23 ++++++++++++++++---- Documentation/dev/getting_started_linux.md | 2 +- 3 files changed, 44 insertions(+), 6 deletions(-) diff --git a/Documentation/dev/build.md b/Documentation/dev/build.md index 9890951e5fb2..12c9ebf43431 100644 --- a/Documentation/dev/build.md +++ b/Documentation/dev/build.md @@ -1,5 +1,28 @@ # Building VTK +## Table of Contents + +1. [Linux Getting Started](#linux-getting-started) +2. [Obtaining the source](#obtaining-the-source) +3. [Building](#building) + 1. [Prerequisites](#prerequisites) + 1. [Installing CMake](#installing-cmake) + 2. [Installing Qt](#installing-qt) + 2. [Optional Additions](#optional-additions) + 1. [Download And Install ffmpeg movie libraries](#download-and-install-ffmpeg-movie-libraries) + 2. [MPI](#mpi) + 3. [Python](#python) + 4. [OSMesa](#osmesa) +4. [Creating the Build Environment](#creating-the-build-environment) + 1. [Linux (Ubuntu/Debian)](#linux-(ubuntu/debian)) + 2. [Windows](#windows) +5. [Building](#building) + 1. [Missing dependencies](#missing-dependencies) + 2. [Build Settings](#build-settings) + 1. [Mobile devices](#mobile-devices) + 2. [Python wheels](#python-wheels) +6. [Building documentation](#building-documentation) + This page describes how to build and install VTK. It covers building for development, on both Unix-type systems (Linux, HP-UX, Solaris, macOS), and Windows. Note that Unix-like environments such as Cygwin and MinGW are not @@ -79,7 +102,7 @@ compiler version used to build Qt. ### Optional Additions -#### Download And Install ffmpeg (`.avi`) movie libraries +#### Download And Install ffmpeg movie libraries When the ability to write `.avi` files is desired, and writing these files is not supported by the OS, VTK can use the ffmpeg library. This is generally diff --git a/Documentation/dev/build_windows_vs.md b/Documentation/dev/build_windows_vs.md index 194ed73169d4..cfa9ee835c25 100644 --- a/Documentation/dev/build_windows_vs.md +++ b/Documentation/dev/build_windows_vs.md @@ -1,5 +1,21 @@ # Building VTK using Visual Studio on Windows +## Table of Contents + +1. [Introduction](#introduction) +2. [Prerequisites](#prerequisites) + 1. [Get CMake](#get-cmake) + 2. [Get Visual Studio](#get-visual-studio) + 3. [Get VTK Source-code](#get-vtk-source-code) +3. [BUILD SOLUTION](#build-solution) + 1. [Prepare folder structure](#prepare-folder-structure) + 2. [Run CMake](#run-cmake) + 3. [Build](#build) +4. [INSTALL](#install) +5. [TEST WITH AN EXAMPLE](#test-with-an-example) +6. [Guide created using](#guide-created-using) + + ## Introduction This page describes how to build and install VTK using Visual Studio on Windows in recipe-style fashion. It is also possible to build VTK on Windows without using Visual Studio directly, this is covered in [Building VTK](<./build.md>). @@ -17,7 +33,7 @@ For this guide you will need to following: If you have these then you can skip the rest of this section and proceed to BUILD SOLUTION. -### 1. Get CMake +### Get CMake CMake is a tool that makes cross-platform building simple. On several systems it will probably be already installed. If it is not, please use the following instructions to install it. There are several precompiled binaries available at the [CMake download page](https://cmake.org/download/). Download version 3.10 or later. @@ -25,20 +41,19 @@ Add CMake to your PATH environment variable if you downloaded an archive and not This guide was tested using cmake 3.13.4 64bit installed by dowloading the .msi installer. [cmake-3.13.4-win64-x64.msi] -### 2. Get Visual Studio +### Get Visual Studio This guide uses Visual Studio / C++ as IDE and compiler. Visual studio can be installed from [Download](https://visualstudio.microsoft.com/vs/community/). This howto uses the free community edition. During installation select the "desktop development with C++" workload. -### 3. Get VTK Source-code +### Get VTK Source-code Download VTK source for the version you want from [https://vtk.org/download/](https://vtk.org/download/) (zip or tar.gz (Do NOT download the exe - this is not the VTK library.) ) You will probably want the latest one (highest version number) unless you have a specific reason to use an older one. Alternatively the source-code can be obtained from the repository as well. This is recommended only if you intent to make changes and contribute to VTK. - ## BUILD SOLUTION Use CMake to create a solution that visual studio can open. diff --git a/Documentation/dev/getting_started_linux.md b/Documentation/dev/getting_started_linux.md index d53cfa788b13..ec5df7c21e23 100644 --- a/Documentation/dev/getting_started_linux.md +++ b/Documentation/dev/getting_started_linux.md @@ -1,6 +1,6 @@ # Getting Started Using Linux -## Contents +## Table of Contents 1. [Introduction](#introduction) 2. [Tools Needed](#tools-needed) -- GitLab From 1d1e83748444a29f0275b133d0ba9a8fe01a8f87 Mon Sep 17 00:00:00 2001 From: Utkarsh Ayachit Date: Mon, 25 Apr 2022 12:03:16 -0400 Subject: [PATCH 0018/1015] vtkIOSSReader: add API to expose block ids vtkIOSSReader now has API that users can use to determine block ids based on block names. This is useful in case blocks have special names which then ends up hiding their block ids. Needed to address paraview/paraview#16883. --- IO/IOSS/Testing/Cxx/TestIOSSExodus.cxx | 12 ++++ IO/IOSS/vtkIOSSReader.cxx | 46 +++++++++++++ IO/IOSS/vtkIOSSReader.h | 92 ++++++++++++++++++++++++++ 3 files changed, 150 insertions(+) diff --git a/IO/IOSS/Testing/Cxx/TestIOSSExodus.cxx b/IO/IOSS/Testing/Cxx/TestIOSSExodus.cxx index 9f30725001c7..5d51d6582639 100644 --- a/IO/IOSS/Testing/Cxx/TestIOSSExodus.cxx +++ b/IO/IOSS/Testing/Cxx/TestIOSSExodus.cxx @@ -17,6 +17,7 @@ #include #include #include +#include #include #include #include @@ -59,6 +60,17 @@ int TestIOSSExodus(int argc, char* argv[]) ren->ResetCamera(); renWin->Render(); + // let verify id maps are built properly + auto& elementMap = reader->GetElementBlockIdMap(); + auto& nodeSetMap = reader->GetNodeSetIdMap(); + auto& sideSetMap = reader->GetSideSetIdMap(); + if (elementMap.at("block_1") != 1 || elementMap.at("block_2") != 2 || + nodeSetMap.at("nodelist_1") != 1 || nodeSetMap.at("nodelist_100") != 100 || + sideSetMap.at("surface_4") != 4) + { + vtkLogF(ERROR, "id map mismatch!"); + } + int retVal = vtkRegressionTestImage(renWin); if (retVal == vtkRegressionTester::DO_INTERACTOR) { diff --git a/IO/IOSS/vtkIOSSReader.cxx b/IO/IOSS/vtkIOSSReader.cxx index 1ad327be5df5..7fb8f23db5ba 100644 --- a/IO/IOSS/vtkIOSSReader.cxx +++ b/IO/IOSS/vtkIOSSReader.cxx @@ -1137,9 +1137,14 @@ bool vtkIOSSReader::vtkInternals::UpdateEntityAndFieldSelections(vtkIOSSReader* for (int cc = ENTITY_START; cc < ENTITY_END; ++cc) { auto entitySelection = self->GetEntitySelection(cc); + auto& entityIdMap = self->EntityIdMap[cc]; for (auto& name : entity_names[cc]) { entitySelection->AddArray(name.second.c_str(), vtkIOSSReader::GetEntityTypeIsBlock(cc)); + if (name.first != 0) + { + entityIdMap[name.second] = name.first; + } } auto fieldSelection = self->GetFieldSelection(cc); @@ -3223,6 +3228,47 @@ vtkDataArraySelection* vtkIOSSReader::GetFieldSelection(int type) return this->EntityFieldSelection[type]; } +//---------------------------------------------------------------------------- +const std::map& vtkIOSSReader::GetEntityIdMap(int type) const +{ + if (type < 0 || type >= NUMBER_OF_ENTITY_TYPES) + { + vtkErrorMacro("Invalid type '" << type + << "'. Supported values are " + "vtkIOSSReader::NODEBLOCK (0), ... vtkIOSSReader::SIDESET (" + << vtkIOSSReader::SIDESET << ")."); + return this->EntityIdMap[NUMBER_OF_ENTITY_TYPES]; + } + + return this->EntityIdMap[type]; +} + +//---------------------------------------------------------------------------- +vtkStringArray* vtkIOSSReader::GetEntityIdMapAsString(int type) const +{ + if (type < 0 || type >= NUMBER_OF_ENTITY_TYPES) + { + vtkErrorMacro("Invalid type '" << type + << "'. Supported values are " + "vtkIOSSReader::NODEBLOCK (0), ... vtkIOSSReader::SIDESET (" + << vtkIOSSReader::SIDESET << ")."); + return this->EntityIdMapStrings[NUMBER_OF_ENTITY_TYPES]; + } + + const auto& map = this->GetEntityIdMap(type); + auto& strings = this->EntityIdMapStrings[type]; + strings->SetNumberOfTuples(map.size() * 2); + + vtkIdType index = 0; + for (const auto& pair : map) + { + strings->SetValue(index++, pair.first); + strings->SetValue(index++, std::to_string(pair.second)); + } + + return strings; +} + //---------------------------------------------------------------------------- vtkMTimeType vtkIOSSReader::GetMTime() { diff --git a/IO/IOSS/vtkIOSSReader.h b/IO/IOSS/vtkIOSSReader.h index e3e68f0f97b5..67de550a70d4 100644 --- a/IO/IOSS/vtkIOSSReader.h +++ b/IO/IOSS/vtkIOSSReader.h @@ -175,9 +175,12 @@ #include "vtkNew.h" // for vtkNew #include "vtkReaderAlgorithm.h" +#include // for std::map + class vtkDataArraySelection; class vtkDataAssembly; class vtkMultiProcessController; +class vtkStringArray; class VTKIOIOSS_EXPORT vtkIOSSReader : public vtkReaderAlgorithm { @@ -419,6 +422,92 @@ public: this->RemoveAllFieldSelections(); } + ///@{ + /** + * In IOSS entity blocks/sets may have unique ids. These API provide access to + * the map between a entity name and its id, if any. Note, these are provided + * for information purposes only. + */ + const std::map& GetEntityIdMap(int type) const; + const std::map& GetNodeBlockIdMap() const + { + return this->GetEntityIdMap(NODEBLOCK); + } + const std::map& GetEdgeBlockIdMap() const + { + return this->GetEntityIdMap(EDGEBLOCK); + } + const std::map& GetFaceBlockIdMap() const + { + return this->GetEntityIdMap(FACEBLOCK); + } + const std::map& GetElementBlockIdMap() const + { + return this->GetEntityIdMap(ELEMENTBLOCK); + } + const std::map& GetStructuredBlockIdMap() const + { + return this->GetEntityIdMap(STRUCTUREDBLOCK); + } + const std::map& GetNodeSetIdMap() const + { + return this->GetEntityIdMap(NODESET); + } + const std::map& GetEdgeSetIdMap() const + { + return this->GetEntityIdMap(EDGESET); + } + const std::map& GetFaceSetIdMap() const + { + return this->GetEntityIdMap(FACESET); + } + const std::map& GetElementSetIdMap() const + { + return this->GetEntityIdMap(ELEMENTSET); + } + const std::map& GetSideSetIdMap() const + { + return this->GetEntityIdMap(SIDESET); + } + ///@} + + ///@{ + /** + * This API is not really meant for public use and may change without notices. + * It is simply provided to make it easy to wrap the API in client-server + * wrappings for ParaView. + */ + vtkStringArray* GetEntityIdMapAsString(int type) const; + vtkStringArray* GetNodeBlockIdMapAsString() const + { + return this->GetEntityIdMapAsString(NODEBLOCK); + } + vtkStringArray* GetEdgeBlockIdMapAsString() const + { + return this->GetEntityIdMapAsString(EDGEBLOCK); + } + vtkStringArray* GetFaceBlockIdMapAsString() const + { + return this->GetEntityIdMapAsString(FACEBLOCK); + } + vtkStringArray* GetElementBlockIdMapAsString() const + { + return this->GetEntityIdMapAsString(ELEMENTBLOCK); + } + vtkStringArray* GetStructuredBlockIdMapAsString() const + { + return this->GetEntityIdMapAsString(STRUCTUREDBLOCK); + } + vtkStringArray* GetNodeSetIdMapAsString() const { return this->GetEntityIdMapAsString(NODESET); } + vtkStringArray* GetEdgeSetIdMapAsString() const { return this->GetEntityIdMapAsString(EDGESET); } + vtkStringArray* GetFaceSetIdMapAsString() const { return this->GetEntityIdMapAsString(FACESET); } + vtkStringArray* GetElementSetIdMapAsString() const + { + return this->GetEntityIdMapAsString(ELEMENTSET); + } + vtkStringArray* GetSideSetIdMapAsString() const { return this->GetEntityIdMapAsString(SIDESET); } + ///@} + ///@{ /** * Assemblies provide yet another way of selection blocks/sets to load, if @@ -498,6 +587,9 @@ private: void operator=(const vtkIOSSReader&) = delete; vtkNew EntitySelection[NUMBER_OF_ENTITY_TYPES]; vtkNew EntityFieldSelection[NUMBER_OF_ENTITY_TYPES]; + std::map EntityIdMap[NUMBER_OF_ENTITY_TYPES + 1]; + vtkNew EntityIdMapStrings[NUMBER_OF_ENTITY_TYPES + 1]; + vtkMultiProcessController* Controller; bool GenerateFileId; bool ScanForRelatedFiles; -- GitLab From 60f0a96579deb9333ecccaf22e596919a78fc591 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Tue, 26 Apr 2022 00:01:38 -0400 Subject: [PATCH 0019/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 4937ef711c6f..3b790afebbce 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220425) +set(VTK_BUILD_VERSION 20220426) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From e0f73c3a6d5369ac8a524ab84454d009c1c8b9be Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Tue, 26 Apr 2022 09:42:57 +0200 Subject: [PATCH 0020/1015] vtkQuadraticQuad: fix bug in `InterpolateAttributes`. vtkQuadraticQuad::InterpolateAttributes was not copy cell data for all linear cells it creates. This was causing Clip/Contour to copy bad values to the output. Fixed that. --- Common/DataModel/vtkQuadraticQuad.cxx | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/Common/DataModel/vtkQuadraticQuad.cxx b/Common/DataModel/vtkQuadraticQuad.cxx index d28c5e53946d..22caa561f5e7 100644 --- a/Common/DataModel/vtkQuadraticQuad.cxx +++ b/Common/DataModel/vtkQuadraticQuad.cxx @@ -236,8 +236,12 @@ void vtkQuadraticQuad::InterpolateAttributes( this->PointData->CopyData(inPd, this->PointIds->GetId(i), i); this->CellScalars->SetValue(i, cellScalars->GetTuple1(i)); } - // copy the cell data over to the linear cell - this->CellData->CopyData(inCd, cellId, 0); + + // copy the cell data over to the linear cells + for (i = 0; i < 4; i++) + { + this->CellData->CopyData(inCd, cellId, i); + } // Interpolate new values double p[3]; -- GitLab From db74bf006de5b42f318e5928f3c6a75ec77b556b Mon Sep 17 00:00:00 2001 From: Sean McBride Date: Sat, 16 Apr 2022 13:05:10 -0400 Subject: [PATCH 0021/1015] Added missing include file for uint64_t --- IO/Image/vtkSEPReader.cxx | 1 + 1 file changed, 1 insertion(+) diff --git a/IO/Image/vtkSEPReader.cxx b/IO/Image/vtkSEPReader.cxx index 0078b3cdd715..591571e4c54a 100644 --- a/IO/Image/vtkSEPReader.cxx +++ b/IO/Image/vtkSEPReader.cxx @@ -34,6 +34,7 @@ #include #include +#include namespace details { -- GitLab From 7d0e2b5259065ba08bd21711e885848b740ee84b Mon Sep 17 00:00:00 2001 From: Sean McBride Date: Fri, 15 Apr 2022 13:19:01 -0400 Subject: [PATCH 0022/1015] Fixed signed overflow found by UBSan If acc is signed, the loop will eventually multiply so much that acc overflows. This fixes failing test VTK::IOImageCxx-TestSEPReader --- IO/Image/vtkSEPReader.cxx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/IO/Image/vtkSEPReader.cxx b/IO/Image/vtkSEPReader.cxx index 591571e4c54a..335e9d8083a4 100644 --- a/IO/Image/vtkSEPReader.cxx +++ b/IO/Image/vtkSEPReader.cxx @@ -451,7 +451,7 @@ bool vtkSEPReader::ReadData(vtkImageData* imageData, int updateExtents[6]) new char[nbPoints * details::DataFormatSize[static_cast(this->DataFormat)]]; int DimensionsOffset[details::SEP_READER_MAX_DIMENSION]; - vtkIdType acc = 1; + uint64_t acc = 1; for (int t = 0; t < details::SEP_READER_MAX_DIMENSION; t++) { DimensionsOffset[t] = acc; -- GitLab From 054c4954783e1b1b905e50510712faa23767e21d Mon Sep 17 00:00:00 2001 From: Lucas Givord Date: Tue, 26 Apr 2022 12:16:26 +0200 Subject: [PATCH 0023/1015] Fix crash when we use renderLineAsTube without light in scene --- Rendering/OpenGL2/vtkOpenGLPolyDataMapper.cxx | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/Rendering/OpenGL2/vtkOpenGLPolyDataMapper.cxx b/Rendering/OpenGL2/vtkOpenGLPolyDataMapper.cxx index a88396c31d1f..650fc35ad71e 100644 --- a/Rendering/OpenGL2/vtkOpenGLPolyDataMapper.cxx +++ b/Rendering/OpenGL2/vtkOpenGLPolyDataMapper.cxx @@ -616,7 +616,9 @@ void vtkOpenGLPolyDataMapper::ReplaceShaderEdges( "float emix = clamp(0.5 + 0.5*lineWidth - min( min( edist[0], edist[1]), edist[2]), 0.0, " "1.0);\n"; - if (actor->GetProperty()->GetRenderLinesAsTubes()) + bool canRenderLinesAsTube = + actor->GetProperty()->GetRenderLinesAsTubes() && ren->GetLights()->GetNumberOfItems() > 0; + if (canRenderLinesAsTube) { fsimpl += " diffuseColor = mix(diffuseColor, diffuseIntensity*edgeColor, emix);\n" " ambientColor = mix(ambientColor, ambientIntensity*edgeColor, emix);\n" @@ -634,7 +636,7 @@ void vtkOpenGLPolyDataMapper::ReplaceShaderEdges( // even more fake tubes, for surface with edges this implementation // just adjusts the normal calculation but not the zbuffer - if (actor->GetProperty()->GetRenderLinesAsTubes()) + if (canRenderLinesAsTube) { vtkShaderProgram::Substitute(FSSource, "//VTK::Normal::Impl", "//VTK::Normal::Impl\n" -- GitLab From 57625ec769f0125e4e0c7aec3c215b79eac55922 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 13 Apr 2022 09:38:19 -0400 Subject: [PATCH 0024/1015] vtkStreamTracer: Use c++ math functions --- Filters/FlowPaths/vtkStreamTracer.cxx | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/Filters/FlowPaths/vtkStreamTracer.cxx b/Filters/FlowPaths/vtkStreamTracer.cxx index 9fc7d1f33f8c..eb85b60885fc 100644 --- a/Filters/FlowPaths/vtkStreamTracer.cxx +++ b/Filters/FlowPaths/vtkStreamTracer.cxx @@ -1085,7 +1085,7 @@ struct TracerIntegrator inVectors = input->GetAttributesAsFieldData(vecType)->GetArray(vecName); // Convert intervals to arc-length unit input->GetCell(func->GetLastCellId(), cell); - cellLength = sqrt(static_cast(cell->GetLength2())); + cellLength = std::sqrt(static_cast(cell->GetLength2())); speed = vtkMath::Norm(velocity); // Never call conversion methods if speed == 0 if (speed != 0.0) @@ -1178,7 +1178,7 @@ struct TracerIntegrator // If, with the next step, propagation will be larger than // max, reduce it so that it is (approximately) equal to max. - aStep.Interval = fabs(stepSize.Interval); + aStep.Interval = std::abs(stepSize.Interval); if ((propagation + aStep.Interval) > this->MaximumPropagation) { @@ -1245,7 +1245,7 @@ struct TracerIntegrator integrationTime += stepTaken / speed; // Calculate propagation (using the same units as MaximumPropagation - propagation += fabs(stepSize.Interval); + propagation += std::abs(stepSize.Interval); // Make sure we use the dataset found by the vtkAbstractInterpolatedVelocityField input = func->GetLastDataSet(); @@ -1254,7 +1254,7 @@ struct TracerIntegrator // Calculate cell length and speed to be used in unit conversions input->GetCell(func->GetLastCellId(), cell); - cellLength = sqrt(static_cast(cell->GetLength2())); + cellLength = std::sqrt(static_cast(cell->GetLength2())); speed = speed2; // Check if conversion to float will produce a point in same place @@ -1328,13 +1328,13 @@ struct TracerIntegrator // size (unless it is specified in arc-length unit) if (integrator->IsAdaptive()) { - if (fabs(stepSize.Interval) < fabs(minStep)) + if (std::abs(stepSize.Interval) < std::abs(minStep)) { - stepSize.Interval = fabs(minStep) * stepSize.Interval / fabs(stepSize.Interval); + stepSize.Interval = std::abs(minStep) * stepSize.Interval / std::abs(stepSize.Interval); } - else if (fabs(stepSize.Interval) > fabs(maxStep)) + else if (std::abs(stepSize.Interval) > std::abs(maxStep)) { - stepSize.Interval = fabs(maxStep) * stepSize.Interval / fabs(stepSize.Interval); + stepSize.Interval = std::abs(maxStep) * stepSize.Interval / std::abs(stepSize.Interval); } } else @@ -1709,8 +1709,8 @@ void vtkStreamTracer::GenerateNormals(vtkPolyData* output, double* firstNormal, vtkMath::Normalize(local2); // Rotate the normal with theta rotation->GetTuple(ptId, &theta); - costheta = cos(theta); - sintheta = sin(theta); + costheta = std::cos(theta); + sintheta = std::sin(theta); for (auto j = 0; j < 3; j++) { normal[j] = length * (costheta * local1[j] + sintheta * local2[j]); -- GitLab From b60f33ce263e8f05063275bb1de505dcd526f347 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 13 Apr 2022 12:04:19 -0400 Subject: [PATCH 0025/1015] vtkStreamTracer: Utilize SafeDownCast results --- Filters/FlowPaths/vtkStreamTracer.cxx | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Filters/FlowPaths/vtkStreamTracer.cxx b/Filters/FlowPaths/vtkStreamTracer.cxx index eb85b60885fc..6ae06763822a 100644 --- a/Filters/FlowPaths/vtkStreamTracer.cxx +++ b/Filters/FlowPaths/vtkStreamTracer.cxx @@ -616,16 +616,16 @@ int vtkStreamTracer::CheckInputs(vtkAbstractInterpolatedVelocityField*& func, in } // Tweak special cases. - if (vtkAMRInterpolatedVelocityField::SafeDownCast(func)) + if (auto amrVelocityField = vtkAMRInterpolatedVelocityField::SafeDownCast(func)) { assert(amrData); - vtkAMRInterpolatedVelocityField::SafeDownCast(func)->SetAMRData(amrData); + amrVelocityField->SetAMRData(amrData); if (maxCellSize) { *maxCellSize = 8; } } - else if (vtkCompositeInterpolatedVelocityField::SafeDownCast(func)) + else if (auto compVelocityField = vtkCompositeInterpolatedVelocityField::SafeDownCast(func)) { iter->GoToFirstItem(); while (!iter->IsDoneWithTraversal()) @@ -638,7 +638,7 @@ int vtkStreamTracer::CheckInputs(vtkAbstractInterpolatedVelocityField*& func, in { *maxCellSize = cellSize; } - vtkCompositeInterpolatedVelocityField::SafeDownCast(func)->AddDataSet(inp); + compVelocityField->AddDataSet(inp); } iter->GoToNextItem(); } -- GitLab From 7820ceb1909ca6584e18fe7320c48a4603c85181 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 13 Apr 2022 13:53:48 -0400 Subject: [PATCH 0026/1015] vtkPStreamTracer: Enable multithreading with only 1 process --- Filters/ParallelFlowPaths/vtkPStreamTracer.cxx | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/Filters/ParallelFlowPaths/vtkPStreamTracer.cxx b/Filters/ParallelFlowPaths/vtkPStreamTracer.cxx index 358c0267f94c..9345b3973086 100644 --- a/Filters/ParallelFlowPaths/vtkPStreamTracer.cxx +++ b/Filters/ParallelFlowPaths/vtkPStreamTracer.cxx @@ -1461,8 +1461,12 @@ int vtkPStreamTracer::RequestData( if (!vtkMPIController::SafeDownCast(this->Controller) || this->Controller->GetNumberOfProcesses() == 1) { + this->SerialExecution = false; + this->ForceSerialExecution = false; this->GenerateNormalsInIntegrate = true; int result = vtkStreamTracer::RequestData(request, inputVector, outputVector); + this->SerialExecution = true; + this->ForceSerialExecution = true; this->GenerateNormalsInIntegrate = false; return result; } -- GitLab From 8af731813875babf8214acff35fb5b45aa1330b8 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 13 Apr 2022 14:22:49 -0400 Subject: [PATCH 0027/1015] vtkDataSet: Add GetLength2 function --- Common/DataModel/vtkDataSet.cxx | 10 ++++++++-- Common/DataModel/vtkDataSet.h | 7 +++++++ 2 files changed, 15 insertions(+), 2 deletions(-) diff --git a/Common/DataModel/vtkDataSet.cxx b/Common/DataModel/vtkDataSet.cxx index 2ed21b5fab53..f973419b6e9a 100644 --- a/Common/DataModel/vtkDataSet.cxx +++ b/Common/DataModel/vtkDataSet.cxx @@ -249,6 +249,13 @@ void vtkDataSet::GetCenter(double center[3]) //------------------------------------------------------------------------------ // Return the length of the diagonal of the bounding box. double vtkDataSet::GetLength() +{ + return std::sqrt(this->GetLength2()); +} + +//------------------------------------------------------------------------------ +// Return the squared length of the diagonal of the bounding box. +double vtkDataSet::GetLength2() { if (this->GetNumberOfPoints() == 0) { @@ -264,8 +271,7 @@ double vtkDataSet::GetLength() diff = static_cast(this->Bounds[2 * i + 1]) - static_cast(this->Bounds[2 * i]); l += diff * diff; } - diff = sqrt(l); - return diff; + return l; } //------------------------------------------------------------------------------ diff --git a/Common/DataModel/vtkDataSet.h b/Common/DataModel/vtkDataSet.h index b9ecd2700431..a205e61fa627 100644 --- a/Common/DataModel/vtkDataSet.h +++ b/Common/DataModel/vtkDataSet.h @@ -319,6 +319,13 @@ public: */ double GetLength(); + /** + * Return the squared length of the diagonal of the bounding box. + * THIS METHOD IS THREAD SAFE IF FIRST CALLED FROM A SINGLE THREAD AND + * THE DATASET IS NOT MODIFIED + */ + double GetLength2(); + /** * Restore data object to initial state. * THIS METHOD IS NOT THREAD SAFE. -- GitLab From e6ce038572cc62ec83ba0e56af7cae8aca7893b4 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 13 Apr 2022 20:56:18 -0400 Subject: [PATCH 0028/1015] vtkIdList/vtkPolyData/vtkStructuredGrid: Remove Legacy functions These functions should have been deleted a long time ago. --- Common/Core/vtkIdList.h | 5 ----- Common/DataModel/vtkDataSet.cxx | 9 +++------ Common/DataModel/vtkPolyData.h | 10 ---------- Common/DataModel/vtkStructuredGrid.h | 8 -------- 4 files changed, 3 insertions(+), 29 deletions(-) diff --git a/Common/Core/vtkIdList.h b/Common/Core/vtkIdList.h index 8de8e37fd976..99bda48677fb 100644 --- a/Common/Core/vtkIdList.h +++ b/Common/Core/vtkIdList.h @@ -177,11 +177,6 @@ public: */ vtkIdType* Resize(const vtkIdType sz); - /** - * Intersect one id list with another. This method should become legacy. - */ - void IntersectWith(vtkIdList& otherIds) { this->IntersectWith(&otherIds); } - #ifndef __VTK_WRAP__ /** * This releases the ownership of the internal vtkIdType array and returns the diff --git a/Common/DataModel/vtkDataSet.cxx b/Common/DataModel/vtkDataSet.cxx index f973419b6e9a..1ff6a7059941 100644 --- a/Common/DataModel/vtkDataSet.cxx +++ b/Common/DataModel/vtkDataSet.cxx @@ -307,8 +307,7 @@ vtkCell* vtkDataSet::FindAndGetCell(double x[3], vtkCell* cell, vtkIdType cellId //------------------------------------------------------------------------------ void vtkDataSet::GetCellNeighbors(vtkIdType cellId, vtkIdList* ptIds, vtkIdList* cellIds) { - vtkIdType i, numPts; - vtkIdList* otherCells = vtkIdList::New(); + vtkNew otherCells; otherCells->Allocate(VTK_CELL_SIZE); // load list with candidate cells, remove current cell @@ -318,14 +317,12 @@ void vtkDataSet::GetCellNeighbors(vtkIdType cellId, vtkIdList* ptIds, vtkIdList* // now perform multiple intersections on list if (cellIds->GetNumberOfIds() > 0) { - for (numPts = ptIds->GetNumberOfIds(), i = 1; i < numPts; i++) + for (vtkIdType numPts = ptIds->GetNumberOfIds(), i = 1; i < numPts; i++) { this->GetPointCells(ptIds->GetId(i), otherCells); - cellIds->IntersectWith(*otherCells); + cellIds->IntersectWith(otherCells); } } - - otherCells->Delete(); } //------------------------------------------------------------------------------ diff --git a/Common/DataModel/vtkPolyData.h b/Common/DataModel/vtkPolyData.h index a953dfd63d8e..4bf379a56d81 100644 --- a/Common/DataModel/vtkPolyData.h +++ b/Common/DataModel/vtkPolyData.h @@ -711,16 +711,6 @@ protected: vtkTimeStamp CellsBoundsTime; private: - // Hide these from the user and the compiler. - - /** - * For legacy compatibility. Do not use. - */ - void GetCellNeighbors(vtkIdType cellId, vtkIdList& ptIds, vtkIdList& cellIds) - { - this->GetCellNeighbors(cellId, &ptIds, &cellIds); - } - void Cleanup(); private: diff --git a/Common/DataModel/vtkStructuredGrid.h b/Common/DataModel/vtkStructuredGrid.h index eb07401ab008..e6b787152a1a 100644 --- a/Common/DataModel/vtkStructuredGrid.h +++ b/Common/DataModel/vtkStructuredGrid.h @@ -260,14 +260,6 @@ protected: void ComputeScalarRange() override; private: - /** - * For legacy compatibility. Do not use. - */ - void GetCellNeighbors(vtkIdType cellId, vtkIdList& ptIds, vtkIdList& cellIds) - { - this->GetCellNeighbors(cellId, &ptIds, &cellIds); - } - // Internal method used by DeepCopy and ShallowCopy. void InternalStructuredGridCopy(vtkStructuredGrid* src); -- GitLab From 92b7fd2a322ed1395124c1cd7a97ccc240342cf3 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Fri, 15 Apr 2022 09:22:42 -0400 Subject: [PATCH 0029/1015] vtkMath: Improvements --- Common/Core/vtkMath.cxx | 14 +++++--------- 1 file changed, 5 insertions(+), 9 deletions(-) diff --git a/Common/Core/vtkMath.cxx b/Common/Core/vtkMath.cxx index e372c1c37816..47a2272a8984 100644 --- a/Common/Core/vtkMath.cxx +++ b/Common/Core/vtkMath.cxx @@ -2960,10 +2960,11 @@ vtkTypeBool vtkMath::BoundsIsWithinOtherBounds( } for (int i = 0; i < 6; i += 2) { - if (bounds1[i] + delta[i / 2] < bounds2[i] || bounds1[i] - delta[i / 2] > bounds2[i + 1] || bounds1[i + 1] + delta[i / 2] < bounds2[i] || bounds1[i + 1] - delta[i / 2] > bounds2[i + 1]) + { return 0; + } } return 1; } @@ -2976,14 +2977,9 @@ vtkTypeBool vtkMath::PointIsWithinBounds( { return 0; } - for (int i = 0; i < 3; ++i) - { - if (point[i] + delta[i] < bounds[2 * i] || point[i] - delta[i] > bounds[2 * i + 1]) - { - return 0; - } - } - return 1; + return /*i = 0*/ point[0] + delta[0] >= bounds[0] && point[0] - delta[0] <= bounds[1] && + /*i = 1*/ point[1] + delta[1] >= bounds[2] && point[1] - delta[1] <= bounds[3] && + /*i = 2*/ point[2] + delta[2] >= bounds[4] && point[2] - delta[2] <= bounds[5]; } //------------------------------------------------------------------------------ -- GitLab From f441db1c55ca957b8ab03e92c9d5982b77cb962b Mon Sep 17 00:00:00 2001 From: Utkarsh Ayachit Date: Tue, 26 Apr 2022 14:24:48 -0400 Subject: [PATCH 0030/1015] vtkRemoveUnusedPoints: minimize work vtkRemoveUnusedPoints now avoids creating a copy unnecessarily when all points are being used. If no points are unused, this filter's output is now simply a pass-through (with extra arrays if requested). --- Filters/Core/vtkRemoveUnusedPoints.cxx | 20 ++++++++++++++++++-- 1 file changed, 18 insertions(+), 2 deletions(-) diff --git a/Filters/Core/vtkRemoveUnusedPoints.cxx b/Filters/Core/vtkRemoveUnusedPoints.cxx index 60455f6f9119..1e583901f4a7 100644 --- a/Filters/Core/vtkRemoveUnusedPoints.cxx +++ b/Filters/Core/vtkRemoveUnusedPoints.cxx @@ -190,8 +190,7 @@ int vtkRemoveUnusedPoints::RequestData(vtkInformation* vtkNotUsed(request), if (oldid < 0 || oldid >= numPoints) { vtkErrorMacro("Invalid point id '" << oldid << "' in cell '" << cellId - << "'. " - "Data maybe corrupt or incorrect."); + << "'. Data maybe corrupt or incorrect."); output->Initialize(); return 0; } @@ -204,6 +203,23 @@ int vtkRemoveUnusedPoints::RequestData(vtkInformation* vtkNotUsed(request), } } + if (nextPtId == numPoints) + { + // if all point are used, then skip extracting points. + output->ShallowCopy(input); + if (this->GenerateOriginalPointIds) + { + // reset original ids to be 0..n + std::iota(originalIds->GetPointer(0), originalIds->GetPointer(0) + numPoints, 0); + vtkNew opids; + opids->SetName(this->OriginalPointIdsArrayName); + opids->SetArray( + originalIds->Release(), nextPtId, /*save=*/0, vtkIdTypeArray::VTK_DATA_ARRAY_DELETE); + output->GetPointData()->AddArray(opids); + } + return 1; + } + if (!::CopyConnectivity(input, output, pointMap)) { vtkErrorMacro("Error copy connectivity!"); -- GitLab From f1727942ddc7472c5f0a8bbe51a68e449667d0c6 Mon Sep 17 00:00:00 2001 From: Utkarsh Ayachit Date: Tue, 26 Apr 2022 14:26:22 -0400 Subject: [PATCH 0031/1015] vtkIOSSReader: release IOSS regions post exec. vtkIOSSReader now releases IOSS regions at end of each RequestData call. This is with the hope to release all internal datastructures that get allocated on reading the mesh. This helps address paraview/paraview#21340. --- IO/IOSS/vtkIOSSReader.cxx | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/IO/IOSS/vtkIOSSReader.cxx b/IO/IOSS/vtkIOSSReader.cxx index 7fb8f23db5ba..7634ffc27e39 100644 --- a/IO/IOSS/vtkIOSSReader.cxx +++ b/IO/IOSS/vtkIOSSReader.cxx @@ -472,6 +472,13 @@ public: } } + /** + * Little more aggressive than `ReleaseHandles` but less intense than `Reset`, + * releases all IOSS regions and thus all the meta-data IOSS may have cached + * as well. + */ + void ReleaseRegions() { this->RegionMap.clear(); } + /** * Clear all regions, databases etc. */ @@ -3197,6 +3204,7 @@ int vtkIOSSReader::ReadMesh( } internals.ClearCacheUnused(); + internals.ReleaseRegions(); return 1; } -- GitLab From 104537441b362b898b350f685719f43f2fd39936 Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Tue, 26 Apr 2022 16:16:47 -0600 Subject: [PATCH 0032/1015] Fix error related to the dot in pyi package names The code for generating .pyi file assumed that the Python package name could directly be used as a directory name. This is not true for packages such as "paraview.modules", which must be converted to "paraview/modules" to be used as a directory location. --- CMake/vtkModuleWrapPython.cmake | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/CMake/vtkModuleWrapPython.cmake b/CMake/vtkModuleWrapPython.cmake index 643c2a47b098..446b4db7caa9 100644 --- a/CMake/vtkModuleWrapPython.cmake +++ b/CMake/vtkModuleWrapPython.cmake @@ -991,6 +991,9 @@ static void ${_vtk_python_TARGET_NAME}_load() {\n") ARCHIVE DESTINATION "${_vtk_python_STATIC_MODULE_DESTINATION}") endif () # if (_vtk_python_BUILD_STATIC) + # convert package "x.y" into "x/y" to access its contents on the filesystem + string(REPLACE "." "/" _vtk_python_package_dir "${_vtk_python_PYTHON_PACKAGE}") + set(_vtk_python_pyi_files) set(_vtk_python_modules) set(_vtk_python_module_targets) @@ -999,7 +1002,7 @@ static void ${_vtk_python_TARGET_NAME}_load() {\n") TARGET "${_vtk_python_module}" PROPERTY "INTERFACE_vtk_module_library_name") list(APPEND _vtk_python_pyi_files - "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}/${_vtk_python_PYTHON_PACKAGE}/${_vtk_python_library_name}.pyi") + "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}/${_vtk_python_package_dir}/${_vtk_python_library_name}.pyi") list(APPEND _vtk_python_modules "${_vtk_python_library_name}") if (TARGET "${_vtk_python_library_name}Python") list(APPEND _vtk_python_module_targets "${_vtk_python_library_name}Python") @@ -1019,7 +1022,7 @@ static void ${_vtk_python_TARGET_NAME}_load() {\n") COMMAND "${_vtk_python_exe}" -m vtkmodules.generate_pyi -p "${_vtk_python_PYTHON_PACKAGE}" - -o "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}/${_vtk_python_PYTHON_PACKAGE}" + -o "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}/${_vtk_python_package_dir}" ${_vtk_python_modules} WORKING_DIRECTORY "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}" @@ -1030,7 +1033,7 @@ static void ${_vtk_python_TARGET_NAME}_load() {\n") install( FILES ${_vtk_python_pyi_files} - DESTINATION "${_vtk_python_MODULE_DESTINATION}/${_vtk_python_PYTHON_PACKAGE}" + DESTINATION "${_vtk_python_MODULE_DESTINATION}/${_vtk_python_package_dir}" COMPONENT "${_vtk_python_component}") add_custom_target("${_vtk_python_TARGET_NAME}_pyi" ALL -- GitLab From 01b424b0f71040609a6a0c13227d32e14f84523d Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Wed, 27 Apr 2022 00:01:51 -0400 Subject: [PATCH 0033/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 3b790afebbce..9d15a38d4c7d 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220426) +set(VTK_BUILD_VERSION 20220427) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From a81a2d7e6d544f276756b8af100ceeeb4b597f3d Mon Sep 17 00:00:00 2001 From: Utkarsh Ayachit Date: Tue, 26 Apr 2022 16:17:49 -0400 Subject: [PATCH 0034/1015] tpl: update IOSS Updating IOSS to `master` as of 2020/04/26. Brings in misc. fixes including removal of debug messages. Also remove Iotm_* classes. We don't support TextMesh in VTK, no need to build those classes. --- ThirdParty/ioss/update.sh | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/ThirdParty/ioss/update.sh b/ThirdParty/ioss/update.sh index a61f75a88d3c..387e2d94bd94 100755 --- a/ThirdParty/ioss/update.sh +++ b/ThirdParty/ioss/update.sh @@ -8,7 +8,7 @@ readonly name="ioss" readonly ownership="Seacas Upstream " readonly subtree="ThirdParty/$name/vtk$name" readonly repo="https://gitlab.kitware.com/third-party/seacas.git" -readonly tag="ioss/for/vtk-20220419-master-gafd58dee6" +readonly tag="ioss/for/vtk-20220427-master-gef9593ca93" readonly paths=" packages/seacas/libraries/ioss/src/CMakeLists.vtk.txt packages/seacas/libraries/ioss/cmake/SEACASIoss_config.h.in @@ -39,9 +39,6 @@ packages/seacas/libraries/ioss/src/heartbeat/*.C packages/seacas/libraries/ioss/src/init/*.h packages/seacas/libraries/ioss/src/init/*.C -packages/seacas/libraries/ioss/src/text_mesh/*.h -packages/seacas/libraries/ioss/src/text_mesh/*.C - packages/seacas/libraries/ioss/src/transform/*.h packages/seacas/libraries/ioss/src/transform/*.C -- GitLab From 99f4240f51c55081994dc360dd6cdb31cf1b2703 Mon Sep 17 00:00:00 2001 From: Seacas Upstream Date: Wed, 27 Apr 2022 07:19:12 -0400 Subject: [PATCH 0035/1015] ioss 2022-04-27 (97cfdb5b) Code extracted from: https://gitlab.kitware.com/third-party/seacas.git at commit 97cfdb5b8a311efaa207e4e3787ed0fdcc7a3c3e (ioss/for/vtk-20220427-master-gef9593ca93). --- CMakeLists.txt | 6 +- Ioss_Beam2.h | 4 +- Ioss_Beam3.h | 4 +- Ioss_Beam4.C | 6 +- Ioss_Beam4.h | 4 +- Ioss_DatabaseIO.C | 10 + Ioss_Edge2.h | 4 +- Ioss_Edge2D2.h | 4 +- Ioss_Edge2D3.h | 4 +- Ioss_Edge3.h | 4 +- Ioss_Edge4.h | 4 +- Ioss_ElementPermutation.C | 443 +++++ Ioss_ElementPermutation.h | 281 +++ Ioss_ElementTopology.C | 47 +- Ioss_ElementTopology.h | 35 +- Ioss_FaceGenerator.C | 6 +- Ioss_Field.h | 1 + Ioss_Getline.c | 37 +- Ioss_Hex16.h | 4 +- Ioss_Hex20.h | 3 +- Ioss_Hex27.h | 3 +- Ioss_Hex32.h | 3 +- Ioss_Hex64.h | 3 +- Ioss_Hex8.h | 3 +- Ioss_Hex9.h | 3 +- Ioss_Initializer.C | 13 + Ioss_Node.C | 1 + Ioss_Node.h | 5 +- Ioss_Pyramid13.h | 1 + Ioss_Pyramid14.h | 1 + Ioss_Pyramid18.h | 1 + Ioss_Pyramid19.h | 1 + Ioss_Pyramid5.h | 6 +- Ioss_Quad12.C | 1 - Ioss_Quad12.h | 3 +- Ioss_Quad16.C | 1 - Ioss_Quad16.h | 3 +- Ioss_Quad4.C | 1 - Ioss_Quad4.h | 3 +- Ioss_Quad6.C | 1 - Ioss_Quad6.h | 2 +- Ioss_Quad8.C | 1 - Ioss_Quad8.h | 3 +- Ioss_Quad9.C | 1 - Ioss_Quad9.h | 3 +- Ioss_Region.C | 64 +- Ioss_Shell4.h | 3 +- Ioss_Shell8.h | 3 +- Ioss_Shell9.h | 3 +- Ioss_ShellLine2D2.h | 3 +- Ioss_ShellLine2D3.h | 3 +- Ioss_Sphere.C | 7 + Ioss_Sphere.h | 8 +- Ioss_Spring2.C | 1 + Ioss_Spring2.h | 6 +- Ioss_Spring3.C | 1 + Ioss_Spring3.h | 6 +- Ioss_Super.C | 5 +- Ioss_Super.h | 10 +- Ioss_Tet10.h | 3 +- Ioss_Tet11.h | 3 +- Ioss_Tet14.h | 3 +- Ioss_Tet15.h | 3 +- Ioss_Tet16.h | 3 +- Ioss_Tet4.h | 8 +- Ioss_Tet40.h | 3 +- Ioss_Tet7.h | 3 +- Ioss_Tet8.h | 3 +- Ioss_Tri13.h | 3 +- Ioss_Tri3.h | 3 +- Ioss_Tri4.h | 3 +- Ioss_Tri4a.h | 3 +- Ioss_Tri6.h | 3 +- Ioss_Tri7.h | 3 +- Ioss_Tri9.h | 3 +- Ioss_TriShell3.h | 3 +- Ioss_TriShell4.h | 3 +- Ioss_TriShell6.h | 3 +- Ioss_TriShell7.h | 3 +- Ioss_Unknown.h | 3 +- Ioss_Utils.C | 25 + Ioss_Utils.h | 12 +- Ioss_Version.h | 2 +- Ioss_Wedge12.h | 1 + Ioss_Wedge15.h | 1 + Ioss_Wedge16.h | 1 + Ioss_Wedge18.h | 1 + Ioss_Wedge20.h | 1 + Ioss_Wedge21.h | 1 + Ioss_Wedge24.h | 1 + Ioss_Wedge52.h | 1 + Ioss_Wedge6.h | 1 + cgns/Iocgns_DatabaseIO.C | 23 +- cgns/Iocgns_ParallelDatabaseIO.C | 12 +- cgns/Iocgns_Utils.C | 6 +- exodus/Ioex_BaseDatabaseIO.C | 29 +- exodus/Ioex_DatabaseIO.C | 5 - exodus/Ioex_ParallelDatabaseIO.C | 1 - init/Ionit_Initializer.C | 6 +- robin_hash.h | 9 +- text_mesh/Iotm_DatabaseIO.C | 941 --------- text_mesh/Iotm_DatabaseIO.h | 202 -- text_mesh/Iotm_TextMesh.C | 853 --------- text_mesh/Iotm_TextMesh.h | 329 ---- text_mesh/Iotm_TextMeshTopologyMapping.h | 176 -- text_mesh/Iotm_TextMeshUtils.h | 2230 ---------------------- 106 files changed, 1060 insertions(+), 4979 deletions(-) create mode 100644 Ioss_ElementPermutation.C create mode 100644 Ioss_ElementPermutation.h delete mode 100644 text_mesh/Iotm_DatabaseIO.C delete mode 100644 text_mesh/Iotm_DatabaseIO.h delete mode 100644 text_mesh/Iotm_TextMesh.C delete mode 100644 text_mesh/Iotm_TextMesh.h delete mode 100644 text_mesh/Iotm_TextMeshTopologyMapping.h delete mode 100644 text_mesh/Iotm_TextMeshUtils.h diff --git a/CMakeLists.txt b/CMakeLists.txt index a52e56d00440..ae92d5dc7601 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -43,6 +43,7 @@ set(classes Ioss_EdgeBlock Ioss_EdgeSet Ioss_ElementBlock + Ioss_ElementPermutation Ioss_ElementSet Ioss_ElementTopology Ioss_EntityBlock @@ -159,9 +160,6 @@ set(classes init/Ionit_Initializer - text_mesh/Iotm_DatabaseIO - text_mesh/Iotm_TextMesh - transform/Iotr_Initializer transform/Iotr_MinMax transform/Iotr_Offset3D @@ -344,8 +342,6 @@ list(APPEND headers robin_set.h tokenize.h - text_mesh/Iotm_TextMeshUtils.h - vtk_ioss_mangle.h) vtk_module_find_package(PACKAGE Threads) diff --git a/Ioss_Beam2.h b/Ioss_Beam2.h index e5ccf88130c0..4da9479e1f53 100644 --- a/Ioss_Beam2.h +++ b/Ioss_Beam2.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -48,8 +49,5 @@ namespace Ioss { protected: Beam2(); - - private: - static Beam2 instance_; }; } // namespace Ioss diff --git a/Ioss_Beam3.h b/Ioss_Beam3.h index bfd54aec5d8a..61635cfa9d19 100644 --- a/Ioss_Beam3.h +++ b/Ioss_Beam3.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -48,8 +49,5 @@ namespace Ioss { protected: Beam3(); - - private: - static Beam3 instance_; }; } // namespace Ioss diff --git a/Ioss_Beam4.C b/Ioss_Beam4.C index 4054b5a793fc..2201bdd3c38a 100644 --- a/Ioss_Beam4.C +++ b/Ioss_Beam4.C @@ -1,4 +1,4 @@ -// Copyright(C) 1999-2021 National Technology & Engineering Solutions +// Copyright(C) 1999-2022 National Technology & Engineering Solutions // of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with // NTESS, the U.S. Government retains certain rights in this software. // @@ -86,11 +86,13 @@ Ioss::IntVector Ioss::Beam4::edge_connectivity(int edge_number) const connectivity[0] = 0; connectivity[1] = 1; connectivity[2] = 2; + connectivity[3] = 3; } else { connectivity[0] = 1; connectivity[1] = 0; - connectivity[2] = 2; + connectivity[2] = 3; + connectivity[3] = 2; } return connectivity; } diff --git a/Ioss_Beam4.h b/Ioss_Beam4.h index a8c118893ba2..1879bc98da20 100644 --- a/Ioss_Beam4.h +++ b/Ioss_Beam4.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -48,8 +49,5 @@ namespace Ioss { protected: Beam4(); - - private: - static Beam4 instance_; }; } // namespace Ioss diff --git a/Ioss_DatabaseIO.C b/Ioss_DatabaseIO.C index a18f83bb7045..2379f7e82430 100644 --- a/Ioss_DatabaseIO.C +++ b/Ioss_DatabaseIO.C @@ -755,6 +755,16 @@ namespace Ioss { void DatabaseIO::set_assembly_omissions(const std::vector &omissions, const std::vector &inclusions) { + if (!omissions.empty() && !inclusions.empty()) { + // Only one can be non-empty + std::ostringstream errmsg; + fmt::print(errmsg, + "ERROR: Only one of assembly omission or inclusion can be non-empty" + " [{}]\n", + get_filename()); + IOSS_ERROR(errmsg); + } + if (!omissions.empty()) { assemblyOmissions.assign(omissions.cbegin(), omissions.cend()); Ioss::sort(assemblyOmissions.begin(), assemblyOmissions.end()); diff --git a/Ioss_Edge2.h b/Ioss_Edge2.h index a660961bf3c1..893762380b95 100644 --- a/Ioss_Edge2.h +++ b/Ioss_Edge2.h @@ -27,6 +27,7 @@ namespace Ioss { ElementShape shape() const override { return ElementShape::LINE; } int spatial_dimension() const override; int parametric_dimension() const override; + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -47,8 +48,5 @@ namespace Ioss { protected: Edge2(); - - private: - static Edge2 instance_; }; } // namespace Ioss diff --git a/Ioss_Edge2D2.h b/Ioss_Edge2D2.h index d88192bc708b..9ae2b37bd1d4 100644 --- a/Ioss_Edge2D2.h +++ b/Ioss_Edge2D2.h @@ -27,6 +27,7 @@ namespace Ioss { ElementShape shape() const override { return ElementShape::LINE; } int spatial_dimension() const override; int parametric_dimension() const override; + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -47,8 +48,5 @@ namespace Ioss { protected: Edge2D2(); - - private: - static Edge2D2 instance_; }; } // namespace Ioss diff --git a/Ioss_Edge2D3.h b/Ioss_Edge2D3.h index 41d4a0c9d8f4..871d72bad4a7 100644 --- a/Ioss_Edge2D3.h +++ b/Ioss_Edge2D3.h @@ -27,6 +27,7 @@ namespace Ioss { ElementShape shape() const override { return ElementShape::LINE; } int spatial_dimension() const override; int parametric_dimension() const override; + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -47,8 +48,5 @@ namespace Ioss { protected: Edge2D3(); - - private: - static Edge2D3 instance_; }; } // namespace Ioss diff --git a/Ioss_Edge3.h b/Ioss_Edge3.h index 3f765b56a74c..f59ede829d4d 100644 --- a/Ioss_Edge3.h +++ b/Ioss_Edge3.h @@ -27,6 +27,7 @@ namespace Ioss { ElementShape shape() const override { return ElementShape::LINE; } int spatial_dimension() const override; int parametric_dimension() const override; + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -47,8 +48,5 @@ namespace Ioss { protected: Edge3(); - - private: - static Edge3 instance_; }; } // namespace Ioss diff --git a/Ioss_Edge4.h b/Ioss_Edge4.h index 13d82f2d2f84..3b4d0655dd17 100644 --- a/Ioss_Edge4.h +++ b/Ioss_Edge4.h @@ -27,6 +27,7 @@ namespace Ioss { ElementShape shape() const override { return ElementShape::LINE; } int spatial_dimension() const override; int parametric_dimension() const override; + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -47,8 +48,5 @@ namespace Ioss { protected: Edge4(); - - private: - static Edge4 instance_; }; } // namespace Ioss diff --git a/Ioss_ElementPermutation.C b/Ioss_ElementPermutation.C new file mode 100644 index 000000000000..cc28d96fda69 --- /dev/null +++ b/Ioss_ElementPermutation.C @@ -0,0 +1,443 @@ +// Copyright(C) 1999-2021 National Technology & Engineering Solutions +// of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with +// NTESS, the U.S. Government retains certain rights in this software. +// +// See packages/seacas/LICENSE for details + +#include // for IntVector +#include +#include +#include + +#include // for assert +#include // for size_t +#include // for basic_ostream, etc +#include // for string, char_traits, etc +#include // for pair +#include // for vector + +#include "vtk_fmt.h" +#include VTK_FMT(fmt/ostream.h) + +namespace Ioss { + void EPRegistry::insert(const Ioss::EPM_VP &value, bool delete_me) + { + m_registry.insert(value); + if (delete_me) { + m_deleteThese.push_back(value.second); + } + } + + EPRegistry::~EPRegistry() + { + for (auto &entry : m_deleteThese) { + delete entry; + } + } + + //========================================================================================= + ElementPermutation::ElementPermutation(std::string type, bool delete_me) : m_type(std::move(type)) + { + registry().insert(EPM_VP(Ioss::Utils::lowercase(m_type), this), delete_me); + } + + EPRegistry &ElementPermutation::registry() + { + static EPRegistry registry_; + return registry_; + } + + Ioss::ElementPermutation::~ElementPermutation() = default; + + ElementPermutation *Ioss::ElementPermutation::factory(const std::string &type) + { + std::string ltype = Ioss::Utils::lowercase(type); + + Ioss::ElementPermutation *inst = nullptr; + auto iter = registry().find(ltype); + + if (iter == registry().end()) { + std::string base1 = Ioss::SuperPermutation::basename; + if (ltype.compare(0, base1.length(), base1) == 0) { + // A ring permutation can have a varying number of nodes. Create + // a permutation type for this ring permutation. The node count + // should be encoded in the 'type' as '[base1]42' for a 42-node + // ring permutation. + + Ioss::SuperPermutation::make_super(ltype); + iter = registry().find(ltype); + } + } + + if (iter == registry().end()) { + std::ostringstream errmsg; + fmt::print(errmsg, "ERROR: The permutation type '{}' is not supported.", type); + IOSS_ERROR(errmsg); + } + else { + inst = (*iter).second; + } + return inst; + } + + NameList ElementPermutation::describe() + { + Ioss::NameList names; + describe(&names); + return names; + } + + int ElementPermutation::describe(NameList *names) + { + int count = 0; + for (auto &entry : registry()) { + names->push_back(entry.first); + count++; + } + return count; + } + + const std::string &ElementPermutation::type() const { return m_type; } + + unsigned ElementPermutation::num_permutations() const { return m_numPermutations; } + + unsigned ElementPermutation::num_positive_permutations() const + { + return m_numPositivePermutations; + } + + bool ElementPermutation::is_positive_polarity(Permutation permutation) const + { + return permutation < m_numPositivePermutations; + } + + bool ElementPermutation::valid_permutation(Permutation permutation) const + { + return permutation < m_numPermutations; + } + + bool ElementPermutation::fill_permutation_indices(Permutation permutation, + std::vector &nodeOrdinalVector) const + { + if (!valid_permutation(permutation)) + return false; + + nodeOrdinalVector.resize(num_permutation_nodes()); + const auto &ordinals = m_permutationNodeOrdinals[permutation]; + for (unsigned i = 0; i < num_permutation_nodes(); i++) { + nodeOrdinalVector[i] = ordinals[i]; + } + + return true; + } + + std::vector ElementPermutation::permutation_indices(Permutation permutation) const + { + std::vector nodeOrdinalVector; + fill_permutation_indices(permutation, nodeOrdinalVector); + return nodeOrdinalVector; + } + + uint8_t ElementPermutation::num_permutation_nodes() const { return m_numPermutationNodes; } + + void ElementPermutation::set_permutation( + uint8_t numPermutationNodes_, uint8_t numPermutations_, uint8_t numPositivePermutations_, + const std::vector> &permutationNodeOrdinals_) + { + assert(permutationNodeOrdinals_.size() == numPermutations_); + assert(numPositivePermutations_ <= numPermutations_); + + m_numPermutations = numPermutations_; + m_numPositivePermutations = numPositivePermutations_; + m_numPermutationNodes = numPermutationNodes_; + + for (const auto &ordinals : permutationNodeOrdinals_) { + if (ordinals.size() != numPermutationNodes_) { + std::ostringstream errmsg; + fmt::print(errmsg, + "ERROR: Number of low order permutation ordinals: {} for permutation: {} does " + "not match permutation value: {}", + ordinals.size(), type(), numPermutationNodes_); + IOSS_ERROR(errmsg); + } + + for (const auto ordinal : ordinals) { + if (ordinal >= numPermutationNodes_) { + std::ostringstream errmsg; + fmt::print(errmsg, "ERROR: Invalid value of ordinal: {} for permutation: {}", ordinal, + numPermutationNodes_); + IOSS_ERROR(errmsg); + } + } + } + + m_permutationNodeOrdinals = permutationNodeOrdinals_; + } + + bool ElementPermutation::equal_(const ElementPermutation &rhs, bool quiet) const + { + if (this->m_type.compare(rhs.m_type) != 0) { + if (!quiet) { + fmt::print(Ioss::OUTPUT(), "Element Permutation: NAME mismatch ({} vs. {})\n", + this->m_type.c_str(), rhs.m_type.c_str()); + } + return false; + } + + if (this->m_numPermutations != rhs.m_numPermutations) { + if (!quiet) { + fmt::print(Ioss::OUTPUT(), "Element Permutation: NUM PERMUTATION mismatch ({} vs. {})\n", + this->m_numPermutations, rhs.m_numPermutations); + } + return false; + } + + if (this->m_numPositivePermutations != rhs.m_numPositivePermutations) { + if (!quiet) { + fmt::print(Ioss::OUTPUT(), + "Element Permutation: NUM POSITIVE PERMUTATION mismatch ({} vs. {})\n", + this->m_numPositivePermutations, rhs.m_numPositivePermutations); + } + return false; + } + + if (this->m_numPermutationNodes != rhs.m_numPermutationNodes) { + if (!quiet) { + fmt::print(Ioss::OUTPUT(), + "Element Permutation: NUM PERMUTATION NODES mismatch ({} vs. {})\n", + this->m_numPermutationNodes, rhs.m_numPermutationNodes); + } + return false; + } + + if (this->m_permutationNodeOrdinals != rhs.m_permutationNodeOrdinals) { + if (!quiet) { + fmt::print(Ioss::OUTPUT(), "Element Permutation: PERMUTATION NODE ORDINALS mismatch\n"); + } + return false; + } + + return true; + } + + bool ElementPermutation::operator==(const ElementPermutation &rhs) const + { + return equal_(rhs, true); + } + + bool ElementPermutation::operator!=(const ElementPermutation &rhs) const + { + return !(*this == rhs); + } + + bool ElementPermutation::equal(const ElementPermutation &rhs) const { return equal_(rhs, false); } + + //==================================================================================================== + const char *NullPermutation::name = "none"; + + void NullPermutation::factory() { static NullPermutation registerThis; } + + NullPermutation::NullPermutation() : ElementPermutation(NullPermutation::name) + { + set_permutation(0, 0, 0, {}); + } + + //==================================================================================================== + const char *SpherePermutation::name = "sphere"; + + void SpherePermutation::factory() { static SpherePermutation registerThis; } + + SpherePermutation::SpherePermutation() : ElementPermutation(SpherePermutation::name) + { + set_permutation(1, 1, 1, {{0}}); + } + + //==================================================================================================== + const char *LinePermutation::name = "line"; + + void LinePermutation::factory() { static LinePermutation registerThis; } + + LinePermutation::LinePermutation() : ElementPermutation(LinePermutation::name) + { + set_permutation(2, 2, 1, {{0, 1}, {1, 0}}); + } + + //==================================================================================================== + const char *SpringPermutation::name = "spring"; + + void SpringPermutation::factory() { static SpringPermutation registerThis; } + + SpringPermutation::SpringPermutation() : ElementPermutation(SpringPermutation::name) + { + set_permutation(2, 2, 2, {{0, 1}, {1, 0}}); + } + + //==================================================================================================== + const char *TriPermutation::name = "tri"; + + void TriPermutation::factory() { static TriPermutation registerThis; } + + TriPermutation::TriPermutation() : ElementPermutation(TriPermutation::name) + { + set_permutation(3, 6, 3, {{0, 1, 2}, {2, 0, 1}, {1, 2, 0}, {0, 2, 1}, {2, 1, 0}, {1, 0, 2}}); + } + + //==================================================================================================== + const char *QuadPermutation::name = "quad"; + + void QuadPermutation::factory() { static QuadPermutation registerThis; } + + QuadPermutation::QuadPermutation() : ElementPermutation(QuadPermutation::name) + { + set_permutation(4, 8, 4, + {{0, 1, 2, 3}, + {3, 0, 1, 2}, + {2, 3, 0, 1}, + {1, 2, 3, 0}, + {0, 3, 2, 1}, + {3, 2, 1, 0}, + {2, 1, 0, 3}, + {1, 0, 3, 2}}); + } + + //==================================================================================================== + const char *TetPermutation::name = "tet"; + + void TetPermutation::factory() { static TetPermutation registerThis; } + + TetPermutation::TetPermutation() : ElementPermutation(TetPermutation::name) + { + set_permutation(4, 12, 12, + {{0, 1, 2, 3}, + {1, 2, 0, 3}, + {2, 0, 1, 3}, + {0, 3, 1, 2}, + {3, 1, 0, 2}, + {1, 0, 3, 2}, + {0, 2, 3, 1}, + {2, 3, 0, 1}, + {3, 0, 2, 1}, + {1, 3, 2, 0}, + {3, 2, 1, 0}, + {2, 1, 3, 0}}); + } + + //==================================================================================================== + const char *PyramidPermutation::name = "pyramid"; + + void PyramidPermutation::factory() { static PyramidPermutation registerThis; } + + PyramidPermutation::PyramidPermutation() : ElementPermutation(PyramidPermutation::name) + { + set_permutation(5, 4, 4, {{0, 1, 2, 3, 4}, {1, 2, 3, 0, 4}, {2, 3, 0, 1, 4}, {3, 0, 1, 2, 4}}); + } + + //==================================================================================================== + const char *WedgePermutation::name = "wedge"; + + void WedgePermutation::factory() { static WedgePermutation registerThis; } + + WedgePermutation::WedgePermutation() : ElementPermutation(WedgePermutation::name) + { + set_permutation(6, 6, 6, + {{0, 1, 2, 3, 4, 5}, + {1, 2, 0, 4, 5, 3}, + {2, 0, 1, 5, 3, 4}, + {3, 5, 4, 0, 2, 1}, + {5, 4, 3, 2, 1, 0}, + {4, 3, 5, 1, 0, 2}}); + } + + //==================================================================================================== + const char *HexPermutation::name = "hex"; + + void HexPermutation::factory() { static HexPermutation registerThis; } + + HexPermutation::HexPermutation() : ElementPermutation(HexPermutation::name) + { + set_permutation(8, 24, 24, + {{0, 1, 2, 3, 4, 5, 6, 7}, {0, 1, 5, 4, 3, 2, 6, 7}, {0, 4, 7, 3, 1, 5, 6, 2}, + {1, 2, 3, 0, 5, 6, 7, 4}, {1, 2, 6, 5, 0, 3, 7, 4}, {1, 5, 4, 0, 2, 6, 7, 3}, + {2, 3, 0, 1, 6, 7, 4, 5}, {2, 3, 7, 6, 1, 0, 4, 5}, {2, 6, 5, 1, 3, 7, 4, 0}, + {3, 0, 1, 2, 7, 4, 5, 6}, {3, 0, 4, 7, 2, 1, 5, 6}, {3, 7, 6, 2, 0, 4, 5, 1}, + {4, 0, 1, 5, 7, 3, 2, 6}, {4, 7, 3, 0, 5, 6, 2, 1}, {4, 7, 6, 5, 0, 3, 2, 1}, + {5, 1, 2, 6, 4, 0, 3, 7}, {5, 4, 0, 1, 6, 7, 3, 2}, {5, 4, 7, 6, 1, 0, 3, 2}, + {6, 2, 3, 7, 5, 1, 0, 4}, {6, 5, 1, 2, 7, 4, 0, 3}, {6, 5, 4, 7, 2, 1, 0, 3}, + {7, 3, 0, 4, 6, 2, 1, 5}, {7, 6, 2, 3, 4, 5, 1, 0}, {7, 6, 5, 4, 3, 2, 1, 0}}); + } + + //==================================================================================================== + // Permutation based on round-robin labeling i,e "ring" permutation + // Super permutation with 4 nodes will have the following positive permutations + // {0, 1, 2, 3}, {1, 2, 3, 0}, {2, 3, 0, 1}, {3, 0, 1, 2} + // and the following negative permutations + // {0, 3, 2, 1}, {3, 2, 1, 0}, {2, 1, 0, 3}, {1, 0, 3, 2} + const char *SuperPermutation::basename = "super"; + + std::string SuperPermutation::get_name(unsigned n) { return basename + std::to_string(n); } + + void SuperPermutation::make_super(const std::string &type) + { + // Decode name to determine number of nodes... + // Assume that digits at end specify number of nodes. + size_t digits = type.find_last_not_of("0123456789"); + if (digits != std::string::npos) { + std::string node_count_str = type.substr(digits + 1); + int node_count = std::stoi(node_count_str); + + SuperPermutation::factory(node_count); + } + } + + void SuperPermutation::factory() {} + + void SuperPermutation::factory(unsigned n) + { + auto iter = registry().find(get_name(n)); + if (iter == registry().end()) { + new SuperPermutation(n); + } + } + + // Make sure the permutation is deleted ... boolean arg is true + SuperPermutation::SuperPermutation() : ElementPermutation(get_name(0), true) + { + set_permutation(0, 0, 0, {}); + } + + // Make sure the permutation is deleted... boolean arg is true + SuperPermutation::SuperPermutation(unsigned n) : ElementPermutation(get_name(n), true) + { + set_permutation(n, 2 * n, n, get_super_permutations(n)); + } + + std::vector> SuperPermutation::get_super_permutations(unsigned n) + { + std::vector> superPerms; + + // Positive permutations + for (unsigned i = 0; i < n; i++) { + std::vector perm; + + for (unsigned j = 0; j < n; j++) { + perm.push_back((i + j) % n); + } + + superPerms.push_back(perm); + } + + // Negative permutations + for (unsigned i = 0; i < n; i++) { + std::vector perm; + + for (unsigned j = 0; j < n; j++) { + perm.push_back(((i + n) - j) % n); + } + + superPerms.push_back(perm); + } + + return superPerms; + } + +} // namespace Ioss diff --git a/Ioss_ElementPermutation.h b/Ioss_ElementPermutation.h new file mode 100644 index 000000000000..d32fbb612243 --- /dev/null +++ b/Ioss_ElementPermutation.h @@ -0,0 +1,281 @@ +// Copyright(C) 1999-2022 National Technology & Engineering Solutions +// of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with +// NTESS, the U.S. Government retains certain rights in this software. +// +// See packages/seacas/LICENSE for details + +#pragma once + +#include +#include +#include // for map, map<>::value_compare +#include // for string, operator< +#include // for vector + +namespace Ioss { + class ElementTopology; + class ElementPermutation; +} // namespace Ioss + +namespace Ioss { + + using Ordinal = uint16_t; + using Permutation = uint8_t; + + static constexpr Ordinal InvalidOrdinal = 65535; + static constexpr Permutation InvalidPermutation = 128; + + using ElementPermutationMap = std::map>; + using EPM_VP = ElementPermutationMap::value_type; + + class EPRegistry + { + public: + void insert(const Ioss::EPM_VP &value, bool delete_me); + ElementPermutationMap::iterator begin() { return m_registry.begin(); } + ElementPermutationMap::iterator end() { return m_registry.end(); } + ElementPermutationMap::iterator find(const std::string &type) { return m_registry.find(type); } + + ~EPRegistry(); + + private: + Ioss::ElementPermutationMap m_registry; + std::vector m_deleteThese; + }; + + // Permutation data is stored such that the positive permutations are listed first ... the order + // of the positive permutations within that group is irrelevant. The remaining permutations listed + // after the positive ones are the negative permutations hence, any permutation index outside of + // the positive range is a negative permutation. By convention, the first permutation listed + // matches the default listed in the Exodus manual + + class ElementPermutation + { + public: + ElementPermutation(const ElementPermutation &) = delete; + ElementPermutation &operator=(const ElementPermutation &) = delete; + + virtual ~ElementPermutation(); + + unsigned num_permutations() const; + + // The number of positive permutations must be less than or equal to the total number of + // permutations + unsigned num_positive_permutations() const; + + bool is_positive_polarity(Permutation permutation) const; + + // Permutation type is unsigned so only need to check upper bound + bool valid_permutation(Permutation permutation) const; + + // For a validated permutation, return the node ordinals + bool fill_permutation_indices(Permutation permutation, + std::vector &nodeOrdinalVector) const; + + // For a given permutation, return the node ordinals + std::vector permutation_indices(Permutation permutation) const; + + uint8_t num_permutation_nodes() const; + + const std::string &type() const; + + static ElementPermutation *factory(const std::string &type); + + /** \brief Get the names of element permutations known to Ioss. + * + * \param[out] names The list of known element topology names. + * \returns The number of known element topologies. + */ + static int describe(NameList *names); + + /** \brief Get the names of element permutations known to Ioss. + * + * \returns The list of known element topology names. + */ + static NameList describe(); + + bool operator==(const Ioss::ElementPermutation &rhs) const; + bool operator!=(const Ioss::ElementPermutation &rhs) const; + bool equal(const Ioss::ElementPermutation &rhs) const; + + protected: + explicit ElementPermutation(std::string type, bool delete_me = false); + + // Store low order permutation data regarding this topology .. the positive permutations are + // listed first If this topology is a high order topology, the data is only for the nodes of the + // associated low order topology. This implies that any usage of this assumes that the higher + // order nodes are numbered correctly relative to the low order nodes. + // + // {{0, 1, 2, 3, 4, 5}, {{0, 1, 2}, + // {2, 0, 1, 5, 3, 4}, {2, 0, 1}, + // Tri6 {1, 2, 0, 4, 5, 3}, --> Tri3 {1, 2, 0}, + // {0, 2, 1, 5, 4, 3}, {0, 2, 1}, + // {2, 1, 0, 4, 3, 5}, {2, 1, 0}, + // {1, 0, 2, 3, 5, 4}} {1, 0, 2}} + + void set_permutation(uint8_t numPermutationNodes_, uint8_t numPermutations_, + uint8_t numPositivePermutations_, + const std::vector> &permutationNodeOrdinals_); + + static EPRegistry ®istry(); + + private: + bool equal_(const Ioss::ElementPermutation &rhs, bool quiet) const; + + std::string m_type{}; + uint8_t m_numPermutations{0}; + uint8_t m_numPositivePermutations{0}; + uint8_t m_numPermutationNodes{0}; + std::vector> m_permutationNodeOrdinals{}; + }; + + class NullPermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~NullPermutation() override = default; + NullPermutation(const NullPermutation &) = delete; + + protected: + NullPermutation(); + }; + + class SpherePermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~SpherePermutation() override = default; + SpherePermutation(const SpherePermutation &) = delete; + + protected: + SpherePermutation(); + }; + + class LinePermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~LinePermutation() override = default; + LinePermutation(const LinePermutation &) = delete; + + protected: + LinePermutation(); + }; + + class SpringPermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~SpringPermutation() override = default; + SpringPermutation(const SpringPermutation &) = delete; + + protected: + SpringPermutation(); + }; + + class TriPermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~TriPermutation() override = default; + TriPermutation(const TriPermutation &) = delete; + + protected: + TriPermutation(); + }; + + class QuadPermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~QuadPermutation() override = default; + QuadPermutation(const QuadPermutation &) = delete; + + protected: + QuadPermutation(); + }; + + class TetPermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~TetPermutation() override = default; + TetPermutation(const TetPermutation &) = delete; + + protected: + TetPermutation(); + }; + + class PyramidPermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~PyramidPermutation() override = default; + PyramidPermutation(const PyramidPermutation &) = delete; + + protected: + PyramidPermutation(); + }; + + class WedgePermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~WedgePermutation() override = default; + WedgePermutation(const WedgePermutation &) = delete; + + protected: + WedgePermutation(); + }; + + class HexPermutation : public ElementPermutation + { + public: + static const char *name; + + static void factory(); + ~HexPermutation() override = default; + HexPermutation(const HexPermutation &) = delete; + + protected: + HexPermutation(); + }; + + class SuperPermutation : public ElementPermutation + { + public: + static const char *basename; + + static void make_super(const std::string &type); + static void factory(); + static void factory(unsigned n); + ~SuperPermutation() override = default; + SuperPermutation(const SuperPermutation &) = delete; + + static std::string get_name(unsigned n); + + protected: + SuperPermutation(); + explicit SuperPermutation(unsigned n); + + static std::vector> get_super_permutations(unsigned n); + }; +} // namespace Ioss diff --git a/Ioss_ElementTopology.C b/Ioss_ElementTopology.C index 56605c5b9def..e1ebde564e37 100644 --- a/Ioss_ElementTopology.C +++ b/Ioss_ElementTopology.C @@ -4,7 +4,8 @@ // // See packages/seacas/LICENSE for details -#include // for IntVector +#include // for IntVector +#include // for ElementPermutation #include #include // for Super #include @@ -359,3 +360,47 @@ bool Ioss::ElementTopology::equal(const Ioss::ElementTopology &rhs) const { return equal_(rhs, false); } + +Ioss::ElementPermutation *Ioss::ElementTopology::permutation() const +{ + auto perm = Ioss::ElementPermutation::factory(base_topology_permutation_name()); + assert(perm != nullptr); + if (validate_permutation_nodes()) { + if (static_cast(perm->num_permutation_nodes()) != number_corner_nodes()) { + std::ostringstream errmsg; + fmt::print(errmsg, + "ERROR: The permutation node count: {} for topology '{}' does not match expected " + "value: {}.", + perm->num_permutation_nodes(), name(), number_corner_nodes()); + IOSS_ERROR(errmsg); + } + } + return perm; +} + +const std::string &Ioss::ElementTopology::base_topology_permutation_name() const +{ + return topology_shape_to_permutation_name(shape()); +} + +const std::string & +Ioss::ElementTopology::topology_shape_to_permutation_name(Ioss::ElementShape topoShape) +{ + static ElementShapeMap shapeToPermutationNameMap_ = { + {ElementShape::UNKNOWN, "none"}, {ElementShape::POINT, "none"}, + {ElementShape::SPHERE, "sphere"}, {ElementShape::LINE, "line"}, + {ElementShape::SPRING, "spring"}, {ElementShape::TRI, "tri"}, + {ElementShape::QUAD, "quad"}, {ElementShape::TET, "tet"}, + {ElementShape::PYRAMID, "pyramid"}, {ElementShape::WEDGE, "wedge"}, + {ElementShape::HEX, "hex"}, {ElementShape::SUPER, "super"}}; + + auto iter = shapeToPermutationNameMap_.find(topoShape); + if (iter == shapeToPermutationNameMap_.end()) { + std::ostringstream errmsg; + fmt::print(errmsg, "ERROR: The topology shape '{}' is not supported.", + Ioss::Utils::shape_to_string(topoShape)); + IOSS_ERROR(errmsg); + } + + return iter->second; +} diff --git a/Ioss_ElementTopology.h b/Ioss_ElementTopology.h index 43df46c028f1..3a74588f7988 100644 --- a/Ioss_ElementTopology.h +++ b/Ioss_ElementTopology.h @@ -9,16 +9,34 @@ #include "vtk_ioss_mangle.h" #include -#include // for map, map<>::value_compare -#include // for string, operator< -#include // for vector +#include // for ElementPermutation +#include // for map, map<>::value_compare +#include // for set +#include // for string, operator< +#include // for vector + namespace Ioss { class ElementTopology; + class ElementPermutation; } // namespace Ioss namespace Ioss { - enum class ElementShape { UNKNOWN, POINT, LINE, TRI, QUAD, TET, PYRAMID, WEDGE, HEX }; + enum class ElementShape : unsigned { + UNKNOWN, + POINT, + SPHERE, + LINE, + SPRING, + TRI, + QUAD, + TET, + PYRAMID, + WEDGE, + HEX, + SUPER + }; + using ElementShapeMap = std::map; using ElementTopologyMap = std::map>; using ETM_VP = ElementTopologyMap::value_type; @@ -67,7 +85,7 @@ namespace Ioss { //: Return whether the topology describes an "element". If it //: isn't an element, then it is a component of an element. For - // example, a quadrilater Shell is an element, but a QuadFace is + // example, a quadrilateral Shell is an element, but a QuadFace is // not. // // Default implementation returns true if spatial_dimension() == @@ -75,6 +93,7 @@ namespace Ioss { // "Structural" elements (shells, rods, trusses, particles) need // to override. virtual bool is_element() const; + virtual bool is_shell() const = 0; virtual int spatial_dimension() const = 0; virtual int parametric_dimension() const = 0; virtual int order() const = 0; @@ -119,14 +138,20 @@ namespace Ioss { bool operator!=(const Ioss::ElementTopology &rhs) const; bool equal(const Ioss::ElementTopology &rhs) const; + ElementPermutation *permutation() const; + virtual const std::string &base_topology_permutation_name() const; + protected: ElementTopology(std::string type, std::string master_elem_name, bool delete_me = false); + virtual bool validate_permutation_nodes() const { return true; } private: bool equal_(const Ioss::ElementTopology &rhs, bool quiet) const; const std::string name_; const std::string masterElementName_; + static const std::string &topology_shape_to_permutation_name(Ioss::ElementShape topoShape); + static ETRegistry ®istry(); }; } // namespace Ioss diff --git a/Ioss_FaceGenerator.C b/Ioss_FaceGenerator.C index 85d66c6a72a9..a60681f3554b 100644 --- a/Ioss_FaceGenerator.C +++ b/Ioss_FaceGenerator.C @@ -393,12 +393,14 @@ namespace Ioss { #if DO_TIMING auto endf = std::chrono::steady_clock::now(); #endif - size_t face_count = 0; for (auto &eb : ebs) { resolve_parallel_faces(region_, faces_[eb->name()], hashIds_, (INT)0); - face_count += faces_[eb->name()].size(); } #if DO_TIMING + size_t face_count = 0; + for (auto &eb : ebs) { + face_count += faces_[eb->name()].size(); + } auto endp = std::chrono::steady_clock::now(); auto diffh = endh - starth; auto difff = endf - endh; diff --git a/Ioss_Field.h b/Ioss_Field.h index 194790b6fdb3..9fe675658c81 100644 --- a/Ioss_Field.h +++ b/Ioss_Field.h @@ -112,6 +112,7 @@ namespace Ioss { /** \brief Get name of the 'component_indexth` component (1-based) * * \param[in] component_index 1-based index of the component to be named + * \param[in] in_out Is the field being read or written * \param[in] suffix optional suffix separator to be used if the separator * on the field is set to '1' which means 'unset' * \returns name of the specified component diff --git a/Ioss_Getline.c b/Ioss_Getline.c index 707fdb4c5cb5..7e40b42e546e 100644 --- a/Ioss_Getline.c +++ b/Ioss_Getline.c @@ -571,13 +571,7 @@ static void io_gl_fixup(const char *prompt, int change, int cursor) static int off_left; /* true if more text left of screen */ static char last_prompt[80] = ""; int left = 0, right = -1; /* bounds for redraw */ - int pad; /* how much to erase at end of line */ - int backup; /* how far to backup before fixing */ - int new_shift; /* value of shift based on cursor */ - int extra; /* adjusts when shift (scroll) happens */ - int i; - int new_right = -1; /* alternate right bound, using io_gl_extent */ - int l1, l2; + int new_right = -1; /* alternate right bound, using io_gl_extent */ if (change == -2) { /* reset */ io_gl_pos = io_gl_cnt = io_gl_shift = off_right = off_left = 0; @@ -588,8 +582,8 @@ static void io_gl_fixup(const char *prompt, int change, int cursor) io_gl_width = io_gl_termw - strlen(prompt); } else if (strcmp(prompt, last_prompt) != 0) { - l1 = strlen(last_prompt); - l2 = strlen(prompt); + int l1 = strlen(last_prompt); + int l2 = strlen(prompt); io_gl_cnt = io_gl_cnt + l1 - l2; copy_string(last_prompt, prompt, 80); io_gl_putc('\r'); @@ -598,8 +592,9 @@ static void io_gl_fixup(const char *prompt, int change, int cursor) io_gl_width = io_gl_termw - l2; change = 0; } - pad = (off_right) ? io_gl_width - 1 : io_gl_cnt - io_gl_shift; /* old length */ - backup = io_gl_pos - io_gl_shift; + /* how much to erase at end of line */ + int pad = (off_right) ? io_gl_width - 1 : io_gl_cnt - io_gl_shift; /* old length */ + int backup = io_gl_pos - io_gl_shift; /* how far to backup before fixing */ if (change >= 0) { io_gl_cnt = strlen(io_gl_buf); if (change > io_gl_cnt) @@ -617,11 +612,11 @@ static void io_gl_fixup(const char *prompt, int change, int cursor) io_gl_beep(); cursor = 0; } - if (off_right || (off_left && cursor < io_gl_shift + io_gl_width - io_gl_scroll / 2)) + int extra = 0; /* adjusts when shift (scroll) happens */ + if (off_right || (off_left && cursor < io_gl_shift + io_gl_width - io_gl_scroll / 2)) { extra = 2; /* shift the scrolling boundary */ - else - extra = 0; - new_shift = cursor + extra + io_gl_scroll - io_gl_width; + } + int new_shift = cursor + extra + io_gl_scroll - io_gl_width; if (new_shift > 0) { new_shift /= io_gl_scroll; new_shift *= io_gl_scroll; @@ -650,13 +645,13 @@ static void io_gl_fixup(const char *prompt, int change, int cursor) pad -= (off_right) ? io_gl_width - 1 : io_gl_cnt - io_gl_shift; pad = (pad < 0) ? 0 : pad; if (left <= right) { /* clean up screen */ - for (i = 0; i < backup; i++) + for (int i = 0; i < backup; i++) io_gl_putc('\b'); if (left == io_gl_shift && off_left) { io_gl_putc('$'); left++; } - for (i = left; i < new_right; i++) + for (int i = left; i < new_right; i++) io_gl_putc(io_gl_buf[i]); io_gl_pos = new_right; if (off_right && new_right == right) { @@ -664,19 +659,19 @@ static void io_gl_fixup(const char *prompt, int change, int cursor) io_gl_pos++; } else { - for (i = 0; i < pad; i++) /* erase remains of prev line */ + for (int i = 0; i < pad; i++) /* erase remains of prev line */ io_gl_putc(' '); io_gl_pos += pad; } } - i = io_gl_pos - cursor; /* move to final cursor location */ + int i = io_gl_pos - cursor; /* move to final cursor location */ if (i > 0) { while (i--) io_gl_putc('\b'); } else { - for (i = io_gl_pos; i < cursor; i++) - io_gl_putc(io_gl_buf[i]); + for (int ii = io_gl_pos; ii < cursor; ii++) + io_gl_putc(io_gl_buf[ii]); } io_gl_pos = cursor; } diff --git a/Ioss_Hex16.h b/Ioss_Hex16.h index e69b035aa503..e744216e2c29 100644 --- a/Ioss_Hex16.h +++ b/Ioss_Hex16.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; bool edges_similar() const override { return false; } // true if all edges have same topology @@ -53,8 +54,5 @@ namespace Ioss { protected: Hex16(); - - private: - static Hex16 instance_; }; } // namespace Ioss diff --git a/Ioss_Hex20.h b/Ioss_Hex20.h index 406064c9ffa9..4f5718aef28c 100644 --- a/Ioss_Hex20.h +++ b/Ioss_Hex20.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Hex20(); private: - static Hex20 instance_; - Hex20(const Hex20 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Hex27.h b/Ioss_Hex27.h index ed72c9f688da..2d1c2b0f027f 100644 --- a/Ioss_Hex27.h +++ b/Ioss_Hex27.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Hex27(); private: - static Hex27 instance_; - Hex27(const Hex27 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Hex32.h b/Ioss_Hex32.h index a5a84d5a96bb..1eed183c9c5f 100644 --- a/Ioss_Hex32.h +++ b/Ioss_Hex32.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Hex32(); private: - static Hex32 instance_; - Hex32(const Hex32 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Hex64.h b/Ioss_Hex64.h index d08acf7ad9c0..365b120d35c4 100644 --- a/Ioss_Hex64.h +++ b/Ioss_Hex64.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Hex64(); private: - static Hex64 instance_; - Hex64(const Hex64 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Hex8.h b/Ioss_Hex8.h index a73a24b6fda7..23ba699bc326 100644 --- a/Ioss_Hex8.h +++ b/Ioss_Hex8.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Hex8(); private: - static Hex8 instance_; - Hex8(const Hex8 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Hex9.h b/Ioss_Hex9.h index 88dbc0594c4c..d2f1708a164c 100644 --- a/Ioss_Hex9.h +++ b/Ioss_Hex9.h @@ -25,6 +25,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { Hex9(); private: - static Hex9 instance_; - Hex9(const Hex9 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Initializer.C b/Ioss_Initializer.C index 56628a7b39c1..6afd3af4b5ba 100644 --- a/Ioss_Initializer.C +++ b/Ioss_Initializer.C @@ -5,6 +5,7 @@ // See packages/seacas/LICENSE for details #include +#include #include #if defined IOSS_THREADSAFE #include @@ -14,6 +15,18 @@ Ioss::Initializer::Initializer() { // List all storage types here with a call to their factory method. // This is Used to get the linker to pull in all needed libraries. + Ioss::NullPermutation::factory(); + Ioss::SpherePermutation::factory(); + Ioss::LinePermutation::factory(); + Ioss::SpringPermutation::factory(); + Ioss::TriPermutation::factory(); + Ioss::QuadPermutation::factory(); + Ioss::TetPermutation::factory(); + Ioss::PyramidPermutation::factory(); + Ioss::WedgePermutation::factory(); + Ioss::HexPermutation::factory(); + Ioss::SuperPermutation::factory(); + Ioss::Sphere::factory(); Ioss::Edge2::factory(); diff --git a/Ioss_Node.C b/Ioss_Node.C index 87d6e13bf079..89fb9d625bdc 100644 --- a/Ioss_Node.C +++ b/Ioss_Node.C @@ -7,6 +7,7 @@ //------------------------------------------------------------------------ // Define a variable type for storage of this elements connectivity #include "Ioss_CodeTypes.h" // for IntVector +#include "Ioss_ElementPermutation.h" // for ElementPermutation #include "Ioss_ElementTopology.h" // for ElementTopology #include // for ElementVariableType #include diff --git a/Ioss_Node.h b/Ioss_Node.h index 73646a64388f..735394329fe1 100644 --- a/Ioss_Node.h +++ b/Ioss_Node.h @@ -27,6 +27,7 @@ namespace Ioss { ElementShape shape() const override { return ElementShape::POINT; } int spatial_dimension() const override; int parametric_dimension() const override; + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -47,8 +48,6 @@ namespace Ioss { protected: Node(); - - private: - static Node instance_; + bool validate_permutation_nodes() const override { return false; } }; } // namespace Ioss diff --git a/Ioss_Pyramid13.h b/Ioss_Pyramid13.h index c270b5e957d6..8eaeef07abfc 100644 --- a/Ioss_Pyramid13.h +++ b/Ioss_Pyramid13.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Pyramid14.h b/Ioss_Pyramid14.h index 6d8a22e2b325..2375358ec42a 100644 --- a/Ioss_Pyramid14.h +++ b/Ioss_Pyramid14.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Pyramid18.h b/Ioss_Pyramid18.h index e3db3f85ad61..a7d1f1fdeaf1 100644 --- a/Ioss_Pyramid18.h +++ b/Ioss_Pyramid18.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Pyramid19.h b/Ioss_Pyramid19.h index 73cafdeb2406..dcf135d85bcf 100644 --- a/Ioss_Pyramid19.h +++ b/Ioss_Pyramid19.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Pyramid5.h b/Ioss_Pyramid5.h index 722de949a499..451f2e897424 100644 --- a/Ioss_Pyramid5.h +++ b/Ioss_Pyramid5.h @@ -8,8 +8,9 @@ #include "vtk_ioss_mangle.h" -#include // for IntVector -#include // for ElementTopology +#include // for IntVector +#include // for ElementPermutation +#include // for ElementTopology // STL Includes @@ -27,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Quad12.C b/Ioss_Quad12.C index 3a83fb50188e..d4c2f1e986b0 100644 --- a/Ioss_Quad12.C +++ b/Ioss_Quad12.C @@ -25,7 +25,6 @@ namespace Ioss { }; } // namespace Ioss // ======================================================================== -Ioss::Quad12 Ioss::Quad12::instance_; namespace { struct Constants diff --git a/Ioss_Quad12.h b/Ioss_Quad12.h index 48fd6d306c4f..c61cc7f2217c 100644 --- a/Ioss_Quad12.h +++ b/Ioss_Quad12.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { Quad12(); private: - static Quad12 instance_; - Quad12(const Quad12 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Quad16.C b/Ioss_Quad16.C index 7ddd5ab63b91..f48fc6d735a2 100644 --- a/Ioss_Quad16.C +++ b/Ioss_Quad16.C @@ -25,7 +25,6 @@ namespace Ioss { }; } // namespace Ioss // ======================================================================== -Ioss::Quad16 Ioss::Quad16::instance_; namespace { struct Constants diff --git a/Ioss_Quad16.h b/Ioss_Quad16.h index c2ccbaf57b30..3557a446c4ab 100644 --- a/Ioss_Quad16.h +++ b/Ioss_Quad16.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { Quad16(); private: - static Quad16 instance_; - Quad16(const Quad16 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Quad4.C b/Ioss_Quad4.C index cbdacb580a8d..979c7d2d72fa 100644 --- a/Ioss_Quad4.C +++ b/Ioss_Quad4.C @@ -25,7 +25,6 @@ namespace Ioss { }; } // namespace Ioss // ======================================================================== -Ioss::Quad4 Ioss::Quad4::instance_; namespace { struct Constants diff --git a/Ioss_Quad4.h b/Ioss_Quad4.h index 949bb793e267..eb72d18050e9 100644 --- a/Ioss_Quad4.h +++ b/Ioss_Quad4.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { Quad4(); private: - static Quad4 instance_; - Quad4(const Quad4 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Quad6.C b/Ioss_Quad6.C index 78b75d14003b..41c64947a45d 100644 --- a/Ioss_Quad6.C +++ b/Ioss_Quad6.C @@ -25,7 +25,6 @@ namespace Ioss { }; } // namespace Ioss // ======================================================================== -Ioss::Quad6 Ioss::Quad6::instance_; namespace { struct Constants diff --git a/Ioss_Quad6.h b/Ioss_Quad6.h index abe220ec31d9..2ec3ed6f5fe9 100644 --- a/Ioss_Quad6.h +++ b/Ioss_Quad6.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; bool edges_similar() const override { return false; } // true if all edges have same topology @@ -49,7 +50,6 @@ namespace Ioss { Ioss::ElementTopology *edge_type(int edge_number = 0) const override; private: - static Quad6 instance_; Quad6(); }; } // namespace Ioss diff --git a/Ioss_Quad8.C b/Ioss_Quad8.C index f3a9f529581a..d5883b18656f 100644 --- a/Ioss_Quad8.C +++ b/Ioss_Quad8.C @@ -25,7 +25,6 @@ namespace Ioss { }; } // namespace Ioss // ======================================================================== -Ioss::Quad8 Ioss::Quad8::instance_; namespace { struct Constants diff --git a/Ioss_Quad8.h b/Ioss_Quad8.h index 8834a5af9ddc..87d7db0975d7 100644 --- a/Ioss_Quad8.h +++ b/Ioss_Quad8.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { Quad8(); private: - static Quad8 instance_; - Quad8(const Quad8 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Quad9.C b/Ioss_Quad9.C index 72211c9087cd..c8b3674f0bf7 100644 --- a/Ioss_Quad9.C +++ b/Ioss_Quad9.C @@ -25,7 +25,6 @@ namespace Ioss { }; } // namespace Ioss // ======================================================================== -Ioss::Quad9 Ioss::Quad9::instance_; namespace { struct Constants diff --git a/Ioss_Quad9.h b/Ioss_Quad9.h index bff27cbdc61d..017fef4b2bfb 100644 --- a/Ioss_Quad9.h +++ b/Ioss_Quad9.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { Quad9(); private: - static Quad9 instance_; - Quad9(const Quad9 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Region.C b/Ioss_Region.C index 7bb9ecdedcdb..dcf53bea99ac 100644 --- a/Ioss_Region.C +++ b/Ioss_Region.C @@ -544,57 +544,57 @@ namespace Ioss { " Blobs = {42:{24}}\t {38:{23}s}\t Blob = {43:{25}}\t{55:{25}}\n\n" " Time steps = {32:{24}}\n", get_database()->get_filename(), mesh_type_string(), - fmt::group_digits(get_property("spatial_dimension").get_int()), + fmt::group_digits(get_property("spatial_dimension").get_int()), fmt::group_digits(get_property("node_count").get_int()), - fmt::group_digits(get_property("edge_count").get_int()), + fmt::group_digits(get_property("edge_count").get_int()), fmt::group_digits(get_property("face_count").get_int()), - fmt::group_digits(get_property("element_count").get_int()), + fmt::group_digits(get_property("element_count").get_int()), fmt::group_digits(get_property("node_block_count").get_int()), - fmt::group_digits(get_property("edge_block_count").get_int()), + fmt::group_digits(get_property("edge_block_count").get_int()), fmt::group_digits(get_property("face_block_count").get_int()), fmt::group_digits(get_property("element_block_count").get_int()), - fmt::group_digits(get_property("structured_block_count").get_int()), + fmt::group_digits(get_property("structured_block_count").get_int()), fmt::group_digits(get_property("node_set_count").get_int()), - fmt::group_digits(get_property("edge_set_count").get_int()), + fmt::group_digits(get_property("edge_set_count").get_int()), fmt::group_digits(get_property("face_set_count").get_int()), - fmt::group_digits(get_property("element_set_count").get_int()), + fmt::group_digits(get_property("element_set_count").get_int()), fmt::group_digits(get_property("side_set_count").get_int()), - fmt::group_digits(total_cells), - fmt::group_digits(total_ns_nodes), - fmt::group_digits(total_es_edges), - fmt::group_digits(total_fs_faces), - fmt::group_digits(total_es_elements), + fmt::group_digits(total_cells), + fmt::group_digits(total_ns_nodes), + fmt::group_digits(total_es_edges), + fmt::group_digits(total_fs_faces), + fmt::group_digits(total_es_elements), fmt::group_digits(total_sides), - num_width, - sb_width, - vr_width, - fmt::group_digits(num_glo_vars), - fmt::group_digits(num_nod_vars), - fmt::group_digits(num_ele_vars), + num_width, + sb_width, + vr_width, + fmt::group_digits(num_glo_vars), + fmt::group_digits(num_nod_vars), + fmt::group_digits(num_ele_vars), fmt::group_digits(num_str_vars), - fmt::group_digits(num_ns_vars), - fmt::group_digits(num_ss_vars), - fmt::group_digits(num_ts), - fmt::group_digits(num_edg_vars), - fmt::group_digits(num_fac_vars), - fmt::group_digits(num_es_vars), + fmt::group_digits(num_ns_vars), + fmt::group_digits(num_ss_vars), + fmt::group_digits(num_ts), + fmt::group_digits(num_edg_vars), + fmt::group_digits(num_fac_vars), + fmt::group_digits(num_es_vars), fmt::group_digits(num_fs_vars), - fmt::group_digits(num_els_vars), - " ", - get_database()->get_format(), + fmt::group_digits(num_els_vars), + " ", + get_database()->get_format(), fmt::group_digits(get_property("assembly_count").get_int()), fmt::group_digits(num_asm_vars) , fmt::group_digits(get_property("blob_count").get_int()), fmt::group_digits(num_blob_vars), fmt::group_digits(num_glo_red_vars), - fmt::group_digits(num_nod_red_vars), - fmt::group_digits(num_edg_red_vars), - fmt::group_digits(num_fac_red_vars), + fmt::group_digits(num_nod_red_vars), + fmt::group_digits(num_edg_red_vars), + fmt::group_digits(num_fac_red_vars), fmt::group_digits(num_ele_red_vars), fmt::group_digits(num_str_red_vars), fmt::group_digits(num_ns_red_vars), - fmt::group_digits(num_es_red_vars), - fmt::group_digits(num_fs_red_vars), + fmt::group_digits(num_es_red_vars), + fmt::group_digits(num_fs_red_vars), fmt::group_digits(num_els_red_vars), fmt::group_digits(num_asm_red_vars), fmt::group_digits(num_blob_red_vars)); diff --git a/Ioss_Shell4.h b/Ioss_Shell4.h index 8d52d729d05e..3950c99b45cc 100644 --- a/Ioss_Shell4.h +++ b/Ioss_Shell4.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return true; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Shell4(); private: - static Shell4 instance_; - Shell4(const Shell4 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Shell8.h b/Ioss_Shell8.h index 8f856d748f5a..56259ab7da83 100644 --- a/Ioss_Shell8.h +++ b/Ioss_Shell8.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return true; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Shell8(); private: - static Shell8 instance_; - Shell8(const Shell8 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Shell9.h b/Ioss_Shell9.h index 88f0ac06b38a..b6cd647be527 100644 --- a/Ioss_Shell9.h +++ b/Ioss_Shell9.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return true; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Shell9(); private: - static Shell9 instance_; - Shell9(const Shell9 &) = delete; }; } // namespace Ioss diff --git a/Ioss_ShellLine2D2.h b/Ioss_ShellLine2D2.h index 3670d9b6897b..c7e741788795 100644 --- a/Ioss_ShellLine2D2.h +++ b/Ioss_ShellLine2D2.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return true; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { ShellLine2D2(); private: - static ShellLine2D2 instance_; - ShellLine2D2(const ShellLine2D2 &) = delete; }; } // namespace Ioss diff --git a/Ioss_ShellLine2D3.h b/Ioss_ShellLine2D3.h index 51abab5b338e..1004a0299133 100644 --- a/Ioss_ShellLine2D3.h +++ b/Ioss_ShellLine2D3.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return true; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { ShellLine2D3(); private: - static ShellLine2D3 instance_; - ShellLine2D3(const ShellLine2D3 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Sphere.C b/Ioss_Sphere.C index aa97bcb0b251..41def1835571 100644 --- a/Ioss_Sphere.C +++ b/Ioss_Sphere.C @@ -5,6 +5,7 @@ // See packages/seacas/LICENSE for details #include "Ioss_CodeTypes.h" // for IntVector +#include "Ioss_ElementPermutation.h" // for ElementPermutation #include "Ioss_ElementTopology.h" // for ElementTopology #include // for ElementVariableType #include @@ -56,6 +57,12 @@ Ioss::Sphere::Sphere() : Ioss::ElementTopology(Ioss::Sphere::name, "Particle") Ioss::ElementTopology::alias(Ioss::Sphere::name, "point1"); } +const std::string &Ioss::Sphere::base_topology_permutation_name() const +{ + static std::string permutationName(Ioss::SpherePermutation::name); + return permutationName; +} + int Ioss::Sphere::parametric_dimension() const { return 0; } int Ioss::Sphere::spatial_dimension() const { return 3; } int Ioss::Sphere::order() const { return 1; } diff --git a/Ioss_Sphere.h b/Ioss_Sphere.h index cfff4a078bc6..17a77c585998 100644 --- a/Ioss_Sphere.h +++ b/Ioss_Sphere.h @@ -24,10 +24,11 @@ namespace Ioss { ~Sphere() override = default; Sphere(const Sphere &) = delete; - ElementShape shape() const override { return ElementShape::POINT; } + ElementShape shape() const override { return ElementShape::SPHERE; } int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -46,10 +47,9 @@ namespace Ioss { Ioss::ElementTopology *face_type(int face_number = 0) const override; Ioss::ElementTopology *edge_type(int edge_number = 0) const override; + const std::string &base_topology_permutation_name() const override; + protected: Sphere(); - - private: - static Sphere instance_; }; } // namespace Ioss diff --git a/Ioss_Spring2.C b/Ioss_Spring2.C index 16ebb39a146e..71fcf3bf7633 100644 --- a/Ioss_Spring2.C +++ b/Ioss_Spring2.C @@ -5,6 +5,7 @@ // See packages/seacas/LICENSE for details #include "Ioss_CodeTypes.h" // for IntVector +#include "Ioss_ElementPermutation.h" // for ElementPermutation #include "Ioss_ElementTopology.h" // for ElementTopology #include // for ElementVariableType #include diff --git a/Ioss_Spring2.h b/Ioss_Spring2.h index da9c134fc335..9a884ab86f12 100644 --- a/Ioss_Spring2.h +++ b/Ioss_Spring2.h @@ -24,10 +24,11 @@ namespace Ioss { ~Spring2() override = default; Spring2(const Spring2 &) = delete; - ElementShape shape() const override { return ElementShape::LINE; } + ElementShape shape() const override { return ElementShape::SPRING; } int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -48,8 +49,5 @@ namespace Ioss { protected: Spring2(); - - private: - static Spring2 instance_; }; } // namespace Ioss diff --git a/Ioss_Spring3.C b/Ioss_Spring3.C index a0ca166dd2b0..407e963f12a0 100644 --- a/Ioss_Spring3.C +++ b/Ioss_Spring3.C @@ -5,6 +5,7 @@ // See packages/seacas/LICENSE for details #include "Ioss_CodeTypes.h" // for IntVector +#include "Ioss_ElementPermutation.h" // for ElementPermutation #include "Ioss_ElementTopology.h" // for ElementTopology #include // for ElementVariableType #include diff --git a/Ioss_Spring3.h b/Ioss_Spring3.h index 78daa5853224..d5ef0d09dc6e 100644 --- a/Ioss_Spring3.h +++ b/Ioss_Spring3.h @@ -24,10 +24,11 @@ namespace Ioss { ~Spring3() override = default; Spring3(const Spring3 &) = delete; - ElementShape shape() const override { return ElementShape::LINE; } + ElementShape shape() const override { return ElementShape::SPRING; } int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -48,8 +49,5 @@ namespace Ioss { protected: Spring3(); - - private: - static Spring3 instance_; }; } // namespace Ioss diff --git a/Ioss_Super.C b/Ioss_Super.C index 48b732e41af4..555a2eacab3b 100644 --- a/Ioss_Super.C +++ b/Ioss_Super.C @@ -34,7 +34,8 @@ void Ioss::Super::factory() {} // argument to the ElementTopology constructor Ioss::Super::Super(const std::string &my_name, int node_count) : Ioss::ElementTopology(my_name, "Unknown", true), nodeCount(node_count), - storageType(new St_Super(my_name, node_count)) + storageType(new St_Super(my_name, node_count)), + baseTopologyName(Ioss::Utils::lowercase(my_name)) { } @@ -48,6 +49,8 @@ void Ioss::Super::make_super(const std::string &type) if (digits != std::string::npos) { std::string node_count_str = type.substr(digits + 1); int node_count = std::stoi(node_count_str); + + Ioss::SuperPermutation::factory(node_count); new Ioss::Super(type, node_count); } } diff --git a/Ioss_Super.h b/Ioss_Super.h index 3621006508df..a78986882751 100644 --- a/Ioss_Super.h +++ b/Ioss_Super.h @@ -9,9 +9,9 @@ #include "vtk_ioss_mangle.h" #include "Ioss_Super.h" -#include // for IntVector -#include // for ElementTopology -#include // for string +#include // for IntVector +#include // for ElementPermutation +#include // for string namespace Ioss { class ElementVariableType; } // namespace Ioss @@ -36,6 +36,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -56,10 +57,13 @@ namespace Ioss { Ioss::ElementTopology *face_type(int face_number = 0) const override; Ioss::ElementTopology *edge_type(int edge_number = 0) const override; + const std::string &base_topology_permutation_name() const override { return baseTopologyName; } + protected: private: int nodeCount; Ioss::ElementVariableType *storageType{}; + std::string baseTopologyName{}; Super(const Super &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tet10.h b/Ioss_Tet10.h index 6704a9d6ee75..6007958cd997 100644 --- a/Ioss_Tet10.h +++ b/Ioss_Tet10.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Tet10(); private: - static Tet10 instance_; - Tet10(const Tet10 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tet11.h b/Ioss_Tet11.h index dc7c96d2e2d2..e62b501973a7 100644 --- a/Ioss_Tet11.h +++ b/Ioss_Tet11.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Tet11(); private: - static Tet11 instance_; - Tet11(const Tet11 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tet14.h b/Ioss_Tet14.h index 07ce25bda8ae..1d16f34a9198 100644 --- a/Ioss_Tet14.h +++ b/Ioss_Tet14.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Tet14(); private: - static Tet14 instance_; - Tet14(const Tet14 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tet15.h b/Ioss_Tet15.h index e1ed13904123..a3d524c15a44 100644 --- a/Ioss_Tet15.h +++ b/Ioss_Tet15.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Tet15(); private: - static Tet15 instance_; - Tet15(const Tet15 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tet16.h b/Ioss_Tet16.h index 045e8a9685e2..8253baa22ad5 100644 --- a/Ioss_Tet16.h +++ b/Ioss_Tet16.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Tet16(); private: - static Tet16 instance_; - Tet16(const Tet16 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tet4.h b/Ioss_Tet4.h index 0e314c0c9abe..8ce33273ddb8 100644 --- a/Ioss_Tet4.h +++ b/Ioss_Tet4.h @@ -8,8 +8,9 @@ #include "vtk_ioss_mangle.h" -#include // for IntVector -#include // for ElementTopology +#include // for IntVector +#include // for ElementPermutatio +#include // for ElementTopology // STL Includes @@ -27,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +53,6 @@ namespace Ioss { Tet4(); private: - static Tet4 instance_; - Tet4(const Tet4 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tet40.h b/Ioss_Tet40.h index a4dc545b03cf..74a45db4e569 100644 --- a/Ioss_Tet40.h +++ b/Ioss_Tet40.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Tet40(); private: - static Tet40 instance_; - Tet40(const Tet40 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tet7.h b/Ioss_Tet7.h index fa170bca483c..cfaab07113c0 100644 --- a/Ioss_Tet7.h +++ b/Ioss_Tet7.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -54,8 +55,6 @@ namespace Ioss { Tet7(); private: - static Tet7 instance_; - Tet7(const Tet7 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tet8.h b/Ioss_Tet8.h index c791d2984cdc..d589dba27d06 100644 --- a/Ioss_Tet8.h +++ b/Ioss_Tet8.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -51,8 +52,6 @@ namespace Ioss { Tet8(); private: - static Tet8 instance_; - Tet8(const Tet8 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tri13.h b/Ioss_Tri13.h index f1fb4f5cd8c8..f18f875ea387 100644 --- a/Ioss_Tri13.h +++ b/Ioss_Tri13.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -50,8 +51,6 @@ namespace Ioss { Tri13(); private: - static Tri13 instance_; - Tri13(const Tri13 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tri3.h b/Ioss_Tri3.h index 8d81ec1cbe54..e9fee7dc2c5e 100644 --- a/Ioss_Tri3.h +++ b/Ioss_Tri3.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { Tri3(); private: - static Tri3 instance_; - Tri3(const Tri3 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tri4.h b/Ioss_Tri4.h index 408c3579068c..1917a4520d2f 100644 --- a/Ioss_Tri4.h +++ b/Ioss_Tri4.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -50,8 +51,6 @@ namespace Ioss { Tri4(); private: - static Tri4 instance_; - Tri4(const Tri4 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tri4a.h b/Ioss_Tri4a.h index 573a179e4651..11332ed4faa3 100644 --- a/Ioss_Tri4a.h +++ b/Ioss_Tri4a.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -52,8 +53,6 @@ namespace Ioss { Tri4a(); private: - static Tri4a instance_; - Tri4a(const Tri4a &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tri6.h b/Ioss_Tri6.h index d05c5bf6f619..856c13aeba2a 100644 --- a/Ioss_Tri6.h +++ b/Ioss_Tri6.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -50,8 +51,6 @@ namespace Ioss { Tri6(); private: - static Tri6 instance_; - Tri6(const Tri6 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tri7.h b/Ioss_Tri7.h index bdd5d3d1c7b7..ec9580092862 100644 --- a/Ioss_Tri7.h +++ b/Ioss_Tri7.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -50,8 +51,6 @@ namespace Ioss { Tri7(); private: - static Tri7 instance_; - Tri7(const Tri7 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Tri9.h b/Ioss_Tri9.h index b97426fdfb5d..4686e9edd667 100644 --- a/Ioss_Tri9.h +++ b/Ioss_Tri9.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -50,8 +51,6 @@ namespace Ioss { Tri9(); private: - static Tri9 instance_; - Tri9(const Tri9 &) = delete; }; } // namespace Ioss diff --git a/Ioss_TriShell3.h b/Ioss_TriShell3.h index b95192a1f04f..6d40d26e7d95 100644 --- a/Ioss_TriShell3.h +++ b/Ioss_TriShell3.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return true; } int order() const override; int number_corner_nodes() const override; @@ -52,8 +53,6 @@ namespace Ioss { TriShell3(); private: - static TriShell3 instance_; - TriShell3(const TriShell3 &) = delete; }; } // namespace Ioss diff --git a/Ioss_TriShell4.h b/Ioss_TriShell4.h index 5253c645274e..cb19c66acde2 100644 --- a/Ioss_TriShell4.h +++ b/Ioss_TriShell4.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return true; } int order() const override; int number_corner_nodes() const override; @@ -52,8 +53,6 @@ namespace Ioss { TriShell4(); private: - static TriShell4 instance_; - TriShell4(const TriShell4 &) = delete; }; } // namespace Ioss diff --git a/Ioss_TriShell6.h b/Ioss_TriShell6.h index be10bf32c26c..6d903f228bbf 100644 --- a/Ioss_TriShell6.h +++ b/Ioss_TriShell6.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return true; } int order() const override; int number_corner_nodes() const override; @@ -50,8 +51,6 @@ namespace Ioss { TriShell6(); private: - static TriShell6 instance_; - TriShell6(const TriShell6 &) = delete; }; } // namespace Ioss diff --git a/Ioss_TriShell7.h b/Ioss_TriShell7.h index 59f26900b1bc..5bc0c0585fd3 100644 --- a/Ioss_TriShell7.h +++ b/Ioss_TriShell7.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return true; } int order() const override; int number_corner_nodes() const override; @@ -50,8 +51,6 @@ namespace Ioss { TriShell7(); private: - static TriShell7 instance_; - TriShell7(const TriShell7 &) = delete; }; } // namespace Ioss diff --git a/Ioss_Unknown.h b/Ioss_Unknown.h index 3aaf51144d7c..2273c8298459 100644 --- a/Ioss_Unknown.h +++ b/Ioss_Unknown.h @@ -27,6 +27,7 @@ namespace Ioss { ElementShape shape() const override { return ElementShape::UNKNOWN; } int spatial_dimension() const override; int parametric_dimension() const override; + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; @@ -49,8 +50,6 @@ namespace Ioss { Unknown(); private: - static Unknown instance_; - Unknown(const Unknown &) = delete; }; } // namespace Ioss diff --git a/Ioss_Utils.C b/Ioss_Utils.C index 0558d8f362d9..ac2cabe76e91 100644 --- a/Ioss_Utils.C +++ b/Ioss_Utils.C @@ -1056,6 +1056,25 @@ int64_t Ioss::Utils::get_side_offset(const Ioss::SideBlock *sb) return side_offset; } +std::string Ioss::Utils::shape_to_string(const Ioss::ElementShape &shape) +{ + switch (shape) { + case Ioss::ElementShape::UNKNOWN: return std::string("Unknown"); + case Ioss::ElementShape::POINT: return std::string("Point"); + case Ioss::ElementShape::SPHERE: return std::string("Sphere"); + case Ioss::ElementShape::LINE: return std::string("Line"); + case Ioss::ElementShape::SPRING: return std::string("Spring"); + case Ioss::ElementShape::TRI: return std::string("Tri"); + case Ioss::ElementShape::QUAD: return std::string("Quad"); + case Ioss::ElementShape::TET: return std::string("Tet"); + case Ioss::ElementShape::PYRAMID: return std::string("Pyramid"); + case Ioss::ElementShape::WEDGE: return std::string("Wedge"); + case Ioss::ElementShape::HEX: return std::string("Hex"); + case Ioss::ElementShape::SUPER: return std::string("Super"); + } + return std::string("Invalid shape [") + std::to_string(unsigned(shape)) + std::string("]"); +} + unsigned int Ioss::Utils::hash(const std::string &name) { // Hash function from Aho, Sethi, Ullman "Compilers: Principles, @@ -1126,6 +1145,12 @@ bool Ioss::Utils::substr_equal(const std::string &prefix, const std::string &str return (str.size() >= prefix.size()) && str_equal(prefix, str.substr(0, prefix.size())); } +std::string Ioss::Utils::capitalize(std::string name) +{ + name[0] = std::toupper(name[0]); + return name; +} + std::string Ioss::Utils::uppercase(std::string name) { std::transform(name.begin(), name.end(), name.begin(), diff --git a/Ioss_Utils.h b/Ioss_Utils.h index c2411ccfd5d8..c933f14a6f44 100644 --- a/Ioss_Utils.h +++ b/Ioss_Utils.h @@ -9,6 +9,7 @@ #include "vtk_ioss_mangle.h" #include +#include #include #include #include @@ -196,7 +197,7 @@ namespace Ioss { template static void copy_string(char (&output)[size], const char *source) { - // Copy the string — don’t copy too many bytes. + // Copy the string don't copy too many bytes. copy_string(output, source, size); } @@ -359,6 +360,13 @@ namespace Ioss { */ static std::string fixup_type(const std::string &base, int nodes_per_element, int spatial); + /** \brief Uppercase the first letter of the string + * + * \param[in] name The string to convert. + * \returns The converted string. + */ + static std::string capitalize(std::string name); + /** \brief Convert a string to upper case. * * \param[in] name The string to convert. @@ -488,6 +496,8 @@ namespace Ioss { static std::string variable_name_kluge(const std::string &name, size_t component_count, size_t copies, size_t max_var_len); + static std::string shape_to_string(const Ioss::ElementShape &shape); + /** \brief Create a nominal mesh for use in history databases. * * The model for a history file is a single sphere element (1 node, 1 element). diff --git a/Ioss_Version.h b/Ioss_Version.h index abfea4af5ee8..68636e1c4735 100644 --- a/Ioss_Version.h +++ b/Ioss_Version.h @@ -9,5 +9,5 @@ #include "vtk_ioss_mangle.h" namespace Ioss { - inline const char *Version() { return "2021-10-12"; } + inline const char *Version() { return "2022-03-15"; } } // namespace Ioss diff --git a/Ioss_Wedge12.h b/Ioss_Wedge12.h index 7143b3cc69d8..02a1b7c278db 100644 --- a/Ioss_Wedge12.h +++ b/Ioss_Wedge12.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Wedge15.h b/Ioss_Wedge15.h index 0edd292354c3..ca24846954bb 100644 --- a/Ioss_Wedge15.h +++ b/Ioss_Wedge15.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Wedge16.h b/Ioss_Wedge16.h index 2a94572dae52..b67da707d450 100644 --- a/Ioss_Wedge16.h +++ b/Ioss_Wedge16.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Wedge18.h b/Ioss_Wedge18.h index 18d11b7dc4d5..73d3b9acedaa 100644 --- a/Ioss_Wedge18.h +++ b/Ioss_Wedge18.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Wedge20.h b/Ioss_Wedge20.h index ecf32e9a67ba..d4f5493205bb 100644 --- a/Ioss_Wedge20.h +++ b/Ioss_Wedge20.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Wedge21.h b/Ioss_Wedge21.h index 6fc975749af1..267c09fa3fe8 100644 --- a/Ioss_Wedge21.h +++ b/Ioss_Wedge21.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Wedge24.h b/Ioss_Wedge24.h index a3f6f6cebb35..86d35af1a40a 100644 --- a/Ioss_Wedge24.h +++ b/Ioss_Wedge24.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Wedge52.h b/Ioss_Wedge52.h index dcd56447973f..a7cec40808bd 100644 --- a/Ioss_Wedge52.h +++ b/Ioss_Wedge52.h @@ -28,6 +28,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; int number_corner_nodes() const override; diff --git a/Ioss_Wedge6.h b/Ioss_Wedge6.h index 5259b231fbaf..7c1de43c38d8 100644 --- a/Ioss_Wedge6.h +++ b/Ioss_Wedge6.h @@ -27,6 +27,7 @@ namespace Ioss { int spatial_dimension() const override; int parametric_dimension() const override; bool is_element() const override { return true; } + bool is_shell() const override { return false; } int order() const override; ElementShape shape() const override { return ElementShape::WEDGE; } diff --git a/cgns/Iocgns_DatabaseIO.C b/cgns/Iocgns_DatabaseIO.C index 7514f584bf1c..e4bc3c8ff1e0 100644 --- a/cgns/Iocgns_DatabaseIO.C +++ b/cgns/Iocgns_DatabaseIO.C @@ -1573,9 +1573,10 @@ namespace Iocgns { int cell_dimension = 0; int phys_dimension = 0; CGCHECKM(cg_base_read(get_file_pointer(), base, basename, &cell_dimension, &phys_dimension)); - if (phys_dimension != 3) { + if (phys_dimension != 3 && mesh_type == Ioss::MeshType::STRUCTURED) { std::ostringstream errmsg; - fmt::print(errmsg, "ERROR: The model is {}D. Only 3D models are supported.", phys_dimension); + fmt::print(errmsg, "ERROR: The model is {}D. Only 3D structured models are supported.", + phys_dimension); IOSS_ERROR(errmsg); } @@ -2721,8 +2722,10 @@ namespace Iocgns { int field_byte_size = (field.get_type() == Ioss::Field::INT32) ? 32 : 64; if (field_byte_size == CG_SIZEOF_SIZE) { Utils::unmap_cgns_connectivity(eb->topology(), num_to_get, (cgsize_t *)data); - CGCHECKM(cg_section_write(get_file_pointer(), base, zone, "HexElements", type, 1, - num_to_get, 0, (cgsize_t *)data, §)); + std::string element_type = + fmt::format("{}Elements", Ioss::Utils::shape_to_string(eb->topology()->shape())); + CGCHECKM(cg_section_write(get_file_pointer(), base, zone, element_type.c_str(), type, + 1, num_to_get, 0, (cgsize_t *)data, §)); } else { CGNSIntVector connect; @@ -2740,8 +2743,10 @@ namespace Iocgns { } } Utils::unmap_cgns_connectivity(eb->topology(), num_to_get, connect.data()); - CGCHECKM(cg_section_write(get_file_pointer(), base, zone, "HexElements", type, 1, - num_to_get, 0, connect.data(), §)); + std::string element_type = + fmt::format("{}Elements", Ioss::Utils::shape_to_string(eb->topology()->shape())); + CGCHECKM(cg_section_write(get_file_pointer(), base, zone, element_type.c_str(), type, + 1, num_to_get, 0, connect.data(), §)); } m_bcOffset[zone] += num_to_get; eb->property_update("section", sect); @@ -3097,8 +3102,10 @@ namespace Iocgns { CGCHECKM( cg_goto(get_file_pointer(), base, "Zone_t", zone, "ZoneBC_t", 1, "BC_t", sect, "end")); CGCHECKM(cg_famname_write(name.c_str())); - CGCHECKM(cg_boco_gridlocation_write(get_file_pointer(), base, zone, sect, - CGNS_ENUMV(FaceCenter))); + + int phys_dimension = get_region()->get_property("spatial_dimension").get_int(); + auto location = phys_dimension == 2 ? CGNS_ENUMV(EdgeCenter) : CGNS_ENUMV(FaceCenter); + CGCHECKM(cg_boco_gridlocation_write(get_file_pointer(), base, zone, sect, location)); CGCHECKM(cg_section_partial_write(get_file_pointer(), base, zone, sb_name.c_str(), type, cg_start, cg_end, 0, §)); diff --git a/cgns/Iocgns_ParallelDatabaseIO.C b/cgns/Iocgns_ParallelDatabaseIO.C index 42200d2b7551..c2df1b6ed738 100644 --- a/cgns/Iocgns_ParallelDatabaseIO.C +++ b/cgns/Iocgns_ParallelDatabaseIO.C @@ -2068,8 +2068,10 @@ namespace Iocgns { if (size[1] > 0) { CGNS_ENUMT(ElementType_t) type = Utils::map_topology_to_cgns(eb->topology()->name()); - int sect = 0; - CGCHECKM(cgp_section_write(get_file_pointer(), base, zone, "HexElements", type, 1, + int sect = 0; + std::string element_type = + fmt::format("{}Elements", Ioss::Utils::shape_to_string(eb->topology()->shape())); + CGCHECKM(cgp_section_write(get_file_pointer(), base, zone, element_type.c_str(), type, 1, size[1], 0, §)); int64_t start = 0; @@ -2434,8 +2436,10 @@ namespace Iocgns { CGCHECKM( cg_goto(get_file_pointer(), base, "Zone_t", zone, "ZoneBC_t", 1, "BC_t", sect, "end")); CGCHECKM(cg_famname_write(name.c_str())); - CGCHECKM(cg_boco_gridlocation_write(get_file_pointer(), base, zone, sect, - CGNS_ENUMV(FaceCenter))); + + int phys_dimension = get_region()->get_property("spatial_dimension").get_int(); + auto location = phys_dimension == 2 ? CGNS_ENUMV(EdgeCenter) : CGNS_ENUMV(FaceCenter); + CGCHECKM(cg_boco_gridlocation_write(get_file_pointer(), base, zone, sect, location)); CGCHECKM(cgp_section_write(get_file_pointer(), base, zone, sb_name.c_str(), type, cg_start, cg_end, 0, §)); diff --git a/cgns/Iocgns_Utils.C b/cgns/Iocgns_Utils.C index 81dad65d29ed..3768535aa760 100644 --- a/cgns/Iocgns_Utils.C +++ b/cgns/Iocgns_Utils.C @@ -1631,7 +1631,7 @@ void Iocgns::Utils::add_sidesets(int cgns_file_ptr, Ioss::DatabaseIO *db) } if (id == 0) { id = Ioss::Utils::extract_id(ss_name); - if (id == 0) { + if (id == 0 && ss_name != "Unspecified") { // Assign a fake_id to this sideset. No checking to make // sure there are no duplicates... id = fake_id--; @@ -1691,7 +1691,7 @@ void Iocgns::Utils::add_assemblies(int cgns_file_ptr, Ioss::DatabaseIO *db) } cg_free(dtext); } - if (!assem_name.empty()) { + if (!assem_name.empty() && assem_name != "Unspecified") { // Create an assembly with this name... auto *assem = new Ioss::Assembly(db, assem_name); db->get_region()->add(assem); @@ -2639,14 +2639,12 @@ int Iocgns::Utils::pre_split(std::vector &zones, d int new_zone_id = static_cast(zones.size()) + 1; // See if can split each zone over a set of procs... - double total_work = 0.0; std::vector splits(zones.size()); for (size_t i = 0; i < zones.size(); i++) { auto zone = zones[i]; if (zone->m_lineOrdinal != 7) { double work = zone->work(); - total_work += work; if (load_balance <= 1.2) { splits[i] = int(std::ceil(work / avg_work)); } diff --git a/exodus/Ioex_BaseDatabaseIO.C b/exodus/Ioex_BaseDatabaseIO.C index a8812304da8b..d488007982f0 100644 --- a/exodus/Ioex_BaseDatabaseIO.C +++ b/exodus/Ioex_BaseDatabaseIO.C @@ -145,8 +145,8 @@ namespace { if(!found) { std::ostringstream errmsg; fmt::print(errmsg, - "ERROR: Could not find sub-assembly with id: {} and name: {}" - " [{}]\n", assembly.id, assembly.name); + "ERROR: Could not find sub-assembly with id: {} and name: {}", + assembly.id, assembly.name); IOSS_ERROR(errmsg); } } @@ -442,7 +442,7 @@ namespace Ioex { // Check byte-size of integers stored on the database... if ((ex_int64_status(m_exodusFilePtr) & EX_ALL_INT64_DB) != 0) { if (myProcessor == 0 && !sixty_four_bit_message_output) { - fmt::print(Ioss::OUTPUT(), + fmt::print(Ioss::DEBUG(), "IOSS: Input database contains 8-byte integers. Setting Ioss to use " "8-byte integers.\n"); sixty_four_bit_message_output = true; @@ -646,16 +646,6 @@ namespace Ioex { { Ioss::SerializeIO serializeIO__(this); - if (!assemblyOmissions.empty() && !assemblyInclusions.empty()) { - // Only one can be non-empty - std::ostringstream errmsg; - fmt::print(errmsg, - "ERROR: Only one of assembly omission or inclusion can be non-empty" - " [{}]\n", - get_filename()); - IOSS_ERROR(errmsg); - } - if (!assemblyOmissions.empty()) { assert(blockInclusions.empty()); } @@ -768,17 +758,18 @@ namespace Ioex { for (int j = 0; j < assembly.entity_count; j++) { auto *ge = get_region()->get_entity(assembly.entity_list[j], type); - if (ge != nullptr && !Ioss::Utils::block_is_omitted(ge)) { - assem->add(ge); - num_added_entities++; - } - else { + if (ge == nullptr) { std::ostringstream errmsg; fmt::print(errmsg, - "Error: Failed to find entity of type {} with id {} for Assembly {}.\n", + "Error: Failed to find entity of type {} with id {} for assembly {}.\n", type, assembly.entity_list[j], assem->name()); IOSS_ERROR(errmsg); } + + if (!Ioss::Utils::block_is_omitted(ge)) { + assem->add(ge); + num_added_entities++; + } } SMART_ASSERT(assem->member_count() == num_added_entities) (assem->member_count())(num_added_entities); diff --git a/exodus/Ioex_DatabaseIO.C b/exodus/Ioex_DatabaseIO.C index 59167c0df45c..98de3a2acf70 100644 --- a/exodus/Ioex_DatabaseIO.C +++ b/exodus/Ioex_DatabaseIO.C @@ -649,7 +649,6 @@ namespace Ioex { void DatabaseIO::get_step_times__() { - double t_begin = Ioss::Utils::timer(); bool exists = false; double last_time = DBL_MAX; int timestep_count = 0; @@ -772,9 +771,6 @@ namespace Ioex { } } } - double t_end = Ioss::Utils::timer(); - double duration = t_end - t_begin; - fmt::print(Ioss::DEBUG(), "Get Step Times = {}\n", duration); } void DatabaseIO::read_communication_metadata() @@ -1388,7 +1384,6 @@ namespace Ioex { { // Check whether we already populated the element/sides vectors. if (element.empty() && sides.empty() && number_sides > 0) { - fmt::print("IOSS DEBUG: Reading data for {} element/sides\n", number_sides); element.resize(number_sides); sides.resize(number_sides); // Easier below here if the element and sides are a known 64-bit size... diff --git a/exodus/Ioex_ParallelDatabaseIO.C b/exodus/Ioex_ParallelDatabaseIO.C index 26195b48d0e1..3c30dd36d068 100644 --- a/exodus/Ioex_ParallelDatabaseIO.C +++ b/exodus/Ioex_ParallelDatabaseIO.C @@ -1302,7 +1302,6 @@ namespace Ioex { { // Check whether we already populated the element/sides vectors. if (element.empty() && sides.empty() && number_sides > 0) { - fmt::print("IOSS DEBUG: Reading data for {} element/sides\n", number_sides); element.resize(number_sides); sides.resize(number_sides); diff --git a/init/Ionit_Initializer.C b/init/Ionit_Initializer.C index cfd629c04d68..2510ad824880 100644 --- a/init/Ionit_Initializer.C +++ b/init/Ionit_Initializer.C @@ -14,7 +14,8 @@ #include #include #include -#include +// xxx(kitware) +// #include #ifdef HAVE_SEACASIOSS_ADIOS2 #include @@ -85,7 +86,8 @@ namespace Ioss { #endif Iohb::IOFactory::factory(); // HeartBeat Iogn::IOFactory::factory(); // Generated - Iotm::IOFactory::factory(); // TextMesh + // xxx(kitware) + // Iotm::IOFactory::factory(); // TextMesh Iogs::IOFactory::factory(); // Structured Mesh Generator Ioss::StorageInitializer(); Ioss::Initializer(); diff --git a/robin_hash.h b/robin_hash.h index e25850e564cc..9d5737106ad6 100644 --- a/robin_hash.h +++ b/robin_hash.h @@ -176,7 +176,8 @@ namespace tsl { using distance_type = std::int16_t; bucket_entry() noexcept - : bucket_hash(), m_dist_from_ideal_bucket(EMPTY_MARKER_DIST_FROM_IDEAL_BUCKET) + : bucket_hash(), m_dist_from_ideal_bucket(EMPTY_MARKER_DIST_FROM_IDEAL_BUCKET), + m_last_bucket(false) { tsl_rh_assert(empty()); } @@ -327,7 +328,7 @@ namespace tsl { using storage = typename std::aligned_storage::type; distance_type m_dist_from_ideal_bucket; - bool m_last_bucket{false}; + bool m_last_bucket; storage m_value; }; @@ -415,8 +416,8 @@ namespace tsl { return true; } else if (STORE_HASH && is_power_of_two_policy::value) { - tsl_rh_assert(bucket_count > 0); - return (bucket_count - 1) <= std::numeric_limits::max(); + return bucket_count == 0 || + (bucket_count - 1) <= std::numeric_limits::max(); } else { TSL_RH_UNUSED(bucket_count); diff --git a/text_mesh/Iotm_DatabaseIO.C b/text_mesh/Iotm_DatabaseIO.C deleted file mode 100644 index 6e3de9c64ac9..000000000000 --- a/text_mesh/Iotm_DatabaseIO.C +++ /dev/null @@ -1,941 +0,0 @@ -// Copyright(C) 1999-2020, 2022 National Technology & Engineering Solutions -// of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with -// NTESS, the U.S. Government retains certain rights in this software. -// -// See packages/seacas/LICENSE for details - -#include "Iotm_DatabaseIO.h" - -#include // for Int64Vector, IntVector -#include // for SideBlock -#include -#include // for Utils, IOSS_ERROR - -#include "vtk_fmt.h" -#include VTK_FMT(fmt/ostream.h) - -#include // for copy -#include // for assert -#include // for sqrt -#include // for ostringstream -#include // for string, operator==, etc -#include // for pair - -#include "Ioss_Assembly.h" // for Assembly -#include "Ioss_CommSet.h" // for CommSet -#include "Ioss_DBUsage.h" // for DatabaseUsage -#include "Ioss_DatabaseIO.h" // for DatabaseIO -#include "Ioss_ElementBlock.h" // for ElementBlock -#include "Ioss_ElementTopology.h" -#include "Ioss_EntityType.h" // for EntityType, etc -#include "Ioss_Field.h" // for Field, etc -#include "Ioss_GroupingEntity.h" // for GroupingEntity -#include "Ioss_Hex8.h" -#include "Ioss_IOFactory.h" // for IOFactory -#include "Ioss_Map.h" // for Map, MapContainer -#include "Ioss_NodeBlock.h" // for NodeBlock -#include "Ioss_NodeSet.h" // for NodeSet -#include "Ioss_ParallelUtils.h" // for ParallelUtils -#include "Ioss_Property.h" // for Property -#include "Ioss_PropertyManager.h" // for PropertyManager -#include "Ioss_Region.h" // for Region -#include "Ioss_SerializeIO.h" -#include "Ioss_SideSet.h" // for SideSet -#include "Ioss_Utils.h" -#include "Ioss_VariableType.h" // for VariableType -#include "Iotm_TextMesh.h" // for TextMesh - -namespace { - template - void map_global_to_local(const Ioss::Map &map, size_t count, size_t stride, INT *data) - { - for (size_t i = 0; i < count; i += stride) { - int64_t local = map.global_to_local(data[i], true); - data[i] = local; - } - } - - template - void fill_transient_data(size_t component_count, double *data, INT *ids, size_t count, - double offset = 0.0) - { - if (component_count == 1) { - for (size_t i = 0; i < count; i++) { - data[i] = std::sqrt((double)ids[i]) + offset; - } - } - else { - for (size_t i = 0; i < count; i++) { - for (size_t j = 0; j < component_count; j++) { - data[i * component_count + j] = j + std::sqrt((double)ids[i]) + offset; - } - } - } - } - - void fill_transient_data(const Ioss::GroupingEntity *entity, const Ioss::Field &field, void *data, - void *id_data, size_t count, double offset = 0.0) - { - const Ioss::Field &ids = entity->get_fieldref("ids"); - if (ids.is_type(Ioss::Field::INTEGER)) { - fill_transient_data(field.raw_storage()->component_count(), reinterpret_cast(data), - reinterpret_cast(id_data), count, offset); - } - else { - fill_transient_data(field.raw_storage()->component_count(), reinterpret_cast(data), - reinterpret_cast(id_data), count, offset); - } - } - - void fill_constant_data(const Ioss::Field &field, void *data, double value) - { - auto *rdata = reinterpret_cast(data); - size_t count = field.raw_count(); - size_t component_count = field.raw_storage()->component_count(); - for (size_t i = 0; i < count * component_count; i++) { - rdata[i] = value; - } - } -} // namespace -namespace Iotm { - // ======================================================================== - const IOFactory *IOFactory::factory() - { - static IOFactory registerThis; - return ®isterThis; - } - - IOFactory::IOFactory() : Ioss::IOFactory("textmesh") {} - - Ioss::DatabaseIO *IOFactory::make_IO(const std::string &filename, Ioss::DatabaseUsage db_usage, - Ioss_MPI_Comm communicator, - const Ioss::PropertyManager &props) const - { - return new DatabaseIO(nullptr, filename, db_usage, communicator, props); - } - - // ======================================================================== - DatabaseIO::DatabaseIO(Ioss::Region *region, const std::string &filename, - Ioss::DatabaseUsage db_usage, Ioss_MPI_Comm communicator, - const Ioss::PropertyManager &props) - : Ioss::DatabaseIO(region, filename, db_usage, communicator, props) - { - if (is_input()) { - dbState = Ioss::STATE_UNKNOWN; - } - else { - std::ostringstream errmsg; - fmt::print(errmsg, "Text mesh option is only valid for input mesh."); - IOSS_ERROR(errmsg); - } - - if (props.exists("USE_CONSTANT_DF")) { - m_useVariableDf = false; - } - } - - DatabaseIO::~DatabaseIO() { delete m_textMesh; } - - void DatabaseIO::read_meta_data__() - { - if (m_textMesh == nullptr) { - if (get_filename() == "external") { - std::ostringstream errmsg; - fmt::print(errmsg, "ERROR: (text mesh) 'external' specified for mesh, but " - "set_text_mesh was not called to set the external mesh.\n"); - IOSS_ERROR(errmsg); - } - else { - m_textMesh = new TextMesh(get_filename(), util().parallel_size(), util().parallel_rank()); - } - } - - assert(m_textMesh != nullptr); - - Ioss::Region *this_region = get_region(); - auto glob_node_count = m_textMesh->node_count(); - auto glob_elem_count = m_textMesh->element_count(); - - this_region->property_add(Ioss::Property("global_node_count", glob_node_count)); - this_region->property_add(Ioss::Property("global_element_count", glob_elem_count)); - - const int64_t two_billion = 2ll << 30; - if ((glob_node_count > two_billion || glob_elem_count > two_billion) && - int_byte_size_api() == 4) { - std::ostringstream errmsg; - fmt::print(errmsg, - "ERROR: The node count is {} and the element count is {}.\n" - " This exceeds the capacity of the 32-bit integers ({})\n" - " which are being requested by the client.\n" - " The mesh requires 64-bit integers which can be requested by setting the " - "`INTEGER_SIZE_API=8` property.", - fmt::group_digits(glob_node_count), fmt::group_digits(glob_elem_count), - fmt::group_digits(two_billion)); - IOSS_ERROR(errmsg); - } - - spatialDimension = m_textMesh->spatial_dimension(); - nodeCount = m_textMesh->node_count_proc(); - elementCount = m_textMesh->element_count_proc(); - elementBlockCount = m_textMesh->block_count(); - nodesetCount = m_textMesh->nodeset_count(); - sidesetCount = m_textMesh->sideset_count(); - assemblyCount = m_textMesh->assembly_count(); - - get_step_times__(); - - add_transient_fields(this_region); - get_nodeblocks(); - get_elemblocks(); - get_nodesets(); - get_sidesets(); - get_commsets(); - get_assemblies(); - - this_region->property_add( - Ioss::Property(std::string("title"), std::string("TextMesh: ") += get_filename())); - } - - bool DatabaseIO::begin__(Ioss::State /* state */) { return true; } - - bool DatabaseIO::end__(Ioss::State /* state */) { return true; } - - bool DatabaseIO::begin_state__(int /* state */, double time) - { - currentTime = time; - return true; - } - - int64_t DatabaseIO::get_field_internal(const Ioss::NodeBlock *nb, const Ioss::Field &field, - void *data, size_t data_size) const - { - size_t num_to_get = field.verify(data_size); - - Ioss::Field::RoleType role = field.get_role(); - if (role == Ioss::Field::MESH) { - if (field.get_name() == "mesh_model_coordinates") { - // Cast 'data' to correct size -- double - auto *rdata = static_cast(data); - m_textMesh->coordinates(rdata); - } - else if (field.get_name() == "mesh_model_coordinates_x") { - // Cast 'data' to correct size -- double - auto *rdata = static_cast(data); - m_textMesh->coordinates(1, rdata); - } - else if (field.get_name() == "mesh_model_coordinates_y") { - // Cast 'data' to correct size -- double - auto *rdata = static_cast(data); - m_textMesh->coordinates(2, rdata); - } - else if (field.get_name() == "mesh_model_coordinates_z") { - // Cast 'data' to correct size -- double - auto *rdata = static_cast(data); - m_textMesh->coordinates(3, rdata); - } - - // NOTE: The implicit_ids field is ONLY provided for backward- - // compatibility and should not be used unless absolutely - // required. For text mesh, the implicit_ids and ids are the same. - else if (field.get_name() == "ids" || field.get_name() == "implicit_ids") { - // Map the local ids in this node block - // (1...node_count) to global node ids. - get_node_map().map_implicit_data(data, field, num_to_get, 0); - } - else if (field.get_name() == "owning_processor") { - int *owner = static_cast(data); - m_textMesh->owning_processor(owner, num_to_get); - } - else if (field.get_name() == "connectivity") { - // Do nothing, just handles an idiosyncrasy of the GroupingEntity - } - else if (field.get_name() == "connectivity_raw") { - // Do nothing, just handles an idiosyncrasy of the GroupingEntity - } - else { - num_to_get = Ioss::Utils::field_warning(nb, field, "input"); - } - return num_to_get; - } - - const Ioss::Field &id_fld = nb->get_fieldref("ids"); - std::vector ids(id_fld.get_size()); - get_field_internal(nb, id_fld, ids.data(), id_fld.get_size()); - fill_transient_data(nb, field, data, ids.data(), num_to_get, currentTime); - - return num_to_get; - } - - int64_t DatabaseIO::get_field_internal(const Ioss::Region * /*region*/, const Ioss::Field &field, - void *data, size_t /*data_size*/) const - { - Ioss::Field::RoleType role = field.get_role(); - if (role == Ioss::Field::TRANSIENT) { - // Fill the field with arbitrary data... - (reinterpret_cast(data))[0] = static_cast(rand()); - } - return 1; - } - - int64_t DatabaseIO::get_field_internal(const Ioss::ElementBlock *eb, const Ioss::Field &field, - void *data, size_t data_size) const - { - size_t num_to_get = field.verify(data_size); - - int64_t id = eb->get_property("id").get_int(); - int64_t element_count = eb->entity_count(); - Ioss::Field::RoleType role = field.get_role(); - - if (role == Ioss::Field::MESH) { - // Handle the MESH fields required for an ExodusII file model. - // (The 'genesis' portion) - - if (field.get_name() == "connectivity" || field.get_name() == "connectivity_raw") { - assert(field.raw_storage()->component_count() == m_textMesh->topology_type(id).second); - - // The text mesh connectivity is returned in a vector. Ids are global - if (field.is_type(Ioss::Field::INTEGER)) { - int *connect = static_cast(data); - m_textMesh->connectivity(id, connect); - if (field.get_name() == "connectivity_raw") { - map_global_to_local(get_node_map(), - element_count * field.raw_storage()->component_count(), 1, connect); - } - } - else { - auto *connect = static_cast(data); - m_textMesh->connectivity(id, connect); - if (field.get_name() == "connectivity_raw") { - map_global_to_local(get_node_map(), - element_count * field.raw_storage()->component_count(), 1, connect); - } - } - } - else if (field.get_name() == "ids" || field.get_name() == "implicit_ids") { - // Map the local ids in this element block - // (eb_offset+1...eb_offset+1+element_count) to global element ids. - get_element_map().map_implicit_data(data, field, num_to_get, eb->get_offset()); - } - else { - num_to_get = Ioss::Utils::field_warning(eb, field, "input"); - } - } - - else if (role == Ioss::Field::ATTRIBUTE) { - if (element_count > 0) { - int attribute_count = eb->get_property("attribute_count").get_int(); - if (attribute_count > 0) { - auto *attr = static_cast(data); - for (size_t i = 0; i < num_to_get; i++) { - attr[i] = 1.0; - } - } - } - } - - else if (role == Ioss::Field::TRANSIENT) { - // Fill the field with arbitrary data... - const Ioss::Field &id_fld = eb->get_fieldref("ids"); - std::vector ids(id_fld.get_size()); - get_field_internal(eb, id_fld, ids.data(), id_fld.get_size()); - fill_transient_data(eb, field, data, ids.data(), num_to_get, currentTime); - } - else if (role == Ioss::Field::REDUCTION) { - num_to_get = Ioss::Utils::field_warning(eb, field, "input reduction"); - } - return num_to_get; - } - - int64_t DatabaseIO::get_field_internal(const Ioss::SideBlock *ef_blk, const Ioss::Field &field, - void *data, size_t data_size) const - { - size_t num_to_get = field.verify(data_size); - - int64_t id = ef_blk->get_property("id").get_int(); - size_t entity_count = ef_blk->entity_count(); - if (num_to_get != entity_count) { - std::ostringstream errmsg; - fmt::print(errmsg, "Partial field input not implemented for side blocks"); - IOSS_ERROR(errmsg); - } - - Ioss::Field::RoleType role = field.get_role(); - - if (role == Ioss::Field::MESH) { - - if (field.get_name() == "ids") { - // A sideset' is basically an exodus sideset. A - // sideset has a list of elements and a corresponding local - // element side (1-based) The side id is: side_id = - // 10*element_id + local_side_number This assumes that all - // sides in a sideset are boundary sides. - std::vector elem_side; - m_textMesh->sideblock_elem_sides(id, ef_blk->name(), elem_side); - if (field.is_type(Ioss::Field::INTEGER)) { - int *ids = static_cast(data); - for (size_t i = 0; i < num_to_get; i++) { - ids[i] = static_cast(10 * elem_side[2 * i + 0] + elem_side[2 * i + 1]); - } - } - else { - auto *ids = static_cast(data); - for (size_t i = 0; i < num_to_get; i++) { - ids[i] = 10 * elem_side[2 * i + 0] + elem_side[2 * i + 1]; - } - } - } - - else if (field.get_name() == "element_side" || field.get_name() == "element_side_raw") { - // Since we only have a single array, we need to allocate an extra - // array to store all of the data. Note also that the element_id - // is the global id but only the local id is stored so we need to - // map from local_to_global prior to generating the side id... - - std::vector elem_side; - m_textMesh->sideblock_elem_sides(id, ef_blk->name(), elem_side); - if (field.get_name() == "element_side_raw") { - map_global_to_local(get_element_map(), elem_side.size(), 2, &elem_side[0]); - } - - if (field.is_type(Ioss::Field::INTEGER)) { - int *element_side = static_cast(data); - for (size_t i = 0; i < num_to_get; i++) { - element_side[2 * i + 0] = static_cast(elem_side[2 * i + 0]); - element_side[2 * i + 1] = static_cast(elem_side[2 * i + 1]); - } - } - else { - auto *element_side = static_cast(data); - for (size_t i = 0; i < num_to_get; i++) { - element_side[2 * i + 0] = elem_side[2 * i + 0]; - element_side[2 * i + 1] = elem_side[2 * i + 1]; - } - } - } - - else if (field.get_name() == "distribution_factors") { - if (m_useVariableDf) { - const Ioss::Field &id_fld = ef_blk->get_fieldref("ids"); - std::vector ids(id_fld.get_size()); - get_field_internal(ef_blk, id_fld, ids.data(), id_fld.get_size()); - fill_transient_data(ef_blk, field, data, ids.data(), num_to_get); - } - else { - fill_constant_data(field, data, 1.0); - } - } - - else { - num_to_get = Ioss::Utils::field_warning(ef_blk, field, "input"); - } - } - else if (role == Ioss::Field::TRANSIENT) { - const Ioss::Field &id_fld = ef_blk->get_fieldref("ids"); - std::vector ids(id_fld.get_size()); - get_field_internal(ef_blk, id_fld, ids.data(), id_fld.get_size()); - fill_transient_data(ef_blk, field, data, ids.data(), num_to_get, currentTime); - } - return num_to_get; - } - - int64_t DatabaseIO::get_field_internal(const Ioss::NodeSet *ns, const Ioss::Field &field, - void *data, size_t data_size) const - { - size_t num_to_get = field.verify(data_size); - - int64_t id = ns->get_property("id").get_int(); - Ioss::Field::RoleType role = field.get_role(); - if (role == Ioss::Field::MESH) { - - if (field.get_name() == "ids" || field.get_name() == "ids_raw") { - std::vector nodes; - m_textMesh->nodeset_nodes(id, nodes); - if (field.get_name() == "ids_raw") { - map_global_to_local(get_node_map(), nodes.size(), 1, &nodes[0]); - } - - if (field.is_type(Ioss::Field::INTEGER)) { - int *ids = static_cast(data); -#ifdef _MSC_VER -#pragma warning(push) -#pragma warning(disable : 4244) -#endif - std::copy(nodes.begin(), nodes.end(), ids); -#ifdef _MSC_VER -#pragma warning(pop) -#endif - } - else { - auto *ids = static_cast(data); - std::copy(nodes.begin(), nodes.end(), ids); - } - } - else if (field.get_name() == "distribution_factors") { - if (m_useVariableDf) { - const Ioss::Field &id_fld = ns->get_fieldref("ids"); - std::vector ids(id_fld.get_size()); - get_field_internal(ns, id_fld, ids.data(), id_fld.get_size()); - fill_transient_data(ns, field, data, ids.data(), num_to_get); - } - else { - fill_constant_data(field, data, 1.0); - } - } - else { - num_to_get = Ioss::Utils::field_warning(ns, field, "input"); - } - } - else if (role == Ioss::Field::TRANSIENT) { - const Ioss::Field &id_fld = ns->get_fieldref("ids"); - std::vector ids(id_fld.get_size()); - get_field_internal(ns, id_fld, ids.data(), id_fld.get_size()); - fill_transient_data(ns, field, data, ids.data(), num_to_get, currentTime); - } - return num_to_get; - } - - int64_t DatabaseIO::get_field_internal(const Ioss::EdgeBlock * /* fs */, - const Ioss::Field & /* field */, void * /* data */, - size_t /* data_size */) const - { - return -1; - } - int64_t DatabaseIO::get_field_internal(const Ioss::FaceBlock * /* fs */, - const Ioss::Field & /* field */, void * /* data */, - size_t /* data_size */) const - { - return -1; - } - int64_t DatabaseIO::get_field_internal(const Ioss::EdgeSet * /* fs */, - const Ioss::Field & /* field */, void * /* data */, - size_t /* data_size */) const - { - return -1; - } - int64_t DatabaseIO::get_field_internal(const Ioss::FaceSet * /* fs */, - const Ioss::Field & /* field */, void * /* data */, - size_t /* data_size */) const - { - return -1; - } - int64_t DatabaseIO::get_field_internal(const Ioss::ElementSet * /* fs */, - const Ioss::Field & /* field */, void * /* data */, - size_t /* data_size */) const - { - return -1; - } - - int64_t DatabaseIO::get_field_internal(const Ioss::SideSet * /* fs */, - const Ioss::Field & /* field */, void * /* data */, - size_t /* data_size */) const - { - return -1; - } - int64_t DatabaseIO::get_field_internal(const Ioss::CommSet *cs, const Ioss::Field &field, - void *data, size_t data_size) const - { - size_t num_to_get = field.verify(data_size); - size_t entity_count = cs->entity_count(); - assert(num_to_get == entity_count); - - // Return the pair - if (field.get_name() == "entity_processor" || field.get_name() == "entity_processor_raw") { - // Check type -- node or face - std::string type = cs->get_property("entity_type").get_string(); - - if (type == "node") { - // Allocate temporary storage space - Ioss::Int64Vector entities(num_to_get); - Ioss::IntVector procs(num_to_get); - m_textMesh->node_communication_map(entities, procs); - - // and store in 'data' ... - if (field.is_type(Ioss::Field::INTEGER)) { - int *entity_proc = static_cast(data); - - size_t j = 0; - for (size_t i = 0; i < entity_count; i++) { - assert(entities[i] > 0); - entity_proc[j++] = entities[i]; - entity_proc[j++] = procs[i]; - } - - if (field.get_name() == "entity_processor_raw") { - map_global_to_local(get_node_map(), 2 * entity_count, 2, entity_proc); - } - } - else { - auto *entity_proc = static_cast(data); - - size_t j = 0; - for (size_t i = 0; i < entity_count; i++) { - assert(entities[i] > 0); - entity_proc[j++] = entities[i]; - entity_proc[j++] = procs[i]; - } - - if (field.get_name() == "entity_processor_raw") { - map_global_to_local(get_node_map(), 2 * entity_count, 2, entity_proc); - } - } - } - else { - std::ostringstream errmsg; - fmt::print(errmsg, "Invalid commset type {}", type); - IOSS_ERROR(errmsg); - } - } - else if (field.get_name() == "ids") { - // Do nothing, just handles an idiosyncrasy of the GroupingEntity - } - else { - num_to_get = Ioss::Utils::field_warning(cs, field, "input"); - } - return num_to_get; - } - - int64_t DatabaseIO::get_field_internal(const Ioss::Assembly *assembly, const Ioss::Field &field, - void *data, size_t data_size) const - { - { - Ioss::SerializeIO serializeIO__(this); - - size_t num_to_get = field.verify(data_size); - if (num_to_get > 0) { - - Ioss::Field::RoleType role = field.get_role(); - if (role == Ioss::Field::MESH) { - if (field.get_name() == "ids") { - // Map the local ids in this node block - // (1...node_count) to global node ids. - // get_map(EX_ASSEMBLY).map_implicit_data(data, field, num_to_get, 0); - } - - else if (field.get_name() == "connectivity") { - // Do nothing, just handles an idiosyncrasy of the GroupingEntity - } - else if (field.get_name() == "connectivity_raw") { - // Do nothing, just handles an idiosyncrasy of the GroupingEntity - } - else { - num_to_get = Ioss::Utils::field_warning(assembly, field, "input"); - } - } - else if (role == Ioss::Field::TRANSIENT) { - // Check if the specified field exists on this assembly. - // Note that 'higher-order' storage types (e.g. SYM_TENSOR) - // exist on the database as scalars with the appropriate - // extensions. - - // Read in each component of the variable and transfer into - // 'data'. Need temporary storage area of size 'number of - // items in this assembly. - // num_to_get = - // read_transient_field(EX_ASSEMBLY, m_variables[EX_ASSEMBLY], field, assembly, data); - } - else if (role == Ioss::Field::REDUCTION) { - // get_reduction_field(EX_ASSEMBLY, field, assembly, data); - } - else if (role == Ioss::Field::ATTRIBUTE) { - // num_to_get = read_attribute_field(EX_ASSEMBLY, field, assembly, data); - } - } - return num_to_get; - } - } - - // Input only database -- these will never be called... - int64_t DatabaseIO::put_field_internal(const Ioss::Region * /*reg*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::ElementBlock * /*eb*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::FaceBlock * /*nb*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::EdgeBlock * /*nb*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::NodeBlock * /*nb*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::ElementSet * /*ns*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::FaceSet * /*ns*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::EdgeSet * /*ns*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::NodeSet * /*ns*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::SideSet * /*fs*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::SideBlock * /*fb*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - int64_t DatabaseIO::put_field_internal(const Ioss::CommSet * /*cs*/, - const Ioss::Field & /*field*/, void * /*data*/, - size_t /*data_size*/) const - { - return -1; - } - - const Ioss::Map &DatabaseIO::get_node_map() const - { - // Allocate space for node number map and read it in... - // Can be called multiple times, allocate 1 time only - if (nodeMap.map().empty()) { - nodeMap.set_size(nodeCount); - std::vector map; - m_textMesh->node_map(map); - nodeMap.set_map(map.data(), map.size(), 0, true); - } - return nodeMap; - } - - const Ioss::Map &DatabaseIO::get_element_map() const - { - // Allocate space for element number map and read it in... - // Can be called multiple times, allocate 1 time only - if (elemMap.map().empty()) { - elemMap.set_size(elementCount); - std::vector map; - m_textMesh->element_map(map); - elemMap.set_map(map.data(), map.size(), 0, true); - } - return elemMap; - } - - void DatabaseIO::get_nodeblocks() - { - std::string block_name = "nodeblock_1"; - auto block = - new Ioss::NodeBlock(this, block_name, m_textMesh->node_count_proc(), spatialDimension); - block->property_add(Ioss::Property("id", 1)); - block->property_add(Ioss::Property("guid", util().generate_guid(1))); - get_region()->add(block); - add_transient_fields(block); - } - - void DatabaseIO::get_step_times__() - { - int time_step_count = m_textMesh->timestep_count(); - for (int i = 0; i < time_step_count; i++) { - get_region()->add_state(i); - } - } - - void DatabaseIO::get_elemblocks() - { - // Attributes of an element block are: - // -- id - // -- name - // -- element type - // -- number of elements - // -- number of attributes per element - // -- number of nodes per element (derivable from type) - // -- number of faces per element (derivable from type) - // -- number of edges per element (derivable from type) - - std::vector blockNames = m_textMesh->get_part_names(); - int order = 0; - - for (const std::string &name : blockNames) { - int64_t id = m_textMesh->get_part_id(name); - std::string type = m_textMesh->topology_type(id).first; - size_t element_count = m_textMesh->element_count_proc(id); - auto block = new Ioss::ElementBlock(this, name, type, element_count); - - block->property_add(Ioss::Property("id", id)); - block->property_add(Ioss::Property("guid", util().generate_guid(id))); - block->property_add(Ioss::Property("original_block_order", order)); - - block->property_add(Ioss::Property("global_entity_count", m_textMesh->element_count(id))); - - get_region()->add(block); - add_transient_fields(block); - - order++; - } - } - - void DatabaseIO::get_nodesets() - { - // Attributes of a nodeset are: - // -- id - // -- name - // -- number of nodes - // -- number of distribution factors (see next comment) - // ----the #distribution factors should equal #nodes or 0, any - // other value does not make sense. If it is 0, then a substitute - // list will be created returning 1.0 for the factor - - // In a parallel execution, it is possible that a nodeset will have - // no nodes or distribution factors on a particular processor... - - // Get nodeset metadata - std::vector nodesetNames = m_textMesh->get_nodeset_names(); - for (const std::string &name : nodesetNames) { - int64_t id = m_textMesh->get_nodeset_id(name); - int64_t number_nodes = m_textMesh->nodeset_node_count_proc(id); - - auto nodeset = new Ioss::NodeSet(this, name, number_nodes); - nodeset->property_add(Ioss::Property("id", id)); - nodeset->property_add(Ioss::Property("guid", util().generate_guid(id))); - get_region()->add(nodeset); - add_transient_fields(nodeset); - } - } - - void DatabaseIO::get_sidesets() - { - std::vector sidesetNames = m_textMesh->get_sideset_names(); - for (const std::string &name : sidesetNames) { - int64_t id = m_textMesh->get_sideset_id(name); - auto sideset = new Ioss::SideSet(this, name); - sideset->property_add(Ioss::Property("id", id)); - sideset->property_add(Ioss::Property("guid", util().generate_guid(id))); - get_region()->add(sideset); - - get_region()->add_alias(name, Ioss::Utils::encode_entity_name("sideset", id), Ioss::SIDESET); - - std::vector infoVec = m_textMesh->get_side_block_info_for_sideset(name); - - for (const SideBlockInfo &info : infoVec) { - size_t sideCount = m_textMesh->get_local_side_block_indices(name, info).size(); - auto sideblock = new Ioss::SideBlock(this, info.name, info.sideTopology, - info.elementTopology, sideCount); - sideset->add(sideblock); - - // Note that all sideblocks within a specific - // sideset might have the same id. - assert(sideblock != nullptr); - sideblock->property_add(Ioss::Property("id", id)); - sideblock->property_add(Ioss::Property("guid", util().generate_guid(id))); - - // If splitting by element block, need to set the - // element block member on this side block. - auto split_type = m_textMesh->get_sideset_split_type(name); - if (split_type == text_mesh::SplitType::ELEMENT_BLOCK) { - Ioss::ElementBlock *block = get_region()->get_element_block(info.touchingBlock); - sideblock->set_parent_element_block(block); - } - - if (split_type != text_mesh::SplitType::NO_SPLIT) { - std::string storage = "Real["; - storage += std::to_string(info.numNodesPerSide); - storage += "]"; - sideblock->field_add( - Ioss::Field("distribution_factors", Ioss::Field::REAL, storage, Ioss::Field::MESH)); - } - - add_transient_fields(sideblock); - } - } - } - - void DatabaseIO::get_commsets() - { - if (util().parallel_size() > 1) { - // Get size of communication map... - size_t my_node_count = m_textMesh->communication_node_count_proc(); - - // Create a single node commset - auto *commset = new Ioss::CommSet(this, "commset_node", "node", my_node_count); - commset->property_add(Ioss::Property("id", 1)); - commset->property_add(Ioss::Property("guid", util().generate_guid(1))); - get_region()->add(commset); - } - } - - void DatabaseIO::get_assemblies() - { - // Get assembly metadata - std::vector assemblyNames = m_textMesh->get_assembly_names(); - for (const std::string &name : assemblyNames) { - int64_t id = m_textMesh->get_assembly_id(name); - - auto assembly = new Ioss::Assembly(this, name); - assembly->property_add(Ioss::Property("id", id)); - assembly->property_add(Ioss::Property("guid", util().generate_guid(id))); - get_region()->add(assembly); - } - - // Now iterate again and populate member lists... - for (const std::string &name : assemblyNames) { - Ioss::Assembly *assem = get_region()->get_assembly(name); - assert(assem != nullptr); - Ioss::EntityType type = m_textMesh->get_assembly_type(name); - const std::vector members = m_textMesh->get_assembly_members(name); - - for (size_t j = 0; j < members.size(); j++) { - auto *ge = get_region()->get_entity(members[j], type); - if (ge != nullptr) { - assem->add(ge); - } - else { - std::ostringstream errmsg; - fmt::print(errmsg, - "Error: Failed to find entity of type {} with name {} for Assembly {}.\n", - type, members[j], assem->name()); - IOSS_ERROR(errmsg); - } - } - SMART_ASSERT(assem->member_count() == members.size())(assem->member_count())(members.size()); - } - } - - unsigned DatabaseIO::entity_field_support() const - { - return Ioss::NODEBLOCK | Ioss::ELEMENTBLOCK | Ioss::REGION | Ioss::NODESET | Ioss::SIDESET | - Ioss::ASSEMBLY; - } - - void DatabaseIO::add_transient_fields(Ioss::GroupingEntity *entity) - { - Ioss::EntityType type = entity->type(); - size_t var_count = m_textMesh->get_variable_count(type); - for (size_t i = 0; i < var_count; i++) { - std::string var_name = entity->type_string() + "_" + std::to_string(i + 1); - entity->field_add(Ioss::Field(var_name, Ioss::Field::REAL, "scalar", Ioss::Field::TRANSIENT)); - } - } -} // namespace Iotm diff --git a/text_mesh/Iotm_DatabaseIO.h b/text_mesh/Iotm_DatabaseIO.h deleted file mode 100644 index 88f2a8014aa3..000000000000 --- a/text_mesh/Iotm_DatabaseIO.h +++ /dev/null @@ -1,202 +0,0 @@ -// Copyright(C) 1999-2020, 2022 National Technology & Engineering Solutions -// of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with -// NTESS, the U.S. Government retains certain rights in this software. -// -// See packages/seacas/LICENSE for details - -#pragma once - -#include -#include // for DatabaseUsage -#include // for DatabaseIO -#include // for IOFactory -#include // for Map - -#include // for size_t -#include // for int64_t -#include // for string -#include // for vector - -#include "Ioss_State.h" // for State - -namespace Iotm { - class TextMesh; -} // namespace Iotm -namespace Ioss { - class CommSet; - class EdgeBlock; - class EdgeSet; - class ElementBlock; - class ElementSet; - class FaceBlock; - class FaceSet; - class Field; - class GroupingEntity; - class NodeBlock; - class NodeSet; - class PropertyManager; - class Region; - class SideBlock; - class SideSet; - class StructuredBlock; -} // namespace Ioss - -namespace Ioss { - class EntityBlock; -} // namespace Ioss - -/** \brief A namespace for the generated database format. - */ -namespace Iotm { - class IOFactory : public Ioss::IOFactory - { - public: - static const IOFactory *factory(); - - private: - IOFactory(); - Ioss::DatabaseIO *make_IO(const std::string &filename, Ioss::DatabaseUsage db_usage, - Ioss_MPI_Comm communicator, - const Ioss::PropertyManager &props) const override; - }; - - class DatabaseIO : public Ioss::DatabaseIO - { - public: - DatabaseIO(Ioss::Region *region, const std::string &filename, Ioss::DatabaseUsage db_usage, - Ioss_MPI_Comm communicator, const Ioss::PropertyManager &props); - DatabaseIO(const DatabaseIO &from) = delete; - DatabaseIO &operator=(const DatabaseIO &from) = delete; - - ~DatabaseIO() override; - - const std::string get_format() const override { return "TextMesh"; } - - // Check capabilities of input/output database... Returns an - // unsigned int with the supported Ioss::EntityTypes or'ed - // together. If "return_value & Ioss::EntityType" is set, then the - // database supports that type (e.g. return_value & Ioss::FACESET) - unsigned entity_field_support() const override; - - int int_byte_size_db() const override { return int_byte_size_api(); } - - const TextMesh *get_text_mesh() const { return m_textMesh; } - - void set_text_mesh(Iotm::TextMesh *textMesh) { m_textMesh = textMesh; } - - private: - void read_meta_data__() override; - - bool begin__(Ioss::State state) override; - bool end__(Ioss::State state) override; - - bool begin_state__(int state, double time) override; - - void get_step_times__() override; - void get_nodeblocks(); - void get_elemblocks(); - void get_nodesets(); - void get_sidesets(); - void get_commsets(); - void get_assemblies(); - - const Ioss::Map &get_node_map() const; - const Ioss::Map &get_element_map() const; - - int64_t get_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::StructuredBlock * /* sb */, - const Ioss::Field & /* field */, void * /* data */, - size_t /* data_size */) const override - { - return -1; - } - int64_t get_field_internal(const Ioss::SideBlock *ef_blk, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::NodeSet *ns, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::SideSet *fs, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t get_field_internal(const Ioss::CommSet *cs, const Ioss::Field &field, void *data, - size_t data_size) const override; - - int64_t get_field_internal(const Ioss::Assembly *sb, const Ioss::Field &field, void *data, - size_t data_size) const override; - - int64_t get_field_internal(const Ioss::Blob * /*sb*/, const Ioss::Field & /*field*/, - void * /*data*/, size_t /*data_size*/) const override - { - return 0; - } - - int64_t put_field_internal(const Ioss::Region *reg, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::NodeBlock *nb, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::EdgeBlock *nb, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::FaceBlock *nb, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::ElementBlock *eb, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::SideBlock *fb, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::NodeSet *ns, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::EdgeSet *ns, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::FaceSet *ns, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::ElementSet *ns, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::SideSet *fs, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::CommSet *cs, const Ioss::Field &field, void *data, - size_t data_size) const override; - int64_t put_field_internal(const Ioss::StructuredBlock * /* sb */, - const Ioss::Field & /* field */, void * /* data */, - size_t /* data_size */) const override - { - return -1; - } - int64_t put_field_internal(const Ioss::Assembly * /*sb*/, const Ioss::Field & /*field*/, - void * /*data*/, size_t /*data_size*/) const override - { - return 0; - } - - int64_t put_field_internal(const Ioss::Blob * /*sb*/, const Ioss::Field & /*field*/, - void * /*data*/, size_t /*data_size*/) const override - { - return 0; - } - - void add_transient_fields(Ioss::GroupingEntity *entity); - - TextMesh *m_textMesh{nullptr}; - - double currentTime{0.0}; - int spatialDimension{3}; - - int elementBlockCount{0}; - int nodesetCount{0}; - int sidesetCount{0}; - int assemblyCount{0}; - - bool m_useVariableDf{true}; - }; -} // namespace Iotm diff --git a/text_mesh/Iotm_TextMesh.C b/text_mesh/Iotm_TextMesh.C deleted file mode 100644 index 306bdeb5bd0a..000000000000 --- a/text_mesh/Iotm_TextMesh.C +++ /dev/null @@ -1,853 +0,0 @@ -// Copyright(C) 1999-2021 National Technology & Engineering Solutions -// of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with -// NTESS, the U.S. Government retains certain rights in this software. -// -// See packages/seacas/LICENSE for details - -#include "Iotm_TextMesh.h" - -#include - -#include "vtk_fmt.h" -#include VTK_FMT(fmt/ostream.h) - -#include -#include -#include // for assert -#include // for atan2, cos, sin -#include // for nullptr, exit, etc -#include -#include -#include -#include // for vector - -#define ThrowRequireMsg(expr, message) \ - do { \ - if (!(expr)) { \ - std::ostringstream internal_throw_require_oss; \ - internal_throw_require_oss << message; \ - throw std::logic_error(internal_throw_require_oss.str()); \ - } \ - } while (false) - -namespace Iotm { - void error_handler(const std::ostringstream &message) { throw std::logic_error((message).str()); } - - TextMesh::TextMesh(int proc_count, int my_proc) - : m_processorCount(proc_count), m_myProcessor(my_proc) - { - m_errorHandler = [](const std::ostringstream &errmsg) { error_handler(errmsg); }; - initialize(); - } - - TextMesh::TextMesh(const std::string ¶meters, int proc_count, int my_proc) - : m_processorCount(proc_count), m_myProcessor(my_proc) - { - m_errorHandler = [](const std::ostringstream &errmsg) { error_handler(errmsg); }; - - if (!parameters.empty()) { - TextMeshParser parser; - parser.set_error_handler(m_errorHandler); - m_data = parser.parse(parameters); - }; - - initialize(); - } - - TextMesh::TextMesh() - { - m_errorHandler = [](const std::ostringstream &errmsg) { error_handler(errmsg); }; - initialize(); - } - - unsigned TextMesh::spatial_dimension() const { return m_data.spatialDim; } - - void TextMesh::initialize() - { - build_part_to_topology_map(); - build_block_partition_map(); - build_element_connectivity_map(); - - m_variableCount[Ioss::NODESET] = 0; - m_variableCount[Ioss::SIDESET] = 0; - m_variableCount[Ioss::COMMSET] = 0; - m_variableCount[Ioss::ELEMENTBLOCK] = 0; - m_variableCount[Ioss::INVALID_TYPE] = 0; - m_variableCount[Ioss::NODEBLOCK] = 0; - m_variableCount[Ioss::REGION] = 0; - m_variableCount[Ioss::ASSEMBLY] = 0; - } - - int64_t TextMesh::node_count() const { return m_data.nodeIds.size(); } - - int64_t TextMesh::node_count_proc() const { return m_data.num_nodes_on_proc(m_myProcessor); } - - int64_t TextMesh::block_count() const { return m_data.partIds.size(); } - - int64_t TextMesh::nodeset_count() const { return m_data.nodesets.get_group_data().size(); } - - int64_t TextMesh::nodeset_node_count(int64_t id) const - { - int64_t count = 0; - - const NodesetData *nodeset = m_data.nodesets.get_group_data(id); - if (nullptr != nodeset) { - count = nodeset->data.size(); - } - return count; - } - - int64_t TextMesh::nodeset_node_count_proc(int64_t id) const - { - int64_t count = 0; - - const NodesetData *nodeset = m_data.nodesets.get_group_data(id); - const std::set &myNodes = m_data.nodes_on_proc(m_myProcessor); - - if (nullptr != nodeset) { - for (int64_t nodeId : nodeset->data) { - if (myNodes.count(nodeId) > 0) { - count++; - } - } - } - return count; - } - - int64_t TextMesh::sideset_count() const { return m_data.sidesets.get_group_data().size(); } - - int64_t TextMesh::sideset_side_count(int64_t id) const - { - int64_t count = 0; - - const SidesetData *sideset = m_data.sidesets.get_group_data(id); - if (nullptr != sideset) { - count = sideset->data.size(); - } - return count; - } - - int64_t TextMesh::sideset_side_count_proc(int64_t id) const - { - int64_t count = 0; - - const SidesetData *sideset = m_data.sidesets.get_group_data(id); - int myProc = m_myProcessor; - if (nullptr != sideset) { - for (const std::pair &elemSidePair : sideset->data) { - int64_t elemId = elemSidePair.first; - auto iter = std::find(m_data.elementDataVec.begin(), m_data.elementDataVec.end(), elemId); - if (iter != m_data.elementDataVec.end() && iter->proc == myProc) { - count++; - } - } - } - return count; - } - - int64_t TextMesh::element_count() const { return m_data.elementDataVec.size(); } - - int64_t TextMesh::element_count_proc() const - { - int64_t count = 0; - - for (auto iter = m_blockPartition.begin(); iter != m_blockPartition.end(); iter++) { - count += iter->second.elemIds.size(); - } - - return count; - } - - int64_t TextMesh::element_count(int64_t id) const - { - int64_t count = 0; - for (const auto &elementData : m_data.elementDataVec) { - if (get_part_id(elementData.partName) == id) { - count++; - } - } - - return count; - } - - int64_t TextMesh::element_count_proc(int64_t id) const - { - int64_t count = 0; - int myProc = m_myProcessor; - for (const auto &elementData : m_data.elementDataVec) { - if (get_part_id(elementData.partName) == id && elementData.proc == myProc) { - count++; - } - } - - return count; - } - - Topology TextMesh::get_topology_for_part(int64_t id) const - { - unsigned partId = id; - std::string partName = m_data.partIds.get(partId); - - auto iter = m_partToTopology.find(partName); - ThrowRequireMsg(iter != m_partToTopology.end(), - "Could not find a topology associated with part: " << partName); - - Topology topo = iter->second; - return topo; - } - - std::pair TextMesh::topology_type(int64_t id) const - { - Topology topo = get_topology_for_part(id); - return std::make_pair(topo.name(), topo.num_nodes()); - } - - template void TextMesh::raw_node_map(std::vector &map) const - { - map.resize(node_count_proc()); - INT offset = 0; - - const auto &nodeIds = m_data.nodes_on_proc(m_myProcessor); - for (auto id : nodeIds) { - map[offset++] = id; - } - } - - void TextMesh::node_map(Ioss::Int64Vector &map) const { raw_node_map(map); } - - void TextMesh::node_map(Ioss::IntVector &map) const { raw_node_map(map); } - - int64_t TextMesh::communication_node_count_proc() const - { - int64_t count = 0; - const auto &nodeIds = m_data.nodes_on_proc(m_myProcessor); - - for (auto id : nodeIds) { - size_t numProcsForNode = m_data.procs_for_node(id).size(); - ThrowRequireMsg(numProcsForNode > 0, "Invalid node sharing for id: " << id); - count += numProcsForNode - 1; - ; - } - return count; - } - - void TextMesh::owning_processor(int *owner, int64_t num_node) - { - const auto &nodeIds = m_data.nodes_on_proc(m_myProcessor); - auto iter = nodeIds.begin(); - - ThrowRequireMsg(num_node == (int64_t)nodeIds.size(), - "Unmatched data sizes in TextMesh::owning_processor()"); - - for (int64_t i = 0; i < num_node; i++) { - const auto &procs = m_data.procs_for_node(*iter); - owner[i] = *procs.begin(); - iter++; - } - } - - class NodeCommunicationMap - { - public: - NodeCommunicationMap(int myProc, Ioss::Int64Vector &map, std::vector &processors) - : m_myProcessor(myProc), m_nodeMap(map), m_processorMap(processors) - { - } - - void fill_map_from_data(const TextMeshData &data) - { - m_fillIndex = 0; - const auto &nodeIds = data.nodes_on_proc(m_myProcessor); - - for (const auto &id : nodeIds) { - fill_map_for_node(id, data); - } - } - - void verify_map_size(const size_t minimumSize) - { - ThrowRequireMsg(m_nodeMap.size() >= minimumSize, "Insufficient size in entity vector"); - ThrowRequireMsg(m_processorMap.size() >= minimumSize, - "Insufficient size in processor vector"); - } - - private: - NodeCommunicationMap(); - NodeCommunicationMap(const NodeCommunicationMap &); - - void add_comm_map_pair(int64_t id, int proc) - { - m_nodeMap[m_fillIndex] = id; - m_processorMap[m_fillIndex] = proc; - - m_fillIndex++; - } - - void fill_map_for_node(int64_t id, const TextMeshData &data) - { - const std::set &procs = data.procs_for_node(id); - - for (int proc : procs) { - if (proc != m_myProcessor) { - add_comm_map_pair(id, proc); - } - } - } - - int m_myProcessor; - Ioss::Int64Vector &m_nodeMap; - std::vector &m_processorMap; - - size_t m_fillIndex = 0; - }; - - void TextMesh::node_communication_map(Ioss::Int64Vector &map, std::vector &processors) - { - NodeCommunicationMap commMap(m_myProcessor, map, processors); - commMap.verify_map_size(communication_node_count_proc()); - commMap.fill_map_from_data(m_data); - } - - void TextMesh::element_map(int64_t block_number, Ioss::Int64Vector &map) const - { - raw_element_map(block_number, map); - } - - void TextMesh::element_map(int64_t block_number, Ioss::IntVector &map) const - { - raw_element_map(block_number, map); - } - - template void TextMesh::raw_element_map(int64_t id, std::vector &map) const - { - auto iter = m_blockPartition.find(id); - ThrowRequireMsg(iter != m_blockPartition.end(), - "Could not find block with id: " << id << " in block partition"); - - map.reserve(iter->second.elemIds.size()); - - for (const auto &elemId : iter->second.elemIds) { - map.push_back(elemId); - } - } - - void TextMesh::element_map(Ioss::Int64Vector &map) const { raw_element_map(map); } - - void TextMesh::element_map(Ioss::IntVector &map) const { raw_element_map(map); } - - template void TextMesh::raw_element_map(std::vector &map) const - { - INT count = element_count_proc(); - map.resize(count); - - for (auto iter = m_blockPartition.begin(); iter != m_blockPartition.end(); iter++) { - size_t offset = iter->second.offset; - size_t blockCount = 0; - for (const auto &elemId : iter->second.elemIds) { - map[offset + blockCount++] = elemId; - } - } - } - - void TextMesh::coordinates(std::vector &coord) const - { - /* create global coordinates */ - int64_t count = node_count_proc(); - coord.resize(count * spatial_dimension()); - coordinates(&coord[0]); - } - - void TextMesh::coordinates(double *coord) const - { - if (!m_data.coords.has_coordinate_data()) - return; - - /* create global coordinates */ - const auto &nodes = m_data.nodes_on_proc(m_myProcessor); - unsigned offset = 0; - - for (auto node : nodes) { - const std::vector &coords = m_data.coords[node]; - for (unsigned i = 0; i < coords.size(); i++) { - coord[offset++] = coords[i]; - } - } - } - - void TextMesh::coordinates(std::vector &x, std::vector &y, - std::vector &z) const - { - if (!m_data.coords.has_coordinate_data()) - return; - - /* create global coordinates */ - int64_t count = node_count_proc(); - x.reserve(count); - y.reserve(count); - z.reserve(count); - - const auto &nodes = m_data.nodes_on_proc(m_myProcessor); - - for (auto node : nodes) { - const std::vector &coords = m_data.coords[node]; - - x.push_back(coords[0]); - y.push_back(coords[1]); - z.push_back((spatial_dimension() == 3) ? coords[2] : 0.0); - } - } - - void TextMesh::coordinates(int component, std::vector &xyz) const - { - /* create global coordinates */ - size_t count = node_count_proc(); - xyz.resize(count); - coordinates(component, xyz.data()); - } - - void TextMesh::coordinates(int component, double *xyz) const - { - const auto &nodes = m_data.nodes_on_proc(m_myProcessor); - unsigned offset = 0; - - if (component == 1) { - for (auto node : nodes) { - const std::vector &coords = m_data.coords[node]; - xyz[offset++] = coords[0]; - } - } - else if (component == 2) { - for (auto node : nodes) { - const std::vector &coords = m_data.coords[node]; - xyz[offset++] = coords[1]; - } - } - else if (component == 3) { - for (auto node : nodes) { - const std::vector &coords = m_data.coords[node]; - xyz[offset++] = (spatial_dimension() == 3) ? coords[2] : 0.0; - } - } - } - - void TextMesh::nodeset_nodes(int64_t id, Ioss::Int64Vector &nodes) const - { - const NodesetData *nodeset = m_data.nodesets.get_group_data(id); - if (nullptr == nodeset) - return; - - nodes.resize(nodeset_node_count_proc(id)); - - int64_t count = 0; - const std::set &myNodes = m_data.nodes_on_proc(m_myProcessor); - - for (int64_t nodeId : nodeset->data) { - if (myNodes.count(nodeId) > 0) { - nodes[count++] = nodeId; - } - } - } - - void TextMesh::sideset_elem_sides(int64_t id, Ioss::Int64Vector &elemSides) const - { - const SidesetData *sideset = m_data.sidesets.get_group_data(id); - if (nullptr == sideset) - return; - - elemSides.resize(2 * sideset_side_count_proc(id)); - - int64_t count = 0; - int myProc = m_myProcessor; - - for (const std::pair &elemSidePair : sideset->data) { - int64_t elemId = elemSidePair.first; - int side = elemSidePair.second; - auto iter = std::find(m_data.elementDataVec.begin(), m_data.elementDataVec.end(), elemId); - if (iter != m_data.elementDataVec.end() && iter->proc == myProc) { - elemSides[count++] = elemId; - elemSides[count++] = side; - } - } - } - - std::set TextMesh::get_blocks_touched_by_sideset(const SidesetData *sideset) const - { - std::set touchedBlocks; - - int myProc = m_myProcessor; - - for (const std::pair &elemSidePair : sideset->data) { - int64_t elemId = elemSidePair.first; - auto iter = std::find(m_data.elementDataVec.begin(), m_data.elementDataVec.end(), elemId); - if (iter != m_data.elementDataVec.end() && iter->proc == myProc) { - touchedBlocks.insert(iter->partName); - } - } - - return touchedBlocks; - } - - std::vector TextMesh::sideset_touching_blocks(int64_t setId) const - { - std::vector touchedBlocks; - - const SidesetData *sideset = m_data.sidesets.get_group_data(setId); - if (nullptr != sideset) { - std::set blockList = get_blocks_touched_by_sideset(sideset); - touchedBlocks.reserve(blockList.size()); - for (const std::string &block : blockList) { - touchedBlocks.push_back(block); - } - } - - return touchedBlocks; - } - - void TextMesh::connectivity(int64_t id, Ioss::Int64Vector &connect) const - { - Topology topo = get_topology_for_part(id); - - int64_t npe = topo.num_nodes(); - connect.resize(element_count_proc(id) * npe); - - raw_connectivity(id, &connect[0]); - } - - void TextMesh::connectivity(int64_t id, Ioss::IntVector &connect) const - { - Topology topo = get_topology_for_part(id); - - int64_t npe = topo.num_nodes(); - connect.resize(element_count_proc(id) * npe); - - raw_connectivity(id, &connect[0]); - } - - void TextMesh::connectivity(int64_t id, int64_t *connect) const { raw_connectivity(id, connect); } - - void TextMesh::connectivity(int64_t id, int *connect) const { raw_connectivity(id, connect); } - - template void TextMesh::raw_connectivity(int64_t id, INT *connect) const - { - unsigned offset = 0; - auto blockIter = m_blockPartition.find(id); - ThrowRequireMsg(blockIter != m_blockPartition.end(), - "Could not find block with id: " << id << " in block partition"); - - for (const auto &elemId : blockIter->second.elemIds) { - auto connIter = m_elementConnectivity.find(elemId); - ThrowRequireMsg(connIter != m_elementConnectivity.end(), - "Could not find element with id: " << id << " in connectivity map"); - - for (auto nodeId : connIter->second) { - connect[offset++] = nodeId; - } - } - } - - void TextMesh::set_variable_count(const std::string &type, size_t count) - { - if (type == "global") { - m_variableCount[Ioss::REGION] = count; - } - else if (type == "element") { - m_variableCount[Ioss::ELEMENTBLOCK] = count; - } - else if (type == "nodal" || type == "node") { - m_variableCount[Ioss::NODEBLOCK] = count; - } - else if (type == "nodeset") { - m_variableCount[Ioss::NODESET] = count; - } - else if (type == "surface" || type == "sideset") { - m_variableCount[Ioss::SIDEBLOCK] = count; - } - else if (type == "assembly") { - m_variableCount[Ioss::ASSEMBLY] = count; - } - else { - std::ostringstream errmsg; - fmt::print(errmsg, - "ERROR: (Iotm::TextMesh::set_variable_count)\n" - " Unrecognized variable type '{}'. Valid types are:\n" - " global, element, node, nodal, nodeset, surface, sideset, assembly.\n", - type); - IOSS_ERROR(errmsg); - } - } - - std::vector TextMesh::get_part_names() const - { - return m_data.partIds.get_part_names_sorted_by_id(); - } - - int64_t TextMesh::get_part_id(const std::string &name) const { return m_data.partIds.get(name); } - - std::vector TextMesh::get_nodeset_names() const - { - return m_data.nodesets.get_part_names(); - } - - std::string TextMesh::get_nodeset_name(int64_t id) const - { - const NodesetData *nodeset = m_data.nodesets.get_group_data(id); - ThrowRequireMsg(nullptr != nodeset, "Could not find nodeset with id" << id); - return nodeset->name; - } - - int64_t TextMesh::get_nodeset_id(const std::string &name) const - { - const NodesetData *nodeset = m_data.nodesets.get_group_data(name); - ThrowRequireMsg(nullptr != nodeset, "Could not find nodeset with name" << name); - return nodeset->id; - } - - std::vector TextMesh::get_sideset_names() const - { - return m_data.sidesets.get_part_names(); - } - - std::string TextMesh::get_sideset_name(int64_t id) const - { - const SidesetData *sideset = m_data.sidesets.get_group_data(id); - ThrowRequireMsg(nullptr != sideset, "Could not find sideset with id" << id); - return sideset->name; - } - - int64_t TextMesh::get_sideset_id(const std::string &name) const - { - const SidesetData *sideset = m_data.sidesets.get_group_data(name); - ThrowRequireMsg(nullptr != sideset, "Could not find sideset with name" << name); - return sideset->id; - } - - std::vector TextMesh::get_assembly_names() const - { - return m_data.assemblies.get_part_names(); - } - - std::string TextMesh::get_assembly_name(int64_t id) const - { - const AssemblyData *assembly = m_data.assemblies.get_group_data(id); - ThrowRequireMsg(nullptr != assembly, "Could not find assembly with id" << id); - return assembly->name; - } - - int64_t TextMesh::get_assembly_id(const std::string &name) const - { - const AssemblyData *assembly = m_data.assemblies.get_group_data(name); - ThrowRequireMsg(nullptr != assembly, "Could not find assembly with name" << name); - return assembly->id; - } - - Ioss::EntityType TextMesh::assembly_type_to_entity_type(const AssemblyType type) const - { - if (type == AssemblyType::BLOCK) { - return Ioss::ELEMENTBLOCK; - } - else if (type == AssemblyType::NODESET) { - return Ioss::NODESET; - } - else if (type == AssemblyType::SIDESET) { - return Ioss::SIDESET; - } - else if (type == AssemblyType::ASSEMBLY) { - return Ioss::ASSEMBLY; - } - - return Ioss::INVALID_TYPE; - } - - Ioss::EntityType TextMesh::get_assembly_type(const std::string &name) const - { - const AssemblyData *assembly = m_data.assemblies.get_group_data(name); - ThrowRequireMsg(nullptr != assembly, "Could not find assembly with name" << name); - - AssemblyType type = assembly->get_assembly_type(); - return assembly_type_to_entity_type(type); - } - - std::vector TextMesh::get_assembly_members(const std::string &name) const - { - const AssemblyData *assembly = m_data.assemblies.get_group_data(name); - ThrowRequireMsg(nullptr != assembly, "Could not find assembly with name" << name); - - return assembly->data; - } - - int64_t TextMesh::assembly_count() const { return m_data.assemblies.get_group_data().size(); } - - std::set TextMesh::get_local_element_ids_for_block(int64_t id) const - { - size_t count = element_count_proc(id); - std::set elemIds; - - int myProc = m_myProcessor; - for (const auto &elementData : m_data.elementDataVec) { - if (get_part_id(elementData.partName) == id && elementData.proc == myProc) { - elemIds.insert(elementData.identifier); - } - } - - ThrowRequireMsg(elemIds.size() == count, "Elements in ElementData vector are not unique"); - return elemIds; - } - - void TextMesh::build_part_to_topology_map() - { - for (const auto &elementData : m_data.elementDataVec) { - auto iter = m_partToTopology.find(elementData.partName); - if (iter == m_partToTopology.end()) { - m_partToTopology[elementData.partName] = elementData.topology; - } - else { - ThrowRequireMsg(iter->second == elementData.topology, - "Element with id: " - << elementData.identifier << " in part named: " << elementData.partName - << " is attempting to reset the part topology: " << iter->second - << " with: " << elementData.topology.name()); - } - } - } - - std::vector TextMesh::get_part_ids(const std::vector &partNames) - { - std::vector partIds; - - size_t numParts = partNames.size(); - partIds.resize(numParts); - - for (size_t i = 0; i < numParts; ++i) { - partIds[i] = get_part_id(partNames[i]); - } - - return partIds; - } - - std::vector TextMesh::get_part_offsets(const std::vector &partIds) - { - std::vector offsets; - - size_t numParts = partIds.size(); - offsets.resize(numParts); - - for (size_t i = 0; i < numParts; ++i) { - offsets[i] = 0; - } - - for (size_t i = 1; i < numParts; ++i) { - offsets[i] = offsets[i - 1] + element_count_proc(partIds[i - 1]); - } - - return offsets; - } - - void TextMesh::build_block_partition_map() - { - std::vector partNames = get_part_names(); - std::vector partIds = get_part_ids(partNames); - std::vector offsets = get_part_offsets(partIds); - - size_t numParts = partNames.size(); - - for (size_t i = 0; i < numParts; ++i) { - const std::string &name = partNames[i]; - int64_t id = partIds[i]; - - BlockPartition partition(offsets[i], name, get_local_element_ids_for_block(id)); - m_blockPartition[id] = partition; - } - } - - void TextMesh::build_element_connectivity_map() - { - int myProc = m_myProcessor; - std::vector nodeIds; - - for (const auto &elementData : m_data.elementDataVec) { - if (elementData.proc == myProc) { - nodeIds.clear(); - for (auto id : elementData.nodeIds) { - nodeIds.push_back(id); - } - - m_elementConnectivity[elementData.identifier] = nodeIds; - } - } - } - - int64_t TextMesh::sideblock_side_count(int64_t id, const std::string &sideBlockName) const - { - int64_t count = 0; - - const SidesetData *sideset = m_data.sidesets.get_group_data(id); - if (nullptr != sideset) { - SideBlockInfo info = sideset->get_side_block_info(sideBlockName); - count = info.sideIndex.size(); - } - return count; - } - - int64_t TextMesh::sideblock_side_count_proc(int64_t id, const std::string &sideBlockName) const - { - int64_t count = 0; - - const SidesetData *sideset = m_data.sidesets.get_group_data(id); - if (nullptr != sideset) { - SideBlockInfo info = sideset->get_side_block_info(sideBlockName); - count = sideset->get_sideblock_indices_local_to_proc(info, m_myProcessor).size(); - } - return count; - } - - void TextMesh::sideblock_elem_sides(int64_t id, const std::string &sideBlockName, - Ioss::Int64Vector &elemSides) const - { - const SidesetData *sideset = m_data.sidesets.get_group_data(id); - if (nullptr == sideset) - return; - - SideBlockInfo info = sideset->get_side_block_info(sideBlockName); - std::vector localSideIndex = - sideset->get_sideblock_indices_local_to_proc(info, m_myProcessor); - elemSides.resize(2 * localSideIndex.size()); - - int64_t count = 0; - - for (size_t sideIndex : localSideIndex) { - const SidesetData::DataType &elemSidePair = sideset->data[sideIndex]; - int64_t elemId = elemSidePair.first; - int side = elemSidePair.second; - - elemSides[count++] = elemId; - elemSides[count++] = side; - } - } - - std::vector - TextMesh::get_side_block_info_for_sideset(const std::string &name) const - { - const SidesetData *sideset = m_data.sidesets.get_group_data(name); - ThrowRequireMsg(nullptr != sideset, "Could not find sideset with name" << name); - return sideset->get_side_block_info(); - } - - std::vector TextMesh::get_local_side_block_indices(const std::string &name, - const SideBlockInfo &info) const - { - const SidesetData *sideset = m_data.sidesets.get_group_data(name); - ThrowRequireMsg(nullptr != sideset, "Could not find sideset with name" << name); - ThrowRequireMsg(name == info.parentName, - "SideBlock: " << info.name << " with parent: " << info.parentName - << " was not created from sideset: " << name); - return sideset->get_sideblock_indices_local_to_proc(info, m_myProcessor); - } - - SplitType TextMesh::get_sideset_split_type(const std::string &name) const - { - const SidesetData *sideset = m_data.sidesets.get_group_data(name); - ThrowRequireMsg(nullptr != sideset, "Could not find sideset with name" << name); - - return sideset->get_split_type(); - } -} // namespace Iotm diff --git a/text_mesh/Iotm_TextMesh.h b/text_mesh/Iotm_TextMesh.h deleted file mode 100644 index 0321012e674c..000000000000 --- a/text_mesh/Iotm_TextMesh.h +++ /dev/null @@ -1,329 +0,0 @@ -// Copyright(C) 1999-2022 National Technology & Engineering Solutions -// of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with -// NTESS, the U.S. Government retains certain rights in this software. -// -// See packages/seacas/LICENSE for details - -#pragma once - -#include -#include // for EntityType - -#include // for size_t -#include // for int64_t -#include // for map, etc -#include // for string -#include -#include // for pair -#include // for vector - -#include "Ioss_ElementTopology.h" -#include "Ioss_StandardElementTypes.h" - -#include "Iotm_TextMeshTopologyMapping.h" -#include "Iotm_TextMeshUtils.h" - -namespace Iotm { - using Topology = TopologyMapEntry; - using TextMeshData = text_mesh::TextMeshData; - using ElementData = text_mesh::ElementData; - using SidesetData = text_mesh::SidesetData; - using NodesetData = text_mesh::NodesetData; - using AssemblyData = text_mesh::AssemblyData; - using Coordinates = text_mesh::Coordinates; - using TextMeshParser = text_mesh::TextMeshParser; - using ErrorHandler = text_mesh::ErrorHandler; - using SideBlockInfo = text_mesh::SideBlockInfo; - using SplitType = text_mesh::SplitType; - using AssemblyType = text_mesh::AssemblyType; - - inline std::ostream &operator<<(std::ostream &out, const TopologyMapEntry &t) - { - return out << t.name(); - } - - struct BlockPartition - { - size_t offset; - std::string name; - std::set elemIds; - - BlockPartition() : offset(0), name("") {} - - BlockPartition(size_t offset_, const std::string &name_, const std::set &elemIds_) - : offset(offset_), name(name_), elemIds(elemIds_) - { - } - }; - - class TextMesh - { - public: - explicit TextMesh(const std::string ¶meters, int proc_count = 1, int my_proc = 0); - TextMesh(int proc_count = 1, int my_proc = 0); - TextMesh(); - TextMesh(const TextMesh &) = delete; - TextMesh &operator=(const TextMesh &) = delete; - - virtual ~TextMesh() = default; - - /** - * Return number of nodes in the entire model. - */ - virtual int64_t node_count() const; - - /** - * Return number of nodes on this processor. - */ - virtual int64_t node_count_proc() const; - - /** - * Return number of element blocks in the entire model. - */ - virtual int64_t block_count() const; - - /** - * Return number of nodesets in the entire model. - */ - virtual int64_t nodeset_count() const; - - /** - * Return number of nodeset nodes on nodeset 'id' - */ - int64_t nodeset_node_count(int64_t id) const; - - /** - * Return number of nodeset nodes on nodeset 'id' on the current processor - */ - virtual int64_t nodeset_node_count_proc(int64_t id) const; - - /** - * Return number of sidesets in the entire model. - */ - virtual int64_t sideset_count() const; - - /** - * Return number of sideset 'sides' on sideset 'id' - */ - int64_t sideset_side_count(int64_t id) const; - - /** - * Return number of sideset 'sides' on sideset 'id' on the current - * processor. - */ - virtual int64_t sideset_side_count_proc(int64_t id) const; - - /** - * Return number of sideblock 'sides' on sideset 'id' and sideblock 'sideBlockName' - */ - int64_t sideblock_side_count(int64_t id, const std::string &sideBlockName) const; - - /** - * Return number of sideset 'sides' on sideset 'id' and sideblock 'sideBlockName' on the current - * processor. - */ - virtual int64_t sideblock_side_count_proc(int64_t id, const std::string &sideBlockName) const; - - /** - * Return number of elements in all element blocks in the model. - */ - virtual int64_t element_count() const; - - /** - * Return number of elements in all element blocks on this processor. - */ - virtual int64_t element_count_proc() const; - - int64_t timestep_count() const { return m_timestepCount; } - /** - * Return number of elements in the element block with id - * 'block_number'. - */ - virtual int64_t element_count(int64_t block_number) const; - - /** - * Return number of elements on this processor in the element - * block with id 'block_number'. - */ - virtual int64_t element_count_proc(int64_t block_number) const; - - /** - * Return number of assemblies in the entire model. - */ - int64_t assembly_count() const; - - /** - * Returns pair containing "topology type string" and "number of - * nodes / element". The topology type string will be "hex8" for - * the hex element block and "shell4" for the shell element blocks. - */ - virtual std::pair topology_type(int64_t block_number) const; - - virtual int64_t communication_node_count_proc() const; - virtual void node_communication_map(Ioss::Int64Vector &map, std::vector &proc); - virtual void owning_processor(int *owner, int64_t num_node); - /** - * Fill the passed in 'map' argument with the node map - * "map[local_position] = global_id" for the nodes on this - * processor. - */ - virtual void node_map(Ioss::Int64Vector &map) const; - virtual void node_map(Ioss::IntVector &map) const; - - /** - * Fill the passed in 'map' argument with the element map - * "map[local_position] = global_id" for the elements on this - * processor in block "block_number". - */ - virtual void element_map(int64_t block_number, Ioss::Int64Vector &map) const; - virtual void element_map(int64_t block_number, Ioss::IntVector &map) const; - - /** - * Fill the passed in 'map' argument with the element map - * "map[local_position] = global_id" for all elements on this - * processor - */ - virtual void element_map(Ioss::Int64Vector &map) const; - virtual void element_map(Ioss::IntVector &map) const; - - /** - * Return the connectivity for the elements on this processor in - * the block with id 'block_number'. If the elements in this block - * have 'npe' nodes per element, then the first 'npe' entries in - * the 'conn' vector will be the nodal connectivity for the first - * element; the next 'npe' entries are the nodal connectivity for - * the second element. The 'connect' vector will be resized to the - * size required to contain the nodal connectivity for the - * specified block; all information in 'connect' will be overwritten. - */ - void connectivity(int64_t block_number, Ioss::Int64Vector &connect) const; - void connectivity(int64_t block_number, Ioss::IntVector &connect) const; - void connectivity(int64_t block_number, int64_t *connect) const; - virtual void connectivity(int64_t block_number, int *connect) const; - - /** - * Return the coordinates for all nodes on this processor. The - * first 3 entries in the 'coord' vector are the x, y, and z - * coordinates of the first node, etc. The 'coord' vector will be - * resized to the size required to contain the nodal coordinates; - * all information in 'coord' will be overwritten. - */ - virtual void coordinates(std::vector &coord) const; - virtual void coordinates(double *coord) const; - - /** - * Return the coordinates for all nodes on this processor in - * separate vectors. The vectors will be resized to the size - * required to contain the nodal coordinates; all information in - * the vectors will be overwritten. - */ - virtual void coordinates(std::vector &x, std::vector &y, - std::vector &z) const; - - /** - * Return the coordinates for componenet 'comp' (1=x, 2=y, 3=z) - * for all nodes on this processor. The - * vector will be resized to the size required to contain the - * nodal coordinates; all information in the vector will be - * overwritten. - * It is an error to request the coordinates via this function - * if a rotation is defined. - */ - virtual void coordinates(int component, std::vector &xyz) const; - virtual void coordinates(int component, double *xyz) const; - - /** - * Return the list of nodes in nodeset 'id' on this processor. - * The 'nodes' vector will be resized to the size required to - * contain the node list. The ids are global ids. - */ - virtual void nodeset_nodes(int64_t id, Ioss::Int64Vector &nodes) const; - - /** - * Return the list of the face/ordinal pairs - * "elem_sides[local_position] = element global_id" and - * "elem_sides[local_position+1] = element local face id (0-based)" - * for the faces in sideset 'id' on this - * processor. The 'elem_sides' vector will be resized to the size - * required to contain the list. The element ids are global ids, - * the side ordinal is 0-based. - */ - virtual void sideset_elem_sides(int64_t id, Ioss::Int64Vector &elemSides) const; - virtual void sideblock_elem_sides(int64_t sidesetId, const std::string &sideBlockName, - Ioss::Int64Vector &elemSides) const; - - virtual std::vector sideset_touching_blocks(int64_t set_id) const; - - size_t get_variable_count(Ioss::EntityType type) const - { - return m_variableCount.find(type) != m_variableCount.end() - ? m_variableCount.find(type)->second - : 0; - } - - std::vector get_part_names() const; - int64_t get_part_id(const std::string &name) const; - - std::vector get_nodeset_names() const; - std::string get_nodeset_name(int64_t id) const; - int64_t get_nodeset_id(const std::string &name) const; - - std::vector get_sideset_names() const; - std::string get_sideset_name(int64_t id) const; - int64_t get_sideset_id(const std::string &name) const; - - std::vector get_assembly_names() const; - std::string get_assembly_name(int64_t id) const; - int64_t get_assembly_id(const std::string &name) const; - Ioss::EntityType get_assembly_type(const std::string &name) const; - std::vector get_assembly_members(const std::string &name) const; - - Ioss::EntityType assembly_type_to_entity_type(const AssemblyType type) const; - - unsigned spatial_dimension() const; - - std::vector get_side_block_info_for_sideset(const std::string &name) const; - std::vector get_local_side_block_indices(const std::string &name, - const SideBlockInfo &info) const; - SplitType get_sideset_split_type(const std::string &name) const; - - private: - template void raw_element_map(int64_t block_number, std::vector &map) const; - template void raw_element_map(std::vector &map) const; - template void raw_connectivity(int64_t block_number, INT *connect) const; - template void raw_node_map(std::vector &map) const; - - void set_variable_count(const std::string &type, size_t count); - - void initialize(); - - void build_part_to_topology_map(); - void build_block_partition_map(); - void build_element_connectivity_map(); - - std::vector get_part_ids(const std::vector &partNames); - std::vector get_part_offsets(const std::vector &partIds); - - Topology get_topology_for_part(int64_t id) const; - - std::set get_local_element_ids_for_block(int64_t id) const; - - std::set get_blocks_touched_by_sideset(const SidesetData *sideset) const; - - size_t m_processorCount{0}; - size_t m_myProcessor{0}; - - size_t m_timestepCount{0}; - std::map m_variableCount; - - TextMeshData m_data; - - ErrorHandler m_errorHandler; - - std::unordered_map m_partToTopology; - - std::unordered_map m_blockPartition; - - std::unordered_map> m_elementConnectivity; - }; -} // namespace Iotm diff --git a/text_mesh/Iotm_TextMeshTopologyMapping.h b/text_mesh/Iotm_TextMeshTopologyMapping.h deleted file mode 100644 index 1ec34701740f..000000000000 --- a/text_mesh/Iotm_TextMeshTopologyMapping.h +++ /dev/null @@ -1,176 +0,0 @@ -// Copyright(C) 1999-2020, 2022 National Technology & Engineering Solutions -// of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with -// NTESS, the U.S. Government retains certain rights in this software. -// -// See packages/seacas/LICENSE for details - -#pragma once - -#include -#include // for EntityType - -#include // for size_t -#include // for int64_t -#include // for map, etc -#include // for string -#include -#include // for pair -#include // for vector - -#include "Ioss_ElementTopology.h" -#include "Ioss_StandardElementTypes.h" - -#include "Iotm_TextMeshUtils.h" - -namespace Iotm { - struct TopologyMapEntry - { - using DimensionArray = bool[4]; - - unsigned int id; - Ioss::ElementTopology *topology; - - // Defines what spatial dimension the topology is valid on - DimensionArray validSpatialDimensions; - - TopologyMapEntry() - : id(Ioss::ElementTopology::get_unique_id(Ioss::Unknown::name)), - topology(Ioss::ElementTopology::factory(Ioss::Unknown::name)) - { - set_valid_spatial_dimensions({false, false, false, false}); - } - - TopologyMapEntry(const std::string &name, const DimensionArray &validSpatialDimensions_) - : id(Ioss::ElementTopology::get_unique_id(name)), - topology(Ioss::ElementTopology::factory(name)) - { - set_valid_spatial_dimensions(validSpatialDimensions_); - } - - TopologyMapEntry(const TopologyMapEntry &topo) : id(topo.id), topology(topo.topology) - { - set_valid_spatial_dimensions(topo.validSpatialDimensions); - } - - void set_valid_spatial_dimensions(const DimensionArray &validSpatialDimensions_) - { - validSpatialDimensions[0] = validSpatialDimensions_[0]; - validSpatialDimensions[1] = validSpatialDimensions_[1]; - validSpatialDimensions[2] = validSpatialDimensions_[2]; - validSpatialDimensions[3] = validSpatialDimensions_[3]; - } - - bool defined_on_spatial_dimension(const unsigned spatialDim) const - { - if (spatialDim > 3) { - return false; - } - return validSpatialDimensions[spatialDim]; - } - - const std::string name() const { return topology->name(); } - - int num_nodes() const { return topology->number_nodes(); } - - bool equivalent_valid_spatial_dimensions(const DimensionArray &validSpatialDimensions_) const - { - return validSpatialDimensions[0] == validSpatialDimensions_[0] && - validSpatialDimensions[1] == validSpatialDimensions_[1] && - validSpatialDimensions[2] == validSpatialDimensions_[2] && - validSpatialDimensions[3] == validSpatialDimensions_[3]; - } - - bool operator==(const TopologyMapEntry &rhs) const - { - return id == rhs.id && topology == rhs.topology && - equivalent_valid_spatial_dimensions(rhs.validSpatialDimensions); - } - - bool operator!=(const TopologyMapEntry &rhs) const { return !(*this == rhs); } - - bool valid_side(unsigned side) const - { - unsigned numSides = topology->number_boundaries(); - if (side > 0 && side <= numSides) - return true; - return false; - } - - std::string side_topology_name(unsigned side) const - { - if (!valid_side(side)) - return ""; - - Ioss::ElementTopology *sideTopology = topology->boundary_type(side); - return sideTopology->name(); - } - - unsigned side_topology_num_nodes(unsigned side) const - { - if (!valid_side(side)) - return 0; - - Ioss::ElementTopology *sideTopology = topology->boundary_type(side); - return sideTopology->number_nodes(); - } - }; - - class IossTopologyMapping : public text_mesh::TopologyMapping - { - public: - TopologyMapEntry invalid_topology() const override { return TopologyMapEntry(); } - - // clang-format off - void initialize_topology_map() override - { - m_nameToTopology = { - {"NODE", TopologyMapEntry(Ioss::Node::name, {false,true ,true ,true })}, - {"LINE_2", TopologyMapEntry(Ioss::Edge2::name, {false,false,true ,true })}, - {"LINE_3", TopologyMapEntry(Ioss::Edge3::name, {false,false,true ,true })}, - {"TRI_3", TopologyMapEntry(Ioss::Tri3::name, {false,false,false,true })}, - {"TRI_4", TopologyMapEntry(Ioss::Tri4::name, {false,false,false,true })}, - {"TRI_6", TopologyMapEntry(Ioss::Tri6::name, {false,false,false,true })}, - {"QUAD_4", TopologyMapEntry(Ioss::Quad4::name, {false,false,false,true })}, - {"QUAD_6", TopologyMapEntry(Ioss::Quad6::name, {false,false,false,true })}, - {"QUAD_8", TopologyMapEntry(Ioss::Quad8::name, {false,false,false,true })}, - {"QUAD_9", TopologyMapEntry(Ioss::Quad9::name, {false,false,false,true })}, - {"PARTICLE", TopologyMapEntry(Ioss::Sphere::name, {false,true ,true ,true })}, - {"LINE_2_1D", TopologyMapEntry(Ioss::Edge2::name, {false,true ,false,false})}, - {"LINE_3_1D", TopologyMapEntry(Ioss::Edge2::name, {false,true ,false,false})}, - {"BEAM_2", TopologyMapEntry(Ioss::Beam2::name, {false,false,true ,true })}, - {"BEAM_3", TopologyMapEntry(Ioss::Beam3::name, {false,false,true ,true })}, - {"SHELL_LINE_2", TopologyMapEntry(Ioss::ShellLine2D2::name,{false,false,true ,false})}, - {"SHELL_LINE_3", TopologyMapEntry(Ioss::ShellLine2D3::name,{false,false,true ,false})}, - {"SPRING_2", TopologyMapEntry(Ioss::Spring2::name, {false,true ,true ,true })}, - {"SPRING_3", TopologyMapEntry(Ioss::Spring3::name, {false,true ,true ,true })}, - {"TRI_3_2D", TopologyMapEntry(Ioss::Tri3::name, {false,false,true ,false})}, - {"TRI_4_2D", TopologyMapEntry(Ioss::Tri4::name, {false,false,true ,false})}, - {"TRI_6_2D", TopologyMapEntry(Ioss::Tri6::name, {false,false,true ,false})}, - {"QUAD_4_2D", TopologyMapEntry(Ioss::Quad4::name, {false,false,true ,false})}, - {"QUAD_8_2D", TopologyMapEntry(Ioss::Quad8::name, {false,false,true ,false})}, - {"QUAD_9_2D", TopologyMapEntry(Ioss::Quad9::name, {false,false,true ,false})}, - {"SHELL_TRI_3", TopologyMapEntry(Ioss::TriShell3::name, {false,false,false,true })}, - {"SHELL_TRI_4", TopologyMapEntry(Ioss::TriShell4::name, {false,false,false,true })}, - {"SHELL_TRI_6", TopologyMapEntry(Ioss::TriShell6::name, {false,false,false,true })}, - {"SHELL_QUAD_4", TopologyMapEntry(Ioss::Shell4::name, {false,false,false,true })}, - {"SHELL_QUAD_8", TopologyMapEntry(Ioss::Shell8::name, {false,false,false,true })}, - {"SHELL_QUAD_9", TopologyMapEntry(Ioss::Shell9::name, {false,false,false,true })}, - {"TET_4", TopologyMapEntry(Ioss::Tet4::name, {false,false,false,true })}, - {"TET_8", TopologyMapEntry(Ioss::Tet8::name, {false,false,false,true })}, - {"TET_10", TopologyMapEntry(Ioss::Tet10::name, {false,false,false,true })}, - {"TET_11", TopologyMapEntry(Ioss::Tet11::name, {false,false,false,true })}, - {"PYRAMID_5", TopologyMapEntry(Ioss::Pyramid5::name, {false,false,false,true })}, - {"PYRAMID_13", TopologyMapEntry(Ioss::Pyramid13::name, {false,false,false,true })}, - {"PYRAMID_14", TopologyMapEntry(Ioss::Pyramid14::name, {false,false,false,true })}, - {"WEDGE_6", TopologyMapEntry(Ioss::Wedge6::name, {false,false,false,true })}, - {"WEDGE_12", TopologyMapEntry(Ioss::Wedge12::name, {false,false,false,true })}, - {"WEDGE_15", TopologyMapEntry(Ioss::Wedge15::name, {false,false,false,true })}, - {"WEDGE_18", TopologyMapEntry(Ioss::Wedge18::name, {false,false,false,true })}, - {"HEX_8", TopologyMapEntry(Ioss::Hex8::name, {false,false,false,true })}, - {"HEX_20", TopologyMapEntry(Ioss::Hex20::name, {false,false,false,true })}, - {"HEX_27", TopologyMapEntry(Ioss::Hex27::name, {false,false,false,true })} - }; - } - // clang-format on - }; -} // namespace Iotm diff --git a/text_mesh/Iotm_TextMeshUtils.h b/text_mesh/Iotm_TextMeshUtils.h deleted file mode 100644 index 38c6e1267974..000000000000 --- a/text_mesh/Iotm_TextMeshUtils.h +++ /dev/null @@ -1,2230 +0,0 @@ -#pragma once - -// ####################### Start Clang Header Tool Managed Headers ######################## -// clang-format off -#include // for toupper, isspace, isdigit -#include // for size_t -#include // for remove, etc -#include // for insert_iterator -#include -#include // for set -#include // for operator<<, etc -#include // for basic_string, etc -#include // for pair -#include // for vector -#include -#include // for ostringstream -#include -#include -#include -#include -#include "vtk_fmt.h" // xxx(kitware) -#include VTK_FMT(fmt/ostream.h) - -// xxx(kitware) -#if defined(_WIN32) && !defined(__CYGWIN__) -#define strcasecmp stricmp -#endif - -// clang-format on -// ####################### End Clang Header Tool Managed Headers ######################## -namespace Iotm { - namespace text_mesh { - using ErrorHandler = std::function; - - template void handle_error(const std::ostringstream &message) - { - throw EXCEPTION((message).str()); - } - - inline void default_error_handler(const std::ostringstream &message) - { - handle_error(message); - } - - template - ForwardIt bound_search(ForwardIt first, ForwardIt last, const T &value) - { - first = std::lower_bound(first, last, value); - if (!(first == last) && !(value < *first)) - return first; - - return last; - } - - template - ForwardIt bound_search(ForwardIt first, ForwardIt last, const T &value, Compare comp) - { - first = std::lower_bound(first, last, value, comp); - if (!(first == last) && !(comp(value, *first))) - return first; - - return last; - } - - inline std::string strip(const std::string &inpt) - { - auto start_it = inpt.begin(); - auto end_it = inpt.rbegin(); - while (std::isspace(*start_it)) - ++start_it; - while (std::isspace(*end_it)) - ++end_it; - return std::string(start_it, end_it.base()); - } - - inline std::vector get_tokens(const std::string &str, - const std::string &separators) - { - std::vector tokens; - auto first = std::begin(str); - while (first != std::end(str)) { - const auto second = - std::find_first_of(first, std::end(str), std::begin(separators), std::end(separators)); - if (first != second) { - std::string token = strip(std::string(first, second)); - tokens.emplace_back(token); - } - if (second == std::end(str)) { - break; - } - first = std::next(second); - } - return tokens; - } - - inline void convert_to_upper_case(std::string &str) - { - std::transform(str.begin(), str.end(), str.begin(), ::toupper); - } - - inline void convert_to_lower_case(std::string &str) - { - std::transform(str.begin(), str.end(), str.begin(), ::tolower); - } - - inline bool is_number(const std::string &str) - { - for (char const &c : str) { - if (std::isdigit(c) == 0) - return false; - } - return true; - } - - template std::set transform_to_set(const std::vector &dataAsVector) - { - std::set dataAsSet; - - for (const T &data : dataAsVector) { - dataAsSet.insert(data); - } - - return dataAsSet; - } - - inline std::pair get_id_from_part_name(const std::string &name, - const std::string &prefix) - { - const unsigned prefixLength = prefix.length(); - - if (name.length() < prefixLength + 1) - return std::make_pair(0, false); - - const std::string namePrefix = name.substr(0, prefixLength); - const std::string nameSuffix = name.substr(prefixLength); - - if (strcasecmp(namePrefix.c_str(), prefix.c_str()) != 0) - return std::make_pair(0, false); - - unsigned id; - std::istringstream nameSuffixStream(nameSuffix); - nameSuffixStream >> id; - if (nameSuffixStream.fail()) { - return std::make_pair(0, false); - } - return std::make_pair(id, true); - } - - template class TopologyMapping - { - public: - using Topology = T; - - virtual ~TopologyMapping() {} - - Topology topology(const std::string &textMeshName) const - { - auto it = m_nameToTopology.find(textMeshName); - return (it != m_nameToTopology.end() ? it->second : invalid_topology()); - } - - virtual Topology invalid_topology() const = 0; - virtual void initialize_topology_map() = 0; - - protected: - std::unordered_map m_nameToTopology; - }; - - class PartIdMapping - { - public: - PartIdMapping() : m_idsAssigned(false) - { - set_error_handler([](const std::ostringstream &errmsg) { default_error_handler(errmsg); }); - } - - void register_part_name(const std::string &name) - { - m_partNames.push_back(name); - handle_block_part(name); - } - - void register_part_name_with_id(const std::string &name, unsigned id) - { - register_part_name(name); - assign(name, id); - } - - unsigned get(const std::string &name) const - { - if (!m_idsAssigned) - assign_ids(); - return get_part_id(name); - } - - std::string get(unsigned id) const - { - if (!m_idsAssigned) - assign_ids(); - return get_part_name(id); - } - - unsigned size() const - { - if (!m_idsAssigned) - assign_ids(); - return m_ids.size(); - } - - std::vector get_part_names_sorted_by_id() const - { - if (!m_idsAssigned) - assign_ids(); - - std::vector names; - names.reserve(m_parts.size()); - - for (auto iter : m_parts) { - names.push_back(iter.second); - } - - return names; - } - - bool is_registered(const std::string &name) const { return m_ids.count(name) > 0; } - - const std::vector &get_part_names() const { return m_partNames; } - - void set_error_handler(ErrorHandler errorHandler) { m_errorHandler = errorHandler; } - - const std::string get_group_type() const { return "element block"; } - - void finalize_parse() - { - if (!m_idsAssigned) - assign_ids(); - } - - private: - void handle_block_part(const std::string &name) - { - auto result = get_id_from_part_name(name, "BLOCK_"); - - if (!result.second) - return; - - assign(name, result.first); - } - - void assign_ids() const - { - unsigned nextPartId = 1; - for (const std::string &name : m_partNames) { - if (m_ids.find(name) == m_ids.end()) { - while (is_assigned(nextPartId)) - nextPartId++; - - assign(name, nextPartId); - } - } - - m_idsAssigned = true; - } - - void assign(const std::string &name, unsigned id) const - { - validate_name_and_id(name, id); - m_ids[name] = id; - m_parts[id] = name; - } - - void validate_name_and_id(const std::string &name, unsigned id) const - { - if (is_registered(name)) { - if (m_ids[name] != id) { - std::ostringstream errmsg; - errmsg << "Cannot assign part '" << name << "' two different ids: " << m_ids[name] - << " and " << id; - m_errorHandler(errmsg); - } - } - else { - if (is_assigned(id)) { - std::ostringstream errmsg; - errmsg << "Part id " << id << " has already been assigned, cannot assign it to part '" - << name << "'"; - m_errorHandler(errmsg); - } - } - } - - bool is_assigned(unsigned id) const { return m_parts.count(id) > 0; } - - unsigned get_part_id(const std::string &name) const - { - auto it = m_ids.find(name); - if (it == m_ids.end()) { - std::ostringstream errmsg; - errmsg << "PartIdMapping has no ID for invalid part name " << name; - m_errorHandler(errmsg); - } - return it->second; - } - - std::string get_part_name(unsigned id) const - { - auto it = m_parts.find(id); - if (it == m_parts.end()) { - std::ostringstream errmsg; - errmsg << "PartIdMapping has no part name for invalid id " << id; - m_errorHandler(errmsg); - } - return it->second; - } - - std::vector m_partNames; - mutable std::unordered_map m_ids; - mutable std::map m_parts; - mutable bool m_idsAssigned; - - ErrorHandler m_errorHandler; - }; - - template class Coordinates - { - public: - Coordinates() - { - set_error_handler([](const std::ostringstream &errmsg) { default_error_handler(errmsg); }); - } - - const std::vector &operator[](const EntityId nodeId) const - { - auto it = m_nodalCoords.find(nodeId); - - if (it == m_nodalCoords.end()) { - std::ostringstream errmsg; - errmsg << "Could not find node id " << nodeId; - m_errorHandler(errmsg); - } - - return it->second; - } - - void set_coordinate_data(const unsigned spatialDim, const std::set &nodeIds, - const std::vector &coordinates) - { - if (!coordinates.empty()) { - validate_num_coordinates(spatialDim, nodeIds, coordinates); - fill_coordinate_map(spatialDim, nodeIds, coordinates); - m_hasCoordinateData = true; - } - } - - void set_error_handler(ErrorHandler errorHandler) { m_errorHandler = errorHandler; } - - bool has_coordinate_data() const { return m_hasCoordinateData; } - - private: - void validate_num_coordinates(const unsigned spatialDim, const std::set &nodeIds, - const std::vector &coordinates) - { - if (coordinates.size() != nodeIds.size() * spatialDim) { - std::ostringstream errmsg; - errmsg << "Number of coordinates: " << coordinates.size() - << ", Number of nodes: " << nodeIds.size() - << ", Spatial dimension: " << spatialDim; - m_errorHandler(errmsg); - } - } - - void fill_coordinate_map(const unsigned spatialDim, const std::set &nodeIds, - const std::vector &coordinates) - { - std::vector::const_iterator coordIter = coordinates.begin(); - for (const EntityId &nodeId : nodeIds) { - m_nodalCoords[nodeId] = std::vector(coordIter, coordIter + spatialDim); - coordIter += spatialDim; - } - } - - bool m_hasCoordinateData{false}; - std::unordered_map> m_nodalCoords; - ErrorHandler m_errorHandler; - }; - - template struct ElementData - { - int proc; - EntityId identifier; - Topology topology; - std::vector nodeIds; - std::string partName = ""; - - operator EntityId() const { return identifier; } - }; - - template struct ElementDataLess - { - bool operator()(const ElementData &lhs, - const ElementData &rhs) - { - return lhs.identifier < rhs.identifier; - }; - - bool operator()(const ElementData &lhs, const EntityId rhs) - { - return lhs.identifier < rhs; - }; - - bool operator()(const EntityId lhs, const ElementData &rhs) - { - return lhs < rhs.identifier; - }; - - bool operator()(const EntityId lhs, const EntityId rhs) { return lhs < rhs; }; - }; - - struct SideBlockInfo - { - std::string name; - std::string parentName; - std::string sideTopology; - std::string elementTopology; - std::string touchingBlock; - std::vector sideIndex; - unsigned numNodesPerSide; - }; - - enum SplitType { TOPOLOGY, ELEMENT_BLOCK, NO_SPLIT, INVALID_SPLIT }; - - inline std::ostream &operator<<(std::ostream &out, const SplitType &t) - { - switch (t) { - case SplitType::TOPOLOGY: return out << "TOPOLOGY"; break; - case SplitType::ELEMENT_BLOCK: return out << "ELEMENT_BLOCK"; break; - case SplitType::NO_SPLIT: return out << "NO_SPLIT"; break; - default: return out << "INVALID"; break; - } - return out << "INVALID[" << (unsigned)t << "]"; - } - - enum AssemblyType { ASSEMBLY, BLOCK, SIDESET, NODESET, INVALID_ASSEMBLY }; - - inline std::ostream &operator<<(std::ostream &out, const AssemblyType &t) - { - switch (t) { - case AssemblyType::ASSEMBLY: return out << "ASSEMBLY"; break; - case AssemblyType::BLOCK: return out << "ELEMENT_BLOCK"; break; - case AssemblyType::SIDESET: return out << "SIDESET"; break; - case AssemblyType::NODESET: return out << "NODESET"; break; - default: return out << "INVALID"; break; - } - return out << "INVALID[" << (unsigned)t << "]"; - } - - template struct EntityGroupData - { - using DataType = T; - static constexpr unsigned INVALID_ID = std::numeric_limits::max(); - - bool hasInputName = false; - unsigned id = INVALID_ID; - std::string name = ""; - std::string type = ""; - std::vector data; - - bool has_valid_id() const { return id != 0 && id != INVALID_ID; } - bool has_name() const { return !name.empty(); } - }; - - template class EntityGroup - { - private: - using DataType = typename GroupData::DataType; - - public: - EntityGroup(const std::string &type, const std::string &standardNamePrefix, - const std::vector &invalidNamePrefixes) - : m_idsAssigned(false), m_type(type), m_standardPrefix(standardNamePrefix), - m_invalidPrefixes(invalidNamePrefixes) - { - set_error_handler([](const std::ostringstream &errmsg) { default_error_handler(errmsg); }); - } - - virtual ~EntityGroup() {} - - virtual void set_error_handler(ErrorHandler errorHandler) { m_errorHandler = errorHandler; } - - GroupData *add_group_data(const std::string &name, const std::vector &data) - { - GroupData groupData; - groupData.data = data; - groupData.type = m_type; - - if (!name.empty()) { - verify_name(name); - groupData.name = name; - groupData.hasInputName = true; - } - - m_groupDataVec.push_back(groupData); - - return &m_groupDataVec.back(); - } - - void finalize_parse() - { - assign_id_from_standard_name(); - assign_id_and_name_for_empty_name(); - assign_id_for_non_standard_name(); - - if (m_groupDataVec.size() != m_groupDataMap.size()) { - std::ostringstream errmsg; - errmsg << "Error populating " << m_type << " map"; - m_errorHandler(errmsg); - } - m_idsAssigned = true; - } - - size_t size() const { return m_groupDataVec.size(); } - - const std::vector &get_group_data() const { return m_groupDataVec; } - - const std::vector &get_part_names() const { return m_partNames; } - - const std::string &get_group_type() const { return m_type; } - - const GroupData *get_group_data(unsigned id) const - { - if (is_assigned(id)) { - auto iter = m_parts.find(id); - return &m_groupDataVec[m_groupDataMap[iter->second]]; - } - - return nullptr; - } - - const GroupData *get_group_data(std::string name) const - { - convert_to_upper_case(name); - if (is_registered(name)) { - return &m_groupDataVec[m_groupDataMap[name]]; - } - - return nullptr; - } - - bool is_registered(const std::string &name) const { return m_ids.count(name) > 0; } - - protected: - EntityGroup(); - - unsigned get_unassigned_id() const - { - unsigned nextPartId = 1; - while (is_assigned(nextPartId)) - nextPartId++; - return nextPartId; - } - - void validate_group_meta_data(const GroupData &groupData) - { - if (!groupData.has_name()) { - std::ostringstream errmsg; - errmsg << m_type << " has no name"; - m_errorHandler(errmsg); - } - - if (!groupData.has_valid_id()) { - std::ostringstream errmsg; - errmsg << m_type << " named " << groupData.name << " has invalid id"; - m_errorHandler(errmsg); - } - - if (is_registered(groupData.name)) { - std::ostringstream errmsg; - errmsg << "Multiple declarations of " << m_type << ": " << groupData.name; - m_errorHandler(errmsg); - } - } - - void assign(size_t index) - { - GroupData &groupData = m_groupDataVec[index]; - - convert_to_upper_case(groupData.name); - validate_group_meta_data(groupData); - - m_partNames.push_back(groupData.name); - m_ids[groupData.name] = groupData.id; - m_parts[groupData.id] = groupData.name; - m_groupDataMap[groupData.name] = index; - } - - void assign_id_from_standard_name() - { - for (size_t i = 0; i < m_groupDataVec.size(); i++) { - GroupData &groupData = m_groupDataVec[i]; - if (groupData.has_name()) { - std::pair result = - get_id_from_part_name(groupData.name, m_standardPrefix); - - if (result.second) { - groupData.id = result.first; - assign(i); - } - } - } - } - - void assign_id_and_name_for_empty_name() - { - for (size_t i = 0; i < m_groupDataVec.size(); i++) { - GroupData &groupData = m_groupDataVec[i]; - if (!groupData.has_name()) { - unsigned id = get_unassigned_id(); - - std::ostringstream oss; - oss << m_standardPrefix; - oss << id; - std::string name = oss.str(); - - groupData.id = id; - groupData.name = name; - assign(i); - } - } - } - - void assign_id_for_non_standard_name() - { - for (size_t i = 0; i < m_groupDataVec.size(); i++) { - GroupData &groupData = m_groupDataVec[i]; - if (groupData.has_name()) { - std::pair result = - get_id_from_part_name(groupData.name, m_standardPrefix); - - if (!result.second) { - groupData.id = get_unassigned_id(); - assign(i); - } - } - } - } - - bool is_assigned(unsigned id) const { return m_parts.count(id) > 0; } - - void verify_name(const std::string &name) - { - for (const std::string &invalidPrefix : m_invalidPrefixes) { - const unsigned prefixLength = invalidPrefix.length(); - const std::string namePrefix = name.substr(0, prefixLength); - - if (strcasecmp(namePrefix.c_str(), invalidPrefix.c_str()) == 0) { - std::ostringstream errmsg; - errmsg << "Invalid name '" << name << "' for a " << m_type << " part"; - m_errorHandler(errmsg); - } - } - } - - std::vector m_partNames; - mutable std::unordered_map m_ids; - mutable std::unordered_map m_parts; - mutable bool m_idsAssigned; - mutable std::unordered_map m_groupDataMap; - - std::string m_type; - std::string m_standardPrefix; - std::vector m_invalidPrefixes; - std::vector m_groupDataVec; - - ErrorHandler m_errorHandler; - }; - - using AssemblyDataType = std::string; - - template - struct AssemblyData : public EntityGroupData - { - using DataType = AssemblyDataType; - - void set_assembly_type(AssemblyType type_) { assemblyType = type_; } - AssemblyType get_assembly_type() const { return assemblyType; } - - private: - AssemblyType assemblyType = INVALID_ASSEMBLY; - }; - - template - class Assemblies : public EntityGroup> - { - public: - using BaseClass = EntityGroup>; - - Assemblies() - : EntityGroup>("ASSEMBLY", "ASSEMBLY_", - {"BLOCK_", "SURFACE_", "NODELIST_"}) - { - } - - bool is_cyclic(const std::string &assembly) const - { - initialize_graph(); - return check_for_cycle(assembly); - } - - bool is_cyclic() const - { - for (const std::string &assembly : BaseClass::get_part_names()) - if (is_cyclic(assembly)) { - return true; - } - - return false; - } - - std::vector &&get_forward_traversal_list(const std::string &assembly) const - { - initialize_graph(); - fill_traversal(assembly); - - return std::move(m_traversalList); - } - - std::vector &&get_reverse_traversal_list(const std::string &assembly) const - { - initialize_graph(); - fill_traversal(assembly); - std::reverse(m_traversalList.begin(), m_traversalList.end()); - - return std::move(m_traversalList); - } - - private: - void fill_traversal(const std::string &assembly) const - { - const AssemblyData *assemblyData = BaseClass::get_group_data(assembly); - if (nullptr != assemblyData) { - if (m_visitedNodes[assembly] == false) { - m_visitedNodes[assembly] = true; - m_traversalList.push_back(assembly); - - if (assemblyData->get_assembly_type() == AssemblyType::ASSEMBLY) { - for (const std::string &member : assemblyData->data) { - fill_traversal(member); - } - } - } - } - } - - bool check_for_cycle(const std::string &assembly) const - { - bool isCyclic = false; - const AssemblyData *assemblyData = BaseClass::get_group_data(assembly); - if (nullptr != assemblyData) { - if (m_visitedNodes[assembly] == true) { - isCyclic = true; - } - else { - m_visitedNodes[assembly] = true; - - if (assemblyData->get_assembly_type() == AssemblyType::ASSEMBLY) { - for (const std::string &member : assemblyData->data) { - isCyclic |= check_for_cycle(member); - } - } - } - } - return isCyclic; - } - - void initialize_graph() const - { - m_traversalList.clear(); - m_traversalList.reserve(BaseClass::size()); - - for (const std::string &name : BaseClass::get_part_names()) { - m_visitedNodes[name] = false; - } - } - - mutable std::unordered_map m_visitedNodes; - mutable std::vector m_traversalList; - }; - - template using NodesetDataType = EntityId; - - template - struct NodesetData : public EntityGroupData> - { - using DataType = NodesetDataType; - }; - - template - class Nodesets : public EntityGroup> - { - public: - Nodesets() - : EntityGroup>("NODESET", "NODELIST_", - {"BLOCK_", "SURFACE_", "ASSEMBLY_"}) - { - } - }; - - template using SidesetDataType = std::pair; - - template struct SidesetData; - - template class SidesetSplitter - { - public: - SidesetSplitter(SplitType splitType) : m_splitType(splitType) - { - ErrorHandler errorHandler = [](const std::ostringstream &errmsg) { - default_error_handler(errmsg); - }; - set_error_handler(errorHandler); - } - - SidesetSplitter() : m_splitType(INVALID_SPLIT) - { - ErrorHandler errorHandler = [](const std::ostringstream &errmsg) { - default_error_handler(errmsg); - }; - set_error_handler(errorHandler); - } - - void set_error_handler(ErrorHandler errorHandler) { m_errorHandler = errorHandler; } - - void split(const SidesetData &sideset, - const std::vector> &elementData) - { - m_splitMap.clear(); - m_sidesetName = sideset.name; - - if (get_split_type() == SplitType::TOPOLOGY) { - split_by_topology(sideset, elementData); - } - else if (get_split_type() == SplitType::ELEMENT_BLOCK) { - split_by_element_block(sideset, elementData); - } - else if (get_split_type() == SplitType::NO_SPLIT) { - split_by_no_split(sideset, elementData); - } - else { - std::ostringstream errmsg; - errmsg << "Invalid split type: " << get_split_type(); - m_errorHandler(errmsg); - } - - build_index_proc_map(sideset, elementData); - } - - std::vector get_side_block_info() const - { - std::vector infoVec; - infoVec.reserve(m_splitMap.size()); - - for (auto iter = m_splitMap.begin(); iter != m_splitMap.end(); iter++) { - const std::string &sideBlockName = iter->first; - SideBlockInfo info = get_side_block_info(sideBlockName); - infoVec.push_back(info); - } - return infoVec; - } - - std::vector get_indices_local_to_proc(const std::vector &index, - int proc) const - { - std::vector indexForProc; - indexForProc.reserve(index.size()); - - for (size_t elemPairIndex : index) { - if (is_index_local_to_proc(elemPairIndex, proc)) { - indexForProc.push_back(elemPairIndex); - } - } - - indexForProc.resize(indexForProc.size()); - return indexForProc; - } - - SideBlockInfo get_side_block_info(const std::string &name) const - { - SideBlockInfo info; - - auto iter = m_splitMap.find(name); - if (iter != m_splitMap.end()) { - const SplitData &splitData = iter->second; - - info.name = name; - info.parentName = splitData.sidesetName; - info.sideTopology = splitData.sideTopology; - info.elementTopology = splitData.elemTopology; - info.numNodesPerSide = splitData.sideNodeCount; - info.touchingBlock = splitData.touchingBlock; - info.sideIndex = splitData.index; - } - return info; - } - - SplitType get_split_type() const { return m_splitType; } - void set_split_type(SplitType inputSplitType) { m_splitType = inputSplitType; } - - private: - void build_index_proc_map(const SidesetData &sideset, - const std::vector> &elementData) - { - for (size_t i = 0; i < sideset.data.size(); ++i) { - const SidesetDataType &elemSidePair = sideset.data[i]; - EntityId elemId = elemSidePair.first; - - auto iter = bound_search(elementData.begin(), elementData.end(), elemId, - ElementDataLess()); - if (iter == elementData.end()) { - std::ostringstream errmsg; - errmsg << "Error! Sideset with id: " << sideset.id << " and name: " << sideset.name - << " has reference to invalid element '" << elemId << "'."; - m_errorHandler(errmsg); - } - - m_indexProcMap[i] = iter->proc; - } - } - - bool is_index_local_to_proc(size_t elemPairIndex, int proc) const - { - auto iter = m_indexProcMap.find(elemPairIndex); - - if (iter == m_indexProcMap.end()) { - std::ostringstream errmsg; - errmsg << "Sideset with name: " << m_sidesetName << " is referencing an invalid index " - << elemPairIndex; - m_errorHandler(errmsg); - } - - return iter->second == proc; - } - - struct SplitData - { - bool metaDataSet; - std::string sidesetName; - std::string touchingBlock; - std::string elemTopology; - std::string sideTopology; - int sideNodeCount; - std::vector index; - - SplitData() : metaDataSet(false), sideNodeCount(-1) {} - }; - - void fill_split_data(std::string key, size_t index, - const ElementData &elemData, int side) - { - convert_to_upper_case(key); - - SplitData &splitData = m_splitMap[key]; - - splitData.index.push_back(index); - - if (!splitData.metaDataSet) { - splitData.sidesetName = m_sidesetName; - splitData.elemTopology = elemData.topology.name(); - splitData.sideTopology = elemData.topology.side_topology_name(side); - splitData.sideNodeCount = elemData.topology.side_topology_num_nodes(side); - - if (get_split_type() == ELEMENT_BLOCK) { - splitData.touchingBlock = elemData.partName; - } - - splitData.metaDataSet = true; - } - } - - using Criterion = - std::function &sideset, - const ElementData &elemData, int side)>; - - void split_by_criterion(const SidesetData &sideset, - const std::vector> &elementData, - Criterion criterion) - { - for (size_t index = 0; index < sideset.data.size(); ++index) { - const SidesetDataType &elemSidePair = sideset.data[index]; - EntityId elemId = elemSidePair.first; - int side = elemSidePair.second; - - auto iter = bound_search(elementData.begin(), elementData.end(), elemId, - ElementDataLess()); - if (iter == elementData.end()) { - std::ostringstream errmsg; - errmsg << "Error! Sideset with id: " << sideset.id << " and name: " << sideset.name - << " has reference to invalid element '" << elemId << "'."; - m_errorHandler(errmsg); - } - - std::string key = criterion(sideset, *iter, side); - fill_split_data(key, index, *iter, side); - } - } - - void split_by_topology(const SidesetData &sideset, - const std::vector> &elementData) - { - Criterion criterion = [](const SidesetData &sideSet, - const ElementData &elemData, int side) { - if (sideSet.has_standard_name()) { - return "SURFACE_" + elemData.topology.name() + "_" + - elemData.topology.side_topology_name(side) + "_" + std::to_string(sideSet.id); - } - return sideSet.name + "_" + elemData.topology.name() + "_" + - elemData.topology.side_topology_name(side); - }; - - split_by_criterion(sideset, elementData, criterion); - } - - void split_by_element_block(const SidesetData &sideset, - const std::vector> &elementData) - { - Criterion criterion = [](const SidesetData &sideSet, - const ElementData &elemData, int side) { - if (sideSet.has_standard_name()) { - return "SURFACE_" + elemData.partName + "_" + - elemData.topology.side_topology_name(side) + "_" + std::to_string(sideSet.id); - } - return sideSet.name + "_" + elemData.partName + "_" + - elemData.topology.side_topology_name(side); - }; - - split_by_criterion(sideset, elementData, criterion); - } - - void split_by_no_split(const SidesetData &sideset, - const std::vector> &elementData) - { - std::vector splitIndex(sideset.data.size()); - std::iota(std::begin(splitIndex), std::end(splitIndex), 0); - SplitData &splitData = m_splitMap[sideset.name]; - - splitData.index = splitIndex; - splitData.sidesetName = m_sidesetName; - splitData.elemTopology = "unknown"; - splitData.sideTopology = "unknown"; - splitData.sideNodeCount = -1; - splitData.metaDataSet = true; - } - - SplitType m_splitType; - std::string m_sidesetName; - - std::unordered_map m_indexProcMap; - std::unordered_map m_splitMap; - ErrorHandler m_errorHandler; - }; - - template - struct SidesetData : public EntityGroupData> - { - using DataType = SidesetDataType; - using BaseClass = EntityGroupData>; - - void set_split_type(SplitType splitType) { sidesetSplitter.set_split_type(splitType); } - SplitType get_split_type() const { return sidesetSplitter.get_split_type(); } - - void set_error_handler(ErrorHandler errorHandler) - { - sidesetSplitter.set_error_handler(errorHandler); - } - - void split(const std::vector> &elementData) - { - sidesetSplitter.split(*this, elementData); - } - - std::vector get_sideblock_indices_local_to_proc(const SideBlockInfo &info, - int proc) const - { - return sidesetSplitter.get_indices_local_to_proc(info.sideIndex, proc); - } - - SideBlockInfo get_side_block_info(const std::string &sideBlockName) const - { - return sidesetSplitter.get_side_block_info(sideBlockName); - } - - std::vector get_side_block_info() const - { - return sidesetSplitter.get_side_block_info(); - } - - bool has_standard_name() const - { - if (BaseClass::has_name()) { - std::pair result = get_id_from_part_name(BaseClass::name, "SURFACE_"); - return result.second; - } - - return false; - } - - private: - SidesetSplitter sidesetSplitter; - }; - - template - class Sidesets : public EntityGroup> - { - public: - using BaseClass = EntityGroup>; - - Sidesets() : BaseClass("SIDESET", "SURFACE_", {"BLOCK_", "NODELIST_", "ASSEMBLY_"}) {} - - void set_error_handler(ErrorHandler errorHandler) override - { - BaseClass::set_error_handler(errorHandler); - - for (SidesetData &sidesetData : BaseClass::m_groupDataVec) { - sidesetData.set_error_handler(errorHandler); - } - } - - void finalize_parse(const std::vector> &elementData) - { - BaseClass::finalize_parse(); - - for (SidesetData &sidesetData : BaseClass::m_groupDataVec) { - sidesetData.split(elementData); - } - } - }; - - template struct TextMeshData - { - unsigned spatialDim; - std::vector> elementDataVec; - PartIdMapping partIds; - std::set nodeIds; - Coordinates coords; - Sidesets sidesets; - Nodesets nodesets; - Assemblies assemblies; - - TextMeshData() : spatialDim(0) {} - - void add_element(const ElementData &elem) - { - elementDataVec.push_back(elem); - for (const EntityId &nodeId : elem.nodeIds) { - nodeIds.insert(nodeId); - associate_node_with_proc(nodeId, elem.proc); - } - } - - const std::set &nodes_on_proc(int proc) const - { - auto it = m_nodesOnProc.find(proc); - return it != m_nodesOnProc.end() ? it->second : m_emptyNodes; - } - - unsigned num_nodes_on_proc(int proc) const - { - auto it = m_nodesOnProc.find(proc); - return it != m_nodesOnProc.end() ? it->second.size() : 0; - } - - const std::set &procs_for_node(const EntityId nodeId) const - { - auto it = m_procsForNode.find(nodeId); - return it != m_procsForNode.end() ? it->second : m_emptyProcs; - } - - private: - void associate_node_with_proc(const EntityId nodeId, int proc) - { - m_procsForNode[nodeId].insert(proc); - m_nodesOnProc[proc].insert(nodeId); - } - - std::unordered_map> m_procsForNode; - std::unordered_map> m_nodesOnProc; - - std::set m_emptyProcs; - std::set m_emptyNodes; - }; - - class TextMeshLexer - { - public: - TextMeshLexer() : m_currentIndex(0), m_token(""), m_isNumber(false) {} - - void set_input_string(const std::string &input) - { - m_input = input; - m_currentIndex = 0; - read_next_token(); - } - - int get_int() - { - read_next_token(); - return std::stoi(m_oldToken); - } - - unsigned get_unsigned() - { - read_next_token(); - return std::stoul(m_oldToken); - } - - std::string get_string() - { - read_next_token(); - return make_upper_case(m_oldToken); - } - - void get_newline() { read_next_token(); } - - bool has_token() const { return m_token != ""; } - bool has_newline() const { return m_token == "\n"; } - bool has_number() const { return has_token() && m_isNumber; } - bool has_string() const { return has_token() && !has_number() && !has_newline(); } - - private: - void read_next_token() - { - m_oldToken = m_token; - - if (char_is_newline()) { - m_isNumber = false; - m_token = "\n"; - m_currentIndex++; - return; - } - - m_token = ""; - m_isNumber = true; - - while (has_more_input()) { - if (char_is_whitespace()) { - m_currentIndex++; - continue; - } - - if (char_is_comma()) { - m_currentIndex++; - break; - } - - if (char_is_newline()) { - break; - } - - m_isNumber &= char_is_digit(); - m_token += current_char(); - m_currentIndex++; - } - } - - bool has_more_input() { return m_currentIndex < m_input.size(); } - - bool char_is_whitespace() { return current_char() == ' '; } - bool char_is_comma() { return current_char() == ','; } - bool char_is_newline() { return current_char() == '\n'; } - bool char_is_digit() { return std::isdigit(static_cast(current_char())); } - - char current_char() { return m_input[m_currentIndex]; } - - std::string make_upper_case(std::string str) - { - std::transform(str.begin(), str.end(), str.begin(), ::toupper); - return str; - } - - std::string m_input; - unsigned m_currentIndex; - - std::string m_oldToken; - std::string m_token; - - bool m_isNumber; - }; - - template class SidesetParser - { - public: - SidesetParser() : m_splitType(NO_SPLIT) - { - ErrorHandler errorHandler = [](const std::ostringstream &errmsg) { - default_error_handler(errmsg); - }; - set_error_handler(errorHandler); - } - - void set_error_handler(ErrorHandler errorHandler) { m_errorHandler = errorHandler; } - - std::string get_name() { return m_name; } - - const std::vector> &get_sideset_data() { return m_elemSidePairs; } - - SplitType get_split_type() { return m_splitType; } - - void parse(const std::string &parseData) - { - auto options = get_tokens(parseData, ";"); - - for (const auto &option : options) { - parse_option_group(option); - } - } - - private: - void parse_option(std::string optionName, const std::string &optionValue) - { - convert_to_lower_case(optionName); - - if (optionName == "name") { - parse_name(optionValue); - } - else if (optionName == "data") { - parse_element_side_pairs(optionValue); - } - else if (optionName == "split") { - parse_split_type(optionValue); - } - else { - std::ostringstream errmsg; - errmsg << "Unrecognized sideset option: " << optionName; - m_errorHandler(errmsg); - } - } - - void parse_option_group(const std::string &option) - { - if (!option.empty()) { - auto optionTokens = get_tokens(option, "="); - - if (optionTokens.size() != 2) { - std::ostringstream errmsg; - errmsg << "Unrecognized sideset option: " << option; - m_errorHandler(errmsg); - } - - parse_option(optionTokens[0], optionTokens[1]); - } - } - - void parse_name(const std::string &data) { m_name = data; } - - void parse_element_side_pairs(const std::string &data) - { - auto sidesetData = get_tokens(data, ","); - - if (sidesetData.size() % 2 != 0) { - std::ostringstream errmsg; - errmsg << "Unmatched element/ordinal pairs in sideset data: " << data; - m_errorHandler(errmsg); - } - - for (unsigned i = 0; i < sidesetData.size(); i += 2) { - EntityId elem = std::stoull(sidesetData[i]); - int side = std::stoi(sidesetData[i + 1]); - - if (side <= 0) { - std::ostringstream errmsg; - errmsg << "Invalid element/ordinal pair {" << sidesetData[i] << "," - << sidesetData[i + 1] << "}"; - m_errorHandler(errmsg); - } - - m_elemSidePairs.push_back(std::make_pair(elem, side)); - } - } - - void parse_split_type(std::string splitName) - { - convert_to_lower_case(splitName); - - if (splitName == "none") { - m_splitType = NO_SPLIT; - } - else if (splitName == "block") { - m_splitType = ELEMENT_BLOCK; - } - else if (splitName == "topology") { - m_splitType = TOPOLOGY; - } - else { - std::ostringstream errmsg; - errmsg << "Unrecognized sideset split type: " << splitName; - m_errorHandler(errmsg); - } - } - - std::vector> m_elemSidePairs; - std::string m_name; - SplitType m_splitType; - ErrorHandler m_errorHandler; - }; - - template class NodesetParser - { - public: - NodesetParser() - { - ErrorHandler errorHandler = [](const std::ostringstream &errmsg) { - default_error_handler(errmsg); - }; - set_error_handler(errorHandler); - } - - void set_error_handler(ErrorHandler errorHandler) { m_errorHandler = errorHandler; } - - std::string get_name() { return m_name; } - - const std::vector &get_nodeset_data() { return m_nodeList; } - - void parse(const std::string &parseData) - { - auto options = get_tokens(parseData, ";"); - - for (const auto &option : options) { - parse_option_group(option); - } - } - - private: - void parse_option(std::string optionName, const std::string &optionValue) - { - convert_to_lower_case(optionName); - - if (optionName == "name") { - parse_name(optionValue); - } - else if (optionName == "data") { - parse_node_data(optionValue); - } - else { - std::ostringstream errmsg; - errmsg << "Unrecognized nodeset option: " << optionName; - m_errorHandler(errmsg); - } - } - - void parse_option_group(const std::string &option) - { - if (!option.empty()) { - auto optionTokens = get_tokens(option, "="); - - if (optionTokens.size() != 2) { - std::ostringstream errmsg; - errmsg << "Unrecognized nodeset option: " << option; - m_errorHandler(errmsg); - } - - parse_option(optionTokens[0], optionTokens[1]); - } - } - - void parse_name(const std::string &data) { m_name = data; } - - void parse_node_data(const std::string &data) - { - auto nodesetData = get_tokens(data, ","); - - for (const std::string &nodeString : nodesetData) { - if (!is_number(nodeString)) { - std::ostringstream errmsg; - errmsg << "Urecognized nodeset node id: " << nodeString; - m_errorHandler(errmsg); - } - EntityId node = std::stoull(nodeString); - m_nodeList.push_back(node); - } - } - - std::vector m_nodeList; - std::string m_name; - ErrorHandler m_errorHandler; - }; - - class AssemblyParser - { - public: - AssemblyParser() : m_assemblyType(INVALID_ASSEMBLY) - { - ErrorHandler errorHandler = [](const std::ostringstream &errmsg) { - default_error_handler(errmsg); - }; - set_error_handler(errorHandler); - } - - void set_error_handler(ErrorHandler errorHandler) { m_errorHandler = errorHandler; } - - std::string get_name() { return m_name; } - - AssemblyType get_assembly_type() const { return m_assemblyType; } - - const std::vector &get_assembly_data() { return m_members; } - - void parse(const std::string &parseData) - { - auto options = get_tokens(parseData, ";"); - - for (const auto &option : options) { - parse_option_group(option); - } - } - - private: - void parse_option(std::string optionName, const std::string &optionValue) - { - convert_to_lower_case(optionName); - - if (optionName == "name") { - parse_name(optionValue); - } - else if (optionName == "type") { - parse_assembly_type(optionValue); - } - else if (optionName == "member") { - parse_assembly_members(optionValue); - } - else { - std::ostringstream errmsg; - errmsg << "Unrecognized assembly option: " << optionName; - m_errorHandler(errmsg); - } - } - - void parse_option_group(const std::string &option) - { - if (!option.empty()) { - auto optionTokens = get_tokens(option, "="); - - if (optionTokens.size() != 2) { - std::ostringstream errmsg; - errmsg << "Unrecognized assembly option: " << option; - m_errorHandler(errmsg); - } - - parse_option(optionTokens[0], optionTokens[1]); - } - } - - void parse_name(const std::string &data) { m_name = data; } - - void parse_assembly_type(std::string type) - { - convert_to_lower_case(type); - - if (type == "assembly") { - m_assemblyType = ASSEMBLY; - } - else if (type == "block") { - m_assemblyType = BLOCK; - } - else if (type == "sideset") { - m_assemblyType = SIDESET; - } - else if (type == "nodeset") { - m_assemblyType = NODESET; - } - else { - std::ostringstream errmsg; - errmsg << "Unrecognized assembly type: " << type; - m_errorHandler(errmsg); - } - } - - void parse_assembly_members(const std::string &data) - { - std::vector assemblyData = get_tokens(data, ","); - for (std::string &member : assemblyData) { - convert_to_upper_case(member); - } - - m_members = assemblyData; - } - - std::vector m_members; - std::string m_name; - AssemblyType m_assemblyType; - ErrorHandler m_errorHandler; - }; - - template class TextMeshOptionParser - { - private: - static constexpr int INVALID_DIMENSION = -1; - static constexpr int DEFAULT_DIMENSION = 3; - - enum ParsedOptions { - PARSED_NONE = 0, - PARSED_DIMENSION = 1L << 0, - PARSED_COORDINATES = 1L << 1, - PARSED_SIDESET = 1L << 2, - PARSED_NODESET = 1L << 3, - PARSED_ASSEMBLY = 1L << 4 - }; - - public: - TextMeshOptionParser(TextMeshData &data, unsigned enforcedDimension) - : m_parsedOptionMask(PARSED_NONE), m_parsedDimension(INVALID_DIMENSION), - m_constructorEnforcedDimension(enforcedDimension), m_data(data) - { - } - - TextMeshOptionParser(TextMeshData &data) - : m_parsedOptionMask(PARSED_NONE), m_parsedDimension(INVALID_DIMENSION), - m_constructorEnforcedDimension(INVALID_DIMENSION), m_data(data) - { - } - - void set_error_handler(ErrorHandler errorHandler) { m_errorHandler = errorHandler; } - - std::string get_mesh_connectivity_description() const - { - return m_meshConnectivityDescription; - } - - void initialize_parse(const std::string ¶meters) - { - if (!parameters.empty()) { - std::vector optionGroups = get_tokens(parameters, "|"); - parse_options(optionGroups); - - m_meshConnectivityDescription = optionGroups[0]; - } - - validate_dimension(); - set_dimension(); - } - - void finalize_parse() - { - set_coordinates(); - m_data.partIds.finalize_parse(); - m_data.sidesets.finalize_parse(m_data.elementDataVec); - m_data.nodesets.finalize_parse(); - m_data.assemblies.finalize_parse(); - validate_sidesets(); - validate_nodesets(); - validate_assemblies(); - } - - private: - bool parsed_dimension_provided() { return m_parsedOptionMask & PARSED_DIMENSION; } - - bool enforced_dimension_provided() - { - return m_constructorEnforcedDimension != INVALID_DIMENSION; - } - - void validate_dimension() - { - if (enforced_dimension_provided()) { - if (parsed_dimension_provided() && m_constructorEnforcedDimension != m_parsedDimension) { - std::ostringstream errmsg; - errmsg << "Error! An enforced dimension of " << m_constructorEnforcedDimension - << " was provided but does not match the parsed value of " << m_parsedDimension - << "."; - m_errorHandler(errmsg); - } - } - } - - void set_dimension() - { - if (enforced_dimension_provided()) { - m_data.spatialDim = m_constructorEnforcedDimension; - } - else if (parsed_dimension_provided()) { - m_data.spatialDim = m_parsedDimension; - } - else { - m_data.spatialDim = DEFAULT_DIMENSION; - } - } - - void parse_dimension_option(const std::vector &option) - { - if (parsed_dimension_provided()) { - std::ostringstream errmsg; - errmsg << "Spatial dimension has already been parsed! Check syntax."; - m_errorHandler(errmsg); - } - - if (option.size() == 2) { - m_parsedDimension = std::stoull(option[1]); - if (m_parsedDimension != 2 && m_parsedDimension != 3) { - std::ostringstream errmsg; - errmsg << "Error! Parsed spatial dimension (" << m_parsedDimension - << " not defined to be 2 or 3."; - m_errorHandler(errmsg); - } - - m_parsedOptionMask |= PARSED_DIMENSION; - } - else { - std::ostringstream errmsg; - errmsg << "Error! Invalid spatial dimension syntax."; - m_errorHandler(errmsg); - } - } - - void deallocate_raw_coordinates() - { - std::vector swapVectorForDeallocation; - m_rawCoordinates.swap(swapVectorForDeallocation); - } - - void set_coordinates() - { - if (parsed_coordinates_provided()) { - m_data.coords.set_coordinate_data(m_data.spatialDim, m_data.nodeIds, m_rawCoordinates); - deallocate_raw_coordinates(); - } - } - - bool parsed_coordinates_provided() { return m_parsedOptionMask & PARSED_COORDINATES; } - - void parse_coordinates_option(const std::vector &coordinatesOptionGroup) - { - if (parsed_coordinates_provided()) { - std::ostringstream errmsg; - errmsg << "Coordinates have already been parsed! Check syntax."; - m_errorHandler(errmsg); - } - - if (coordinatesOptionGroup.size() > 1) { - const std::vector &coordinateTokens = - get_tokens(coordinatesOptionGroup[1], ","); - m_rawCoordinates.reserve(coordinateTokens.size()); - for (const auto &token : coordinateTokens) { - double coord = std::stod(token); - m_rawCoordinates.push_back(coord); - } - - m_parsedOptionMask |= PARSED_COORDINATES; - } - } - - template - void - check_name_collision_with_entity_sets(const EntityGroupData &groupData, - const std::string &entityType, - const std::set &entitySetNames) - { - std::string groupName = groupData.name; - convert_to_upper_case(groupName); - - if (entitySetNames.count(groupName) > 0) { - std::ostringstream errmsg; - errmsg << "Error! " << groupData.type << " with id: " << groupData.id - << " and name: " << groupData.name << " is referencing " << entityType - << " with same name."; - m_errorHandler(errmsg); - } - } - - template - void check_name_collision_with_group(const SrcDataGroup &srcGroup, - const DestDataGroup &destGroup) - { - std::set groupNames = transform_to_set(destGroup.get_part_names()); - - for (const auto &srcGroupData : srcGroup.get_group_data()) { - check_name_collision_with_entity_sets(srcGroupData, destGroup.get_group_type(), - groupNames); - } - } - - void check_sideset_element_reference() - { - for (const SidesetData &sidesetData : - m_data.sidesets.get_group_data()) { - for (const std::pair &elemSidePair : sidesetData.data) { - EntityId id = elemSidePair.first; - if (!std::binary_search(m_data.elementDataVec.begin(), m_data.elementDataVec.end(), - id)) { - std::ostringstream errmsg; - errmsg << "Error! Sideset with id: " << sidesetData.id - << " and name: " << sidesetData.name << " has reference to invalid element '" - << id << "'."; - m_errorHandler(errmsg); - } - } - } - } - - void check_sideset_name_collision() - { - check_name_collision_with_group(m_data.sidesets, m_data.partIds); - check_name_collision_with_group(m_data.sidesets, m_data.nodesets); - check_name_collision_with_group(m_data.sidesets, m_data.assemblies); - } - - void validate_sidesets() - { - check_sideset_element_reference(); - check_sideset_name_collision(); - } - - void check_nodeset_node_reference() - { - for (const NodesetData &nodesetData : m_data.nodesets.get_group_data()) { - for (const EntityId nodeId : nodesetData.data) { - if (m_data.nodeIds.count(nodeId) == 0) { - std::ostringstream errmsg; - errmsg << "Error! Nodeset with id: " << nodesetData.id - << " and name: " << nodesetData.name << " has reference to invalid node '" - << nodeId << "'."; - m_errorHandler(errmsg); - } - } - } - } - - void check_nodeset_name_collision() - { - check_name_collision_with_group(m_data.nodesets, m_data.partIds); - check_name_collision_with_group(m_data.nodesets, m_data.sidesets); - check_name_collision_with_group(m_data.nodesets, m_data.assemblies); - } - - void validate_nodesets() - { - check_nodeset_node_reference(); - check_nodeset_name_collision(); - } - - template - void check_assembly_member_reference_in_group(const AssemblyData &assemblyData, - const T &group) - { - for (const std::string &entry : assemblyData.data) { - if (!group.is_registered(entry)) { - std::ostringstream errmsg; - errmsg << "Error! Assembly with id: " << assemblyData.id - << " and name: " << assemblyData.name << " has reference to invalid " - << group.get_group_type() << " '" << entry << "'."; - m_errorHandler(errmsg); - } - } - } - - void check_assembly_member_reference() - { - for (const AssemblyData &assemblyData : m_data.assemblies.get_group_data()) { - const AssemblyType assemblyType = assemblyData.get_assembly_type(); - - switch (assemblyType) { - case AssemblyType::BLOCK: - check_assembly_member_reference_in_group(assemblyData, m_data.partIds); - break; - case AssemblyType::SIDESET: - check_assembly_member_reference_in_group(assemblyData, m_data.sidesets); - break; - case AssemblyType::NODESET: - check_assembly_member_reference_in_group(assemblyData, m_data.nodesets); - break; - case AssemblyType::ASSEMBLY: - check_assembly_member_reference_in_group(assemblyData, m_data.assemblies); - break; - default: - std::ostringstream errmsg; - errmsg << "Error! Assembly with id: " << assemblyData.id - << " and name: " << assemblyData.name << " does not have a valid assembly type '" - << assemblyType << "'."; - m_errorHandler(errmsg); - } - } - } - - void check_assembly_name_collision() - { - check_name_collision_with_group(m_data.assemblies, m_data.partIds); - check_name_collision_with_group(m_data.assemblies, m_data.sidesets); - check_name_collision_with_group(m_data.assemblies, m_data.nodesets); - } - - void check_assembly_cyclic_dependency() - { - for (const std::string &assembly : m_data.assemblies.get_part_names()) { - if (m_data.assemblies.is_cyclic(assembly)) { - std::ostringstream errmsg; - errmsg << "Error! Assembly with name: '" << assembly << "' has a cyclic dependency."; - m_errorHandler(errmsg); - } - } - } - - void validate_assemblies() - { - check_assembly_member_reference(); - check_assembly_name_collision(); - check_assembly_cyclic_dependency(); - } - - void parse_sideset_option(const std::vector &sidesetOptionGroup) - { - if (sidesetOptionGroup.size() > 1) { - SidesetParser parser; - parser.set_error_handler(m_errorHandler); - parser.parse(sidesetOptionGroup[1]); - - SidesetData *sideset = - m_data.sidesets.add_group_data(parser.get_name(), parser.get_sideset_data()); - sideset->set_split_type(parser.get_split_type()); - m_parsedOptionMask |= PARSED_SIDESET; - } - } - - void parse_nodeset_option(const std::vector &nodesetOptionGroup) - { - if (nodesetOptionGroup.size() > 1) { - NodesetParser parser; - parser.set_error_handler(m_errorHandler); - parser.parse(nodesetOptionGroup[1]); - - m_data.nodesets.add_group_data(parser.get_name(), parser.get_nodeset_data()); - m_parsedOptionMask |= PARSED_NODESET; - } - } - - void parse_assembly_option(const std::vector &assemblyOptionGroup) - { - if (assemblyOptionGroup.size() > 1) { - AssemblyParser parser; - parser.set_error_handler(m_errorHandler); - parser.parse(assemblyOptionGroup[1]); - - AssemblyData *assembly = - m_data.assemblies.add_group_data(parser.get_name(), parser.get_assembly_data()); - assembly->set_assembly_type(parser.get_assembly_type()); - m_parsedOptionMask |= PARSED_ASSEMBLY; - } - } - - void print_help_message(std::ostream &out = std::cout) - { - out << "\nValid Options for TextMesh parameter string:\n" - "\tPROC_ID,ELEM_ID,TOPOLOGY,{NODE CONNECTIVITY LIST}[,PART_NAME[,PART_ID]] " - "(specifies " - "element list .. first " - "argument)\n" - "\t|coordinates:x_1,y_1[,z_1], x_2,y_2[,z_2], ...., x_n,y_n[,z_n] (specifies " - "coordinate data)\n" - "\t|sideset:[name=;] data=elem_1,side_1,elem_2,side_2,....,elem_n,side_n; " - "[split=;] " - "(specifies sideset data)\n" - "\t|nodeset:[name=;] data=node_1,node_2,....,node_n (specifies nodeset data)\n" - "\t|assembly:[name=;] type=; " - "member=member_1,...,member_n (specifies assembly hierarchy)\n" - "\t|dimension:spatialDimension (specifies spatial dimension .. default is 3)\n" - "\t|help -- show this list\n\n"; - } - - void handle_unrecognized_option(const std::string &optionType) - { - std::ostringstream errmsg; - fmt::print(errmsg, "ERROR: Unrecognized option '{}'. It will be ignored.\n", optionType); - m_errorHandler(errmsg); - } - - void parse_options(const std::vector &optionGroups) - { - for (size_t i = 1; i < optionGroups.size(); i++) { - std::vector optionGroup = get_tokens(optionGroups[i], ":"); - std::string optionType = optionGroup[0]; - convert_to_lower_case(optionType); - - if (optionType == "coordinates") { - parse_coordinates_option(optionGroup); - } - else if (optionType == "dimension") { - parse_dimension_option(optionGroup); - } - else if (optionType == "sideset") { - parse_sideset_option(optionGroup); - } - else if (optionType == "nodeset") { - parse_nodeset_option(optionGroup); - } - else if (optionType == "assembly") { - parse_assembly_option(optionGroup); - } - else if (optionType == "help") { - print_help_message(); - } - else { - handle_unrecognized_option(optionType); - } - } - } - - unsigned long m_parsedOptionMask; - - int m_parsedDimension; - int m_constructorEnforcedDimension; - - std::string m_meshConnectivityDescription; - - std::vector m_rawCoordinates; - ErrorHandler m_errorHandler; - - TextMeshData &m_data; - }; - - template class TextMeshParser - { - private: - using Topology = typename TopologyMapping::Topology; - - public: - explicit TextMeshParser(unsigned enforcedDimension) - : m_optionParser(m_data, enforcedDimension) - { - initialize_constructor(); - } - - TextMeshParser() : m_optionParser(m_data) { initialize_constructor(); } - - TextMeshData parse(const std::string &meshDescription) - { - initialize_parse(meshDescription); - parse_description(); - finalize_parse(); - return m_data; - } - - void set_error_handler(ErrorHandler errorHandler) - { - m_errorHandler = errorHandler; - m_data.partIds.set_error_handler(errorHandler); - m_data.coords.set_error_handler(errorHandler); - m_data.sidesets.set_error_handler(errorHandler); - m_data.nodesets.set_error_handler(errorHandler); - m_data.assemblies.set_error_handler(errorHandler); - m_optionParser.set_error_handler(errorHandler); - } - - private: - void initialize_constructor() - { - ErrorHandler errorHandler = [](const std::ostringstream &errmsg) { - default_error_handler(errmsg); - }; - set_error_handler(errorHandler); - m_topologyMapping.initialize_topology_map(); - } - - void initialize_connectivity_parse(const std::string &meshDescription) - { - m_lexer.set_input_string(meshDescription); - m_lineNumber = 1; - validate_required_field(m_lexer.has_token()); - } - - void initialize_parse(const std::string &meshDescription) - { - m_optionParser.initialize_parse(meshDescription); - initialize_connectivity_parse(m_optionParser.get_mesh_connectivity_description()); - } - - void finalize_parse() { m_optionParser.finalize_parse(); } - - void parse_description() - { - while (m_lexer.has_token()) { - ElementData elemData = parse_element(); - m_data.add_element(elemData); - - validate_no_extra_fields(); - parse_newline(); - } - - std::sort(m_data.elementDataVec.begin(), m_data.elementDataVec.end(), - ElementDataLess()); - } - - ElementData parse_element() - { - ElementData elem; - elem.proc = parse_proc_id(); - elem.identifier = parse_elem_id(); - elem.topology = parse_topology(); - elem.nodeIds = parse_node_ids(elem.topology); - elem.partName = parse_part(elem.topology); - return elem; - } - - int parse_proc_id() - { - validate_required_field(m_lexer.has_number()); - return parse_int(); - } - - EntityId parse_elem_id() - { - validate_required_field(m_lexer.has_number()); - return parse_unsigned(); - } - - Topology parse_topology() - { - validate_required_field(m_lexer.has_string()); - std::string topologyName = parse_string(); - - Topology topology = m_topologyMapping.topology(topologyName); - validate_topology(topology, topologyName); - - return topology; - } - - std::vector parse_node_ids(const Topology &topology) - { - std::vector nodeIds; - while (m_lexer.has_number()) { - nodeIds.push_back(parse_unsigned()); - } - validate_node_count(topology, nodeIds.size()); - return nodeIds; - } - - std::string parse_part(const Topology &topology) - { - std::string partName; - - if (m_lexer.has_string()) { - partName = parse_string(); - } - else { - partName = "block_" + topology.name(); - } - - if (m_lexer.has_number()) { - unsigned partId = parse_unsigned(); - m_data.partIds.register_part_name_with_id(partName, partId); - } - else { - m_data.partIds.register_part_name(partName); - } - - return partName; - } - - int parse_int() { return m_lexer.get_int(); } - unsigned parse_unsigned() { return m_lexer.get_unsigned(); } - std::string parse_string() { return m_lexer.get_string(); } - - void parse_newline() - { - m_lexer.get_newline(); - m_lineNumber++; - } - - void validate_required_field(bool hasNextRequiredField) - { - if (!hasNextRequiredField) { - std::ostringstream errmsg; - errmsg - << "Error! Each line must contain the following fields (with at least one node): " - "Processor, GlobalId, Element Topology, NodeIds. Error on line " - << m_lineNumber << "."; - m_errorHandler(errmsg); - } - } - - void validate_no_extra_fields() - { - bool requiredCondition = !m_lexer.has_token() || m_lexer.has_newline(); - if (!requiredCondition) { - std::ostringstream errmsg; - errmsg << "Error! Each line should not contain more than the following fields (with at " - "least one node): " - "Processor, GlobalId, Element Topology, NodeIds, Part Name, PartId. " - "Error on line " - << m_lineNumber << "."; - m_errorHandler(errmsg); - } - } - - void validate_topology(const Topology &topology, const std::string &providedName) - { - if (topology == m_topologyMapping.invalid_topology()) { - std::ostringstream errmsg; - errmsg << "Error! Topology = >>" << providedName << "<< is invalid from line " - << m_lineNumber << "."; - m_errorHandler(errmsg); - } - - if (!topology.defined_on_spatial_dimension(m_data.spatialDim)) { - std::ostringstream errmsg; - errmsg << "Error on input line " << m_lineNumber << ". Topology = " << topology - << " is not defined on spatial dimension = " << m_data.spatialDim - << " set in parser."; - m_errorHandler(errmsg); - } - } - - void validate_node_count(const Topology &topology, size_t numNodes) - { - size_t numTopologyNodes = topology.num_nodes(); - if (numNodes != numTopologyNodes) { - std::ostringstream errmsg; - errmsg << "Error! The input line appears to contain " << numNodes - << " nodes, but the topology " << topology << " needs " << numTopologyNodes - << " nodes on line " << m_lineNumber << "."; - m_errorHandler(errmsg); - } - } - - unsigned m_lineNumber = 0; - TextMeshData m_data; - TextMeshLexer m_lexer; - TopologyMapping m_topologyMapping; - - ErrorHandler m_errorHandler; - - TextMeshOptionParser m_optionParser; - }; - - } // namespace text_mesh -} // namespace Iotm -- GitLab From 6cee88fa3e2c53900b673b3be523704c024eab93 Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Mon, 25 Apr 2022 16:24:53 -0400 Subject: [PATCH 0036/1015] vtkGradientFilter becomes ghost aware for structured data inputs Hidden cells and hidden ghosts are now skipped in `vtkGradientFilter` in the structured data input version. --- .../Testing/Cxx/TestGradientAndVorticity.cxx | 139 +++++++ Filters/General/vtkGradientFilter.cxx | 374 ++++++++++-------- Filters/General/vtkGradientFilter.h | 7 +- 3 files changed, 350 insertions(+), 170 deletions(-) diff --git a/Filters/General/Testing/Cxx/TestGradientAndVorticity.cxx b/Filters/General/Testing/Cxx/TestGradientAndVorticity.cxx index 83cef76279ff..dc2d487a569e 100644 --- a/Filters/General/Testing/Cxx/TestGradientAndVorticity.cxx +++ b/Filters/General/Testing/Cxx/TestGradientAndVorticity.cxx @@ -18,6 +18,7 @@ ----------------------------------------------------------------------------*/ #include "vtkCell.h" +#include "vtkCellCenters.h" #include "vtkCellData.h" #include "vtkCellType.h" #include "vtkCellTypeSource.h" @@ -29,16 +30,25 @@ #include "vtkHigherOrderHexahedron.h" #include "vtkHigherOrderQuadrilateral.h" #include "vtkHigherOrderWedge.h" +#include "vtkIOSSReader.h" +#include "vtkImageData.h" #include "vtkNew.h" +#include "vtkPartitionedDataSet.h" +#include "vtkPartitionedDataSetCollection.h" #include "vtkPointData.h" +#include "vtkPointDataToCellData.h" +#include "vtkResampleToImage.h" #include "vtkSmartPointer.h" #include "vtkStdString.h" +#include "vtkStructuredData.h" #include "vtkStructuredGrid.h" #include "vtkStructuredGridReader.h" +#include "vtkThreshold.h" #include "vtkTransformFilter.h" #include "vtkUnstructuredGrid.h" #include "vtkUnstructuredGridReader.h" +#include #include #define VTK_CREATE(type, var) vtkSmartPointer var = vtkSmartPointer::New() @@ -424,6 +434,65 @@ int TestGradient(int* cellTypes, vtkGeneralTransform* transform) return EXIT_SUCCESS; } +//------------------------------------------------------------------------------ +int TestPoints(vtkImageData* grid, vtkUnstructuredGrid* ref) +{ + auto gridArray = vtkArrayDownCast(grid->GetPointData()->GetAbstractArray("Pres")); + auto refArray = vtkArrayDownCast(ref->GetPointData()->GetAbstractArray("Pres")); + double refPoint[3]; + double bounds[6]; + int extent[6]; + grid->GetBounds(bounds); + grid->GetExtent(extent); + int width[3]; + vtkStructuredData::GetDimensionsFromExtent(extent, width); + int ijk[3]; + for (vtkIdType pointId = 0; pointId < ref->GetNumberOfPoints(); ++pointId) + { + ref->GetPoint(pointId, refPoint); + ijk[0] = (refPoint[0] - bounds[0]) / (bounds[1] - bounds[0]) * width[0]; + ijk[1] = (refPoint[1] - bounds[2]) / (bounds[3] - bounds[2]) * width[1]; + ijk[2] = (refPoint[2] - bounds[4]) / (bounds[5] - bounds[4]) * width[2]; + vtkIdType gridPointId = vtkStructuredData::ComputePointId(width, ijk); + + if (std::abs(gridArray->GetValue(gridPointId) - refArray->GetValue(pointId)) > 1e-6) + { + vtkGenericWarningMacro("Computing gradient on a grid with hidden points failed"); + return EXIT_FAILURE; + } + } + return EXIT_SUCCESS; +} + +//------------------------------------------------------------------------------ +int TestCells(vtkImageData* grid, vtkUnstructuredGrid* ref) +{ + auto gridArray = vtkArrayDownCast(grid->GetCellData()->GetAbstractArray("Pres")); + auto refArray = vtkArrayDownCast(ref->GetPointData()->GetAbstractArray("Pres")); + double refPoint[3]; + double bounds[6]; + int extent[6]; + grid->GetBounds(bounds); + grid->GetExtent(extent); + int width[3]; + vtkStructuredData::GetDimensionsFromExtent(extent, width); + int ijk[3]; + for (vtkIdType pointId = 0; pointId < ref->GetNumberOfPoints(); ++pointId) + { + ref->GetPoint(pointId, refPoint); + ijk[0] = (refPoint[0] - bounds[0]) / (bounds[1] - bounds[0]) * width[0]; + ijk[1] = (refPoint[1] - bounds[2]) / (bounds[3] - bounds[2]) * width[1]; + ijk[2] = (refPoint[2] - bounds[4]) / (bounds[5] - bounds[4]) * width[2]; + vtkIdType gridPointId = vtkStructuredData::ComputeCellId(width, ijk); + + if (std::abs(gridArray->GetValue(gridPointId) - refArray->GetValue(pointId)) > 1e-6) + { + vtkGenericWarningMacro("Computing gradient on a grid with hidden cells failed"); + return EXIT_FAILURE; + } + } + return EXIT_SUCCESS; +} } // end local namespace //------------------------------------------------------------------------------ @@ -518,5 +587,75 @@ int TestGradientAndVorticity(int argc, char* argv[]) return EXIT_FAILURE; } + // Testing handling of hidden cells and points + std::string disk_out_ref = data_root; + disk_out_ref += "/Data/disk_out_ref.ex2"; + vtkNew iossReader; + iossReader->SetFileName(disk_out_ref.c_str()); + iossReader->Update(); + vtkUnstructuredGrid* disk = vtkUnstructuredGrid::SafeDownCast(vtkPartitionedDataSet::SafeDownCast( + vtkPartitionedDataSetCollection::SafeDownCast(iossReader->GetOutputDataObject(0)) + ->GetPartitionedDataSet(0)) + ->GetPartition(0)); + + vtkNew resampler; + resampler->SetInputDataObject(disk); + resampler->SetSamplingDimensions(50, 50, 50); + resampler->SetUseInputBounds(true); + + vtkNew pointGradient; + pointGradient->SetInputArrayToProcess(0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_POINTS, "Pres"); + pointGradient->SetInputConnection(resampler->GetOutputPort()); + + vtkNew ugPointConverter; + ugPointConverter->SetInputConnection(resampler->GetOutputPort()); + ugPointConverter->SetInputArrayToProcess( + 0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_POINTS, "Pres"); + ugPointConverter->SetLowerThreshold(-std::numeric_limits::infinity()); + ugPointConverter->SetUpperThreshold(std::numeric_limits::infinity()); + + vtkNew pointRefGradient; + pointRefGradient->SetInputArrayToProcess( + 0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_POINTS, "Pres"); + pointRefGradient->SetInputConnection(ugPointConverter->GetOutputPort()); + + pointRefGradient->Update(); + pointGradient->Update(); + + if (TestPoints(vtkImageData::SafeDownCast(pointGradient->GetOutput()), + vtkUnstructuredGrid::SafeDownCast(pointRefGradient->GetOutput()))) + { + return EXIT_FAILURE; + } + return EXIT_SUCCESS; + + vtkNew point2cell; + point2cell->SetInputConnection(resampler->GetOutputPort()); + + vtkNew cellGradient; + cellGradient->SetInputArrayToProcess(0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_CELLS, "Pres"); + cellGradient->SetInputConnection(point2cell->GetOutputPort()); + + vtkNew ugCellConverter; + ugCellConverter->SetInputConnection(cellGradient->GetOutputPort()); + ugCellConverter->SetLowerThreshold(-std::numeric_limits::infinity()); + ugCellConverter->SetUpperThreshold(std::numeric_limits::infinity()); + + vtkNew cellRefGradient; + cellRefGradient->SetInputArrayToProcess(0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_CELLS, "Pres"); + cellRefGradient->SetInputConnection(ugCellConverter->GetOutputPort()); + + vtkNew cellCenterRefGradient; + cellCenterRefGradient->SetInputConnection(cellRefGradient->GetOutputPort()); + + cellCenterRefGradient->Update(); + cellGradient->Update(); + + if (TestCells(vtkImageData::SafeDownCast(cellGradient->GetOutput()), + vtkUnstructuredGrid::SafeDownCast(cellCenterRefGradient->GetOutput()))) + { + return EXIT_FAILURE; + } + return EXIT_SUCCESS; } diff --git a/Filters/General/vtkGradientFilter.cxx b/Filters/General/vtkGradientFilter.cxx index 183675c3e841..557e8ef5c84a 100644 --- a/Filters/General/vtkGradientFilter.cxx +++ b/Filters/General/vtkGradientFilter.cxx @@ -25,7 +25,9 @@ #include "vtkCellData.h" #include "vtkCellDataToPointData.h" #include "vtkDataArray.h" +#include "vtkDataArrayRange.h" #include "vtkDataSet.h" +#include "vtkDataSetAttributes.h" #include "vtkGenericCell.h" #include "vtkIdList.h" #include "vtkImageData.h" @@ -42,6 +44,7 @@ #include "vtkStaticCellLinks.h" #include "vtkStreamingDemandDrivenPipeline.h" #include "vtkStructuredGrid.h" +#include "vtkUnsignedCharArray.h" #include "vtkUnstructuredGrid.h" #include @@ -93,8 +96,9 @@ int GetCellParametricData( // Functions for image data and structured grids template -void ComputeGradientsSG(GridT* output, DataT* array, DataT* gradients, int numberOfInputComponents, - int fieldAssociation, DataT* vorticity, DataT* qCriterion, DataT* divergence); +void ComputeGradientsSG(GridT* output, int* dims, DataT* array, DataT* gradients, + int numberOfInputComponents, int fieldAssociation, DataT* vorticity, DataT* qCriterion, + DataT* divergence, vtkUnsignedCharArray* ghosts, unsigned char hiddenGhost); bool vtkGradientFilterHasArray(vtkFieldData* fieldData, vtkDataArray* array) { @@ -346,8 +350,36 @@ int vtkGradientFilter::RequestData(vtkInformation* vtkNotUsed(request), if (output->IsA("vtkImageData") || output->IsA("vtkStructuredGrid") || output->IsA("vtkRectilinearGrid")) { - this->ComputeRegularGridGradient( - array, fieldAssociation, computeVorticity, computeQCriterion, computeDivergence, output); + vtkUnsignedCharArray* ghosts = nullptr; + unsigned char hiddenGhost; + int dims[3]; + if (auto im = vtkImageData::SafeDownCast(output)) + { + im->GetDimensions(dims); + } + else if (auto rect = vtkRectilinearGrid::SafeDownCast(output)) + { + rect->GetDimensions(dims); + } + else if (auto sg = vtkStructuredGrid::SafeDownCast(output)) + { + sg->GetDimensions(dims); + } + if (fieldAssociation == vtkDataObject::FIELD_ASSOCIATION_POINTS) + { + ghosts = input->GetPointData()->GetGhostArray(); + hiddenGhost = vtkDataSetAttributes::HIDDENPOINT; + } + if (fieldAssociation == vtkDataObject::FIELD_ASSOCIATION_CELLS) + { + ghosts = input->GetCellData()->GetGhostArray(); + hiddenGhost = vtkDataSetAttributes::HIDDENCELL; + dims[0] -= (dims[0] != 1); + dims[1] -= (dims[1] != 1); + dims[2] -= (dims[2] != 1); + } + this->ComputeRegularGridGradient(array, dims, fieldAssociation, computeVorticity, + computeQCriterion, computeDivergence, output, ghosts, hiddenGhost); } else { @@ -648,26 +680,26 @@ struct CellGradientsWorker struct StructuredGradientsWorker { template - void operator()(DataT* array, vtkDataSet* output, vtkDataArray* gradients, + void operator()(DataT* array, vtkDataSet* output, int* dims, vtkDataArray* gradients, vtkDataArray* vorticity, vtkDataArray* qCriterion, vtkDataArray* divergence, - int fieldAssociation) + int fieldAssociation, vtkUnsignedCharArray* ghosts, unsigned char hiddenGhost) { int numComp = array->GetNumberOfComponents(); if (vtkStructuredGrid* sGrid = vtkStructuredGrid::SafeDownCast(output)) { - ComputeGradientsSG(sGrid, array, (DataT*)gradients, numComp, fieldAssociation, - (DataT*)vorticity, (DataT*)qCriterion, (DataT*)divergence); + ComputeGradientsSG(sGrid, dims, array, (DataT*)gradients, numComp, fieldAssociation, + (DataT*)vorticity, (DataT*)qCriterion, (DataT*)divergence, ghosts, hiddenGhost); } else if (vtkImageData* image = vtkImageData::SafeDownCast(output)) { - ComputeGradientsSG(image, array, (DataT*)gradients, numComp, fieldAssociation, - (DataT*)vorticity, (DataT*)qCriterion, (DataT*)divergence); + ComputeGradientsSG(image, dims, array, (DataT*)gradients, numComp, fieldAssociation, + (DataT*)vorticity, (DataT*)qCriterion, (DataT*)divergence, ghosts, hiddenGhost); } else if (vtkRectilinearGrid* rgrid = vtkRectilinearGrid::SafeDownCast(output)) { - ComputeGradientsSG(rgrid, array, (DataT*)gradients, numComp, fieldAssociation, - (DataT*)vorticity, (DataT*)qCriterion, (DataT*)divergence); + ComputeGradientsSG(rgrid, dims, array, (DataT*)gradients, numComp, fieldAssociation, + (DataT*)vorticity, (DataT*)qCriterion, (DataT*)divergence, ghosts, hiddenGhost); } } }; @@ -963,8 +995,9 @@ int vtkGradientFilter::ComputeUnstructuredGridGradient(vtkDataArray* array, int } //------------------------------------------------------------------------------ -int vtkGradientFilter::ComputeRegularGridGradient(vtkDataArray* array, int fieldAssociation, - bool computeVorticity, bool computeQCriterion, bool computeDivergence, vtkDataSet* output) +int vtkGradientFilter::ComputeRegularGridGradient(vtkDataArray* array, int* dims, + int fieldAssociation, bool computeVorticity, bool computeQCriterion, bool computeDivergence, + vtkDataSet* output, vtkUnsignedCharArray* ghosts, unsigned char hiddenGhost) { int arrayType = this->GetOutputArrayType(array); int numberOfInputComponents = array->GetNumberOfComponents(); @@ -1031,10 +1064,11 @@ int vtkGradientFilter::ComputeRegularGridGradient(vtkDataArray* array, int field using StructuredGradientsDispatch = vtkArrayDispatch::DispatchByValueType; StructuredGradientsWorker sgWorker; - if (!StructuredGradientsDispatch::Execute( - array, sgWorker, output, gradients, vorticity, qCriterion, divergence, fieldAssociation)) + if (!StructuredGradientsDispatch::Execute(array, sgWorker, output, dims, gradients, vorticity, + qCriterion, divergence, fieldAssociation, ghosts, hiddenGhost)) { - sgWorker(array, output, gradients, vorticity, qCriterion, divergence, fieldAssociation); + sgWorker(array, output, dims, gradients, vorticity, qCriterion, divergence, fieldAssociation, + ghosts, hiddenGhost); } if (fieldAssociation == vtkDataObject::FIELD_ASSOCIATION_POINTS) @@ -1128,6 +1162,22 @@ int GetCellParametricData( return 1; } +//------------------------------------------------------------------------------ +void HandleDegenerateDimension(double* xp, double* xm, int numComp, std::vector& plusvalues, + std::vector& minusvalues, double& factor, int dim) +{ + factor = 1.0; + for (int ii = 0; ii < 3; ii++) + { + xp[ii] = xm[ii] = 0.0; + } + xp[dim] = 1.0; + for (int inputComponent = 0; inputComponent < numComp; inputComponent++) + { + plusvalues[inputComponent] = minusvalues[inputComponent] = 0; + } +} + //------------------------------------------------------------------------------ // Threaded computation (on a slice-by-slice basis) of structured gradients. template @@ -1136,14 +1186,19 @@ struct ComputeStructuredSlice : public GradientsBase GridT* Grid; int* Dims; int FieldAssociation; + vtkUnsignedCharArray* Ghosts; + unsigned char HiddenGhost; vtkSMPThreadLocal> Cell; // prevent repeated instantiation ComputeStructuredSlice(GridT* output, int* dims, DataT* array, DataT* g, int numComp, - int fieldAssociation, DataT* v, DataT* q, DataT* d) + int fieldAssociation, DataT* v, DataT* q, DataT* d, vtkUnsignedCharArray* ghosts, + unsigned char hiddenGhost) : GradientsBase(array, numComp, g, v, q, d) , Grid(output) , Dims(dims) , FieldAssociation(fieldAssociation) + , Ghosts(ghosts) + , HiddenGhost(hiddenGhost) { } @@ -1184,63 +1239,64 @@ struct ComputeStructuredSlice : public GradientsBase { for (int i = 0; i < dims[0]; i++) { + if (this->Ghosts && + (this->Ghosts->GetValue(i + j * dims[0] + k * ijsize) & this->HiddenGhost)) + { + continue; + } // Xi derivatives. if (dims[0] == 1) // 2D in this direction { - factor = 1.0; - for (int ii = 0; ii < 3; ii++) + HandleDegenerateDimension(xp, xm, numComp, plusvalues, minusvalues, factor, 0); + } + else + { + if (i == 0) { - xp[ii] = xm[ii] = 0.0; + factor = 1.0; + idx = (i + 1) + j * dims[0] + k * ijsize; + idx2 = i + j * dims[0] + k * ijsize; } - xp[0] = 1.0; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + else if (i == (dims[0] - 1)) { - plusvalues[inputComponent] = minusvalues[inputComponent] = 0; + factor = 1.0; + idx = i + j * dims[0] + k * ijsize; + idx2 = i - 1 + j * dims[0] + k * ijsize; } - } - else if (i == 0) - { - factor = 1.0; - idx = (i + 1) + j * dims[0] + k * ijsize; - idx2 = i + j * dims[0] + k * ijsize; - GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); - GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); - auto a1 = array[idx]; - auto a2 = array[idx2]; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + else { - plusvalues[inputComponent] = a1[inputComponent]; - minusvalues[inputComponent] = a2[inputComponent]; + factor = 0.5; + idx = (i + 1) + j * dims[0] + k * ijsize; + idx2 = (i - 1) + j * dims[0] + k * ijsize; } - } - else if (i == (dims[0] - 1)) - { - factor = 1.0; - idx = i + j * dims[0] + k * ijsize; - idx2 = i - 1 + j * dims[0] + k * ijsize; - GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); - GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); - auto a1 = array[idx]; - auto a2 = array[idx2]; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + if (this->Ghosts) + { + if (this->Ghosts->GetValue(idx2) & this->HiddenGhost) + { + ++idx2; + factor += 0.5; + } + if (this->Ghosts->GetValue(idx) & this->HiddenGhost) + { + --idx; + factor += 0.5; + } + } + if (idx == idx2) { - plusvalues[inputComponent] = a1[inputComponent]; - minusvalues[inputComponent] = a2[inputComponent]; + HandleDegenerateDimension(xp, xm, numComp, plusvalues, minusvalues, factor, 0); } - } - else - { - factor = 0.5; - idx = (i + 1) + j * dims[0] + k * ijsize; - idx2 = (i - 1) + j * dims[0] + k * ijsize; - GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); - GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); - auto a1 = array[idx]; - auto a2 = array[idx2]; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + else { - plusvalues[inputComponent] = a1[inputComponent]; - minusvalues[inputComponent] = a2[inputComponent]; + GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); + GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); + auto a1 = array[idx]; + auto a2 = array[idx2]; + for (inputComponent = 0; inputComponent < numComp; inputComponent++) + { + plusvalues[inputComponent] = a1[inputComponent]; + minusvalues[inputComponent] = a2[inputComponent]; + } } } @@ -1256,60 +1312,56 @@ struct ComputeStructuredSlice : public GradientsBase // Eta derivatives. if (dims[1] == 1) // 2D in this direction { - factor = 1.0; - for (int ii = 0; ii < 3; ii++) + HandleDegenerateDimension(xp, xm, numComp, plusvalues, minusvalues, factor, 1); + } + else + { + if (j == 0) { - xp[ii] = xm[ii] = 0.0; + factor = 1.0; + idx = i + (j + 1) * dims[0] + k * ijsize; + idx2 = i + j * dims[0] + k * ijsize; } - xp[1] = 1.0; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + else if (j == (dims[1] - 1)) { - plusvalues[inputComponent] = minusvalues[inputComponent] = 0; + factor = 1.0; + idx = i + j * dims[0] + k * ijsize; + idx2 = i + (j - 1) * dims[0] + k * ijsize; } - } - else if (j == 0) - { - factor = 1.0; - idx = i + (j + 1) * dims[0] + k * ijsize; - idx2 = i + j * dims[0] + k * ijsize; - GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); - GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); - auto a1 = array[idx]; - auto a2 = array[idx2]; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + else { - plusvalues[inputComponent] = a1[inputComponent]; - minusvalues[inputComponent] = a2[inputComponent]; + factor = 0.5; + idx = i + (j + 1) * dims[0] + k * ijsize; + idx2 = i + (j - 1) * dims[0] + k * ijsize; } - } - else if (j == (dims[1] - 1)) - { - factor = 1.0; - idx = i + j * dims[0] + k * ijsize; - idx2 = i + (j - 1) * dims[0] + k * ijsize; - GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); - GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); - auto a1 = array[idx]; - auto a2 = array[idx2]; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + if (this->Ghosts) { - plusvalues[inputComponent] = a1[inputComponent]; - minusvalues[inputComponent] = a2[inputComponent]; + if (this->Ghosts->GetValue(idx2) & this->HiddenGhost) + { + idx2 += dims[0]; + factor += 0.5; + } + if (this->Ghosts->GetValue(idx) & this->HiddenGhost) + { + idx -= dims[0]; + factor += 0.5; + } } - } - else - { - factor = 0.5; - idx = i + (j + 1) * dims[0] + k * ijsize; - idx2 = i + (j - 1) * dims[0] + k * ijsize; - GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); - GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); - auto a1 = array[idx]; - auto a2 = array[idx2]; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + if (idx == idx2) { - plusvalues[inputComponent] = a1[inputComponent]; - minusvalues[inputComponent] = a2[inputComponent]; + HandleDegenerateDimension(xp, xm, numComp, plusvalues, minusvalues, factor, 1); + } + else + { + GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); + GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); + auto a1 = array[idx]; + auto a2 = array[idx2]; + for (inputComponent = 0; inputComponent < numComp; inputComponent++) + { + plusvalues[inputComponent] = a1[inputComponent]; + minusvalues[inputComponent] = a2[inputComponent]; + } } } @@ -1325,60 +1377,56 @@ struct ComputeStructuredSlice : public GradientsBase // Zeta derivatives. if (dims[2] == 1) // 2D in this direction { - factor = 1.0; - for (int ii = 0; ii < 3; ii++) + HandleDegenerateDimension(xp, xm, numComp, plusvalues, minusvalues, factor, 2); + } + else + { + if (k == 0) { - xp[ii] = xm[ii] = 0.0; + factor = 1.0; + idx = i + j * dims[0] + (k + 1) * ijsize; + idx2 = i + j * dims[0] + k * ijsize; } - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + else if (k == (dims[2] - 1)) { - plusvalues[inputComponent] = minusvalues[inputComponent] = 0; + factor = 1.0; + idx = i + j * dims[0] + k * ijsize; + idx2 = i + j * dims[0] + (k - 1) * ijsize; } - xp[2] = 1.0; - } - else if (k == 0) - { - factor = 1.0; - idx = i + j * dims[0] + (k + 1) * ijsize; - idx2 = i + j * dims[0] + k * ijsize; - GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); - GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); - auto a1 = array[idx]; - auto a2 = array[idx2]; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + else { - plusvalues[inputComponent] = a1[inputComponent]; - minusvalues[inputComponent] = a2[inputComponent]; + factor = 0.5; + idx = i + j * dims[0] + (k + 1) * ijsize; + idx2 = i + j * dims[0] + (k - 1) * ijsize; } - } - else if (k == (dims[2] - 1)) - { - factor = 1.0; - idx = i + j * dims[0] + k * ijsize; - idx2 = i + j * dims[0] + (k - 1) * ijsize; - GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); - GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); - auto a1 = array[idx]; - auto a2 = array[idx2]; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + if (this->Ghosts) { - plusvalues[inputComponent] = a1[inputComponent]; - minusvalues[inputComponent] = a2[inputComponent]; + if (this->Ghosts->GetValue(idx2) & this->HiddenGhost) + { + idx2 += ijsize; + factor += 0.5; + } + if (this->Ghosts->GetValue(idx) & this->HiddenGhost) + { + idx -= ijsize; + factor += 0.5; + } } - } - else - { - factor = 0.5; - idx = i + j * dims[0] + (k + 1) * ijsize; - idx2 = i + j * dims[0] + (k - 1) * ijsize; - GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); - GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); - auto a1 = array[idx]; - auto a2 = array[idx2]; - for (inputComponent = 0; inputComponent < numComp; inputComponent++) + if (idx == idx2) { - plusvalues[inputComponent] = a1[inputComponent]; - minusvalues[inputComponent] = a2[inputComponent]; + HandleDegenerateDimension(xp, xm, numComp, plusvalues, minusvalues, factor, 2); + } + else + { + GetGridEntityCoordinate(output, fieldAssociation, idx, xp, cell); + GetGridEntityCoordinate(output, fieldAssociation, idx2, xm, cell); + auto a1 = array[idx]; + auto a2 = array[idx2]; + for (inputComponent = 0; inputComponent < numComp; inputComponent++) + { + plusvalues[inputComponent] = a1[inputComponent]; + minusvalues[inputComponent] = a2[inputComponent]; + } } } @@ -1467,22 +1515,12 @@ struct ComputeStructuredSlice : public GradientsBase //------------------------------------------------------------------------------ // Process structured dataset types. Thread slice-by-slice. template -void ComputeGradientsSG(GridT* output, DataT* array, DataT* gradients, int numComp, - int fieldAssociation, DataT* vorticity, DataT* qCriterion, DataT* divergence) +void ComputeGradientsSG(GridT* output, int* dims, DataT* array, DataT* gradients, int numComp, + int fieldAssociation, DataT* vorticity, DataT* qCriterion, DataT* divergence, + vtkUnsignedCharArray* ghosts, unsigned char hiddenGhost) { - int dims[3]; - output->GetDimensions(dims); - if (fieldAssociation == vtkDataObject::FIELD_ASSOCIATION_CELLS) - { - // reduce the dimensions by 1 for cells - for (int i = 0; i < 3; i++) - { - dims[i]--; - } - } - - ComputeStructuredSlice structuredSliceWorker( - output, dims, array, gradients, numComp, fieldAssociation, vorticity, qCriterion, divergence); + ComputeStructuredSlice structuredSliceWorker(output, dims, array, gradients, + numComp, fieldAssociation, vorticity, qCriterion, divergence, ghosts, hiddenGhost); vtkSMPTools::For(0, dims[2], structuredSliceWorker); } diff --git a/Filters/General/vtkGradientFilter.h b/Filters/General/vtkGradientFilter.h index cf793b875c13..f958b2ce01de 100644 --- a/Filters/General/vtkGradientFilter.h +++ b/Filters/General/vtkGradientFilter.h @@ -49,6 +49,8 @@ #include "vtkDataSetAlgorithm.h" #include "vtkFiltersGeneralModule.h" // For export macro +class vtkUnsignedCharArray; + class VTKFILTERSGENERAL_EXPORT vtkGradientFilter : public vtkDataSetAlgorithm { public: @@ -233,8 +235,9 @@ protected: * a vtkStructuredGrid. Computes the gradient using finite differences. * Returns non-zero if the operation was successful. */ - virtual int ComputeRegularGridGradient(vtkDataArray* Array, int fieldAssociation, - bool computeVorticity, bool computeQCriterion, bool computeDivergence, vtkDataSet* output); + virtual int ComputeRegularGridGradient(vtkDataArray* Array, int* dims, int fieldAssociation, + bool computeVorticity, bool computeQCriterion, bool computeDivergence, vtkDataSet* output, + vtkUnsignedCharArray* ghosts, unsigned char hiddenGhost); /** * Get the proper array type to compute requested derivative quantities for. -- GitLab From af351c88359c5b3daaf0d62090c11ff8d7393588 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 18 Apr 2022 15:35:13 -0400 Subject: [PATCH 0037/1015] vtkExtractSelection: Expression evaluation error checking --- Filters/Extraction/vtkExtractSelection.cxx | 35 ++++++++++++++++++---- 1 file changed, 29 insertions(+), 6 deletions(-) diff --git a/Filters/Extraction/vtkExtractSelection.cxx b/Filters/Extraction/vtkExtractSelection.cxx index 2ffd02ebfda1..6a654cede731 100644 --- a/Filters/Extraction/vtkExtractSelection.cxx +++ b/Filters/Extraction/vtkExtractSelection.cxx @@ -267,11 +267,11 @@ int vtkExtractSelection::RequestData(vtkInformation* vtkNotUsed(request), } } - auto evaluate = [&selectors, assoc, &selection](vtkDataObject* dobj) { + auto evaluate = [&selectors, assoc, &selection](vtkDataObject* dobj) -> bool { auto fieldData = dobj->GetAttributes(assoc); if (!fieldData) { - return; + return true; } // Iterate over operators and set up a map from selection node name to insidedness @@ -292,8 +292,16 @@ int vtkExtractSelection::RequestData(vtkInformation* vtkNotUsed(request), // Evaluate the map of insidedness arrays auto blockInsidedness = selection->Evaluate(arrayMap); - blockInsidedness->SetName("__vtkInsidedness__"); - fieldData->AddArray(blockInsidedness); + if (blockInsidedness) + { + blockInsidedness->SetName("__vtkInsidedness__"); + fieldData->AddArray(blockInsidedness); + return true; + } + else + { + return false; + } }; auto extract = [&assoc, this]( @@ -342,14 +350,24 @@ int vtkExtractSelection::RequestData(vtkInformation* vtkNotUsed(request), // combine all the insidedness arrays. vtkSmartPointer outIter; outIter.TakeReference(outputCD->NewIterator()); + bool evaluateResult = true; for (outIter->GoToFirstItem(); !outIter->IsDoneWithTraversal(); outIter->GoToNextItem()) { auto outputBlock = outIter->GetCurrentDataObject(); assert(outputBlock != nullptr); // Evaluate the expression. - evaluate(outputBlock); + if (!evaluate(outputBlock)) + { + evaluateResult = false; + break; + } } vtkLogEndScope("evaluate expression"); + // check for evaluate result errors + if (!evaluateResult) + { + return 0; + } vtkLogStartScope(TRACE, "extract output"); // input iterator is needed because if inputCD is subclass of vtkUniformGridAMR, @@ -380,8 +398,13 @@ int vtkExtractSelection::RequestData(vtkInformation* vtkNotUsed(request), vtkLogEndScope("execute selectors"); vtkLogStartScope(TRACE, "evaluate expression"); - evaluate(clone); + bool evaluateResult = evaluate(clone); vtkLogEndScope("evaluate expression"); + // check for evaluate result errors + if (!evaluateResult) + { + return 0; + } vtkLogStartScope(TRACE, "extract output"); if (auto result = extract(input, clone)) -- GitLab From 5710cc971f3d0b3a083c53770bf9f9a41fc32656 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Sat, 16 Apr 2022 02:53:51 -0400 Subject: [PATCH 0038/1015] vtkStaticCellLocator: Improve FindClosestPointWithinRadius, Step 1 The cost of allocating/initializing/accessing such a huge vector is greater than revisiting the same cells. With this change on a specific streamlines experiment the speedup of FindClosestPointWithinRadius function was: 5.576 sec / 4.822 sec = 1.15 times better. Also allocate many stack variables only once. --- Common/DataModel/vtkStaticCellLocator.cxx | 41 ++++++++++------------- 1 file changed, 17 insertions(+), 24 deletions(-) diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 269e75f2b804..3582068e7b5a 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -504,7 +504,7 @@ vtkIdType CellProcessor::FindCell( int subId; vtkIdType cellId; - for (int j = 0; j < numIds; j++) + for (T j = 0; j < numIds; j++) { cellId = cellIds[j].CellId; bounds = this->CellBounds + 6 * cellId; @@ -910,7 +910,7 @@ void CellProcessor::FindCellsAlongPlane( // WARNING!!!!! Be very careful altering this routine. Simple changes to this // routine can make it 25% slower!!!! // Return closest point (if any) AND the cell on which this closest point lies -double Distance2ToBounds(const double x[3], double bounds[6]) +double Distance2ToBounds(const double x[3], const double bounds[6]) { double distance; double deltas[3]; @@ -969,13 +969,13 @@ vtkIdType CellProcessor::FindClosestPointWithinRadius(const double x[3], doub double& minDist2, int& inside) { std::vector binHasBeenQueued(this->NumBins, false); - std::vector cellHasBeenVisited(this->NumCells, false); std::vector weights(6); - double pcoords[3], point[3], bds[6]; - double distance2ToCellBounds, dist2; - int subId; - int ijk[3]; + double pcoords[3], point[3], bds[6], *bounds; + double distance2ToCellBounds, dist2, binDist2; + int subId, stat, ijk[3]; vtkIdType retVal = 0; + T numIds, j, cellId; + size_t nPoints; using node = std::pair; std::priority_queue, std::greater> queue; @@ -985,42 +985,35 @@ vtkIdType CellProcessor::FindClosestPointWithinRadius(const double x[3], doub queue.push(std::make_pair(0.0, binId)); binHasBeenQueued[binId] = true; - // distance to closest point + // minimum squared distance to the closest point minDist2 = radius * radius; // Process the queue of candidate bins until the candidate bins are // further away than the current closest point. while (!queue.empty()) { - binId = queue.top().second; - double binDist2 = queue.top().first; - queue.pop(); + auto& top = queue.top(); + binId = top.second; + binDist2 = top.first; // stop if bounding box is further away than current closest point if (binDist2 > minDist2) { break; } + // perform pop after ensuring that the bin is within the bounds + queue.pop(); // compute distance to cells in bin, if any - T numIds = this->GetNumberOfIds(binId); + numIds = this->GetNumberOfIds(binId); if (numIds >= 1) { const CellFragments* cellIds = this->GetIds(binId); - double* bounds; - vtkIdType cellId; - for (int j = 0; j < numIds; j++) + for (j = 0; j < numIds; j++) { cellId = cellIds[j].CellId; - // skip if cell was already visited - if (cellHasBeenVisited[cellId]) - { - continue; - } - cellHasBeenVisited[cellId] = true; - // compute distance to cell bounding box bounds = this->CellBounds + 6 * cellId; distance2ToCellBounds = Distance2ToBounds(x, bounds); @@ -1031,7 +1024,7 @@ vtkIdType CellProcessor::FindClosestPointWithinRadius(const double x[3], doub this->DataSet->GetCell(cellId, cell); // make sure we have enough storage space for the weights - unsigned nPoints = static_cast(cell->GetPointIds()->GetNumberOfIds()); + nPoints = static_cast(cell->GetPointIds()->GetNumberOfIds()); if (nPoints > weights.size()) { weights.resize(2 * nPoints); @@ -1042,7 +1035,7 @@ vtkIdType CellProcessor::FindClosestPointWithinRadius(const double x[3], doub // stat=1 means inside. However, for real world performance, // we sometime select stat==0 cells if the distance is close // enough - int stat = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights.data()); + stat = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights.data()); if (stat != -1 && dist2 < minDist2) { -- GitLab From 61ed2788c68f7fdc5df8cfb9695f8b0781d0b5fd Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 19 Apr 2022 22:17:01 -0400 Subject: [PATCH 0039/1015] vtkStaticCellLocator: Improve FindClosestPointWithinRadius, Step 2 The significance of this change is that we allocate deltas only when we need, and we immediately initialize them. Also, previously deltas were writen 1 ( = 0) or 2 times, now it's written only once. Finally, vtkMath::Dot call has been replaced by vtkMath::SquaredNorm because while both variables were the same, inside the function call they are considered different while they shouldn't. With this change on a specific streamlines experiment Distance2Bounds Before changes took 1.670 sec, After changes took 1.452 sec. The speedup is 1.670 sec / 1.452 sec = 1.15 times better. --- Common/DataModel/vtkPlane.cxx | 2 +- Common/DataModel/vtkStaticCellLocator.cxx | 46 +++-------------------- 2 files changed, 6 insertions(+), 42 deletions(-) diff --git a/Common/DataModel/vtkPlane.cxx b/Common/DataModel/vtkPlane.cxx index 8e783a2415c3..becf886c7ae1 100644 --- a/Common/DataModel/vtkPlane.cxx +++ b/Common/DataModel/vtkPlane.cxx @@ -121,7 +121,7 @@ void vtkPlane::GeneralizedProjectPoint( xo[2] = x[2] - origin[2]; t = vtkMath::Dot(normal, xo); - n2 = vtkMath::Dot(normal, normal); + n2 = vtkMath::SquaredNorm(normal); if (n2 != 0) { diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 3582068e7b5a..791d21c75481 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -912,53 +912,17 @@ void CellProcessor::FindCellsAlongPlane( // Return closest point (if any) AND the cell on which this closest point lies double Distance2ToBounds(const double x[3], const double bounds[6]) { - double distance; - double deltas[3]; - // Are we within the bounds? if (x[0] >= bounds[0] && x[0] <= bounds[1] && x[1] >= bounds[2] && x[1] <= bounds[3] && x[2] >= bounds[4] && x[2] <= bounds[5]) { return 0.0; } - - deltas[0] = deltas[1] = deltas[2] = 0.0; - - // dx - // - if (x[0] < bounds[0]) - { - deltas[0] = bounds[0] - x[0]; - } - else if (x[0] > bounds[1]) - { - deltas[0] = x[0] - bounds[1]; - } - - // dy - // - if (x[1] < bounds[2]) - { - deltas[1] = bounds[2] - x[1]; - } - else if (x[1] > bounds[3]) - { - deltas[1] = x[1] - bounds[3]; - } - - // dz - // - if (x[2] < bounds[4]) - { - deltas[2] = bounds[4] - x[2]; - } - else if (x[2] > bounds[5]) - { - deltas[2] = x[2] - bounds[5]; - } - - distance = vtkMath::Dot(deltas, deltas); - return distance; + double deltas[3]; + deltas[0] = x[0] < bounds[0] ? bounds[0] - x[0] : (x[0] > bounds[1] ? x[0] - bounds[1] : 0.0); + deltas[1] = x[1] < bounds[2] ? bounds[2] - x[1] : (x[1] > bounds[3] ? x[1] - bounds[3] : 0.0); + deltas[2] = x[2] < bounds[4] ? bounds[4] - x[2] : (x[2] > bounds[5] ? x[2] - bounds[5] : 0.0); + return vtkMath::SquaredNorm(deltas); } //------------------------------------------------------------------------------ -- GitLab From bb79b7b8ff1c907d3a6d73d17617799abf3caeb6 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 20 Apr 2022 08:03:34 -0400 Subject: [PATCH 0040/1015] vtkStaticCellLocator: Improve FindClosestPointWithinRadius, Step 3 Ensure correct weights array size. --- Common/DataModel/vtkStaticCellLocator.cxx | 18 ++++++------------ 1 file changed, 6 insertions(+), 12 deletions(-) diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 791d21c75481..84269a732432 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -252,6 +252,7 @@ struct vtkCellProcessor int BatchSize; int NumBatches; vtkIdType xD, xyD; + size_t MaxCellSize; vtkCellProcessor(vtkCellBinner* cb) : Binner(cb) @@ -264,10 +265,11 @@ struct vtkCellProcessor this->NumBins = cb->NumBins; this->BatchSize = 10000; // building the offset array this->NumBatches = - static_cast(ceil(static_cast(this->NumFragments) / this->BatchSize)); + static_cast(std::ceil(static_cast(this->NumFragments) / this->BatchSize)); - xD = cb->xD; // for speeding up computation - xyD = cb->xyD; + this->xD = cb->xD; // for speeding up computation + this->xyD = cb->xyD; + this->MaxCellSize = static_cast(cb->DataSet->GetMaxCellSize()); } virtual ~vtkCellProcessor() = default; @@ -933,13 +935,12 @@ vtkIdType CellProcessor::FindClosestPointWithinRadius(const double x[3], doub double& minDist2, int& inside) { std::vector binHasBeenQueued(this->NumBins, false); - std::vector weights(6); + std::vector weights(this->MaxCellSize); double pcoords[3], point[3], bds[6], *bounds; double distance2ToCellBounds, dist2, binDist2; int subId, stat, ijk[3]; vtkIdType retVal = 0; T numIds, j, cellId; - size_t nPoints; using node = std::pair; std::priority_queue, std::greater> queue; @@ -987,13 +988,6 @@ vtkIdType CellProcessor::FindClosestPointWithinRadius(const double x[3], doub { this->DataSet->GetCell(cellId, cell); - // make sure we have enough storage space for the weights - nPoints = static_cast(cell->GetPointIds()->GetNumberOfIds()); - if (nPoints > weights.size()) - { - weights.resize(2 * nPoints); - } - // evaluate the position to find the closest point // stat==(-1) is numerical error; stat==0 means outside; // stat=1 means inside. However, for real world performance, -- GitLab From 7598944a2621a94de1b694e6d05ce85c62896809 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 19 Apr 2022 16:57:02 -0400 Subject: [PATCH 0041/1015] vtkAbstractCellLocator: Create FindCell with subId Also convert all floats to double in vtkCellTreeLocator for more robust results. --- Common/DataModel/vtkAbstractCellLocator.cxx | 8 +- Common/DataModel/vtkAbstractCellLocator.h | 4 + Common/DataModel/vtkCellLocator.cxx | 10 +- Common/DataModel/vtkCellLocator.h | 4 + Common/DataModel/vtkCellLocatorStrategy.cxx | 3 +- Common/DataModel/vtkStaticCellLocator.cxx | 33 +++-- Common/DataModel/vtkStaticCellLocator.h | 4 + .../vtkCachingInterpolatedVelocityField.cxx | 6 +- Filters/FlowPaths/vtkModifiedBSPTree.cxx | 10 +- Filters/FlowPaths/vtkModifiedBSPTree.h | 4 + Filters/General/vtkCellTreeLocator.cxx | 114 +++++++++--------- Filters/General/vtkCellTreeLocator.h | 26 ++-- 12 files changed, 136 insertions(+), 90 deletions(-) diff --git a/Common/DataModel/vtkAbstractCellLocator.cxx b/Common/DataModel/vtkAbstractCellLocator.cxx index 98fa4290ce58..eda0127b97cd 100644 --- a/Common/DataModel/vtkAbstractCellLocator.cxx +++ b/Common/DataModel/vtkAbstractCellLocator.cxx @@ -180,8 +180,14 @@ vtkIdType vtkAbstractCellLocator::FindCell(double x[3]) vtkIdType vtkAbstractCellLocator::FindCell( double x[3], double tol2, vtkGenericCell* GenCell, double pcoords[3], double* weights) { - vtkIdType returnVal = -1; int subId; + return this->FindCell(x, tol2, GenCell, subId, pcoords, weights); +} +//------------------------------------------------------------------------------ +vtkIdType vtkAbstractCellLocator::FindCell( + double x[3], double tol2, vtkGenericCell* GenCell, int& subId, double pcoords[3], double* weights) +{ + vtkIdType returnVal = -1; // static bool warning_shown = false; if (!warning_shown) diff --git a/Common/DataModel/vtkAbstractCellLocator.h b/Common/DataModel/vtkAbstractCellLocator.h index 9c2ad9d26ba5..4de955ac8eae 100644 --- a/Common/DataModel/vtkAbstractCellLocator.h +++ b/Common/DataModel/vtkAbstractCellLocator.h @@ -244,6 +244,7 @@ public: */ virtual vtkIdType FindCell(double x[3]); + ///@{ /** * Find the cell containing a given point. returns -1 if no cell found * the cell parameters are copied into the supplied variables, a cell must @@ -251,6 +252,9 @@ public: */ virtual vtkIdType FindCell( double x[3], double tol2, vtkGenericCell* GenCell, double pcoords[3], double* weights); + virtual vtkIdType FindCell(double x[3], double tol2, vtkGenericCell* GenCell, int& subId, + double pcoords[3], double* weights); + ///@} /** * Quickly test if a point is inside the bounds of a particular cell. diff --git a/Common/DataModel/vtkCellLocator.cxx b/Common/DataModel/vtkCellLocator.cxx index 969db388b5a8..c2149337f261 100644 --- a/Common/DataModel/vtkCellLocator.cxx +++ b/Common/DataModel/vtkCellLocator.cxx @@ -1652,11 +1652,17 @@ static bool vtkCellLocator_Inside(const double bounds[6], const double point[3]) } //------------------------------------------------------------------------------ vtkIdType vtkCellLocator::FindCell( - double x[3], double vtkNotUsed(tol2), vtkGenericCell* cell, double pcoords[3], double* weights) + double x[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) +{ + int subId; + return this->FindCell(x, tol2, cell, subId, pcoords, weights); +} +//------------------------------------------------------------------------------ +vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* cell, + int& subId, double pcoords[3], double* weights) { vtkIdList* cellIds; int ijk[3]; - int subId; double dist2; double cellBounds[6]; diff --git a/Common/DataModel/vtkCellLocator.h b/Common/DataModel/vtkCellLocator.h index 4baca3b36ca7..dc73f4983036 100644 --- a/Common/DataModel/vtkCellLocator.h +++ b/Common/DataModel/vtkCellLocator.h @@ -128,6 +128,7 @@ public: */ virtual int GetNumberOfBuckets(void); + ///@{ /** * Find the cell containing a given point. returns -1 if no cell found * the cell parameters are copied into the supplied variables, a cell must @@ -135,6 +136,9 @@ public: */ vtkIdType FindCell( double x[3], double tol2, vtkGenericCell* GenCell, double pcoords[3], double* weights) override; + vtkIdType FindCell(double x[3], double tol2, vtkGenericCell* GenCell, int& subId, + double pcoords[3], double* weights) override; + ///@} /** * Return a list of unique cell ids inside of a given bounding box. The diff --git a/Common/DataModel/vtkCellLocatorStrategy.cxx b/Common/DataModel/vtkCellLocatorStrategy.cxx index 6f69ae060f7e..a3449fcccf46 100644 --- a/Common/DataModel/vtkCellLocatorStrategy.cxx +++ b/Common/DataModel/vtkCellLocatorStrategy.cxx @@ -129,8 +129,7 @@ vtkIdType vtkCellLocatorStrategy::FindCell(double x[3], vtkCell* cell, vtkGeneri } // Okay cache miss, try the cell locator - subId = 0; // The cell locator FindCell API should return subId. - return this->CellLocator->FindCell(x, tol2, gencell, pcoords, weights); + return this->CellLocator->FindCell(x, tol2, gencell, subId, pcoords, weights); } //------------------------------------------------------------------------------ diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 84269a732432..9dbce1e89654 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -277,6 +277,8 @@ struct vtkCellProcessor // Satisfy cell locator API virtual vtkIdType FindCell( const double pos[3], vtkGenericCell* cell, double pcoords[3], double* weights) = 0; + virtual vtkIdType FindCell( + const double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) = 0; virtual void FindCellsWithinBounds(double* bbox, vtkIdList* cells) = 0; virtual void FindCellsAlongLine( const double p1[3], const double p2[3], double tol, vtkIdList* cells) = 0; @@ -356,6 +358,8 @@ struct CellProcessor : public vtkCellProcessor // Methods to satisfy vtkCellProcessor virtual API vtkIdType FindCell( const double pos[3], vtkGenericCell* cell, double pcoords[3], double* weights) override; + vtkIdType FindCell(const double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], + double* weights) override; void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; void FindCellsAlongLine( const double p1[3], const double p2[3], double tol, vtkIdList* cells) override; @@ -487,6 +491,15 @@ struct MapOffsets template vtkIdType CellProcessor::FindCell( const double pos[3], vtkGenericCell* cell, double pcoords[3], double* weights) +{ + int subId; + return this->FindCell(pos, cell, subId, pcoords, weights); +} + +//------------------------------------------------------------------------------ +template +vtkIdType CellProcessor::FindCell( + const double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { vtkIdType binId = this->Binner->GetBinIndex(pos); T numIds = this->GetNumberOfIds(binId); @@ -503,7 +516,6 @@ vtkIdType CellProcessor::FindCell( const CellFragments* cellIds = this->GetIds(binId); double tol = this->Binner->binTol; double dist2, *bounds, delta[3] = { tol, tol, tol }; - int subId; vtkIdType cellId; for (T j = 0; j < numIds; j++) @@ -1271,6 +1283,14 @@ void vtkStaticCellLocator::FreeSearchStructure() //------------------------------------------------------------------------------ vtkIdType vtkStaticCellLocator::FindCell( double pos[3], double, vtkGenericCell* cell, double pcoords[3], double* weights) +{ + int subId; + return this->FindCell(pos, 0 /*not used*/, cell, subId, pcoords, weights); +} + +//------------------------------------------------------------------------------ +vtkIdType vtkStaticCellLocator::FindCell( + double pos[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { this->BuildLocator(); if (!this->Processor) @@ -1458,9 +1478,9 @@ void vtkStaticCellLocator::GenerateRepresentation(int vtkNotUsed(level), vtkPoly return; } - vtkPoints* pts = vtkPoints::New(); + vtkNew pts; pts->SetDataTypeToFloat(); - vtkCellArray* polys = vtkCellArray::New(); + vtkNew polys; pd->SetPoints(pts); pd->SetPolys(polys); @@ -1474,7 +1494,7 @@ void vtkStaticCellLocator::GenerateRepresentation(int vtkNotUsed(level), vtkPoly origin[2] = this->Bounds[4]; // A locator is used to avoid duplicate points - vtkMergePoints* locator = vtkMergePoints::New(); + vtkNew locator; locator->InitPointInsertion(pts, this->Bounds, dims[0] * dims[1] * dims[2]); for (k = 0; k < dims[2]; k++) @@ -1594,11 +1614,6 @@ void vtkStaticCellLocator::GenerateRepresentation(int vtkNotUsed(level), vtkPoly } // x } // y } // z - - // Clean up - locator->Delete(); - polys->Delete(); - pts->Delete(); } //------------------------------------------------------------------------------ diff --git a/Common/DataModel/vtkStaticCellLocator.h b/Common/DataModel/vtkStaticCellLocator.h index d04227889906..f49e298f65fb 100644 --- a/Common/DataModel/vtkStaticCellLocator.h +++ b/Common/DataModel/vtkStaticCellLocator.h @@ -76,12 +76,16 @@ public: using vtkAbstractCellLocator::FindClosestPoint; using vtkAbstractCellLocator::FindClosestPointWithinRadius; + ///@{ /** * Test a point to find if it is inside a cell. Returns the cellId if inside * or -1 if not. */ vtkIdType FindCell(double pos[3], double vtkNotUsed(tol2), vtkGenericCell* cell, double pcoords[3], double* weights) override; + vtkIdType FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* GenCell, int& subId, + double pcoords[3], double* weights) override; + ///@} /** * Reimplemented from vtkAbstractCellLocator to support bad compilers. diff --git a/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx index 88b3e37308fa..e4bc429bd058 100644 --- a/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx @@ -269,7 +269,7 @@ int vtkCachingInterpolatedVelocityField::InsideTest(double* x) int vtkCachingInterpolatedVelocityField::InsideTest(IVFDataSetInfo* data, double* x) { int cellId = - data->BSPTree->FindCell(x, data->Tolerance, data->Cell, data->PCoords, &this->Weights[0]); + data->BSPTree->FindCell(x, data->Tolerance, data->Cell, data->PCoords, this->Weights.data()); if (cellId != -1) { this->LastCellId = cellId; @@ -304,7 +304,7 @@ int vtkCachingInterpolatedVelocityField::FunctionValues(IVFDataSetInfo* data, do if (data->BSPTree) { int cellId = - data->BSPTree->FindCell(x, data->Tolerance, data->Cell, data->PCoords, &this->Weights[0]); + data->BSPTree->FindCell(x, data->Tolerance, data->Cell, data->PCoords, this->Weights.data()); this->LastCellId = cellId; } else @@ -316,7 +316,7 @@ int vtkCachingInterpolatedVelocityField::FunctionValues(IVFDataSetInfo* data, do tmpCell = this->TempCell; } this->LastCellId = data->DataSet->FindCell(x, tmpCell, data->Cell, this->LastCellId, - data->Tolerance, subId, data->PCoords, &this->Weights[0]); + data->Tolerance, subId, data->PCoords, this->Weights.data()); if (this->LastCellId != -1) { data->DataSet->GetCell(this->LastCellId, data->Cell); diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.cxx b/Filters/FlowPaths/vtkModifiedBSPTree.cxx index 3821e2764513..c44fa07f3509 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.cxx +++ b/Filters/FlowPaths/vtkModifiedBSPTree.cxx @@ -1010,7 +1010,14 @@ int vtkModifiedBSPTree::IntersectCellInternal(vtkIdType cell_ID, const double p1 bool vtkModifiedBSPTree_Inside(double bounds[6], double point[3]); //------------------------------------------------------------------------------ vtkIdType vtkModifiedBSPTree::FindCell( - double x[3], double, vtkGenericCell* cell, double pcoords[3], double* weights) + double x[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) +{ + int subId; + return this->FindCell(x, tol2, cell, subId, pcoords, weights); +} +//------------------------------------------------------------------------------ +vtkIdType vtkModifiedBSPTree::FindCell( + double x[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { // this->BuildLocatorIfNeeded(); @@ -1019,7 +1026,6 @@ vtkIdType vtkModifiedBSPTree::FindCell( BSPNode* node; ns.push(this->mRoot); double closestPoint[3], dist2; - int subId; // while (!ns.empty()) { diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.h b/Filters/FlowPaths/vtkModifiedBSPTree.h index 3862c3cb20de..1df93aa70f4b 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.h +++ b/Filters/FlowPaths/vtkModifiedBSPTree.h @@ -220,12 +220,16 @@ public: virtual int IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, vtkIdList* cellIds); + ///@{ /** * Test a point to find if it is inside a cell. Returns the cellId if inside * or -1 if not. */ vtkIdType FindCell( double x[3], double tol2, vtkGenericCell* GenCell, double pcoords[3], double* weights) override; + vtkIdType FindCell(double x[3], double tol2, vtkGenericCell* GenCell, int& subId, + double pcoords[3], double* weights) override; + ///@} bool InsideCellBounds(double x[3], vtkIdType cell_ID) override; diff --git a/Filters/General/vtkCellTreeLocator.cxx b/Filters/General/vtkCellTreeLocator.cxx index f3f995f5169a..1d80220b4ddc 100644 --- a/Filters/General/vtkCellTreeLocator.cxx +++ b/Filters/General/vtkCellTreeLocator.cxx @@ -23,9 +23,6 @@ #include "vtkPolyData.h" #include "vtkSmartPointer.h" #include -#include -#include -#include #include #include #include @@ -54,7 +51,7 @@ enum // planes. start is the location in the cell tree. e.g. for root node start is zero. size is the // number of the nodes under the tree inline void vtkCellTreeLocator::vtkCellTreeNode::MakeNode(unsigned int left, unsigned int d, - float b[2]) // b is an array containing left max and right min values + double b[2]) // b is an array containing left max and right min values { this->Index = (d & 3) | (left << 2); this->LeftMax = b[0]; @@ -88,12 +85,12 @@ inline unsigned int vtkCellTreeLocator::vtkCellTreeNode::GetDimension() const return this->Index & 3; } //------------------------------------------------------------------------------ -inline const float& vtkCellTreeLocator::vtkCellTreeNode::GetLeftMaxValue() const +inline const double& vtkCellTreeLocator::vtkCellTreeNode::GetLeftMaxValue() const { return this->LeftMax; } //------------------------------------------------------------------------------ -inline const float& vtkCellTreeLocator::vtkCellTreeNode::GetRightMinValue() const +inline const double& vtkCellTreeLocator::vtkCellTreeNode::GetRightMinValue() const { return this->RightMin; } @@ -129,8 +126,8 @@ class vtkCellPointTraversal private: const vtkCellTreeLocator::vtkCellTree& m_ct; unsigned int m_stack[CELLTREE_MAX_DEPTH]; - unsigned int* m_sp; // stack pointer - const float* m_pos; // 3-D coordinates of the points + unsigned int* m_sp; // stack pointer + const double* m_pos; // 3-D coordinates of the points vtkCellPointTraversal(const vtkCellPointTraversal&) = delete; void operator=(vtkCellPointTraversal&) = delete; @@ -140,7 +137,7 @@ protected: friend class vtkCellTreeBuilder; public: - vtkCellPointTraversal(const vtkCellTreeLocator::vtkCellTree& ct, const float* pos) + vtkCellPointTraversal(const vtkCellTreeLocator::vtkCellTree& ct, const double* pos) : m_ct(ct) , m_pos(pos) { @@ -166,7 +163,7 @@ public: return n; } - const float p = m_pos[n->GetDimension()]; + const double p = m_pos[n->GetDimension()]; const unsigned int left = n->GetLeftChildIndex(); bool l = p <= n->GetLeftMaxValue(); // Check if the points is within the left sub tree @@ -207,18 +204,18 @@ class vtkCellTreeBuilder private: struct Bucket { - float Min; - float Max; + double Min; + double Max; unsigned int Cnt; Bucket() { Cnt = 0; - Min = std::numeric_limits::max(); - Max = -std::numeric_limits::max(); + Min = std::numeric_limits::max(); + Max = -std::numeric_limits::max(); } - void Add(const float _min, const float _max) + void Add(const double _min, const double _max) { ++Cnt; @@ -236,8 +233,8 @@ private: struct PerCell { - float Min[3]; - float Max[3]; + double Min[3]; + double Max[3]; unsigned int Ind; }; @@ -258,8 +255,8 @@ private: struct LeftPredicate { unsigned int d; - float p; - LeftPredicate(unsigned int _d, float _p) + double p; + LeftPredicate(unsigned int _d, double _p) : d(_d) , p(2.0f * _p) { @@ -270,7 +267,7 @@ private: // ------------------------------------------------------------------------- - void FindMinMax(const PerCell* begin, const PerCell* end, float* min, float* max) + void FindMinMax(const PerCell* begin, const PerCell* end, double* min, double* max) { if (begin == end) { @@ -297,7 +294,7 @@ private: // ------------------------------------------------------------------------- - void Split(unsigned int index, float min[3], float max[3]) + void Split(unsigned int index, double min[3], double max[3]) { unsigned int start = this->m_nodes[index].Start(); unsigned int size = this->m_nodes[index].Size(); @@ -313,8 +310,8 @@ private: const int nbuckets = 6; - const float ext[3] = { max[0] - min[0], max[1] - min[1], max[2] - min[2] }; - const float iext[3] = { nbuckets / ext[0], nbuckets / ext[1], nbuckets / ext[2] }; + const double ext[3] = { max[0] - min[0], max[1] - min[1], max[2] - min[2] }; + const double iext[3] = { nbuckets / ext[0], nbuckets / ext[1], nbuckets / ext[2] }; Bucket b[3][nbuckets]; @@ -322,7 +319,7 @@ private: { for (unsigned int d = 0; d < 3; ++d) { - float cen = (pc->Min[d] + pc->Max[d]) / 2.0f; + double cen = (pc->Min[d] + pc->Max[d]) / 2.0f; int ind = (int)((cen - min[d]) * iext[d]); if (ind < 0) @@ -339,8 +336,8 @@ private: } } - float cost = std::numeric_limits::max(); - float plane = VTK_FLOAT_MIN; // bad value in case it doesn't get setx + double cost = std::numeric_limits::max(); + double plane = VTK_DOUBLE_MIN; // bad value in case it doesn't get setx unsigned int dim = VTK_INT_MAX; // bad value in case it doesn't get set for (unsigned int d = 0; d < 3; ++d) @@ -349,8 +346,8 @@ private: for (unsigned int n = 0; n < (unsigned int)nbuckets - 1; ++n) { - float lmax = -std::numeric_limits::max(); - float rmin = std::numeric_limits::max(); + double lmax = -std::numeric_limits::max(); + double rmin = std::numeric_limits::max(); for (unsigned int m = 0; m <= n; ++m) { @@ -372,14 +369,15 @@ private: // JB : added if (...) to stop floating point error if rmin is unset // this happens when some buckets are empty (bad volume calc) // - if (lmax != -std::numeric_limits::max() && rmin != std::numeric_limits::max()) + if (lmax != -std::numeric_limits::max() && + rmin != std::numeric_limits::max()) { sum += b[d][n].Cnt; - float lvol = (lmax - min[d]) / ext[d]; - float rvol = (max[d] - rmin) / ext[d]; + double lvol = (lmax - min[d]) / ext[d]; + double rvol = (max[d] - rmin) / ext[d]; - float c = lvol * sum + rvol * (size - sum); + double c = lvol * sum + rvol * (size - sum); if (sum > 0 && sum < size && c < cost) { @@ -391,7 +389,7 @@ private: } } - if (cost != std::numeric_limits::max()) + if (cost != std::numeric_limits::max()) { mid = std::partition(begin, end, LeftPredicate(dim, plane)); } @@ -405,12 +403,12 @@ private: std::nth_element(begin, mid, end, CenterOrder(dim)); } - float lmin[3], lmax[3], rmin[3], rmax[3]; + double lmin[3], lmax[3], rmin[3], rmax[3]; FindMinMax(begin, mid, lmin, lmax); FindMinMax(mid, end, rmin, rmax); - float clip[2] = { lmax[dim], rmin[dim] }; + double clip[2] = { lmax[dim], rmin[dim] }; vtkCellTreeLocator::vtkCellTreeNode child[2]; child[0].MakeLeaf(begin - &(this->m_pc[0]), mid - begin); @@ -436,13 +434,13 @@ public: double cellBounds[6]; this->m_pc.resize(size); - float min[3] = { std::numeric_limits::max(), std::numeric_limits::max(), - std::numeric_limits::max() }; + double min[3] = { std::numeric_limits::max(), std::numeric_limits::max(), + std::numeric_limits::max() }; - float max[3] = { - -std::numeric_limits::max(), - -std::numeric_limits::max(), - -std::numeric_limits::max(), + double max[3] = { + -std::numeric_limits::max(), + -std::numeric_limits::max(), + -std::numeric_limits::max(), }; for (vtkIdType i = 0; i < size; ++i) @@ -616,7 +614,15 @@ void vtkCellTreeLocator::BuildLocator() //------------------------------------------------------------------------------ vtkIdType vtkCellTreeLocator::FindCell( - double pos[3], double, vtkGenericCell* cell, double pcoords[3], double* weights) + double pos[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) +{ + int subId; + return this->FindCell(pos, tol2, cell, subId, pcoords, weights); +} + +//------------------------------------------------------------------------------ +vtkIdType vtkCellTreeLocator::FindCell( + double pos[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { if (this->Tree == nullptr) { @@ -624,14 +630,8 @@ vtkIdType vtkCellTreeLocator::FindCell( } double dist2; - int subId; - - const float _pos[3] = { static_cast(pos[0]), static_cast(pos[1]), - static_cast(pos[2]) }; - vtkCellPointTraversal pt(*(this->Tree), _pos); - - // bool found = false; + vtkCellPointTraversal pt(*(this->Tree), pos); while (const vtkCellTreeNode* n = pt.Next()) { const unsigned int* begin = &(this->Tree->Leaves[n->Start()]); @@ -715,7 +715,7 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] } // Ok, setup a stack and various params nodeStack ns; - double closest_intersection = VTK_FLOAT_MAX; + double closest_intersection = VTK_DOUBLE_MAX; bool HIT = false; // setup our axis optimized ray box edge stuff int axis = getDominantAxis(ray_vec); @@ -851,7 +851,7 @@ bool vtkCellTreeLocator::RayMinMaxT( { double tT; // X-Axis - float bounds[6]; + double bounds[6]; bounds[0] = this->Tree->DataBBox[0]; bounds[1] = this->Tree->DataBBox[1]; @@ -1178,13 +1178,13 @@ void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], d { nearNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex()); farNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex() + 1); - rDist = (tDivDirection) ? tOriginToDivPlane2 / tDivDirection : VTK_FLOAT_MAX; + rDist = (tDivDirection) ? tOriginToDivPlane2 / tDivDirection : VTK_DOUBLE_MAX; } else if (tOriginToDivPlane < 0) // origin is left of the lm { farNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex()); nearNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex() + 1); - rDist = (tDivDirection) ? tOriginToDivPlane / tDivDirection : VTK_FLOAT_MAX; + rDist = (tDivDirection) ? tOriginToDivPlane / tDivDirection : VTK_DOUBLE_MAX; } else @@ -1203,7 +1203,7 @@ void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], d { mustCheck = 1; // Ray was exactly on edge left max box. } - rDist = (tDivDirection) ? 0 / tDivDirection : VTK_FLOAT_MAX; + rDist = (tDivDirection) ? 0 / tDivDirection : VTK_DOUBLE_MAX; } else { @@ -1213,7 +1213,7 @@ void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], d { mustCheck = 1; // Ray was exactly on edge right min box. } - rDist = (tDivDirection) ? 0 / tDivDirection : VTK_FLOAT_MAX; + rDist = (tDivDirection) ? 0 / tDivDirection : VTK_DOUBLE_MAX; } } } @@ -1353,7 +1353,7 @@ void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) // vtkCellTreeNode* n0 = &this->Tree->Nodes.front(); // create a box for the root - float* DataBBox = this->Tree->DataBBox; + double* DataBBox = this->Tree->DataBBox; vtkBoundingBox lbox, rbox, rootbox(DataBBox[0], DataBBox[1], DataBBox[2], DataBBox[3], DataBBox[4], DataBBox[5]); ns.push(nodeBoxLevel(n0, boxLevel(rootbox, 0))); @@ -1403,7 +1403,7 @@ void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) // vtkCellTreeNode* n0 = &this->Tree->Nodes.front(); // create a box for the root - float* DataBBox = this->Tree->DataBBox; + double* DataBBox = this->Tree->DataBBox; vtkBoundingBox lbox, rbox, rootbox(DataBBox[0], DataBBox[1], DataBBox[2], DataBBox[3], DataBBox[4], DataBBox[5]); ns.push(nodeBoxLevel(n0, boxLevel(rootbox, 0))); diff --git a/Filters/General/vtkCellTreeLocator.h b/Filters/General/vtkCellTreeLocator.h index af6fd6a9f795..dac10fb30323 100644 --- a/Filters/General/vtkCellTreeLocator.h +++ b/Filters/General/vtkCellTreeLocator.h @@ -61,12 +61,16 @@ public: */ static vtkCellTreeLocator* New(); + ///@{ /** * Test a point to find if it is inside a cell. Returns the cellId if inside * or -1 if not. */ vtkIdType FindCell(double pos[3], double vtkNotUsed(tol2), vtkGenericCell* cell, double pcoords[3], double* weights) override; + vtkIdType FindCell(double pos[3], double vtkNotUsed(tol2), vtkGenericCell* cell, int& subId, + double pcoords[3], double* weights) override; + ///@} /** * Return intersection point (if any) AND the cell which was intersected by @@ -82,13 +86,8 @@ public: */ void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; - /* - if the borland compiler is ever removed, we can use these declarations - instead of reimplementaing the calls in this subclass - using vtkAbstractCellLocator::IntersectWithLine; - using vtkAbstractCellLocator::FindClosestPoint; - using vtkAbstractCellLocator::FindClosestPointWithinRadius; - */ + using vtkAbstractCellLocator::FindClosestPoint; + using vtkAbstractCellLocator::FindClosestPointWithinRadius; /** * reimplemented from vtkAbstractCellLocator to support bad compilers @@ -150,7 +149,7 @@ public: ///@} public: - float DataBBox[6]; // This store the bounding values of the dataset + double DataBBox[6]; // This store the bounding values of the dataset }; /** @@ -168,25 +167,24 @@ public: public: protected: unsigned int Index; - float LeftMax; // left max value - float RightMin; // right min value + double LeftMax; // left max value + double RightMin; // right min value unsigned int Sz; // size unsigned int St; // start - friend class vtkCellTree; friend class vtkCellPointTraversal; friend class vtkCellTreeBuilder; public: - void MakeNode(unsigned int left, unsigned int d, float b[2]); + void MakeNode(unsigned int left, unsigned int d, double b[2]); void SetChildren(unsigned int left); bool IsNode() const; unsigned int GetLeftChildIndex() const; unsigned int GetRightChildIndex() const; unsigned int GetDimension() const; - const float& GetLeftMaxValue() const; - const float& GetRightMinValue() const; + const double& GetLeftMaxValue() const; + const double& GetRightMinValue() const; void MakeLeaf(unsigned int start, unsigned int size); bool IsLeaf() const; unsigned int Start() const; -- GitLab From 10d7d25a144f7e6ae2565ea38f111151878db2af Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 19 Apr 2022 20:02:24 -0400 Subject: [PATCH 0042/1015] vtkAbstractCellLocator: Ensure correctness for FindCell Before a FindCell query, call IsInBounds to ensure correctness. Also, for vtkStaticCellLocator use IsInBounds instead of vtkMath::PointIsWithinBounds. The reason behind this non-easily seen outcome is that PointIsWithinBounds validates that the given parameters are not null before actually calculating the result that we want. With this change on a specific streamlines experiment PointIsWithinBounds took 1.810 sec, IsInBounds took 0.860 sec. The speedup is 1.810 sec / 0.860 sec = 2.15 times better. --- Common/DataModel/vtkAbstractCellLocator.cxx | 9 +++- Common/DataModel/vtkAbstractCellLocator.h | 2 + Common/DataModel/vtkCellLocator.cxx | 14 +++--- Common/DataModel/vtkStaticCellLocator.cxx | 47 ++++++++------------- Filters/FlowPaths/vtkModifiedBSPTree.cxx | 18 ++++---- Filters/General/vtkCellTreeLocator.cxx | 6 +++ 6 files changed, 47 insertions(+), 49 deletions(-) diff --git a/Common/DataModel/vtkAbstractCellLocator.cxx b/Common/DataModel/vtkAbstractCellLocator.cxx index eda0127b97cd..7edb3054008e 100644 --- a/Common/DataModel/vtkAbstractCellLocator.cxx +++ b/Common/DataModel/vtkAbstractCellLocator.cxx @@ -16,7 +16,6 @@ #include "vtkAbstractCellLocator.h" #include "vtkCellArray.h" -#include "vtkDataArray.h" #include "vtkDataArrayRange.h" #include "vtkDataSet.h" #include "vtkGenericCell.h" @@ -26,7 +25,6 @@ #include "vtkObjectFactory.h" #include "vtkPoints.h" #include "vtkPolyData.h" -#include "vtkSMPTools.h" #include "vtkUnstructuredGrid.h" //------------------------------------------------------------------------------ @@ -82,6 +80,13 @@ void vtkAbstractCellLocator::UpdateInternalWeights() this->WeightsTime.Modified(); } +//------------------------------------------------------------------------------ +bool vtkAbstractCellLocator::IsInBounds(const double bounds[6], const double x[3], const double tol) +{ + return (bounds[0] - tol) <= x[0] && x[0] <= (bounds[1] + tol) && (bounds[2] - tol) <= x[1] && + x[1] <= (bounds[3] + tol) && (bounds[4] - tol) <= x[2] && x[2] <= (bounds[5] + tol); +} + //------------------------------------------------------------------------------ int vtkAbstractCellLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId) diff --git a/Common/DataModel/vtkAbstractCellLocator.h b/Common/DataModel/vtkAbstractCellLocator.h index 4de955ac8eae..13cd29e073c4 100644 --- a/Common/DataModel/vtkAbstractCellLocator.h +++ b/Common/DataModel/vtkAbstractCellLocator.h @@ -298,6 +298,8 @@ protected: */ vtkTimeStamp WeightsTime; + static bool IsInBounds(const double bounds[6], const double x[3], const double tol = 0.0); + /** * This array is resized so that it can fit points from the cell hosting the most in the input * data set. Resizing is done in `UpdateInternalWeights`. diff --git a/Common/DataModel/vtkCellLocator.cxx b/Common/DataModel/vtkCellLocator.cxx index c2149337f261..7320d8e163e2 100644 --- a/Common/DataModel/vtkCellLocator.cxx +++ b/Common/DataModel/vtkCellLocator.cxx @@ -1207,6 +1207,7 @@ void vtkCellLocator::BuildLocatorInternal() vtkErrorMacro(<< "No cells to subdivide"); return; } + this->DataSet->ComputeBounds(); // Make sure the appropriate data is available // @@ -1645,12 +1646,6 @@ double vtkCellLocator::Distance2ToBounds(const double x[3], double bounds[6]) return distance; } //------------------------------------------------------------------------------ -static bool vtkCellLocator_Inside(const double bounds[6], const double point[3]) -{ - return bounds[0] <= point[0] && point[0] <= bounds[1] && bounds[2] <= point[1] && - point[1] <= bounds[3] && bounds[4] <= point[2] && point[2] <= bounds[5]; -} -//------------------------------------------------------------------------------ vtkIdType vtkCellLocator::FindCell( double x[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) { @@ -1672,6 +1667,11 @@ vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGene // empty tree, most likely there are no cells in the input data set return -1; } + // check if x outside of bounds + if (!vtkAbstractCellLocator::IsInBounds(this->DataSet->GetBounds(), x)) + { + return -1; + } int leafStart = this->NumberOfOctants - this->NumberOfDivisions * this->NumberOfDivisions * this->NumberOfDivisions; @@ -1718,7 +1718,7 @@ vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGene else { this->DataSet->GetCellBounds(cellId, cellBounds); - if (vtkCellLocator_Inside(cellBounds, x)) + if (vtkCellLocator::IsInBounds(cellBounds, x)) { this->DataSet->GetCell(cellId, cell); if (cell->EvaluatePosition(x, nullptr, subId, pcoords, dist2, weights) == 1) diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 9dbce1e89654..f353aa33481b 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -244,6 +244,7 @@ struct vtkCellProcessor { vtkCellBinner* Binner; vtkDataSet* DataSet; + double DataSetBounds[6]; double* CellBounds; vtkIdType* Counts; vtkIdType NumFragments; @@ -258,6 +259,7 @@ struct vtkCellProcessor : Binner(cb) { this->DataSet = cb->DataSet; + this->DataSet->GetBounds(this->DataSetBounds); this->CellBounds = cb->CellBounds; this->Counts = cb->Counts; this->NumCells = cb->NumCells; @@ -275,8 +277,6 @@ struct vtkCellProcessor virtual ~vtkCellProcessor() = default; // Satisfy cell locator API - virtual vtkIdType FindCell( - const double pos[3], vtkGenericCell* cell, double pcoords[3], double* weights) = 0; virtual vtkIdType FindCell( const double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) = 0; virtual void FindCellsWithinBounds(double* bbox, vtkIdList* cells) = 0; @@ -341,23 +341,13 @@ struct CellProcessor : public vtkCellProcessor binBounds[5] = binBounds[4] + h[2]; } - int IsInBinBounds(double binBounds[6], double x[3], double binTol = 0.0) + static bool IsInBounds(const double bounds[6], const double x[3], const double tol = 0.0) { - if ((binBounds[0] - binTol) <= x[0] && x[0] <= (binBounds[1] + binTol) && - (binBounds[2] - binTol) <= x[1] && x[1] <= (binBounds[3] + binTol) && - (binBounds[4] - binTol) <= x[2] && x[2] <= (binBounds[5] + binTol)) - { - return 1; - } - else - { - return 0; - } + return (bounds[0] - tol) <= x[0] && x[0] <= (bounds[1] + tol) && (bounds[2] - tol) <= x[1] && + x[1] <= (bounds[3] + tol) && (bounds[4] - tol) <= x[2] && x[2] <= (bounds[5] + tol); } // Methods to satisfy vtkCellProcessor virtual API - vtkIdType FindCell( - const double pos[3], vtkGenericCell* cell, double pcoords[3], double* weights) override; vtkIdType FindCell(const double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) override; void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; @@ -487,20 +477,16 @@ struct MapOffsets }; // MapOffsets -//------------------------------------------------------------------------------ -template -vtkIdType CellProcessor::FindCell( - const double pos[3], vtkGenericCell* cell, double pcoords[3], double* weights) -{ - int subId; - return this->FindCell(pos, cell, subId, pcoords, weights); -} - //------------------------------------------------------------------------------ template vtkIdType CellProcessor::FindCell( const double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { + // check if pos outside of bounds + if (!CellProcessor::IsInBounds(this->DataSetBounds, pos)) + { + return -1; + } vtkIdType binId = this->Binner->GetBinIndex(pos); T numIds = this->GetNumberOfIds(binId); @@ -515,7 +501,7 @@ vtkIdType CellProcessor::FindCell( { const CellFragments* cellIds = this->GetIds(binId); double tol = this->Binner->binTol; - double dist2, *bounds, delta[3] = { tol, tol, tol }; + double dist2, *bounds; vtkIdType cellId; for (T j = 0; j < numIds; j++) @@ -523,7 +509,8 @@ vtkIdType CellProcessor::FindCell( cellId = cellIds[j].CellId; bounds = this->CellBounds + 6 * cellId; - if (vtkMath::PointIsWithinBounds(pos, bounds, delta)) + // IsInBounds is identical to vtkMath::PointIsWithinBounds without the invalid values check + if (CellProcessor::IsInBounds(bounds, pos, tol)) { this->DataSet->GetCell(cellId, cell); if (cell->EvaluatePosition(pos, nullptr, subId, pcoords, dist2, weights) == 1) @@ -1154,7 +1141,7 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], { // Make sure that intersection occurs within this bin or else spurious cell // intersections can occur behind this bin which are not the correct answer. - if (!this->IsInBinBounds(binBounds, x, binTol)) + if (!CellProcessor::IsInBounds(binBounds, x, binTol)) { cellHasBeenVisited[cId] = 0; // mark the cell non-visited } @@ -1282,10 +1269,10 @@ void vtkStaticCellLocator::FreeSearchStructure() //------------------------------------------------------------------------------ vtkIdType vtkStaticCellLocator::FindCell( - double pos[3], double, vtkGenericCell* cell, double pcoords[3], double* weights) + double pos[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) { int subId; - return this->FindCell(pos, 0 /*not used*/, cell, subId, pcoords, weights); + return this->FindCell(pos, tol2, cell, subId, pcoords, weights); } //------------------------------------------------------------------------------ @@ -1297,7 +1284,7 @@ vtkIdType vtkStaticCellLocator::FindCell( { return -1; } - return this->Processor->FindCell(pos, cell, pcoords, weights); + return this->Processor->FindCell(pos, cell, subId, pcoords, weights); } //------------------------------------------------------------------------------ diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.cxx b/Filters/FlowPaths/vtkModifiedBSPTree.cxx index c44fa07f3509..7704b94ce281 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.cxx +++ b/Filters/FlowPaths/vtkModifiedBSPTree.cxx @@ -192,6 +192,7 @@ void vtkModifiedBSPTree::BuildLocatorInternal() vtkDebugMacro(<< "No Cells to divide"); numCells = 0; } + this->DataSet->ComputeBounds(); vtkDebugMacro(<< "Creating BSPTree for " << numCells << " cells"); // @@ -1007,8 +1008,6 @@ int vtkModifiedBSPTree::IntersectCellInternal(vtkIdType cell_ID, const double p1 // FindCell stuff ////////////////////////////////////////////////////////////////////////////// //------------------------------------------------------------------------------ -bool vtkModifiedBSPTree_Inside(double bounds[6], double point[3]); -//------------------------------------------------------------------------------ vtkIdType vtkModifiedBSPTree::FindCell( double x[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) { @@ -1022,6 +1021,11 @@ vtkIdType vtkModifiedBSPTree::FindCell( // this->BuildLocatorIfNeeded(); // + // check if x outside of bounds + if (!vtkAbstractCellLocator::IsInBounds(this->DataSet->GetBounds(), x)) + { + return -1; + } nodestack ns; BSPNode* node; ns.push(this->mRoot); @@ -1046,7 +1050,7 @@ vtkIdType vtkModifiedBSPTree::FindCell( { int cell_ID = node->sorted_cell_lists[0][i]; // - if (vtkModifiedBSPTree_Inside(CellBounds[cell_ID], x)) + if (vtkAbstractCellLocator::IsInBounds(CellBounds[cell_ID], x)) { this->DataSet->GetCell(cell_ID, cell); if (cell->EvaluatePosition(x, closestPoint, subId, pcoords, dist2, weights) == 1) @@ -1066,7 +1070,7 @@ bool vtkModifiedBSPTree::InsideCellBounds(double x[3], vtkIdType cell_ID) // this->BuildLocatorIfNeeded(); // - return vtkModifiedBSPTree_Inside(this->CellBounds[cell_ID], x); + return vtkAbstractCellLocator::IsInBounds(this->CellBounds[cell_ID], x); } //------------------------------------------------------------------------------ vtkIdListCollection* vtkModifiedBSPTree::GetLeafNodeCellInformation() @@ -1458,9 +1462,3 @@ bool BSPNode::Inside(double point[3]) const this->Bounds[2] <= point[1] && point[1] <= this->Bounds[3] && this->Bounds[4] <= point[2] && point[2] <= this->Bounds[5]; } -//------------------------------------------------------------------------------ -bool vtkModifiedBSPTree_Inside(double bounds[6], double point[3]) -{ - return bounds[0] <= point[0] && point[0] <= bounds[1] && bounds[2] <= point[1] && - point[1] <= bounds[3] && bounds[4] <= point[2] && point[2] <= bounds[5]; -} diff --git a/Filters/General/vtkCellTreeLocator.cxx b/Filters/General/vtkCellTreeLocator.cxx index 1d80220b4ddc..3fd0dd4c1e2c 100644 --- a/Filters/General/vtkCellTreeLocator.cxx +++ b/Filters/General/vtkCellTreeLocator.cxx @@ -589,6 +589,7 @@ void vtkCellTreeLocator::BuildLocatorInternal() vtkErrorMacro(<< " No Cells in the data set\n"); return; } + this->DataSet->ComputeBounds(); // if (this->CacheCellBounds) { @@ -628,6 +629,11 @@ vtkIdType vtkCellTreeLocator::FindCell( { return -1; } + // check if pos outside of bounds + if (!vtkAbstractCellLocator::IsInBounds(this->DataSet->GetBounds(), pos)) + { + return -1; + } double dist2; -- GitLab From 659efb107e672b2f6c5ff4229fae5f16dcdcfd36 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Fri, 15 Apr 2022 15:28:52 -0400 Subject: [PATCH 0043/1015] vtkStaticCellLocator: Improve IntersectWithLine/FindCellsAlongLine std::vector is a better option if you want quick allocation and access the array a few times. https://stackoverflow.com/a/71886956/14140986 --- Common/DataModel/vtkStaticCellLocator.cxx | 18 +++++++----------- 1 file changed, 7 insertions(+), 11 deletions(-) diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index f353aa33481b..253919514109 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -20,18 +20,14 @@ #include "vtkDoubleArray.h" #include "vtkGenericCell.h" #include "vtkIdList.h" -#include "vtkIntArray.h" #include "vtkMath.h" #include "vtkMergePoints.h" #include "vtkObjectFactory.h" #include "vtkPlane.h" #include "vtkPoints.h" #include "vtkPolyData.h" -#include "vtkSMPThreadLocal.h" -#include "vtkSMPThreadLocalObject.h" #include "vtkSMPTools.h" -#include #include #include @@ -608,7 +604,7 @@ void CellProcessor::FindCellsAlongLine( // Initialize intersection query array if necessary. This is done // locally to ensure thread safety. - std::vector cellHasBeenVisited(this->NumCells, 0); + std::vector cellHasBeenVisited(this->NumCells, false); // Get the i-j-k point of intersection and bin index. This is // clamped to the boundary of the locator. Also get the exit bin @@ -648,9 +644,9 @@ void CellProcessor::FindCellsAlongLine( for (i = 0; i < numCellsInBin; i++) { cId = cellIds[i].CellId; - if (cellHasBeenVisited[cId] == 0) + if (!cellHasBeenVisited[cId]) { - cellHasBeenVisited[cId] = 1; + cellHasBeenVisited[cId] = true; // check whether we intersect the cell bounds int hitCellBounds = vtkBox::IntersectBox(this->CellBounds + (6 * cId), a0, rayDir, @@ -1086,7 +1082,7 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], // Initialize intersection query array if necessary. This is done // locally to ensure thread safety. - std::vector cellHasBeenVisited(this->NumCells, 0); + std::vector cellHasBeenVisited(this->NumCells, false); // Get the i-j-k point of intersection and bin index. This is // clamped to the boundary of the locator. @@ -1124,9 +1120,9 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], for (i = 0; i < numCellsInBin; i++) { cId = cellIds[i].CellId; - if (cellHasBeenVisited[cId] == 0) + if (!cellHasBeenVisited[cId]) { - cellHasBeenVisited[cId] = 1; + cellHasBeenVisited[cId] = true; // check whether we intersect the cell bounds int hitCellBounds = vtkBox::IntersectBox( @@ -1143,7 +1139,7 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], // intersections can occur behind this bin which are not the correct answer. if (!CellProcessor::IsInBounds(binBounds, x, binTol)) { - cellHasBeenVisited[cId] = 0; // mark the cell non-visited + cellHasBeenVisited[cId] = false; // mark the cell non-visited } else { -- GitLab From 4659e29a49034760520540f004d0bf76a2b46a4b Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 20 Apr 2022 12:24:01 -0400 Subject: [PATCH 0044/1015] InterpolatedVelocityFields: Clean-up and strategies improvements vtkAbstractInterpolatedVelocityField code has been cleaned-up and FindAndUpdateCell has been optimized to not look for a strategy but having it as an argument. vtkCellLocatorInterpolatedVelocityField and vtkInterpolatedVelocityField were basically the same thing, SnapPointOnCell was also needed in vtkCellLocatorInterpolatedVelocityField so both share pretty much the same implementation which has been moved to vtkCompositeInterpolatedVelocityField Memory allocation Improvements: Use vtkNew for members and create member variables to reduce vtkNew operations. Also, Change names of GenCell, Cell to CurrentCell, LastCell. Documentation: Improve/write documentation and fix typos Thread-safety: Call BuildCells, ComputeBounds --- ...TestMeanValueCoordinatesInterpolation2.cxx | 2 +- Common/DataModel/vtkCellLocatorStrategy.cxx | 4 +- Common/DataModel/vtkClosestPointStrategy.cxx | 28 +- Common/DataModel/vtkClosestPointStrategy.h | 8 +- Common/DataModel/vtkFindCellStrategy.h | 2 +- Common/DataModel/vtkPointSet.cxx | 4 +- ...estCellLocatorInterpolatedVelocityField.py | 4 +- .../vtkAMRInterpolatedVelocityField.cxx | 16 +- .../vtkAbstractInterpolatedVelocityField.cxx | 294 +++++++----------- .../vtkAbstractInterpolatedVelocityField.h | 45 ++- ...tkCellLocatorInterpolatedVelocityField.cxx | 121 +------ .../vtkCellLocatorInterpolatedVelocityField.h | 50 --- .../vtkCompositeInterpolatedVelocityField.cxx | 103 ++++++ .../vtkCompositeInterpolatedVelocityField.h | 35 ++- .../vtkInterpolatedVelocityField.cxx | 102 ------ .../FlowPaths/vtkInterpolatedVelocityField.h | 42 --- Filters/FlowPaths/vtkStreamTracer.cxx | 17 +- 17 files changed, 320 insertions(+), 557 deletions(-) diff --git a/Common/DataModel/Testing/Cxx/TestMeanValueCoordinatesInterpolation2.cxx b/Common/DataModel/Testing/Cxx/TestMeanValueCoordinatesInterpolation2.cxx index 0f740b19c635..d251bc16a8b0 100644 --- a/Common/DataModel/Testing/Cxx/TestMeanValueCoordinatesInterpolation2.cxx +++ b/Common/DataModel/Testing/Cxx/TestMeanValueCoordinatesInterpolation2.cxx @@ -1,7 +1,7 @@ /*========================================================================= Program: Visualization Toolkit - Module: TestMeanValueCoordinatesInterpolation.cxx + Module: TestMeanValueCoordinatesInterpolation2.cxx Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen All rights reserved. diff --git a/Common/DataModel/vtkCellLocatorStrategy.cxx b/Common/DataModel/vtkCellLocatorStrategy.cxx index a3449fcccf46..16eb36ab2129 100644 --- a/Common/DataModel/vtkCellLocatorStrategy.cxx +++ b/Common/DataModel/vtkCellLocatorStrategy.cxx @@ -26,8 +26,8 @@ vtkStandardNewMacro(vtkCellLocatorStrategy); //------------------------------------------------------------------------------ vtkCellLocatorStrategy::vtkCellLocatorStrategy() { - // You may ask, why this OwnsLocator rigamarole. The reason is because the - // reference counting garbage collecter gets confused when the locator, + // You may ask why this OwnsLocator rigamarole. The reason is that the + // reference counting garbage collector gets confused when the locator, // point set, and strategy are all mixed together; resulting in memory // leaks etc. this->OwnsLocator = false; diff --git a/Common/DataModel/vtkClosestPointStrategy.cxx b/Common/DataModel/vtkClosestPointStrategy.cxx index 1b71cb7e0a3e..555c51025fd1 100644 --- a/Common/DataModel/vtkClosestPointStrategy.cxx +++ b/Common/DataModel/vtkClosestPointStrategy.cxx @@ -30,17 +30,13 @@ vtkStandardNewMacro(vtkClosestPointStrategy); vtkClosestPointStrategy::vtkClosestPointStrategy() { // Preallocate for performance - this->PointIds = vtkIdList::New(); this->PointIds->Allocate(16); - this->Neighbors = vtkIdList::New(); this->Neighbors->Allocate(32); - this->CellIds = vtkIdList::New(); this->CellIds->Allocate(32); - this->NearPointIds = vtkIdList::New(); this->NearPointIds->Allocate(32); - // You may ask, why this OwnsLocator rigamarole. The reason is because the - // reference counting garbage collecter gets confused when the locator, + // You may ask why this OwnsLocator rigamarole. The reason is that the + // reference counting garbage collector gets confused when the locator, // point set, and strategy are all mixed together; resulting in memory // leaks etc. this->OwnsLocator = false; @@ -50,11 +46,6 @@ vtkClosestPointStrategy::vtkClosestPointStrategy() //------------------------------------------------------------------------------ vtkClosestPointStrategy::~vtkClosestPointStrategy() { - this->PointIds->Delete(); - this->Neighbors->Delete(); - this->CellIds->Delete(); - this->NearPointIds->Delete(); - if (this->OwnsLocator && this->PointLocator != nullptr) { this->PointLocator->Delete(); @@ -151,7 +142,9 @@ vtkIdType FindCellWalk(vtkClosestPointStrategy* self, vtkPointSet* ps, double x[ { // Check to see if we already visited this cell. if (visitedCells.find(cellId) != visitedCells.end()) + { break; + } visitedCells.insert(cellId); // Get information for the cell. @@ -171,7 +164,9 @@ vtkIdType FindCellWalk(vtkClosestPointStrategy* self, vtkPointSet* ps, double x[ ps->GetCellNeighbors(cellId, ptIds, neighbors); // If there is no next one, exit. if (neighbors->GetNumberOfIds() < 1) + { break; + } // Set the next cell as the current one and iterate. cellId = neighbors->GetId(0); cell = nullptr; @@ -209,7 +204,7 @@ vtkIdType vtkClosestPointStrategy::FindCell(double x[3], vtkCell* cell, vtkGener // Check to see if the point is within the bounds of the data. This is not // a strict check, but it is fast. const double* bounds = this->Bounds; - double tol = sqrt(tol2); + const double tol = std::sqrt(tol2); if ((x[0] < bounds[0] - tol) || (x[0] > bounds[1] + tol) || (x[1] < bounds[2] - tol) || (x[1] > bounds[3] + tol) || (x[2] < bounds[4] - tol) || (x[2] > bounds[5] + tol)) { @@ -235,7 +230,9 @@ vtkIdType vtkClosestPointStrategy::FindCell(double x[3], vtkCell* cell, vtkGener // given and search the attached cells. vtkIdType ptId = this->PointLocator->FindClosestPoint(x); if (ptId < 0) + { return -1; + } this->PointSet->GetPointCells(ptId, this->CellIds); foundCell = FindCellWalk(this, this->PointSet, x, gencell, this->CellIds, tol2, subId, pcoords, weights, this->VisitedCells, this->PointIds, this->Neighbors); @@ -244,7 +241,7 @@ vtkIdType vtkClosestPointStrategy::FindCell(double x[3], vtkCell* cell, vtkGener return foundCell; } - // It is possible that the toplogy is not fully connected as points may be + // It is possible that the topology is not fully connected as points may be // coincident. Handle this by looking at every point within the tolerance // and consider all cells connected. It has been suggested that we should // really do this coincident point check at every point as we walk through @@ -252,10 +249,9 @@ vtkIdType vtkClosestPointStrategy::FindCell(double x[3], vtkCell* cell, vtkGener // implemented, this step might become unnecessary. double ptCoord[3]; this->PointSet->GetPoint(ptId, ptCoord); - this->PointLocator->FindPointsWithinRadius(sqrt(tol2), ptCoord, this->NearPointIds); + this->PointLocator->FindPointsWithinRadius(tol, ptCoord, this->NearPointIds); this->NearPointIds->DeleteId(ptId); // Already searched this one. - vtkIdType i, numPts = this->NearPointIds->GetNumberOfIds(); - for (i = 0; i < numPts; i++) + for (vtkIdType i = 0, numPts = this->NearPointIds->GetNumberOfIds(); i < numPts; i++) { this->PointSet->GetPointCells(this->NearPointIds->GetId(i), this->CellIds); foundCell = FindCellWalk(this, this->PointSet, x, gencell, this->CellIds, tol2, subId, pcoords, diff --git a/Common/DataModel/vtkClosestPointStrategy.h b/Common/DataModel/vtkClosestPointStrategy.h index e1712290a300..463e61efaf9d 100644 --- a/Common/DataModel/vtkClosestPointStrategy.h +++ b/Common/DataModel/vtkClosestPointStrategy.h @@ -103,10 +103,10 @@ protected: ~vtkClosestPointStrategy() override; std::set VisitedCells; - vtkIdList* PointIds; - vtkIdList* Neighbors; - vtkIdList* CellIds; - vtkIdList* NearPointIds; + vtkNew PointIds; + vtkNew Neighbors; + vtkNew CellIds; + vtkNew NearPointIds; vtkAbstractPointLocator* PointLocator; bool OwnsLocator; // was the locator specified? or taken from associated point set diff --git a/Common/DataModel/vtkFindCellStrategy.h b/Common/DataModel/vtkFindCellStrategy.h index 94c18259ba76..e29c49921385 100644 --- a/Common/DataModel/vtkFindCellStrategy.h +++ b/Common/DataModel/vtkFindCellStrategy.h @@ -60,7 +60,7 @@ class VTKCOMMONDATAMODEL_EXPORT vtkFindCellStrategy : public vtkObject public: ///@{ /** - * Standard methdos for type information and printing. + * Standard methods for type information and printing. */ vtkTypeMacro(vtkFindCellStrategy, vtkObject); void PrintSelf(ostream& os, vtkIndent indent) override; diff --git a/Common/DataModel/vtkPointSet.cxx b/Common/DataModel/vtkPointSet.cxx index 5ff507116a25..7227106cdccf 100644 --- a/Common/DataModel/vtkPointSet.cxx +++ b/Common/DataModel/vtkPointSet.cxx @@ -30,8 +30,6 @@ #include "vtkSmartPointer.h" -#define VTK_CREATE(type, name) vtkSmartPointer name = vtkSmartPointer::New() - vtkStandardNewMacro(vtkPointSet); vtkStandardExtendedNewMacro(vtkPointSet); @@ -246,7 +244,7 @@ vtkIdType vtkPointSet::FindPoint(double x[3]) vtkIdType vtkPointSet::FindCell(double x[3], vtkCell* cell, vtkGenericCell* gencell, vtkIdType cellId, double tol2, int& subId, double pcoords[3], double* weights) { - VTK_CREATE(vtkClosestPointStrategy, strategy); + vtkNew strategy; strategy->Initialize(this); return strategy->FindCell(x, cell, gencell, cellId, tol2, subId, pcoords, weights); } diff --git a/Filters/FlowPaths/Testing/Python/TestCellLocatorInterpolatedVelocityField.py b/Filters/FlowPaths/Testing/Python/TestCellLocatorInterpolatedVelocityField.py index 56bcea0a1abb..3b61c5ca2b90 100755 --- a/Filters/FlowPaths/Testing/Python/TestCellLocatorInterpolatedVelocityField.py +++ b/Filters/FlowPaths/Testing/Python/TestCellLocatorInterpolatedVelocityField.py @@ -38,7 +38,7 @@ psActor.GetProperty().SetRepresentationToWireframe() rk4 = vtk.vtkRungeKutta4() bspLoc = vtk.vtkModifiedBSPTree() ivp = vtk.vtkCellLocatorInterpolatedVelocityField() -ivp.SetCellLocatorPrototype(bspLoc) +ivp.GetFindCellStrategy().SetCellLocator(bspLoc) streamer = vtk.vtkStreamTracer() streamer.SetInputData(output) streamer.SetSourceData(ps.GetOutput()) @@ -71,7 +71,7 @@ outlineActor.SetMapper(outlineMapper) # Use a vtkStaticCellLocator staticLoc = vtk.vtkStaticCellLocator() ivp2 = vtk.vtkCellLocatorInterpolatedVelocityField() -ivp2.SetCellLocatorPrototype(staticLoc) +ivp.GetFindCellStrategy().SetCellLocator(staticLoc) streamer2 = vtk.vtkStreamTracer() streamer2.SetInputData(output) streamer2.SetSourceData(ps.GetOutput()) diff --git a/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx index de5b0b96cb6f..7bedb5dc46a3 100644 --- a/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx @@ -22,8 +22,6 @@ #include "vtkPointData.h" #include "vtkUniformGrid.h" -#include - //------------------------------------------------------------------------------ namespace { @@ -93,14 +91,14 @@ int vtkAMRInterpolatedVelocityField::SelfInitialize() // Add information into the interpolation function cache. Note that no find cell strategy // is required. If no vectors are specified, use the local dataset vectors. vtkDataArray* vectors; - for (size_t cc = 0; cc < datasets.size(); ++cc) + for (auto& dataset : datasets) { - vectors = (gVectors ? gVectors - : vectors = datasets[cc] - ->GetAttributesAsFieldData(this->VectorsType) - ->GetArray(this->VectorsSelection)); + vectors = (gVectors + ? gVectors + : vectors = + dataset->GetAttributesAsFieldData(this->VectorsType)->GetArray(this->VectorsSelection)); - this->AddToFunctionCache(datasets[cc], nullptr, vectors); + this->AddToFunctionCache(dataset, nullptr, vectors); } // Indicate that the subclass has taken over initialization. @@ -167,7 +165,7 @@ int vtkAMRInterpolatedVelocityField::FunctionValues(double* x, double* f) this->LastLevel = level; this->LastId = gridId; - vtkDataSet* ds = this->AmrDataSet->GetDataSet(level, gridId); + auto ds = this->AmrDataSet->GetDataSet(level, gridId); if (!ds) { return 0; diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx index 74612a7eb1f1..9df893d97017 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx @@ -14,10 +14,9 @@ =========================================================================*/ #include "vtkAbstractInterpolatedVelocityField.h" +#include "vtkCellLocatorStrategy.h" #include "vtkClosestPointStrategy.h" -#include "vtkCompositeDataIterator.h" #include "vtkCompositeDataSet.h" -#include "vtkCompositeInterpolatedVelocityField.h" #include "vtkDataArray.h" #include "vtkDataObject.h" #include "vtkDataSet.h" @@ -29,7 +28,6 @@ #include "vtkPolyData.h" #include "vtkUnstructuredGrid.h" -#include #include //make_pair //------------------------------------------------------------------------------ @@ -39,34 +37,6 @@ vtkCxxSetObjectMacro(vtkAbstractInterpolatedVelocityField, FindCellStrategy, vtk const double vtkAbstractInterpolatedVelocityField::TOLERANCE_SCALE = 1.0E-8; const double vtkAbstractInterpolatedVelocityField::SURFACE_TOLERANCE_SCALE = 1.0E-5; -namespace -{ // anonymous - -// This is used to keep track of the find cell strategy and vector array -// associated with each dataset forming the velocity field. Note that the -// find cells strategy can be null, this means the find cell is invoked -// using the dataset's FindCell() method. -struct vtkFunctionCache -{ - vtkFindCellStrategy* Strategy; - vtkDataArray* Vectors; - - vtkFunctionCache(vtkFindCellStrategy* strategy, vtkDataArray* vectors) - : Strategy(strategy) - , Vectors(vectors) - { - } -}; - -// Cache information relative to each input dataset defining the velocity -// field. This is done for performance and to mange the different find cell -} // anonymous - -// strategies associated with each dataset. -struct vtkFunctionCacheMap : public std::map -{ -}; - //------------------------------------------------------------------------------ vtkAbstractInterpolatedVelocityField::vtkAbstractInterpolatedVelocityField() { @@ -91,12 +61,8 @@ vtkAbstractInterpolatedVelocityField::vtkAbstractInterpolatedVelocityField() this->ForceSurfaceTangentVector = false; this->SurfaceDataset = false; - this->Cell = vtkGenericCell::New(); - this->GenCell = vtkGenericCell::New(); - this->InitializationState = NOT_INITIALIZED; this->FindCellStrategy = nullptr; - this->FunctionCacheMap = new vtkFunctionCacheMap; } //------------------------------------------------------------------------------ @@ -111,31 +77,19 @@ vtkAbstractInterpolatedVelocityField::~vtkAbstractInterpolatedVelocityField() delete[] this->Weights; this->Weights = nullptr; - if (this->Cell) - { - this->Cell->Delete(); - this->Cell = nullptr; - } - - if (this->GenCell) - { - this->GenCell->Delete(); - this->GenCell = nullptr; - } - // Need to free strategies and other information associated with each // dataset. There is a special case where the strategy cannot be deleted // because is has been specified by the user. - vtkFindCellStrategy* strat; - for (auto iter = this->FunctionCacheMap->begin(); iter != this->FunctionCacheMap->end(); ++iter) + vtkFindCellStrategy* strategy; + for (auto& functionCache : this->FunctionCacheMap) { - strat = iter->second.Strategy; - if (strat != nullptr) + strategy = functionCache.second.Strategy; + if (strategy != nullptr) { - strat->Delete(); + strategy->Delete(); } } - delete this->FunctionCacheMap; + this->FunctionCacheMap.clear(); this->SetFindCellStrategy(nullptr); } @@ -144,7 +98,7 @@ vtkAbstractInterpolatedVelocityField::~vtkAbstractInterpolatedVelocityField() void vtkAbstractInterpolatedVelocityField::Initialize(vtkCompositeDataSet* compDS, int initStrategy) { // Clear the function cache, subclasses may want to put stuff into it. - this->FunctionCacheMap->clear(); + this->FunctionCacheMap.clear(); // See whether the subclass should take over the initialization process. if (this->SelfInitialize()) @@ -173,62 +127,60 @@ void vtkAbstractInterpolatedVelocityField::Initialize(vtkCompositeDataSet* compD // a vtkPointSet because the other dataset types (e.g., volumes) have their // own built-in FindCell() methods. vtkDataArray* vectors; - for (size_t cc = 0; cc < datasets.size(); ++cc) + for (auto& dataset : datasets) { if (!this->VectorsSelection) // if a selection is not specified, { // use the first one in the point set (this is a behavior for backward compatibility) - vectors = datasets[cc]->GetPointData()->GetVectors(nullptr); + vectors = dataset->GetPointData()->GetVectors(nullptr); } else { vectors = - datasets[cc]->GetAttributesAsFieldData(this->VectorsType)->GetArray(this->VectorsSelection); + dataset->GetAttributesAsFieldData(this->VectorsType)->GetArray(this->VectorsSelection); } - vtkPointSet* ps = vtkPointSet::SafeDownCast(datasets[cc]); strategyClone = nullptr; - if (ps != nullptr) + if (auto pointSet = vtkPointSet::SafeDownCast(dataset)) { strategyClone = strategy->NewInstance(); } - this->FunctionCacheMap->insert( - std::make_pair(datasets[cc], vtkFunctionCache(strategyClone, vectors))); + this->FunctionCacheMap.insert( + std::make_pair(dataset, vtkFunctionCache(strategyClone, vectors))); } // for all datasets of composite dataset // Now initialize the new strategies - for (size_t cc = 0; cc < datasets.size(); ++cc) + for (auto& dataset : datasets) { - vtkPointSet* ps = vtkPointSet::SafeDownCast(datasets[cc]); - if (ps != nullptr) + if (auto pointSet = vtkPointSet::SafeDownCast(dataset)) { - vtkFunctionCacheMap::iterator sIter = this->FunctionCacheMap->find(datasets[cc]); - strategyClone = sIter->second.Strategy; + auto datasetFunctionCacheIter = this->FunctionCacheMap.find(dataset); + strategyClone = datasetFunctionCacheIter->second.Strategy; strategyClone->CopyParameters(strategy); - strategyClone->Initialize(ps); + strategyClone->Initialize(pointSet); } } - // Now perform initialization on certain data sets - a nasty hack. - // Closest point traversal requires cell links to be built. Only build - // links if necessary. - for (size_t cc = 0; cc < datasets.size(); ++cc) + // Now perform initialization on certain data sets + for (auto& functionCache : this->FunctionCacheMap) { - vtkFunctionCacheMap::iterator sIter = this->FunctionCacheMap->find(datasets[cc]); - if (sIter->second.Strategy != nullptr && - vtkClosestPointStrategy::SafeDownCast(sIter->second.Strategy) != nullptr) + auto& dataset = functionCache.first; + dataset->ComputeBounds(); + if (auto polyData = vtkPolyData::SafeDownCast(dataset)) { - vtkUnstructuredGrid* ug = vtkUnstructuredGrid::SafeDownCast(datasets[cc]); - vtkPolyData* pd = vtkPolyData::SafeDownCast(datasets[cc]); - - if (ug != nullptr) + polyData->BuildCells(); + } + if (functionCache.second.Strategy != nullptr && + vtkClosestPointStrategy::SafeDownCast(functionCache.second.Strategy) != nullptr) + { + if (auto ugrid = vtkUnstructuredGrid::SafeDownCast(dataset)) { - ug->BuildLinks(); + ugrid->BuildLinks(); } - else if (pd != nullptr) + else if (auto polyData = vtkPolyData::SafeDownCast(dataset)) { - pd->BuildLinks(); + polyData->BuildLinks(); } } } @@ -256,10 +208,10 @@ int vtkAbstractInterpolatedVelocityField::FunctionValues(vtkDataSet* dataset, do // Retrieve cached function array vtkDataArray* vectors = nullptr; - vtkFunctionCacheMap::iterator sIter = this->FunctionCacheMap->find(dataset); - if (sIter != this->FunctionCacheMap->end()) + auto datasetFunctionCacheIter = this->FunctionCacheMap.find(dataset); + if (datasetFunctionCacheIter != this->FunctionCacheMap.end()) { - vectors = sIter->second.Vectors; + vectors = datasetFunctionCacheIter->second.Vectors; } if (!vectors) @@ -269,11 +221,9 @@ int vtkAbstractInterpolatedVelocityField::FunctionValues(vtkDataSet* dataset, do } // Compute function values for the dataset - int i, j, numPts, id; - double vec[3]; f[0] = f[1] = f[2] = 0.0; - if (!this->FindAndUpdateCell(dataset, x)) + if (!this->FindAndUpdateCell(dataset, datasetFunctionCacheIter->second.Strategy, x)) { vectors = nullptr; return 0; @@ -282,16 +232,14 @@ int vtkAbstractInterpolatedVelocityField::FunctionValues(vtkDataSet* dataset, do // if the cell is valid if (this->LastCellId >= 0) { - numPts = this->GenCell->GetNumberOfPoints(); - // interpolate the vectors if (this->VectorsType == vtkDataObject::POINT) { - for (j = 0; j < numPts; j++) + double vec[3]; + for (vtkIdType j = 0, numPts = this->CurrentCell->GetNumberOfPoints(); j < numPts; j++) { - id = this->GenCell->PointIds->GetId(j); - vectors->GetTuple(id, vec); - for (i = 0; i < 3; i++) + vectors->GetTuple(this->CurrentCell->PointIds->GetId(j), vec); + for (vtkIdType i = 0; i < 3; i++) { f[i] += vec[i] * this->Weights[j]; } @@ -304,9 +252,8 @@ int vtkAbstractInterpolatedVelocityField::FunctionValues(vtkDataSet* dataset, do if (this->ForceSurfaceTangentVector) { - vtkNew ptIds; - dataset->GetCellPoints(this->LastCellId, ptIds); - if (ptIds->GetNumberOfIds() < 3) + dataset->GetCellPoints(this->LastCellId, this->PointIds); + if (this->PointIds->GetNumberOfIds() < 3) { vtkErrorMacro(<< "Cannot compute normal on cells with less than 3 points"); } @@ -315,30 +262,23 @@ int vtkAbstractInterpolatedVelocityField::FunctionValues(vtkDataSet* dataset, do double p1[3]; double p2[3]; double p3[3]; - double normal[3]; - double v1[3], v2[3]; - double k; + dataset->GetPoint(this->PointIds->GetId(0), p1); + dataset->GetPoint(this->PointIds->GetId(1), p2); + dataset->GetPoint(this->PointIds->GetId(2), p3); - dataset->GetPoint(ptIds->GetId(0), p1); - dataset->GetPoint(ptIds->GetId(1), p2); - dataset->GetPoint(ptIds->GetId(2), p3); - - // Compute othogonal component - v1[0] = p2[0] - p1[0]; - v1[1] = p2[1] - p1[1]; - v1[2] = p2[2] - p1[2]; - v2[0] = p3[0] - p1[0]; - v2[1] = p3[1] - p1[1]; - v2[2] = p3[2] - p1[2]; + // Compute orthogonal component + const double v1[3] = { p2[0] - p1[0], p2[1] - p1[1], p2[2] - p1[2] }; + const double v2[3] = { p3[0] - p1[0], p3[1] - p1[1], p3[2] - p1[2] }; + double normal[3]; vtkMath::Cross(v1, v2, normal); vtkMath::Normalize(normal); - k = vtkMath::Dot(normal, f); + const double k = vtkMath::Dot(normal, f); - // Remove non orthogonal component. - f[0] = f[0] - (normal[0] * k); - f[1] = f[1] - (normal[1] * k); - f[2] = f[2] - (normal[2] * k); + // Remove non-orthogonal component. + f[0] -= (normal[0] * k); + f[1] -= (normal[1] * k); + f[2] -= (normal[2] * k); } } @@ -372,7 +312,8 @@ bool vtkAbstractInterpolatedVelocityField::CheckPCoords(double pcoords[3]) } //------------------------------------------------------------------------------ -bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell(vtkDataSet* dataset, double* x) +bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell( + vtkDataSet* dataset, vtkFindCellStrategy* strategy, double* x) { double tol2, dist2; if (this->SurfaceDataset) @@ -397,7 +338,7 @@ bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell(vtkDataSet* dataset { // Use cache cell only if point is inside // or , with surface , not far and in pccords - int ret = this->GenCell->EvaluatePosition( + int ret = this->CurrentCell->EvaluatePosition( x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); if (ret == -1 || (ret == 0 && !this->SurfaceDataset) || (this->SurfaceDataset && (dist2 > tol2 || !this->CheckPCoords(this->LastPCoords)))) @@ -409,23 +350,18 @@ bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell(vtkDataSet* dataset { this->CacheMiss++; - dataset->GetCell(this->LastCellId, this->Cell); + dataset->GetCell(this->LastCellId, this->LastCell); - // Search around current cached cell to see if there is a cell within tolerance - vtkFindCellStrategy* strategy = nullptr; - vtkFunctionCacheMap::iterator sIter = this->FunctionCacheMap->find(dataset); - strategy = (sIter != this->FunctionCacheMap->end() ? sIter->second.Strategy : nullptr); - - this->LastCellId = ((strategy == nullptr) - ? dataset->FindCell(x, this->Cell, this->GenCell, this->LastCellId, tol2, + this->LastCellId = (strategy == nullptr + ? dataset->FindCell(x, this->LastCell, this->CurrentCell, this->LastCellId, tol2, this->LastSubId, this->LastPCoords, this->Weights) - : strategy->FindCell(x, this->Cell, this->GenCell, this->LastCellId, tol2, + : strategy->FindCell(x, this->LastCell, this->CurrentCell, this->LastCellId, tol2, this->LastSubId, this->LastPCoords, this->Weights)); if (this->LastCellId != -1 && (!this->SurfaceDataset || this->CheckPCoords(this->LastPCoords))) { - dataset->GetCell(this->LastCellId, this->GenCell); + dataset->GetCell(this->LastCellId, this->CurrentCell); found = true; } } @@ -441,19 +377,15 @@ bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell(vtkDataSet* dataset { // if the cell is not found in cache, do a global search (ignore initial // cell if there is one) - vtkFindCellStrategy* strategy = nullptr; - vtkFunctionCacheMap::iterator sIter = this->FunctionCacheMap->find(dataset); - strategy = (sIter != this->FunctionCacheMap->end() ? sIter->second.Strategy : nullptr); - this->LastCellId = - ((strategy == nullptr) ? dataset->FindCell(x, nullptr, this->GenCell, -1, tol2, - this->LastSubId, this->LastPCoords, this->Weights) - : strategy->FindCell(x, nullptr, this->GenCell, -1, tol2, - this->LastSubId, this->LastPCoords, this->Weights)); + (strategy == nullptr ? dataset->FindCell(x, nullptr, this->CurrentCell, -1, tol2, + this->LastSubId, this->LastPCoords, this->Weights) + : strategy->FindCell(x, nullptr, this->CurrentCell, -1, tol2, + this->LastSubId, this->LastPCoords, this->Weights)); if (this->LastCellId != -1 && (!this->SurfaceDataset || this->CheckPCoords(this->LastPCoords))) { - dataset->GetCell(this->LastCellId, this->GenCell); + dataset->GetCell(this->LastCellId, this->CurrentCell); } else { @@ -467,15 +399,14 @@ bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell(vtkDataSet* dataset return false; } - vtkNew cellList; - dataset->GetPointCells(idPoint, cellList); + dataset->GetPointCells(idPoint, this->CellList); double minDist2 = dataset->GetLength() * dataset->GetLength(); vtkIdType minDistId = -1; - for (vtkIdType idCell = 0; idCell < cellList->GetNumberOfIds(); idCell++) + for (vtkIdType idCell = 0; idCell < this->CellList->GetNumberOfIds(); idCell++) { - this->LastCellId = cellList->GetId(idCell); - dataset->GetCell(this->LastCellId, this->GenCell); - int ret = this->GenCell->EvaluatePosition( + this->LastCellId = this->CellList->GetId(idCell); + dataset->GetCell(this->LastCellId, this->CurrentCell); + int ret = this->CurrentCell->EvaluatePosition( x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); if (ret != -1 && dist2 < minDist2) { @@ -492,30 +423,29 @@ bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell(vtkDataSet* dataset // Recover closest cell info this->LastCellId = minDistId; - dataset->GetCell(this->LastCellId, this->GenCell); - int ret = this->GenCell->EvaluatePosition( + dataset->GetCell(this->LastCellId, this->CurrentCell); + int ret = this->CurrentCell->EvaluatePosition( x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); // Find Point being not perfect to find cell, check for closer cells - vtkNew boundaryPoints; - vtkNew neighCells; bool edge = false; bool closer; while (true) { - this->GenCell->CellBoundary(this->LastSubId, this->LastPCoords, boundaryPoints); - dataset->GetCellNeighbors(this->LastCellId, boundaryPoints, neighCells); - if (neighCells->GetNumberOfIds() == 0) + this->CurrentCell->CellBoundary(this->LastSubId, this->LastPCoords, this->BoundaryPoints); + dataset->GetCellNeighbors(this->LastCellId, this->BoundaryPoints, this->NeighCells); + if (this->NeighCells->GetNumberOfIds() == 0) { edge = true; break; } closer = false; - for (vtkIdType neighCellId = 0; neighCellId < neighCells->GetNumberOfIds(); neighCellId++) + for (vtkIdType neighCellId = 0; neighCellId < this->NeighCells->GetNumberOfIds(); + neighCellId++) { - this->LastCellId = neighCells->GetId(neighCellId); - dataset->GetCell(this->LastCellId, this->GenCell); - ret = this->GenCell->EvaluatePosition( + this->LastCellId = this->NeighCells->GetId(neighCellId); + dataset->GetCell(this->LastCellId, this->CurrentCell); + ret = this->CurrentCell->EvaluatePosition( x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); if (ret != -1 && dist2 < minDist2) { @@ -534,8 +464,8 @@ bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell(vtkDataSet* dataset if (!edge) { this->LastCellId = minDistId; - dataset->GetCell(this->LastCellId, this->GenCell); - this->GenCell->EvaluatePosition( + dataset->GetCell(this->LastCellId, this->CurrentCell); + this->CurrentCell->EvaluatePosition( x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); } if (minDist2 > tol2 || (!this->CheckPCoords(this->LastPCoords) && edge)) @@ -553,6 +483,7 @@ bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell(vtkDataSet* dataset } return true; } + //------------------------------------------------------------------------------ int vtkAbstractInterpolatedVelocityField::GetLastWeights(double* w) { @@ -561,7 +492,7 @@ int vtkAbstractInterpolatedVelocityField::GetLastWeights(double* w) return 0; } - int numPts = this->GenCell->GetNumberOfPoints(); + int numPts = this->CurrentCell->GetNumberOfPoints(); for (int i = 0; i < numPts; i++) { w[i] = this->Weights[i]; @@ -589,13 +520,13 @@ int vtkAbstractInterpolatedVelocityField::GetLastLocalCoordinates(double pcoords void vtkAbstractInterpolatedVelocityField::FastCompute(vtkDataArray* vectors, double f[3]) { int pntIdx; - int numPts = this->GenCell->GetNumberOfPoints(); + int numPts = this->CurrentCell->GetNumberOfPoints(); double vector[3]; f[0] = f[1] = f[2] = 0.0; for (int i = 0; i < numPts; i++) { - pntIdx = this->GenCell->PointIds->GetId(i); + pntIdx = this->CurrentCell->PointIds->GetId(i); vectors->GetTuple(pntIdx, vector); f[0] += vector[0] * this->Weights[i]; f[1] += vector[1] * this->Weights[i]; @@ -612,7 +543,7 @@ bool vtkAbstractInterpolatedVelocityField::InterpolatePoint(vtkPointData* outPD, } outPD->InterpolatePoint( - this->LastDataSet->GetPointData(), outIndex, this->GenCell->PointIds, this->Weights); + this->LastDataSet->GetPointData(), outIndex, this->CurrentCell->PointIds, this->Weights); return true; } @@ -632,34 +563,33 @@ void vtkAbstractInterpolatedVelocityField::CopyParameters( // prototype. In a threaded situation, there must be separate strategies // for each interpolated velocity field. this->InitializationState = from->InitializationState; - this->FunctionCacheMap->clear(); - vtkFunctionCacheMap::iterator cIter = from->FunctionCacheMap->begin(); - for (; cIter != from->FunctionCacheMap->end(); ++cIter) + this->FunctionCacheMap.clear(); + for (const auto& cacheMap : from->FunctionCacheMap) { vtkFindCellStrategy* strategy = nullptr; - if (cIter->second.Strategy != nullptr) + if (cacheMap.second.Strategy != nullptr) { - strategy = cIter->second.Strategy->NewInstance(); - strategy->CopyParameters(cIter->second.Strategy); - strategy->Initialize(static_cast(cIter->first)); + strategy = cacheMap.second.Strategy->NewInstance(); + strategy->CopyParameters(cacheMap.second.Strategy); + strategy->Initialize(vtkPointSet::SafeDownCast(cacheMap.first)); } - vtkDataArray* vectors = cIter->second.Vectors; - this->FunctionCacheMap->insert( - std::make_pair(cIter->first, vtkFunctionCache(strategy, vectors))); + vtkDataArray* vectors = cacheMap.second.Vectors; + this->FunctionCacheMap.insert( + std::make_pair(cacheMap.first, vtkFunctionCache(strategy, vectors))); } } //------------------------------------------------------------------------------ void vtkAbstractInterpolatedVelocityField::AddToFunctionCache( - vtkDataObject* ds, vtkFindCellStrategy* s, vtkDataArray* vectors) + vtkDataSet* ds, vtkFindCellStrategy* s, vtkDataArray* vectors) { - this->FunctionCacheMap->insert(std::make_pair(ds, vtkFunctionCache(s, vectors))); + this->FunctionCacheMap.insert(std::make_pair(ds, vtkFunctionCache(s, vectors))); } //------------------------------------------------------------------------------ size_t vtkAbstractInterpolatedVelocityField::GetFunctionCacheSize() { - return this->FunctionCacheMap->size(); + return this->FunctionCacheMap.size(); } //------------------------------------------------------------------------------ @@ -685,15 +615,21 @@ void vtkAbstractInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent inde os << indent << "Caching Status: " << (this->Caching ? "on." : "off.") << endl; os << indent << "Cache Hit: " << this->CacheHit << endl; os << indent << "Cache Miss: " << this->CacheMiss << endl; - os << indent << "Weights Size: " << this->WeightsSize << endl; - os << indent << "Last Dataset: " << this->LastDataSet << endl; os << indent << "Last Cell Id: " << this->LastCellId << endl; - os << indent << "Last Cell: " << this->Cell << endl; - os << indent << "Current Cell: " << this->GenCell << endl; + os << indent << "Last Cell: " << endl; + this->LastCell->PrintSelf(os, indent); + os << indent << "Current Cell: " << endl; + this->CurrentCell->PrintSelf(os, indent); os << indent << "Last P-Coords: " << this->LastPCoords[0] << ", " << this->LastPCoords[1] << ", " << this->LastPCoords[2] << endl; - os << indent << "Last Weights: " << this->Weights << endl; - - os << indent << "FindCell Strategy: " << this->FindCellStrategy << endl; + os << indent << "Weights Size: " << this->WeightsSize << endl; + os << indent << "Last Weights: " << endl; + for (int i = 0; i < this->WeightsSize; ++i) + { + os << indent << this->Weights[i] << ", "; + } + os << endl; + os << indent << "FindCell Strategy: " << endl; + this->FindCellStrategy->PrintSelf(os, indent); } diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h index 53fe101d2872..f213678e32da 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h @@ -80,19 +80,20 @@ #ifndef vtkAbstractInterpolatedVelocityField_h #define vtkAbstractInterpolatedVelocityField_h +#include "vtkFiltersFlowPathsModule.h" // For export macro #include "vtkFunctionSet.h" +#include "vtkNew.h" // for vtkNew + +#include // for cache class vtkCompositeDataSet; class vtkDataObject; class vtkDataSet; class vtkDataArray; +class vtkIdList; class vtkPointData; class vtkGenericCell; -class vtkAbstractInterpolatedVelocityFieldDataSetsType; class vtkFindCellStrategy; -struct vtkFunctionCacheMap; - -#include "vtkFiltersFlowPathsModule.h" // For export macro class VTKFILTERSFLOWPATHS_EXPORT vtkAbstractInterpolatedVelocityField : public vtkFunctionSet { @@ -286,8 +287,12 @@ protected: int LastSubId; vtkIdType LastCellId; vtkDataSet* LastDataSet; - vtkGenericCell* Cell; - vtkGenericCell* GenCell; // the current cell + vtkNew LastCell; + vtkNew CurrentCell; + vtkNew PointIds; + vtkNew CellList; + vtkNew BoundaryPoints; + vtkNew NeighCells; /** * Make sure the velocity field is initialized: record the @@ -295,13 +300,28 @@ protected: */ int InitializationState; + // This is used to keep track of the find cell strategy and vector array + // associated with each dataset forming the velocity field. Note that the + // find cells strategy can be null, this means the find cell is invoked + // using the dataset's FindCell() method. + struct vtkFunctionCache + { + vtkFindCellStrategy* Strategy; + vtkDataArray* Vectors; + + vtkFunctionCache(vtkFindCellStrategy* strategy, vtkDataArray* vectors) + : Strategy(strategy) + , Vectors(vectors) + { + } + }; ///@{ /** * Define a FindCell() strategy, keep track of the strategies (and other - * cahced information) associated with each dataset. + * cached information) associated with each dataset. */ vtkFindCellStrategy* FindCellStrategy; - vtkFunctionCacheMap* FunctionCacheMap; + std::map FunctionCacheMap; ///@} ///@{ @@ -336,7 +356,7 @@ protected: * Then , only if surfacic is activated finding the closest cell * using FindPoint and comparing distance with tolerance */ - virtual bool FindAndUpdateCell(vtkDataSet* ds, double* x); + virtual bool FindAndUpdateCell(vtkDataSet* ds, vtkFindCellStrategy* strategy, double* x); friend class vtkTemporalInterpolatedVelocityField; ///@{ @@ -348,7 +368,10 @@ protected: */ void FastCompute(vtkDataArray* vectors, double f[3]); bool InterpolatePoint(vtkPointData* outPD, vtkIdType outIndex); - vtkGenericCell* GetLastCell() { return (this->LastCellId != -1) ? this->GenCell : nullptr; } + vtkGenericCell* GetLastCell() + { + return (this->LastCellId != -1) ? this->CurrentCell.Get() : nullptr; + } ///@} ///@{ @@ -359,7 +382,7 @@ protected: * a dataset, find cell strtegy, and associated vectors to FunctionHashMap. */ virtual int SelfInitialize() { return 0; } - void AddToFunctionCache(vtkDataObject*, vtkFindCellStrategy*, vtkDataArray* vectors); + void AddToFunctionCache(vtkDataSet*, vtkFindCellStrategy*, vtkDataArray* vectors); size_t GetFunctionCacheSize(); ///@} diff --git a/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.cxx index 2d112e748007..88cd278b9c07 100644 --- a/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.cxx @@ -14,140 +14,21 @@ =========================================================================*/ #include "vtkCellLocatorInterpolatedVelocityField.h" -#include "vtkAbstractCellLocator.h" #include "vtkCellLocatorStrategy.h" -#include "vtkDataArray.h" -#include "vtkDataSet.h" -#include "vtkGenericCell.h" -#include "vtkMath.h" #include "vtkObjectFactory.h" -#include "vtkPointData.h" -#include "vtkSmartPointer.h" -#include "vtkStaticCellLocator.h" vtkStandardNewMacro(vtkCellLocatorInterpolatedVelocityField); -//------------------------------------------------------------------------------ -typedef std::vector> CellLocatorsTypeBase; -class vtkCellLocatorInterpolatedVelocityFieldCellLocatorsType : public CellLocatorsTypeBase -{ -}; - //------------------------------------------------------------------------------ vtkCellLocatorInterpolatedVelocityField::vtkCellLocatorInterpolatedVelocityField() { // Create the default FindCellStrategy. Note that it is deleted by the // superclass. this->FindCellStrategy = vtkCellLocatorStrategy::New(); - - // These variables are for backwards compatibility and should be deleted - // one day. - this->CellLocatorPrototype = nullptr; -} - -//------------------------------------------------------------------------------ -vtkCellLocatorInterpolatedVelocityField::~vtkCellLocatorInterpolatedVelocityField() -{ - this->SetCellLocatorPrototype(nullptr); -} - -//------------------------------------------------------------------------------ -void vtkCellLocatorInterpolatedVelocityField::SetCellLocatorPrototype( - vtkAbstractCellLocator* prototype) -{ - // Make sure the find cell strategy is appropriate for using a - // cell Locator - if (!vtkCellLocatorStrategy::SafeDownCast(this->FindCellStrategy)) - { - vtkNew strat; - this->SetFindCellStrategy(strat); - } - - vtkCellLocatorStrategy::SafeDownCast(this->FindCellStrategy)->SetCellLocator(prototype); -} - -//------------------------------------------------------------------------------ -void vtkCellLocatorInterpolatedVelocityField::AddDataSet(vtkDataSet* dataset) -{ - if (!dataset) - { - vtkErrorMacro(<< "Dataset nullptr!"); - return; - } - - // insert the dataset (do NOT register the dataset to 'this') - this->DataSets->push_back(dataset); - - int size = dataset->GetMaxCellSize(); - if (size > this->WeightsSize) - { - this->WeightsSize = size; - delete[] this->Weights; - this->Weights = new double[size]; - } -} - -//------------------------------------------------------------------------------ -void vtkCellLocatorInterpolatedVelocityField::SetLastCellId(vtkIdType c, int dataindex) -{ - this->LastCellId = c; - this->LastDataSet = (*this->DataSets)[dataindex]; - - // If the dataset changes, then the cached cell is invalidated. We might as - // well prefetch the cached cell either way. - if (this->LastCellId != -1) - { - this->LastDataSet->GetCell(this->LastCellId, this->GenCell); - } - - this->LastDataSetIndex = dataindex; } //------------------------------------------------------------------------------ -int vtkCellLocatorInterpolatedVelocityField::FunctionValues(double* x, double* f) -{ - vtkDataSet* ds = nullptr; - - if (!this->LastDataSet && !this->DataSets->empty()) - { - ds = (*this->DataSets)[0]; - this->LastDataSet = ds; - this->LastDataSetIndex = 0; - } - else - { - ds = this->LastDataSet; - } - - int retVal = this->FunctionValues(ds, x, f); - - if (!retVal) - { - for (this->LastDataSetIndex = 0; - this->LastDataSetIndex < static_cast(this->DataSets->size()); - this->LastDataSetIndex++) - { - ds = this->DataSets->operator[](this->LastDataSetIndex); - if (ds && ds != this->LastDataSet) - { - this->ClearLastCellId(); - retVal = this->FunctionValues(ds, x, f); - if (retVal) - { - this->LastDataSet = ds; - return retVal; - } - } - } - - this->LastCellId = -1; - this->LastDataSetIndex = 0; - this->LastDataSet = (*this->DataSets)[0]; - return 0; - } - - return retVal; -} +vtkCellLocatorInterpolatedVelocityField::~vtkCellLocatorInterpolatedVelocityField() = default; //------------------------------------------------------------------------------ void vtkCellLocatorInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent indent) diff --git a/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.h index 902d31705938..5cebadf795c5 100644 --- a/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.h @@ -55,7 +55,6 @@ #include "vtkFiltersFlowPathsModule.h" // For export macro class vtkAbstractCellLocator; -class vtkCellLocatorInterpolatedVelocityFieldCellLocatorsType; class VTKFILTERSFLOWPATHS_EXPORT vtkCellLocatorInterpolatedVelocityField : public vtkCompositeInterpolatedVelocityField @@ -70,60 +69,11 @@ public: */ static vtkCellLocatorInterpolatedVelocityField* New(); - /** - * Add a dataset coupled with a cell locator (of type vtkAbstractCellLocator) - * for vector function evaluation. Note the use of a vtkAbstractCellLocator - * enables robust cell location. If more than one dataset is added, the - * evaluation point is searched in all until a match is found. THIS FUNCTION - * DOES NOT CHANGE THE REFERENCE COUNT OF dataset FOR THREAD SAFETY REASONS. - */ - void AddDataSet(vtkDataSet* dataset) override; - - using Superclass::FunctionValues; - /** - * Evaluate the velocity field f at point (x, y, z). - */ - int FunctionValues(double* x, double* f) override; - - /** - * Set the cell id cached by the last evaluation within a specified dataset. - */ - void SetLastCellId(vtkIdType c, int dataindex) override; - - /** - * Set the cell id cached by the last evaluation. - */ - void SetLastCellId(vtkIdType c) override { this->Superclass::SetLastCellId(c); } - - ///@{ - /** - * Set/Get the prototype of the cell locator that is used for interpolating - * the velocity field during integration. The prototype is used to - * instantiate locators for performing interpolation. By default, a - * vtkModifiedBSPTree is used - other classes such as vtkStaticCellLocator - * can be faster. - */ - void SetCellLocatorPrototype(vtkAbstractCellLocator* prototype); - vtkGetObjectMacro(CellLocatorPrototype, vtkAbstractCellLocator); - ///@} - protected: vtkCellLocatorInterpolatedVelocityField(); ~vtkCellLocatorInterpolatedVelocityField() override; - /** - * Evaluate the velocity field f at point (x, y, z) in a specified dataset - * (of type vtkImageData or vtkRectilinearGrid only) by invoking FindCell() - * to locate the next cell if the given point is outside the current cell. - */ - int FunctionValues(vtkDataSet* ds, double* x, double* f) override - { - return this->Superclass::FunctionValues(ds, x, f); - } - private: - vtkAbstractCellLocator* CellLocatorPrototype; - vtkCellLocatorInterpolatedVelocityField(const vtkCellLocatorInterpolatedVelocityField&) = delete; void operator=(const vtkCellLocatorInterpolatedVelocityField&) = delete; }; diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx index cf8f0e6139dd..3ba85e7549d5 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx @@ -57,6 +57,109 @@ void vtkCompositeInterpolatedVelocityField::CopyParameters( this->Weights = new double[obj->WeightsSize]; } +//------------------------------------------------------------------------------ +void vtkCompositeInterpolatedVelocityField::AddDataSet(vtkDataSet* dataset) +{ + if (!dataset) + { + vtkErrorMacro(<< "Dataset nullptr!"); + return; + } + + // insert the dataset (do NOT register the dataset to 'this') + this->DataSets->push_back(dataset); + + int size = dataset->GetMaxCellSize(); + if (size > this->WeightsSize) + { + this->WeightsSize = size; + delete[] this->Weights; + this->Weights = new double[size]; + } +} + +//------------------------------------------------------------------------------ +void vtkCompositeInterpolatedVelocityField::SetLastCellId(vtkIdType c, int dataindex) +{ + this->LastCellId = c; + this->LastDataSet = (*this->DataSets)[dataindex]; + + // If the dataset changes, then the cached cell is invalidated. We might as + // well prefetch the cached cell either way. + if (this->LastCellId != -1) + { + this->LastDataSet->GetCell(this->LastCellId, this->CurrentCell); + } + + this->LastDataSetIndex = dataindex; +} + +//------------------------------------------------------------------------------ +int vtkCompositeInterpolatedVelocityField::FunctionValues(double* x, double* f) +{ + vtkDataSet* ds; + if (!this->LastDataSet && !this->DataSets->empty()) + { + ds = (*this->DataSets)[0]; + this->LastDataSet = ds; + this->LastDataSetIndex = 0; + } + else + { + ds = this->LastDataSet; + } + + // Use the superclass's method first as it is faster. + int retVal = this->FunctionValues(ds, x, f); + + if (!retVal) + { + // Okay need to check other datasets since we are outside of the current dataset. + for (this->LastDataSetIndex = 0; + this->LastDataSetIndex < static_cast(this->DataSets->size()); + this->LastDataSetIndex++) + { + ds = this->DataSets->operator[](this->LastDataSetIndex); + if (ds && ds->GetNumberOfPoints() > 0 && ds != this->LastDataSet) + { + this->ClearLastCellId(); + retVal = this->FunctionValues(ds, x, f); + if (retVal) + { + this->LastDataSet = ds; + return retVal; + } + } + } + this->LastCellId = -1; + this->LastDataSetIndex = 0; + this->LastDataSet = (*this->DataSets)[0]; + return 0; + } + + return retVal; +} + +//------------------------------------------------------------------------------ +int vtkCompositeInterpolatedVelocityField::SnapPointOnCell(double* pOrigin, double* pSnap) +{ + if (this->LastDataSet == nullptr) + { + return 0; + } + auto datasetFunctionCacheIter = this->FunctionCacheMap.find(this->LastDataSet); + // Find the closest cell + if (!this->FindAndUpdateCell( + this->LastDataSet, datasetFunctionCacheIter->second.Strategy, pOrigin)) + { + return 0; + } + double dist2; + this->CurrentCell->EvaluatePosition( + pOrigin, pSnap, this->LastSubId, this->LastPCoords, dist2, this->Weights); + return 1; +} + //------------------------------------------------------------------------------ void vtkCompositeInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent indent) { diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h index 66d9ef50fd2a..fd6654f85739 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h @@ -58,7 +58,28 @@ public: * match is found. THIS FUNCTION DOES NOT CHANGE THE REFERENCE COUNT OF * dataset FOR THREAD SAFETY REASONS. */ - virtual void AddDataSet(vtkDataSet* dataset) = 0; + virtual void AddDataSet(vtkDataSet* dataset); + + using Superclass::FunctionValues; + /** + * Evaluate the velocity field f at point (x, y, z). + */ + int FunctionValues(double* x, double* f) override; + + /** + * Project the provided point on current cell, current dataset. + */ + virtual int SnapPointOnCell(double* pOrigin, double* pProj); + + /** + * Set the cell id cached by the last evaluation within a specified dataset. + */ + void SetLastCellId(vtkIdType c, int dataindex) override; + + /** + * Set the cell id cached by the last evaluation. + */ + void SetLastCellId(vtkIdType c) override { this->Superclass::SetLastCellId(c); } ///@{ /** @@ -81,6 +102,18 @@ protected: vtkCompositeInterpolatedVelocityField(); ~vtkCompositeInterpolatedVelocityField() override; + /** + * Evaluate the velocity field f at point (x, y, z) in a specified dataset + * by either involving vtkPointLocator, via vtkPointSet::FindCell(), in + * locating the next cell (for datasets of type vtkPointSet) or simply + * invoking vtkImageData::FindCell() or vtkRectilinearGrid::FindCell() to + * fulfill the same task if the point is outside the current cell. + */ + int FunctionValues(vtkDataSet* ds, double* x, double* f) override + { + return this->Superclass::FunctionValues(ds, x, f); + } + int LastDataSetIndex; vtkCompositeInterpolatedVelocityFieldDataSetsType* DataSets; diff --git a/Filters/FlowPaths/vtkInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkInterpolatedVelocityField.cxx index c6bf65ee2c94..45d1f2df026b 100644 --- a/Filters/FlowPaths/vtkInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkInterpolatedVelocityField.cxx @@ -13,10 +13,7 @@ =========================================================================*/ #include "vtkInterpolatedVelocityField.h" - #include "vtkClosestPointStrategy.h" -#include "vtkDataSet.h" -#include "vtkGenericCell.h" #include "vtkObjectFactory.h" //------------------------------------------------------------------------------ @@ -30,105 +27,6 @@ vtkInterpolatedVelocityField::vtkInterpolatedVelocityField() this->FindCellStrategy = vtkClosestPointStrategy::New(); } -//------------------------------------------------------------------------------ -void vtkInterpolatedVelocityField::AddDataSet(vtkDataSet* dataset) -{ - if (!dataset) - { - return; - } - - // insert the dataset (do NOT register the dataset to 'this') - this->DataSets->push_back(dataset); - - int size = dataset->GetMaxCellSize(); - if (size > this->WeightsSize) - { - this->WeightsSize = size; - delete[] this->Weights; - this->Weights = new double[size]; - } -} - -//------------------------------------------------------------------------------ -void vtkInterpolatedVelocityField::SetLastCellId(vtkIdType c, int dataindex) -{ - this->LastCellId = c; - this->LastDataSet = (*this->DataSets)[dataindex]; - - // if the dataset changes, then the cached cell is invalidated - // we might as well prefetch the cached cell either way. - if (this->LastCellId != -1) - { - this->LastDataSet->GetCell(this->LastCellId, this->GenCell); - } - - this->LastDataSetIndex = dataindex; -} - -//------------------------------------------------------------------------------ -int vtkInterpolatedVelocityField::FunctionValues(double* x, double* f) -{ - vtkDataSet* ds; - if (!this->LastDataSet && !this->DataSets->empty()) - { - ds = (*this->DataSets)[0]; - this->LastDataSet = ds; - this->LastDataSetIndex = 0; - } - else - { - ds = this->LastDataSet; - } - - // Use the superclass's method first as it is faster. - int retVal = this->FunctionValues(ds, x, f); - - if (!retVal) - { - // Okay need to check other datasets since we are outside of the current dataset. - for (this->LastDataSetIndex = 0; - this->LastDataSetIndex < static_cast(this->DataSets->size()); - this->LastDataSetIndex++) - { - ds = this->DataSets->operator[](this->LastDataSetIndex); - if (ds && ds->GetNumberOfPoints() > 0 && ds != this->LastDataSet) - { - this->ClearLastCellId(); - retVal = this->FunctionValues(ds, x, f); - if (retVal) - { - this->LastDataSet = ds; - return retVal; - } - } - } - this->LastCellId = -1; - this->LastDataSetIndex = 0; - this->LastDataSet = (*this->DataSets)[0]; - return 0; - } - - return retVal; -} - -//------------------------------------------------------------------------------ -int vtkInterpolatedVelocityField::SnapPointOnCell(double* pOrigin, double* pSnap) -{ - if (this->LastDataSet == nullptr) - { - return 0; - } - if (!this->FindAndUpdateCell(this->LastDataSet, pOrigin)) - { - return 0; - } - double dist2; - this->GenCell->EvaluatePosition( - pOrigin, pSnap, this->LastSubId, this->LastPCoords, dist2, this->Weights); - return 1; -} - //------------------------------------------------------------------------------ void vtkInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent indent) { diff --git a/Filters/FlowPaths/vtkInterpolatedVelocityField.h b/Filters/FlowPaths/vtkInterpolatedVelocityField.h index 6c4a246eef38..77e78f1ebde6 100644 --- a/Filters/FlowPaths/vtkInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkInterpolatedVelocityField.h @@ -79,52 +79,10 @@ public: void PrintSelf(ostream& os, vtkIndent indent) override; ///@} - /** - * Add a dataset used for the implicit veclotiy function evaluation. If - * more than one dataset has been added (via methods in this class's - * superclass vtkCompositeInterpolatedVelocityField), the evaluation point - * is searched in all until a match is found. THIS FUNCTION DOES NOT CHANGE - * THE REFERENCE COUNT OF DATASET FOR THREAD SAFETY REASONS. - */ - void AddDataSet(vtkDataSet* dataset) override; - - using Superclass::FunctionValues; - /** - * Evaluate the velocity field f at point (x, y, z). - */ - int FunctionValues(double* x, double* f) override; - - /** - * Project the provided point on current cell, current dataset. - */ - virtual int SnapPointOnCell(double* pOrigin, double* pProj); - - /** - * Set the cell id cached by the last evaluation within a specified dataset. - */ - void SetLastCellId(vtkIdType c, int dataindex) override; - - /** - * Set the cell id cached by the last evaluation. - */ - void SetLastCellId(vtkIdType c) override { this->Superclass::SetLastCellId(c); } - protected: vtkInterpolatedVelocityField(); ~vtkInterpolatedVelocityField() override = default; - /** - * Evaluate the velocity field f at point (x, y, z) in a specified dataset - * by either involving vtkPointLocator, via vtkPointSet::FindCell(), in - * locating the next cell (for datasets of type vtkPointSet) or simply - * invoking vtkImageData::FindCell() or vtkRectilinearGrid::FindCell() to - * fulfill the same task if the point is outside the current cell. - */ - int FunctionValues(vtkDataSet* ds, double* x, double* f) override - { - return this->Superclass::FunctionValues(ds, x, f); - } - private: vtkInterpolatedVelocityField(const vtkInterpolatedVelocityField&) = delete; void operator=(const vtkInterpolatedVelocityField&) = delete; diff --git a/Filters/FlowPaths/vtkStreamTracer.cxx b/Filters/FlowPaths/vtkStreamTracer.cxx index 6ae06763822a..131c03f4b0f4 100644 --- a/Filters/FlowPaths/vtkStreamTracer.cxx +++ b/Filters/FlowPaths/vtkStreamTracer.cxx @@ -23,7 +23,6 @@ PURPOSE. See the above copyright notice for more information. #include "vtkCompositeDataPipeline.h" #include "vtkCompositeDataSet.h" #include "vtkDataSetAttributes.h" -#include "vtkDataSetAttributesFieldList.h" #include "vtkDoubleArray.h" #include "vtkExecutive.h" #include "vtkGenericCell.h" @@ -44,7 +43,6 @@ PURPOSE. See the above copyright notice for more information. #include "vtkRungeKutta2.h" #include "vtkRungeKutta4.h" #include "vtkRungeKutta45.h" -#include "vtkSMPThreadLocalObject.h" #include "vtkSMPTools.h" #include "vtkSmartPointer.h" #include "vtkStaticCellLocator.h" @@ -173,20 +171,12 @@ void vtkStreamTracer::SetInterpolatorType(int interpType) { // create an interpolator equipped with a cell locator vtkNew cellLoc; - - // specify the type of the cell locator attached to the interpolator - constexpr double tolerance = 1e-6; - vtkNew cellLocType; - cellLocType->SetTolerance(tolerance); - cellLocType->UseDiagonalLengthToleranceOn(); - this->SetInterpolatorPrototype(cellLoc); } else { // create an interpolator equipped with a point locator (by default) - vtkSmartPointer pntLoc = - vtkSmartPointer::New(); + vtkNew pntLoc; this->SetInterpolatorPrototype(pntLoc); } } @@ -998,10 +988,10 @@ struct TracerIntegrator integrator->SetFunctionSet(func); // Check Surface option - vtkInterpolatedVelocityField* surfaceFunc = nullptr; + vtkCompositeInterpolatedVelocityField* surfaceFunc = nullptr; if (this->SurfaceStreamlines) { - surfaceFunc = vtkInterpolatedVelocityField::SafeDownCast(func); + surfaceFunc = vtkCompositeInterpolatedVelocityField::SafeDownCast(func); if (surfaceFunc) { surfaceFunc->SetForceSurfaceTangentVector(true); @@ -1387,7 +1377,6 @@ struct TracerIntegrator vtkIdType* CAOffsets; vtkIdType* CAConn; vtkPointData* OutPD; - vtkIdList* InputSeedIds; vtkIdList* SeedIds; int* OutSeedIds; int* OutRetVals; -- GitLab From 6202e64170d356e3700ebb2bb782647178b175b4 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 20 Apr 2022 16:29:43 -0400 Subject: [PATCH 0045/1015] vtkFindCellStrategy: Implement FindClosestPointWithinRadius approach --- Common/DataModel/vtkCellLocatorStrategy.cxx | 9 ++ Common/DataModel/vtkCellLocatorStrategy.h | 6 ++ Common/DataModel/vtkClosestPointStrategy.cxx | 93 ++++++++++++++++++++ Common/DataModel/vtkClosestPointStrategy.h | 8 ++ Common/DataModel/vtkFindCellStrategy.h | 19 ++++ 5 files changed, 135 insertions(+) diff --git a/Common/DataModel/vtkCellLocatorStrategy.cxx b/Common/DataModel/vtkCellLocatorStrategy.cxx index 16eb36ab2129..2b9a3a3f6c31 100644 --- a/Common/DataModel/vtkCellLocatorStrategy.cxx +++ b/Common/DataModel/vtkCellLocatorStrategy.cxx @@ -132,6 +132,15 @@ vtkIdType vtkCellLocatorStrategy::FindCell(double x[3], vtkCell* cell, vtkGeneri return this->CellLocator->FindCell(x, tol2, gencell, subId, pcoords, weights); } +//------------------------------------------------------------------------------ +vtkIdType vtkCellLocatorStrategy::FindClosestPointWithinRadius(double x[3], double radius, + double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, + int& inside) +{ + return this->CellLocator->FindClosestPointWithinRadius( + x, radius, closestPoint, cell, cellId, subId, dist2, inside); +} + //------------------------------------------------------------------------------ void vtkCellLocatorStrategy::PrintSelf(ostream& os, vtkIndent indent) { diff --git a/Common/DataModel/vtkCellLocatorStrategy.h b/Common/DataModel/vtkCellLocatorStrategy.h index 6ec51f3d196a..b6b677202e9d 100644 --- a/Common/DataModel/vtkCellLocatorStrategy.h +++ b/Common/DataModel/vtkCellLocatorStrategy.h @@ -61,6 +61,12 @@ public: vtkIdType FindCell(double x[3], vtkCell* cell, vtkGenericCell* gencell, vtkIdType cellId, double tol2, int& subId, double pcoords[3], double* weights) override; + /** + * Implement the specific strategy. + */ + vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], + vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; + ///@{ /** * Set / get an instance of vtkAbstractCellLocator which is used to diff --git a/Common/DataModel/vtkClosestPointStrategy.cxx b/Common/DataModel/vtkClosestPointStrategy.cxx index 555c51025fd1..7732093f204e 100644 --- a/Common/DataModel/vtkClosestPointStrategy.cxx +++ b/Common/DataModel/vtkClosestPointStrategy.cxx @@ -115,6 +115,7 @@ int vtkClosestPointStrategy::Initialize(vtkPointSet* ps) this->PointLocator = psPL; this->OwnsLocator = false; } + this->Weights.resize(8); this->InitializeTime.Modified(); @@ -269,6 +270,98 @@ vtkIdType vtkClosestPointStrategy::FindCell(double x[3], vtkCell* cell, vtkGener return -1; } +//------------------------------------------------------------------------------ +vtkIdType vtkClosestPointStrategy::FindClosestPointWithinRadius(double x[3], double radius, + double closestPoint[3], vtkGenericCell* genCell, vtkIdType& closestCellId, int& closestSubId, + double& minDist2, int& inside) +{ + // the implementation of this function is a copy of an old approach in + // vtkAbstractInterpolatedVelocityField, check git history for more info + // in the future something better could be implemented + vtkIdType retVal = 0; + + // find the point closest to the coordinates + // given and search the attached cells. + vtkIdType ptId = this->PointLocator->FindClosestPoint(x); + if (ptId < 0) + { + return retVal; + } + // find the cells adjacent to the closest point + this->PointSet->GetPointCells(ptId, this->CellIds); + double point[3], pcoords[3], dist2, closestPcoords[3]; + int subId, stat; + vtkIdType cellId; + closestSubId = -1; + closestCellId = -1; + minDist2 = this->PointSet->GetLength2(); + // find the closest adjacent cell + for (vtkIdType id = 0, max = this->CellIds->GetNumberOfIds(); id < max; ++id) + { + cellId = this->CellIds->GetId(id); + this->PointSet->GetCell(cellId, genCell); + if (this->Weights.size() < static_cast(genCell->GetNumberOfPoints())) + { + this->Weights.resize(static_cast(genCell->GetNumberOfPoints())); + } + stat = genCell->EvaluatePosition(x, point, subId, pcoords, dist2, this->Weights.data()); + if (stat != -1 && dist2 < minDist2) + { + retVal = 1; + inside = stat; + minDist2 = dist2; + closestCellId = cellId; + closestSubId = subId; + closestPoint[0] = point[0]; + closestPoint[1] = point[1]; + closestPoint[2] = point[2]; + closestPcoords[0] = pcoords[0]; + closestPcoords[1] = pcoords[1]; + closestPcoords[2] = pcoords[2]; + } + } + if (closestCellId == -1) + { + return retVal; + } + // Recover the closest cell + this->PointSet->GetCell(closestCellId, genCell); + // get the boundary point ids closest to the parametric coordinates + genCell->CellBoundary(closestSubId, closestPcoords, this->PointIds); + // get the neighbors cells of the boundary points + this->PointSet->GetCellNeighbors(closestCellId, this->PointIds, this->Neighbors); + // check if any of the neighbors is closer to the query point + for (vtkIdType neighCellId = 0, max = this->Neighbors->GetNumberOfIds(); neighCellId < max; + ++neighCellId) + { + cellId = this->Neighbors->GetId(neighCellId); + this->PointSet->GetCell(cellId, genCell); + if (this->Weights.size() < static_cast(genCell->GetNumberOfPoints())) + { + this->Weights.resize(static_cast(genCell->GetNumberOfPoints())); + } + stat = genCell->EvaluatePosition(x, point, subId, pcoords, dist2, this->Weights.data()); + if (stat != -1 && dist2 < minDist2) + { + retVal = 1; + inside = stat; + minDist2 = dist2; + closestCellId = cellId; + closestSubId = subId; + closestPoint[0] = point[0]; + closestPoint[1] = point[1]; + closestPoint[2] = point[2]; + // pcoords are not used again + } + } + // the closest is within the given radius + if (minDist2 > radius * radius) + { + retVal = 0; + } + return retVal; +} + //------------------------------------------------------------------------------ void vtkClosestPointStrategy::CopyParameters(vtkFindCellStrategy* from) { diff --git a/Common/DataModel/vtkClosestPointStrategy.h b/Common/DataModel/vtkClosestPointStrategy.h index 463e61efaf9d..a374eccf3378 100644 --- a/Common/DataModel/vtkClosestPointStrategy.h +++ b/Common/DataModel/vtkClosestPointStrategy.h @@ -74,6 +74,13 @@ public: vtkIdType FindCell(double x[3], vtkCell* cell, vtkGenericCell* gencell, vtkIdType cellId, double tol2, int& subId, double pcoords[3], double* weights) override; + /** + * Implement the specific strategy. This method should only be called + * after the Initialize() method has been invoked. + */ + vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], + vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; + ///@{ /** * Set / get an instance of vtkAbstractPointLocator which is used to @@ -107,6 +114,7 @@ protected: vtkNew Neighbors; vtkNew CellIds; vtkNew NearPointIds; + std::vector Weights; vtkAbstractPointLocator* PointLocator; bool OwnsLocator; // was the locator specified? or taken from associated point set diff --git a/Common/DataModel/vtkFindCellStrategy.h b/Common/DataModel/vtkFindCellStrategy.h index e29c49921385..4d7bc191a3c1 100644 --- a/Common/DataModel/vtkFindCellStrategy.h +++ b/Common/DataModel/vtkFindCellStrategy.h @@ -86,6 +86,25 @@ public: virtual vtkIdType FindCell(double x[3], vtkCell* cell, vtkGenericCell* gencell, vtkIdType cellId, double tol2, int& subId, double pcoords[3], double* weights) = 0; + /** + * Return the closest point within a specified radius and the cell which is + * closest to the point x. The closest point is somewhere on a cell, it + * need not be one of the vertices of the cell. This method returns 1 if a + * point is found within the specified radius. If there are no cells within + * the specified radius, the method returns 0 and the values of + * closestPoint, cellId, subId, and dist2 are undefined. This version takes + * in a vtkGenericCell to avoid allocating and deallocating the cell. This + * is much faster than the version which does not take a *cell, especially + * when this function is called many times in a row such as by a for loop, + * where the allocation and dealloction can be done only once outside the + * for loop. If a closest point is found, "cell" contains the points and + * ptIds for the cell "cellId" upon exit. If a closest point is found, + * inside returns the return value of the EvaluatePosition call to the + * closest cell; inside(=1) or outside(=0). + */ + virtual vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], + vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) = 0; + /** * Copy essential parameters between instances of this class. This * generally is used to copy from instance prototype to another, or to copy -- GitLab From a9e2818bc27c8a09bee57255999359a974c01d74 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Fri, 22 Apr 2022 00:10:57 -0400 Subject: [PATCH 0046/1015] vtkClosestPointStrategy: Improve FindCell We can use a std::vector which can be allocated once and reset it every time we want to use it instead of the expensive std::set. std::vector is better because operator[] cost is cheaper. With this change at a specific streamlines experiment FindCell Before changes took 35.856 sec, After changes took 28.862 sec. The speedup is 35.856 sec / 27.862 sec = 1.287 times better. --- .../DataModel/vtkClosestNPointsStrategy.cxx | 5 +-- Common/DataModel/vtkClosestPointStrategy.cxx | 35 +++++++++++-------- Common/DataModel/vtkClosestPointStrategy.h | 5 +-- 3 files changed, 26 insertions(+), 19 deletions(-) diff --git a/Common/DataModel/vtkClosestNPointsStrategy.cxx b/Common/DataModel/vtkClosestNPointsStrategy.cxx index decfea0ae824..aecccf992b8c 100644 --- a/Common/DataModel/vtkClosestNPointsStrategy.cxx +++ b/Common/DataModel/vtkClosestNPointsStrategy.cxx @@ -70,7 +70,7 @@ vtkIdType vtkClosestNPointsStrategy::FindCell(double x[3], vtkCell* cell, vtkGen for (j = 0; j < numCells; j++) { cellId = this->CellIds->GetId(j); - if (this->VisitedCells.find(cellId) == this->VisitedCells.end()) + if (!this->VisitedCells[cellId]) { cell = this->SelectCell(this->PointSet, cellId, nullptr, gencell); ret = cell->EvaluatePosition(x, closest, subId, pcoords, dist2, weights); @@ -78,7 +78,8 @@ vtkIdType vtkClosestNPointsStrategy::FindCell(double x[3], vtkCell* cell, vtkGen { return cellId; } - this->VisitedCells.insert(cellId); + this->VisitedCells[cellId] = true; + this->VisitedCellIds->InsertNextId(cellId); } } } diff --git a/Common/DataModel/vtkClosestPointStrategy.cxx b/Common/DataModel/vtkClosestPointStrategy.cxx index 7732093f204e..7352707a4dfb 100644 --- a/Common/DataModel/vtkClosestPointStrategy.cxx +++ b/Common/DataModel/vtkClosestPointStrategy.cxx @@ -15,14 +15,11 @@ #include "vtkClosestPointStrategy.h" #include "vtkAbstractPointLocator.h" -#include "vtkCell.h" #include "vtkGenericCell.h" #include "vtkIdList.h" #include "vtkObjectFactory.h" #include "vtkPointSet.h" -#include - //------------------------------------------------------------------------------ vtkStandardNewMacro(vtkClosestPointStrategy); @@ -115,6 +112,7 @@ int vtkClosestPointStrategy::Initialize(vtkPointSet* ps) this->PointLocator = psPL; this->OwnsLocator = false; } + this->VisitedCells.resize(static_cast(ps->GetNumberOfCells())); this->Weights.resize(8); this->InitializeTime.Modified(); @@ -136,24 +134,26 @@ namespace // reallocated. vtkIdType FindCellWalk(vtkClosestPointStrategy* self, vtkPointSet* ps, double x[3], vtkCell* cell, vtkGenericCell* gencell, vtkIdType cellId, double tol2, int& subId, double pcoords[3], - double* weights, std::set& visitedCells, vtkIdList* ptIds, vtkIdList* neighbors) + double* weights, std::vector& visitedCells, vtkIdList* visitedCellIds, + vtkIdList* ptIds, vtkIdList* neighbors) { const int VTK_MAX_WALK = 12; + double closestPoint[3]; + double dist2; for (int walk = 0; walk < VTK_MAX_WALK; walk++) { // Check to see if we already visited this cell. - if (visitedCells.find(cellId) != visitedCells.end()) + if (visitedCells[cellId]) { break; } - visitedCells.insert(cellId); + visitedCells[cellId] = true; + visitedCellIds->InsertNextId(cellId); // Get information for the cell. cell = self->SelectCell(ps, cellId, cell, gencell); // Check to see if the current, cached cell contains the point. - double closestPoint[3]; - double dist2; if ((cell->EvaluatePosition(x, closestPoint, subId, pcoords, dist2, weights) == 1) && (dist2 <= tol2)) { @@ -180,14 +180,15 @@ vtkIdType FindCellWalk(vtkClosestPointStrategy* self, vtkPointSet* ps, double x[ //------------------------------------------------------------------------------ vtkIdType FindCellWalk(vtkClosestPointStrategy* self, vtkPointSet* ps, double x[3], vtkGenericCell* gencell, vtkIdList* cellIds, double tol2, int& subId, double pcoords[3], - double* weights, std::set& visitedCells, vtkIdList* ptIds, vtkIdList* neighbors) + double* weights, std::vector& visitedCells, vtkIdList* visitedCellIds, + vtkIdList* ptIds, vtkIdList* neighbors) { vtkIdType numCellIds = cellIds->GetNumberOfIds(); for (vtkIdType i = 0; i < numCellIds; i++) { vtkIdType cellId = cellIds->GetId(i); vtkIdType foundCell = FindCellWalk(self, ps, x, nullptr, gencell, cellId, tol2, subId, pcoords, - weights, visitedCells, ptIds, neighbors); + weights, visitedCells, visitedCellIds, ptIds, neighbors); if (foundCell >= 0) { return foundCell; @@ -212,15 +213,19 @@ vtkIdType vtkClosestPointStrategy::FindCell(double x[3], vtkCell* cell, vtkGener return -1; } - // Implement the strategy proper - this->VisitedCells.clear(); + // reset the visited cells + for (vtkIdType i = 0, max = this->VisitedCellIds->GetNumberOfIds(); i < max; ++i) + { + this->VisitedCells[this->VisitedCellIds->GetId(i)] = false; + } + this->VisitedCellIds->Reset(); // If we are given a starting cell, try that. vtkIdType foundCell; if (cell && (cellId >= 0)) { foundCell = FindCellWalk(this, this->PointSet, x, cell, gencell, cellId, tol2, subId, pcoords, - weights, this->VisitedCells, this->PointIds, this->Neighbors); + weights, this->VisitedCells, this->VisitedCellIds, this->PointIds, this->Neighbors); if (foundCell >= 0) { return foundCell; @@ -236,7 +241,7 @@ vtkIdType vtkClosestPointStrategy::FindCell(double x[3], vtkCell* cell, vtkGener } this->PointSet->GetPointCells(ptId, this->CellIds); foundCell = FindCellWalk(this, this->PointSet, x, gencell, this->CellIds, tol2, subId, pcoords, - weights, this->VisitedCells, this->PointIds, this->Neighbors); + weights, this->VisitedCells, this->VisitedCellIds, this->PointIds, this->Neighbors); if (foundCell >= 0) { return foundCell; @@ -256,7 +261,7 @@ vtkIdType vtkClosestPointStrategy::FindCell(double x[3], vtkCell* cell, vtkGener { this->PointSet->GetPointCells(this->NearPointIds->GetId(i), this->CellIds); foundCell = FindCellWalk(this, this->PointSet, x, gencell, this->CellIds, tol2, subId, pcoords, - weights, this->VisitedCells, this->PointIds, this->Neighbors); + weights, this->VisitedCells, this->VisitedCellIds, this->PointIds, this->Neighbors); if (foundCell >= 0) { return foundCell; diff --git a/Common/DataModel/vtkClosestPointStrategy.h b/Common/DataModel/vtkClosestPointStrategy.h index a374eccf3378..8aa26b2338e4 100644 --- a/Common/DataModel/vtkClosestPointStrategy.h +++ b/Common/DataModel/vtkClosestPointStrategy.h @@ -38,7 +38,7 @@ #include "vtkGenericCell.h" //inline SelectCell #include "vtkPointSet.h" //inline SelectCell -#include // For tracking visited cells +#include // For tracking visited cells class vtkIdList; class vtkAbstractPointLocator; @@ -109,7 +109,8 @@ protected: vtkClosestPointStrategy(); ~vtkClosestPointStrategy() override; - std::set VisitedCells; + std::vector VisitedCells; // boolean array to track visited cells + vtkNew VisitedCellIds; // list of visited cell ids to reset boolean array vtkNew PointIds; vtkNew Neighbors; vtkNew CellIds; -- GitLab From b5b05abd439f14f1b6704e9198107a73ebf46f20 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 21 Apr 2022 13:04:52 -0400 Subject: [PATCH 0047/1015] vtkUnstructuredGrid: Improve GetCellNeighbors/IsCellBoundary The idea behind for GetCellNeighbors' improvement is the fact that the operation could be done in-place instead of allocating, de-allocating an extra std::vector With this change at a specific streamlines experiment GetCellNeighbors Before changes took 10.958 sec, After changes took 5.542 sec. The speedup is 10.958 sec / 5.542 sec = 1.982 times better. GetCellNeighbors is used in many classes: 1) vtkClosestPointStrategy 2) vtkDataSetRegionSurfaceFilter 3) vtkDataSetSurfaceFilter 4) vtkGeometryFilter 5) vtkFillHolesFilter 6) vtkMarkBoundaryFilter 7) vtkPUnstructuredGridGHostCellsGenerator, 8) vtkUnstructuredGridVolumeZSweepMapper, IsCellBoundary now also has a version that accepts an vtkIdList to avoid that expensive memory allocation/de-allocation. IsCellBoundary is used in 2 classes: 1) vtkMarkBoundaryFilter 2) vtkGeometryFilter All of these classes have greatly benefited from this change. --- Common/DataModel/vtkUnstructuredGrid.cxx | 99 +++++++++++++++------- Common/DataModel/vtkUnstructuredGrid.h | 8 +- Filters/Geometry/vtkGeometryFilter.cxx | 21 ++--- Filters/Geometry/vtkMarkBoundaryFilter.cxx | 35 ++++---- 4 files changed, 101 insertions(+), 62 deletions(-) diff --git a/Common/DataModel/vtkUnstructuredGrid.cxx b/Common/DataModel/vtkUnstructuredGrid.cxx index 60f1bfbbc16a..850acfa02a35 100644 --- a/Common/DataModel/vtkUnstructuredGrid.cxx +++ b/Common/DataModel/vtkUnstructuredGrid.cxx @@ -2002,34 +2002,41 @@ namespace // by only one cell), or whether the points define an interior entity (used // by more than one cell). template -inline bool IsCellBoundaryImp(TLinks* links, vtkIdType cellId, vtkIdType npts, const vtkIdType* pts) +inline bool IsCellBoundaryImp( + TLinks* links, vtkIdType cellId, vtkIdType npts, const vtkIdType* pts, vtkIdList* cellIdsList) { - std::vector cellSet; - cellSet.reserve(256); // avoid reallocs if possible - + vtkIdType numberOfCells; + const vtkIdType* cells; // Combine all of the cell lists, and then sort them. - for (auto i = 0; i < npts; ++i) + for (vtkIdType i = 0; i < npts; ++i) { - vtkIdType numCells = links->GetNcells(pts[i]); - const vtkIdType* cells = links->GetCells(pts[i]); - cellSet.insert(cellSet.end(), cells, cells + numCells); + numberOfCells = links->GetNcells(pts[i]); + cells = links->GetCells(pts[i]); + for (vtkIdType j = 0; j < numberOfCells; ++j) + { + cellIdsList->InsertNextId(cells[j]); + } } - std::sort(cellSet.begin(), cellSet.end()); + vtkIdType numberOfIds = cellIdsList->GetNumberOfIds(); + vtkIdType* cellIds = cellIdsList->GetPointer(0); + vtkIdType* endCellIds = cellIds + numberOfIds; + std::sort(cellIds, endCellIds); // Sorting will have grouped the cells into contiguous runs. Determine the // length of the runs - if equal to npts, then a cell is present in all // sets, and if this cell is not the user-provided cellId, then there is a // cell common to all sets, hence this is not a boundary cell. - auto itr = cellSet.begin(); - while (itr != cellSet.end()) + vtkIdType *itr = cellIds, *start; + vtkIdType currentCell; + while (itr != endCellIds) { - auto start = itr; - vtkIdType currentCell = *itr; - while (itr != cellSet.end() && *itr == currentCell) + start = itr; + currentCell = *itr; + while (itr != endCellIds && *itr == currentCell) ++itr; // advance across this contiguous run // What is the size of the contiguous run? If equal to - // the number of sets, then this is an interior boundary. + // the number of sets, then this is a neighboring cell. if (((itr - start) >= npts) && (currentCell != cellId)) { return false; @@ -2043,39 +2050,55 @@ inline bool IsCellBoundaryImp(TLinks* links, vtkIdType cellId, vtkIdType npts, c // use all the points in the points list (pts). template inline void GetCellNeighborsImp( - TLinks* links, vtkIdType cellId, vtkIdType npts, const vtkIdType* pts, vtkIdList* cellIds) + TLinks* links, vtkIdType cellId, vtkIdType npts, const vtkIdType* pts, vtkIdList* cellIdsList) { - std::vector cellSet; - cellSet.reserve(256); // avoid reallocs if possible - + vtkIdType numberOfCells; + const vtkIdType* cells; // Combine all of the cell lists, and then sort them. - for (auto i = 0; i < npts; ++i) + for (vtkIdType i = 0; i < npts; ++i) { - vtkIdType numCells = links->GetNcells(pts[i]); - const vtkIdType* cells = links->GetCells(pts[i]); - cellSet.insert(cellSet.end(), cells, cells + numCells); + numberOfCells = links->GetNcells(pts[i]); + cells = links->GetCells(pts[i]); + for (vtkIdType j = 0; j < numberOfCells; ++j) + { + cellIdsList->InsertNextId(cells[j]); + } } - std::sort(cellSet.begin(), cellSet.end()); + vtkIdType numberOfIds = cellIdsList->GetNumberOfIds(); + vtkIdType* cellIds = cellIdsList->GetPointer(0); + vtkIdType* endCellIds = cellIds + numberOfIds; + std::sort(cellIds, endCellIds); // Sorting will have grouped the cells into contiguous runs. Determine the // length of the runs - if equal to npts, then a cell is present in all // sets, and if this cell is not the user-provided cellId, then this is a // cell common to all sets, hence it is a neighboring cell. - auto itr = cellSet.begin(); - while (itr != cellSet.end()) + if (numberOfIds == 0) + { + // no id will be returned + cellIdsList->Reset(); + return; + } + vtkIdType *itr = cellIds, *start; + vtkIdType numberOfOutputIds = 0, currentCell; + while (itr != endCellIds) { - auto start = itr; - vtkIdType currentCell = *itr; - while (itr != cellSet.end() && *itr == currentCell) + start = itr; + currentCell = *itr; + while (itr != endCellIds && *itr == currentCell) ++itr; // advance across this contiguous run // What is the size of the contiguous run? If equal to // the number of sets, then this is a neighboring cell. if (((itr - start) >= npts) && (currentCell != cellId)) { - cellIds->InsertNextId(currentCell); + // since this id will not be revisited, we can write the results in place + cellIds[numberOfOutputIds++] = currentCell; } } // while over the cell set + // change the length of the list to the number of neighbors + // the allocated space will not be touched + cellIdsList->SetNumberOfIds(numberOfOutputIds); } } // end anonymous namespace @@ -2083,6 +2106,18 @@ inline void GetCellNeighborsImp( //---------------------------------------------------------------------------- bool vtkUnstructuredGrid::IsCellBoundary(vtkIdType cellId, vtkIdType npts, const vtkIdType* pts) { + vtkNew cellIds; + cellIds->Allocate(256); + return this->IsCellBoundary(cellId, npts, pts, cellIds); +} + +//---------------------------------------------------------------------------- +bool vtkUnstructuredGrid::IsCellBoundary( + vtkIdType cellId, vtkIdType npts, const vtkIdType* pts, vtkIdList* cellIds) +{ + // Empty the list + cellIds->Reset(); + // Ensure that a valid neighborhood request is made. if (npts <= 0) { @@ -2100,12 +2135,12 @@ bool vtkUnstructuredGrid::IsCellBoundary(vtkIdType cellId, vtkIdType npts, const if (!this->Editable) { vtkStaticCellLinks* links = static_cast(this->Links.Get()); - return IsCellBoundaryImp(links, cellId, npts, pts); + return IsCellBoundaryImp(links, cellId, npts, pts, cellIds); } else { vtkCellLinks* links = static_cast(this->Links.Get()); - return IsCellBoundaryImp(links, cellId, npts, pts); + return IsCellBoundaryImp(links, cellId, npts, pts, cellIds); } } diff --git a/Common/DataModel/vtkUnstructuredGrid.h b/Common/DataModel/vtkUnstructuredGrid.h index 05c7a6cf0a5b..aee4b2487d7d 100644 --- a/Common/DataModel/vtkUnstructuredGrid.h +++ b/Common/DataModel/vtkUnstructuredGrid.h @@ -331,11 +331,13 @@ public: * a boundary entity of a specified cell (indicated by cellId). A boundary * entity is a topological feature used by exactly one cell. This method is * related to GetCellNeighbors() except that it simply indicates whether a - * topological feature is boundary - hence the method is faster. THIS - * METHOD IS THREAD SAFE IF FIRST CALLED FROM A SINGLE THREAD AND THE - * DATASET IS NOT MODIFIED. + * topological feature is boundary - hence the method is faster. CellIds in the + * second version are used as a temp buffer to avoid allocation internally, and + * it's faster. THIS METHOD IS THREAD SAFE IF FIRST CALLED FROM A + * SINGLE THREAD AND THE DATASET IS NOT MODIFIED. */ bool IsCellBoundary(vtkIdType cellId, vtkIdType npts, const vtkIdType* ptIds); + bool IsCellBoundary(vtkIdType cellId, vtkIdType npts, const vtkIdType* ptIds, vtkIdList* cellIds); ///@} ///@{ diff --git a/Filters/Geometry/vtkGeometryFilter.cxx b/Filters/Geometry/vtkGeometryFilter.cxx index a9e508f64077..7a83d8d8daa2 100644 --- a/Filters/Geometry/vtkGeometryFilter.cxx +++ b/Filters/Geometry/vtkGeometryFilter.cxx @@ -29,7 +29,6 @@ #include "vtkInformation.h" #include "vtkInformationVector.h" #include "vtkLogger.h" -#include "vtkMergePoints.h" #include "vtkNew.h" #include "vtkObjectFactory.h" #include "vtkPentagonalPrism.h" @@ -37,14 +36,11 @@ #include "vtkPolyData.h" #include "vtkPyramid.h" #include "vtkRectilinearGrid.h" -#include "vtkRectilinearGridGeometryFilter.h" -#include "vtkSMPThreadLocalObject.h" #include "vtkSMPTools.h" #include "vtkStaticCellLinksTemplate.h" #include "vtkStreamingDemandDrivenPipeline.h" #include "vtkStructuredData.h" #include "vtkStructuredGrid.h" -#include "vtkStructuredGridGeometryFilter.h" #include "vtkStructuredPoints.h" #include "vtkTetra.h" #include "vtkUniformGrid.h" @@ -733,7 +729,7 @@ void ExtractCellGeometry(vtkUnstructuredGrid* input, vtkIdType cellId, int cellT ptIds[2] = pts[faceVerts[2]]; if (!cellVis) // most common, fastpath: geometry not cropped { - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); } else // slower path, geometry cropped via point id, cell id, and/or extent { @@ -758,7 +754,7 @@ void ExtractCellGeometry(vtkUnstructuredGrid* input, vtkIdType cellId, int cellT ptIds[3] = pts[faceVerts[pixelConvert[3]]]; if (!cellVis) // most common, fastpath: geometry not cropped { - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); } else // slower path, geometry cropped via point id, cell id, and/or extent { @@ -783,7 +779,7 @@ void ExtractCellGeometry(vtkUnstructuredGrid* input, vtkIdType cellId, int cellT ptIds[3] = pts[faceVerts[3]]; if (!cellVis) // most common, fastpath: geometry not cropped { - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); } else // slower path, geometry cropped via point id, cell id, and/or extent { @@ -812,7 +808,7 @@ void ExtractCellGeometry(vtkUnstructuredGrid* input, vtkIdType cellId, int cellT } if (!cellVis) // most common, fastpath: geometry not cropped { - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); } else // slower path, geometry cropped via point id, cell id, and/or extent { @@ -841,7 +837,7 @@ void ExtractCellGeometry(vtkUnstructuredGrid* input, vtkIdType cellId, int cellT } if (!cellVis) // most common, fastpath: geometry not cropped { - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); } else // slower path, geometry cropped via point id, cell id, and/or extent { @@ -872,7 +868,7 @@ void ExtractCellGeometry(vtkUnstructuredGrid* input, vtkIdType cellId, int cellT } if (!cellVis) // most common, fastpath: geometry not cropped { - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); } else // slower path, geometry cropped via point id, cell id, and/or extent { @@ -902,7 +898,7 @@ void ExtractCellGeometry(vtkUnstructuredGrid* input, vtkIdType cellId, int cellT } if (!cellVis) // most common, fastpath: geometry not cropped { - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); } else // slower path, geometry cropped via point id, cell id, and/or extent { @@ -929,7 +925,8 @@ void ExtractCellGeometry(vtkUnstructuredGrid* input, vtkIdType cellId, int cellT numFacePts = face->PointIds->GetNumberOfIds(); if (!cellVis) // most common, fastpath: geometry not cropped { - insertFace = input->IsCellBoundary(cellId, numFacePts, face->PointIds->GetPointer(0)); + insertFace = + input->IsCellBoundary(cellId, numFacePts, face->PointIds->GetPointer(0), cellIds); } else // slower path, geometry cropped via point id, cell id, and/or extent { diff --git a/Filters/Geometry/vtkMarkBoundaryFilter.cxx b/Filters/Geometry/vtkMarkBoundaryFilter.cxx index 63aeb10172a8..91774508ace9 100644 --- a/Filters/Geometry/vtkMarkBoundaryFilter.cxx +++ b/Filters/Geometry/vtkMarkBoundaryFilter.cxx @@ -329,7 +329,7 @@ int PolyDataExecute(vtkDataSet* dsInput, const unsigned char* ghosts, unsigned c // with unstructured grids. void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkIdType npts, const vtkIdType* pts, vtkUnstructuredGridCellIterator* cellIter, vtkGenericCell* cell, - MarkCellBoundary* marker) + MarkCellBoundary* marker, vtkIdList* cellIds) { vtkIdType faceId, numEdgePts, numFacePts; const int MAX_FACE_POINTS = 32; @@ -353,11 +353,11 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI case VTK_LINE: case VTK_POLY_LINE: // The end points, used by one line, are boundary - if (input->IsCellBoundary(cellId, 1, pts)) + if (input->IsCellBoundary(cellId, 1, pts, cellIds)) { marker->MarkCell(cellId, 0, 1, pts); } - if (input->IsCellBoundary(cellId, 1, pts + npts - 1)) + if (input->IsCellBoundary(cellId, 1, pts + npts - 1, cellIds)) { marker->MarkCell(cellId, 1, 1, pts + npts - 1); } @@ -371,7 +371,7 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI { edgePts[0] = pts[i]; edgePts[1] = pts[(i + 1) % npts]; - if (input->IsCellBoundary(cellId, 2, edgePts)) + if (input->IsCellBoundary(cellId, 2, edgePts, cellIds)) { marker->MarkCell(cellId, i, 2, edgePts); } @@ -390,7 +390,7 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI { edgePts[0] = pts[pixelConvert[i]]; edgePts[1] = pts[pixelConvert[(i + 1) % npts]]; - if (input->IsCellBoundary(cellId, 2, edgePts)) + if (input->IsCellBoundary(cellId, 2, edgePts, cellIds)) { marker->MarkCell(cellId, i, 2, edgePts); } @@ -405,7 +405,7 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI ptIds[0] = pts[faceVerts[0]]; ptIds[1] = pts[faceVerts[1]]; ptIds[2] = pts[faceVerts[2]]; - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); if (insertFace) { marker->MarkCell(cellId, faceId, numFacePts, ptIds); @@ -422,7 +422,7 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI ptIds[1] = pts[faceVerts[pixelConvert[1]]]; ptIds[2] = pts[faceVerts[pixelConvert[2]]]; ptIds[3] = pts[faceVerts[pixelConvert[3]]]; - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); if (insertFace) { marker->MarkCell(cellId, faceId, numFacePts, ptIds); @@ -439,7 +439,7 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI ptIds[1] = pts[faceVerts[1]]; ptIds[2] = pts[faceVerts[2]]; ptIds[3] = pts[faceVerts[3]]; - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); if (insertFace) { marker->MarkCell(cellId, faceId, numFacePts, ptIds); @@ -460,7 +460,7 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI ptIds[3] = pts[faceVerts[3]]; numFacePts = 4; } - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); if (insertFace) { marker->MarkCell(cellId, faceId, numFacePts, ptIds); @@ -481,7 +481,7 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI ptIds[3] = pts[faceVerts[3]]; numFacePts = 4; } - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); if (insertFace) { marker->MarkCell(cellId, faceId, numFacePts, ptIds); @@ -504,7 +504,7 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI ptIds[5] = pts[faceVerts[5]]; numFacePts = 6; } - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); if (insertFace) { marker->MarkCell(cellId, faceId, numFacePts, ptIds); @@ -526,7 +526,7 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI ptIds[4] = pts[faceVerts[4]]; numFacePts = 5; } - insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds); + insertFace = input->IsCellBoundary(cellId, numFacePts, ptIds, cellIds); if (insertFace) { marker->MarkCell(cellId, faceId, numFacePts, ptIds); @@ -544,7 +544,8 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI { vtkCell* face = cell->GetFace(j); numFacePts = face->PointIds->GetNumberOfIds(); - insertFace = input->IsCellBoundary(cellId, numFacePts, face->PointIds->GetPointer(0)); + insertFace = + input->IsCellBoundary(cellId, numFacePts, face->PointIds->GetPointer(0), cellIds); if (insertFace) { marker->MarkCell(cellId, j, numFacePts, face->PointIds->GetPointer(0)); @@ -558,7 +559,8 @@ void MarkUGCell(vtkUnstructuredGrid* input, vtkIdType cellId, int cellType, vtkI { vtkCell* edge = cell->GetEdge(j); numEdgePts = edge->PointIds->GetNumberOfIds(); - insertEdge = input->IsCellBoundary(cellId, numEdgePts, edge->PointIds->GetPointer(0)); + insertEdge = + input->IsCellBoundary(cellId, numEdgePts, edge->PointIds->GetPointer(0), cellIds); if (insertEdge) { marker->MarkCell(cellId, j, numEdgePts, edge->PointIds->GetPointer(0)); @@ -578,6 +580,7 @@ struct MarkUGrid : MarkCellBoundary // Working objects to avoid repeated allocation vtkSMPThreadLocal> Cell; vtkSMPThreadLocal> CellIter; + vtkSMPThreadLocal> CellIds; MarkUGrid(vtkUnstructuredGrid* grid, const unsigned char* ghosts, unsigned char* ptMarks, unsigned char* cellMarks, vtkIdType* faceMarks) @@ -591,12 +594,14 @@ struct MarkUGrid : MarkCellBoundary this->Cell.Local().TakeReference(vtkGenericCell::New()); this->CellIter.Local().TakeReference( static_cast(this->Grid->NewCellIterator())); + this->CellIds.Local().TakeReference(vtkIdList::New()); } void operator()(vtkIdType cellId, vtkIdType endCellId) { auto& cell = this->Cell.Local(); auto& cellIter = this->CellIter.Local(); + auto& cellIds = this->CellIds.Local(); for (cellIter->GoToCell(cellId); cellId < endCellId; ++cellId, cellIter->GoToNextCell()) { @@ -611,7 +616,7 @@ struct MarkUGrid : MarkCellBoundary vtkIdType npts = pointIdList->GetNumberOfIds(); vtkIdType* pts = pointIdList->GetPointer(0); - MarkUGCell(this->Grid, cellId, type, npts, pts, cellIter, cell, this); + MarkUGCell(this->Grid, cellId, type, npts, pts, cellIter, cell, this, cellIds); } // for all cells in this batch } -- GitLab From 38aa0395c27f5ccce36c70143e70bc6a64e5a5b1 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 21 Apr 2022 00:18:21 -0400 Subject: [PATCH 0048/1015] vtkDataSet: Multithread ComputeBounds --- Common/DataModel/vtkDataSet.cxx | 88 ++++++++++++++++++++++++--------- 1 file changed, 65 insertions(+), 23 deletions(-) diff --git a/Common/DataModel/vtkDataSet.cxx b/Common/DataModel/vtkDataSet.cxx index 1ff6a7059941..6ffa43f1a52d 100644 --- a/Common/DataModel/vtkDataSet.cxx +++ b/Common/DataModel/vtkDataSet.cxx @@ -30,11 +30,11 @@ #include "vtkIdList.h" #include "vtkInformation.h" #include "vtkInformationVector.h" -#include "vtkLagrangeHexahedron.h" #include "vtkLagrangeQuadrilateral.h" #include "vtkLagrangeWedge.h" #include "vtkMath.h" #include "vtkPointData.h" +#include "vtkSMPTools.h" #include "vtkSmartPointer.h" #include "vtkStructuredData.h" @@ -106,37 +106,79 @@ vtkCellIterator* vtkDataSet::NewCellIterator() } //------------------------------------------------------------------------------ -// Compute the data bounding box from data points. -void vtkDataSet::ComputeBounds() +struct ComputeBoundsFunctor { - int j; - vtkIdType i; - double* x; + vtkDataSet* DataSet; + vtkSMPThreadLocal> TLBounds; + std::array Bounds{}; - if (this->GetMTime() > this->ComputeTime) + ComputeBoundsFunctor(vtkDataSet* dataset) + : DataSet(dataset) { - if (this->GetNumberOfPoints()) + } + + void Initialize() + { + auto& bounds = this->TLBounds.Local(); + bounds[0] = bounds[2] = bounds[4] = VTK_DOUBLE_MAX; + bounds[1] = bounds[3] = bounds[5] = VTK_DOUBLE_MIN; + } + + void operator()(vtkIdType begin, vtkIdType end) + { + double x[3]; + uint8_t j; + auto& bounds = this->TLBounds.Local(); + for (vtkIdType pointId = begin; pointId < end; ++pointId) { - x = this->GetPoint(0); - this->Bounds[0] = this->Bounds[1] = x[0]; - this->Bounds[2] = this->Bounds[3] = x[1]; - this->Bounds[4] = this->Bounds[5] = x[2]; - for (i = 1; i < this->GetNumberOfPoints(); i++) + this->DataSet->GetPoint(pointId, x); + for (j = 0; j < 3; j++) { - x = this->GetPoint(i); - for (j = 0; j < 3; j++) + if (x[j] < bounds[2 * j]) { - if (x[j] < this->Bounds[2 * j]) - { - this->Bounds[2 * j] = x[j]; - } - if (x[j] > this->Bounds[2 * j + 1]) - { - this->Bounds[2 * j + 1] = x[j]; - } + bounds[2 * j] = x[j]; + } + if (x[j] > bounds[2 * j + 1]) + { + bounds[2 * j + 1] = x[j]; + } + } + } + } + + void Reduce() + { + this->Bounds[0] = this->Bounds[2] = this->Bounds[4] = VTK_DOUBLE_MAX; + this->Bounds[1] = this->Bounds[3] = this->Bounds[5] = VTK_DOUBLE_MIN; + for (const auto& bounds : this->TLBounds) + { + for (uint8_t j = 0; j < 3; j++) + { + if (bounds[2 * j] < this->Bounds[2 * j]) + { + this->Bounds[2 * j] = bounds[2 * j]; + } + if (bounds[2 * j + 1] > this->Bounds[2 * j + 1]) + { + this->Bounds[2 * j + 1] = bounds[2 * j + 1]; } } } + } +}; + +//------------------------------------------------------------------------------ +// Compute the data bounding box from data points. +void vtkDataSet::ComputeBounds() +{ + if (this->GetMTime() > this->ComputeTime) + { + if (this->GetNumberOfPoints()) + { + ComputeBoundsFunctor functor(this); + vtkSMPTools::For(0, this->GetNumberOfPoints(), functor); + std::copy(functor.Bounds.begin(), functor.Bounds.end(), this->Bounds); + } else { vtkMath::UninitializeBounds(this->Bounds); -- GitLab From 2c10917f8cca67781d5350a60e159678c90857fe Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 20 Apr 2022 19:25:02 -0400 Subject: [PATCH 0049/1015] vtkAbstractInterpolatedVelocityField: Optimize FindAndUpdateCell Previously FindCell would be called with the last cell and if that would fail it would try to do the same without the initial cell. This was WRONG because FindCell does that already(first checks the initial cell, if that does not help, it uses the point locator) This way FindCell cost is cut almost in half. Calls to EvaluatePosition and GetCell has been reduced after careful understanding of when they are needed (see comments). The quality of the results has been improved when surfaceDataSet is on. vtkCellLocatorStrategy can also be used now to FindClosestPointWithinRadius. Previously it could not be used. --- .../vtkAMRInterpolatedVelocityField.cxx | 6 +- .../vtkAbstractInterpolatedVelocityField.cxx | 247 +++++++----------- .../vtkAbstractInterpolatedVelocityField.h | 15 +- .../vtkCompositeInterpolatedVelocityField.cxx | 44 ++-- .../vtkCompositeInterpolatedVelocityField.h | 7 +- 5 files changed, 117 insertions(+), 202 deletions(-) diff --git a/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx index 7bedb5dc46a3..b0f6dfcd3f86 100644 --- a/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx @@ -56,7 +56,7 @@ vtkCxxSetObjectMacro(vtkAMRInterpolatedVelocityField, AmrDataSet, vtkOverlapping //------------------------------------------------------------------------------ vtkAMRInterpolatedVelocityField::vtkAMRInterpolatedVelocityField() { - this->Weights = new double[8]; + this->Weights.resize(8); this->AmrDataSet = nullptr; this->LastLevel = this->LastId = -1; } @@ -65,9 +65,7 @@ vtkAMRInterpolatedVelocityField::vtkAMRInterpolatedVelocityField() vtkAMRInterpolatedVelocityField::~vtkAMRInterpolatedVelocityField() { this->SetAmrDataSet(nullptr); - - delete[] this->Weights; - this->Weights = nullptr; + this->Weights.clear(); } //------------------------------------------------------------------------------ diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx index 9df893d97017..878a1b8efa11 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx @@ -42,8 +42,6 @@ vtkAbstractInterpolatedVelocityField::vtkAbstractInterpolatedVelocityField() { this->NumFuncs = 3; // u, v, w this->NumIndepVars = 4; // x, y, z, t - this->Weights = nullptr; - this->WeightsSize = 0; this->Caching = true; // Caching on by default this->CacheHit = 0; @@ -55,6 +53,10 @@ vtkAbstractInterpolatedVelocityField::vtkAbstractInterpolatedVelocityField() this->LastPCoords[1] = 0.0; this->LastPCoords[2] = 0.0; + this->LastClosestPoint[0] = 0.0; + this->LastClosestPoint[1] = 0.0; + this->LastClosestPoint[2] = 0.0; + this->VectorsType = 0; this->VectorsSelection = nullptr; this->NormalizeVector = false; @@ -74,9 +76,6 @@ vtkAbstractInterpolatedVelocityField::~vtkAbstractInterpolatedVelocityField() this->LastDataSet = nullptr; this->SetVectorsSelection(nullptr); - delete[] this->Weights; - this->Weights = nullptr; - // Need to free strategies and other information associated with each // dataset. There is a special case where the strategy cannot be deleted // because is has been specified by the user. @@ -298,177 +297,116 @@ int vtkAbstractInterpolatedVelocityField::FunctionValues(vtkDataSet* dataset, do return 1; } -//------------------------------------------------------------------------------ -bool vtkAbstractInterpolatedVelocityField::CheckPCoords(double pcoords[3]) -{ - for (int i = 0; i < 3; i++) - { - if (pcoords[i] < 0 || pcoords[i] > 1) - { - return false; - } - } - return true; -} - //------------------------------------------------------------------------------ bool vtkAbstractInterpolatedVelocityField::FindAndUpdateCell( vtkDataSet* dataset, vtkFindCellStrategy* strategy, double* x) { - double tol2, dist2; - if (this->SurfaceDataset) - { - tol2 = dataset->GetLength() * dataset->GetLength() * - vtkAbstractInterpolatedVelocityField::SURFACE_TOLERANCE_SCALE; - } - else + const double diagonalLength2 = dataset->GetLength2(); + const double tol2 = diagonalLength2 * + (this->SurfaceDataset ? vtkAbstractInterpolatedVelocityField::SURFACE_TOLERANCE_SCALE + : vtkAbstractInterpolatedVelocityField::TOLERANCE_SCALE); + const double tol = std::sqrt(tol2); + + double dist2; + int inside; + vtkIdType closestPointFound; + bool foundInCache = false; + // See if the point is in the cached cell + if (this->Caching && this->LastCellId != -1) { - tol2 = dataset->GetLength() * dataset->GetLength() * - vtkAbstractInterpolatedVelocityField::TOLERANCE_SCALE; - } + // Use cache cell only if point is inside + int ret = this->CurrentCell->EvaluatePosition( + x, this->LastClosestPoint, this->LastSubId, this->LastPCoords, dist2, this->Weights.data()); + // this->LastClosestPoint has been computed - double closest[3]; - bool found = false; - if (this->Caching) + // check if point is inside the cell + if (ret == 1) + { + this->CacheHit++; + foundInCache = true; + } + } + if (!foundInCache) { - bool out = false; - - // See if the point is in the cached cell - if (this->LastCellId != -1) + if (strategy) { - // Use cache cell only if point is inside - // or , with surface , not far and in pccords - int ret = this->CurrentCell->EvaluatePosition( - x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); - if (ret == -1 || (ret == 0 && !this->SurfaceDataset) || - (this->SurfaceDataset && (dist2 > tol2 || !this->CheckPCoords(this->LastPCoords)))) + // strategies are used for subclasses of vtkPointSet + if (vtkCellLocatorStrategy::SafeDownCast(strategy)) { - out = true; + // this location strategy uses a vtkStaticCellLocator which is a 3D grid with bins + // and each bin has the cellIds that are inside this bin (robust but possibly slower) + this->LastCellId = strategy->FindCell(x, nullptr, this->CurrentCell, -1, tol2 /*not used*/, + this->LastSubId, this->LastPCoords, this->Weights.data()); + // this strategy once it finds a cell where the given point is inside it stops + // immediately, so this->CurrentCell contains the cell we want } - - if (out) + else // vtkClosestPointStrategy { - this->CacheMiss++; - - dataset->GetCell(this->LastCellId, this->LastCell); - - this->LastCellId = (strategy == nullptr - ? dataset->FindCell(x, this->LastCell, this->CurrentCell, this->LastCellId, tol2, - this->LastSubId, this->LastPCoords, this->Weights) - : strategy->FindCell(x, this->LastCell, this->CurrentCell, this->LastCellId, tol2, - this->LastSubId, this->LastPCoords, this->Weights)); - - if (this->LastCellId != -1 && - (!this->SurfaceDataset || this->CheckPCoords(this->LastPCoords))) + // this location strategy will first look at the neighbor cells of the cached cell (if any) + // and if that fails it will use jump and walk technique (not robust but possibly faster) + if (this->Caching && this->LastCellId != -1) { - dataset->GetCell(this->LastCellId, this->CurrentCell); - found = true; + // closest-point cell location can benefit from the initial cached cell, so we extract it + dataset->GetCell(this->LastCellId, this->LastCell); + this->LastCellId = strategy->FindCell(x, this->LastCell, this->CurrentCell, + this->LastCellId, tol2, this->LastSubId, this->LastPCoords, this->Weights.data()); + foundInCache = this->LastCellId != -1; + } + else + { + this->LastCellId = strategy->FindCell(x, nullptr, this->CurrentCell, -1, tol2, + this->LastSubId, this->LastPCoords, this->Weights.data()); } + // this strategy once it finds a cell where the given point is inside it stops + // immediately, so this->CurrentCell contains the cell we want } - else + } + else + { + // the classes that do not use a strategy are vtkUniformGrid, vtkImageData, vtkRectilinearGrid + this->LastCellId = dataset->FindCell( + x, nullptr, nullptr, -1, tol2, this->LastSubId, this->LastPCoords, this->Weights.data()); + // these classes don't use CurrentCell, so we will need to extract it if we found something + } + // if we found a cell + if (this->LastCellId != -1) + { + if (foundInCache) { this->CacheHit++; - found = true; } - } - } // if caching - - if (!found) - { - // if the cell is not found in cache, do a global search (ignore initial - // cell if there is one) - this->LastCellId = - (strategy == nullptr ? dataset->FindCell(x, nullptr, this->CurrentCell, -1, tol2, - this->LastSubId, this->LastPCoords, this->Weights) - : strategy->FindCell(x, nullptr, this->CurrentCell, -1, tol2, - this->LastSubId, this->LastPCoords, this->Weights)); - - if (this->LastCellId != -1 && (!this->SurfaceDataset || this->CheckPCoords(this->LastPCoords))) - { - dataset->GetCell(this->LastCellId, this->CurrentCell); + else + { + this->CacheMiss++; + } + // extract the cell that we found if we didn't use a strategy + if (!strategy) + { + dataset->GetCell(this->LastCellId, this->CurrentCell); + } + // pcoords, weights and subid are all valid, so we can compute the closest point + // using EvaluateLocation + this->CurrentCell->EvaluateLocation( + this->LastSubId, this->LastPCoords, this->LastClosestPoint, this->Weights.data()); } else { + this->CacheMiss++; if (this->SurfaceDataset) { - // Still cannot find cell, use a locator to find a (arbitrary) cell, for 2D surface - vtkIdType idPoint = dataset->FindPoint(x); - if (idPoint < 0) - { - this->LastCellId = -1; - return false; - } - - dataset->GetPointCells(idPoint, this->CellList); - double minDist2 = dataset->GetLength() * dataset->GetLength(); - vtkIdType minDistId = -1; - for (vtkIdType idCell = 0; idCell < this->CellList->GetNumberOfIds(); idCell++) - { - this->LastCellId = this->CellList->GetId(idCell); - dataset->GetCell(this->LastCellId, this->CurrentCell); - int ret = this->CurrentCell->EvaluatePosition( - x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); - if (ret != -1 && dist2 < minDist2) - { - minDistId = this->LastCellId; - minDist2 = dist2; - } - } - - if (minDistId == -1) - { - this->LastCellId = -1; - return false; - } - - // Recover closest cell info - this->LastCellId = minDistId; - dataset->GetCell(this->LastCellId, this->CurrentCell); - int ret = this->CurrentCell->EvaluatePosition( - x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); - - // Find Point being not perfect to find cell, check for closer cells - bool edge = false; - bool closer; - while (true) - { - this->CurrentCell->CellBoundary(this->LastSubId, this->LastPCoords, this->BoundaryPoints); - dataset->GetCellNeighbors(this->LastCellId, this->BoundaryPoints, this->NeighCells); - if (this->NeighCells->GetNumberOfIds() == 0) - { - edge = true; - break; - } - closer = false; - for (vtkIdType neighCellId = 0; neighCellId < this->NeighCells->GetNumberOfIds(); - neighCellId++) - { - this->LastCellId = this->NeighCells->GetId(neighCellId); - dataset->GetCell(this->LastCellId, this->CurrentCell); - ret = this->CurrentCell->EvaluatePosition( - x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); - if (ret != -1 && dist2 < minDist2) - { - minDistId = this->LastCellId; - minDist2 = dist2; - closer = true; - } - } - if (!closer) - { - break; - } - } - - // Recover closest cell info - if (!edge) + // if we are on a surface dataset, we can use the strategy to find the closest point + closestPointFound = strategy->FindClosestPointWithinRadius(x, tol, this->LastClosestPoint, + this->CurrentCell, this->LastCellId, this->LastSubId, dist2, inside); + // FindClosestPointWithinRadius does not return the correct CurrentCell, so in case we find + // something we need to extract it and calculate the weights + if (closestPointFound == 1) { - this->LastCellId = minDistId; dataset->GetCell(this->LastCellId, this->CurrentCell); - this->CurrentCell->EvaluatePosition( - x, closest, this->LastSubId, this->LastPCoords, dist2, this->Weights); + // we don't need to calculate the closest point, but we do need to calculate the weights + this->CurrentCell->EvaluatePosition(x, nullptr /*closestPoint*/, this->LastSubId, + this->LastPCoords, dist2, this->Weights.data()); } - if (minDist2 > tol2 || (!this->CheckPCoords(this->LastPCoords) && edge)) + else { this->LastCellId = -1; return false; @@ -543,7 +481,7 @@ bool vtkAbstractInterpolatedVelocityField::InterpolatePoint(vtkPointData* outPD, } outPD->InterpolatePoint( - this->LastDataSet->GetPointData(), outIndex, this->CurrentCell->PointIds, this->Weights); + this->LastDataSet->GetPointData(), outIndex, this->CurrentCell->PointIds, this->Weights.data()); return true; } @@ -623,9 +561,10 @@ void vtkAbstractInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent inde this->CurrentCell->PrintSelf(os, indent); os << indent << "Last P-Coords: " << this->LastPCoords[0] << ", " << this->LastPCoords[1] << ", " << this->LastPCoords[2] << endl; - os << indent << "Weights Size: " << this->WeightsSize << endl; + os << indent << "Last ClosestPoint: " << this->LastClosestPoint[0] << ", " + << this->LastClosestPoint[1] << ", " << this->LastClosestPoint[2] << endl; os << indent << "Last Weights: " << endl; - for (int i = 0; i < this->WeightsSize; ++i) + for (size_t i = 0; i < this->Weights.size(); ++i) { os << indent << this->Weights[i] << ", "; } diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h index f213678e32da..7ac3e5e08e95 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h @@ -84,7 +84,8 @@ #include "vtkFunctionSet.h" #include "vtkNew.h" // for vtkNew -#include // for cache +#include // for cache +#include // for weights class vtkCompositeDataSet; class vtkDataObject; @@ -275,24 +276,21 @@ protected: int CacheHit; int CacheMiss; - int WeightsSize; bool Caching; bool NormalizeVector; bool ForceSurfaceTangentVector; bool SurfaceDataset; int VectorsType; char* VectorsSelection; - double* Weights; + std::vector Weights; double LastPCoords[3]; int LastSubId; + double LastClosestPoint[3]; vtkIdType LastCellId; vtkDataSet* LastDataSet; vtkNew LastCell; vtkNew CurrentCell; vtkNew PointIds; - vtkNew CellList; - vtkNew BoundaryPoints; - vtkNew NeighCells; /** * Make sure the velocity field is initialized: record the @@ -344,11 +342,6 @@ protected: */ virtual int FunctionValues(vtkDataSet* ds, double* x, double* f); - /** - * Check that all three pcoords are between 0 and 1 included. - */ - virtual bool CheckPCoords(double pcoords[3]); - /** * Try to find the cell closest to provided x point in provided dataset, * By first testing inclusion in it's cached cell and neighbor diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx index 3ba85e7549d5..889413d2048d 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx @@ -25,15 +25,10 @@ vtkCompositeInterpolatedVelocityField::vtkCompositeInterpolatedVelocityField() { this->LastDataSetIndex = 0; - this->DataSets = new vtkCompositeInterpolatedVelocityFieldDataSetsType; } //------------------------------------------------------------------------------ -vtkCompositeInterpolatedVelocityField::~vtkCompositeInterpolatedVelocityField() -{ - delete this->DataSets; - this->DataSets = nullptr; -} +vtkCompositeInterpolatedVelocityField::~vtkCompositeInterpolatedVelocityField() = default; //------------------------------------------------------------------------------ // Copy the list of datasets to copy from. @@ -49,12 +44,10 @@ void vtkCompositeInterpolatedVelocityField::CopyParameters( { return; } - *(this->DataSets) = *(obj->DataSets); + this->DataSets = obj->DataSets; // The weights must be copied as well - this->WeightsSize = obj->WeightsSize; - delete[] this->Weights; - this->Weights = new double[obj->WeightsSize]; + this->Weights.resize(obj->Weights.size()); } //------------------------------------------------------------------------------ @@ -67,14 +60,12 @@ void vtkCompositeInterpolatedVelocityField::AddDataSet(vtkDataSet* dataset) } // insert the dataset (do NOT register the dataset to 'this') - this->DataSets->push_back(dataset); + this->DataSets.push_back(dataset); - int size = dataset->GetMaxCellSize(); - if (size > this->WeightsSize) + size_t size = dataset->GetMaxCellSize(); + if (size > this->Weights.size()) { - this->WeightsSize = size; - delete[] this->Weights; - this->Weights = new double[size]; + this->Weights.resize(size); } } @@ -82,7 +73,7 @@ void vtkCompositeInterpolatedVelocityField::AddDataSet(vtkDataSet* dataset) void vtkCompositeInterpolatedVelocityField::SetLastCellId(vtkIdType c, int dataindex) { this->LastCellId = c; - this->LastDataSet = (*this->DataSets)[dataindex]; + this->LastDataSet = this->DataSets[dataindex]; // If the dataset changes, then the cached cell is invalidated. We might as // well prefetch the cached cell either way. @@ -98,9 +89,9 @@ void vtkCompositeInterpolatedVelocityField::SetLastCellId(vtkIdType c, int datai int vtkCompositeInterpolatedVelocityField::FunctionValues(double* x, double* f) { vtkDataSet* ds; - if (!this->LastDataSet && !this->DataSets->empty()) + if (!this->LastDataSet && !this->DataSets.empty()) { - ds = (*this->DataSets)[0]; + ds = this->DataSets[0]; this->LastDataSet = ds; this->LastDataSetIndex = 0; } @@ -116,10 +107,9 @@ int vtkCompositeInterpolatedVelocityField::FunctionValues(double* x, double* f) { // Okay need to check other datasets since we are outside of the current dataset. for (this->LastDataSetIndex = 0; - this->LastDataSetIndex < static_cast(this->DataSets->size()); - this->LastDataSetIndex++) + this->LastDataSetIndex < static_cast(this->DataSets.size()); this->LastDataSetIndex++) { - ds = this->DataSets->operator[](this->LastDataSetIndex); + ds = this->DataSets[this->LastDataSetIndex]; if (ds && ds->GetNumberOfPoints() > 0 && ds != this->LastDataSet) { this->ClearLastCellId(); @@ -133,7 +123,7 @@ int vtkCompositeInterpolatedVelocityField::FunctionValues(double* x, double* f) } this->LastCellId = -1; this->LastDataSetIndex = 0; - this->LastDataSet = (*this->DataSets)[0]; + this->LastDataSet = this->DataSets[0]; return 0; } @@ -154,9 +144,9 @@ int vtkCompositeInterpolatedVelocityField::SnapPointOnCell(double* pOrigin, doub { return 0; } - double dist2; - this->CurrentCell->EvaluatePosition( - pOrigin, pSnap, this->LastSubId, this->LastPCoords, dist2, this->Weights); + pSnap[0] = this->LastClosestPoint[0]; + pSnap[1] = this->LastClosestPoint[1]; + pSnap[2] = this->LastClosestPoint[2]; return 1; } @@ -165,6 +155,6 @@ void vtkCompositeInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent ind { this->Superclass::PrintSelf(os, indent); - os << indent << "DataSets: " << this->DataSets << endl; + os << indent << "Number of DataSets: " << this->DataSets.size() << endl; os << indent << "Last Dataset Index: " << this->LastDataSetIndex << endl; } diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h index fd6654f85739..d2775ab1f3d1 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h @@ -115,16 +115,11 @@ protected: } int LastDataSetIndex; - vtkCompositeInterpolatedVelocityFieldDataSetsType* DataSets; + std::vector DataSets; private: vtkCompositeInterpolatedVelocityField(const vtkCompositeInterpolatedVelocityField&) = delete; void operator=(const vtkCompositeInterpolatedVelocityField&) = delete; }; -typedef std::vector DataSetsTypeBase; -class vtkCompositeInterpolatedVelocityFieldDataSetsType : public DataSetsTypeBase -{ -}; - #endif -- GitLab From e51f691664e8a256bae2eb0e27ca5cc43a36378d Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 21 Apr 2022 08:48:52 -0400 Subject: [PATCH 0050/1015] vtkPlaneCutter: Fix warnings --- Filters/Core/vtkPlaneCutter.cxx | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Filters/Core/vtkPlaneCutter.cxx b/Filters/Core/vtkPlaneCutter.cxx index c78ec2ec94a7..0ed6a87ed0dd 100644 --- a/Filters/Core/vtkPlaneCutter.cxx +++ b/Filters/Core/vtkPlaneCutter.cxx @@ -1793,7 +1793,7 @@ int vtkPlaneCutter::ExecuteUniformGridAMR( tempPDC->GetPartitionedDataSet(index), false /*copyStructure*/); } output->ShallowCopy(tempPDC); - return static_cast(ret) == tempPDC->GetNumberOfPartitionedDataSets() ? 1 : 0; + return ret == static_cast(tempPDC->GetNumberOfPartitionedDataSets()) ? 1 : 0; } //------------------------------------------------------------------------------ @@ -1808,7 +1808,7 @@ int vtkPlaneCutter::ExecutePartitionedDataCollection( ret += this->ExecutePartitionedData(input->GetPartitionedDataSet(index), output->GetPartitionedDataSet(index), false /*copyStructure*/); } - return static_cast(ret) == input->GetNumberOfPartitionedDataSets() ? 1 : 0; + return ret == static_cast(input->GetNumberOfPartitionedDataSets()) ? 1 : 0; } //------------------------------------------------------------------------------ @@ -1828,7 +1828,7 @@ int vtkPlaneCutter::ExecutePartitionedData( ret += this->ExecuteDataSet(inputDS, this->GetSphereTree(inputDS), outputPolyData); output->SetPartition(cc, outputPolyData); } - return static_cast(ret) == input->GetNumberOfPartitions() ? 1 : 0; + return ret == static_cast(input->GetNumberOfPartitions()) ? 1 : 0; } //------------------------------------------------------------------------------ -- GitLab From b241a7c9188282baa60eb5a07e3e6d9543796dce Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Fri, 15 Apr 2022 12:17:39 -0400 Subject: [PATCH 0051/1015] Add changelog --- .../improve-streamtracer-performance-correctness.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) create mode 100644 Documentation/release/dev/improve-streamtracer-performance-correctness.md diff --git a/Documentation/release/dev/improve-streamtracer-performance-correctness.md b/Documentation/release/dev/improve-streamtracer-performance-correctness.md new file mode 100644 index 000000000000..82a7c0a0e40e --- /dev/null +++ b/Documentation/release/dev/improve-streamtracer-performance-correctness.md @@ -0,0 +1,12 @@ +## vtkStreamTracer: Improve performance and correctness + +`vtkStreamTracer` has be enabled to run using SMP when 1 MPI is core is used. Moreover, `FindCell` operation using both +`vtkCellLocatorStrategy` and `vtkClosestPointStrategy` has been improved performance-wise. Also, `vtkFindCellStrategy` +has a `FindClosestPointWithinRadius` function which both `vtkCellLocatorStrategy` and `vtkClosestPointStrategy` +implement. `vtkCellLocatorStrategy` does it using a CellLocator, and `vtkClosestPointStrategy` does it using the +approach previously existing in `vtkAbstractInterpolatedVelocityField`'s `FindCellAndUpdate`. Similarly, since now both +`vtkInterpolatedVelocityField` and `vtkCellLocatorInterpolatedVelocityField` should be able to perform `SnapPointOnCell` +, and they were almost identical (except the used strategy), their implementation has been moved to their parent class +`vtkCompositeInterpolatedVelocityField`. Furthermore, `vtkAbstractInterpolatedVelocityField`'s `FindCellAndUpdate` has +been carefully optimized to perform the minimum number of `EvaluatePosition`/`EvaluateLocation`/`GetCell`. Finally, the +quality when the SurfaceDataSet is enabled has been improved significantly. -- GitLab From 5bda29175b7f73c371db1061b851ee0260bb2a2e Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Thu, 28 Apr 2022 00:02:08 -0400 Subject: [PATCH 0052/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 9d15a38d4c7d..4572ec48265e 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220427) +set(VTK_BUILD_VERSION 20220428) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From d9b0baafe1daf09cbf451d6f297f598f94db108d Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 28 Apr 2022 11:10:17 -0400 Subject: [PATCH 0053/1015] fmt-tpl: Update fmt tag --- ThirdParty/fmt/update.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ThirdParty/fmt/update.sh b/ThirdParty/fmt/update.sh index a14e8046c8d3..5cd582def1d5 100755 --- a/ThirdParty/fmt/update.sh +++ b/ThirdParty/fmt/update.sh @@ -8,7 +8,7 @@ readonly name="fmt" readonly ownership="{fmt} Upstream " readonly subtree="ThirdParty/$name/vtk$name" readonly repo="https://gitlab.kitware.com/third-party/fmt.git" -readonly tag="for/vtk-20220405-8.1.1" +readonly tag="for/vtk-20220428-8.1.1" readonly paths=" .gitattributes include/fmt/*.h -- GitLab From 2c5a9925499a6bba0572a86cce09a7e672f8bab8 Mon Sep 17 00:00:00 2001 From: {fmt} Upstream Date: Thu, 28 Apr 2022 11:03:22 -0400 Subject: [PATCH 0054/1015] fmt 2022-04-28 (d4e66697) Code extracted from: https://gitlab.kitware.com/third-party/fmt.git at commit d4e666975aae73be846e61c18a4a39322cbdd53d (for/vtk-20220428-8.1.1). --- vtkfmt/core.h | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/vtkfmt/core.h b/vtkfmt/core.h index ca1bee535101..4842f049b26e 100644 --- a/vtkfmt/core.h +++ b/vtkfmt/core.h @@ -1456,8 +1456,8 @@ template struct arg_mapper { !std::is_const>::value || has_fallback_formatter::value> {}; -#if FMT_MSC_VER != 0 && FMT_MSC_VER < 1910 - // Workaround a bug in MSVC. +#if (FMT_MSC_VER != 0 && FMT_MSC_VER < 1910) || FMT_ICC_VERSION != 0 + // Workaround a bug in MSVC and Intel (Issue 2746). template FMT_CONSTEXPR FMT_INLINE auto do_map(T&& val) -> T& { return val; } -- GitLab From df71884a52c5993492ffec8583c7203e0473b502 Mon Sep 17 00:00:00 2001 From: Jaswant Panchumarti Date: Thu, 28 Apr 2022 11:22:33 -0400 Subject: [PATCH 0055/1015] Fix Displacement Magnitude Bug - addresses paraview/paraview#21192 - include the displ magnitude in the cache key string. --- IO/IOSS/vtkIOSSReader.cxx | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/IO/IOSS/vtkIOSSReader.cxx b/IO/IOSS/vtkIOSSReader.cxx index 7634ffc27e39..79d949f5f674 100644 --- a/IO/IOSS/vtkIOSSReader.cxx +++ b/IO/IOSS/vtkIOSSReader.cxx @@ -78,6 +78,7 @@ #include #include #include +#include #include #include #include @@ -309,7 +310,7 @@ public: vtkIOSSUtilities::DatabaseFormatType GetFormat() const { return this->Format; } void SetDisplacementMagnitude(double s) { this->DisplacementMagnitude = s; } - bool GetDisplacementMagnitude() { return this->DisplacementMagnitude; } + double GetDisplacementMagnitude() { return this->DisplacementMagnitude; } //@{ /** @@ -2742,7 +2743,8 @@ bool vtkIOSSReader::vtkInternals::ApplyDisplacements(vtkPointSet* grid, Ioss::Re } auto& cache = this->Cache; - const auto xformPtsCacheKey = "__vtk_xformed_pts_" + std::to_string(timestep); + const auto xformPtsCacheKey = "__vtk_xformed_pts_" + std::to_string(timestep) + + std::to_string(std::hash{}(this->DisplacementMagnitude)); if (auto xformedPts = vtkPoints::SafeDownCast(cache.Find(group_entity, xformPtsCacheKey))) { assert(xformedPts->GetNumberOfPoints() == grid->GetNumberOfPoints()); -- GitLab From 65e6c884737633a0731925a82a4571e995621496 Mon Sep 17 00:00:00 2001 From: Cory Quammen Date: Thu, 28 Apr 2022 15:49:44 -0400 Subject: [PATCH 0056/1015] Replace range update This fixes an issue on Intel compilers that would throw a floating-point exception if NaN values were encountered in a data array. Follow up to dbf95456f6b1b041032f54e41b70ec447c09896c. --- Common/Core/vtkDataArrayPrivate.txx | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/Common/Core/vtkDataArrayPrivate.txx b/Common/Core/vtkDataArrayPrivate.txx index bf983f9988df..89c0a92f0052 100644 --- a/Common/Core/vtkDataArrayPrivate.txx +++ b/Common/Core/vtkDataArrayPrivate.txx @@ -228,8 +228,7 @@ public: { if (!detail::isinf(value)) { - range[j] = detail::min(range[j], value); - range[j + 1] = detail::max(range[j + 1], value); + vtkMathUtilities::UpdateRange(range[j], range[j + 1], value); } j += 2; } -- GitLab From 6519e779f12c5b35fd577adf4640c3483e9ee5d8 Mon Sep 17 00:00:00 2001 From: Andrew Maclean Date: Fri, 29 Apr 2022 08:36:15 +1000 Subject: [PATCH 0057/1015] Making the cmake command simpler --- Documentation/dev/getting_started_linux.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Documentation/dev/getting_started_linux.md b/Documentation/dev/getting_started_linux.md index ec5df7c21e23..19ab0e1766e5 100644 --- a/Documentation/dev/getting_started_linux.md +++ b/Documentation/dev/getting_started_linux.md @@ -61,7 +61,7 @@ mkdir -p ~/dev/{vtk/{src,build},my-tests} cd ~/dev/vtk/ git clone --recursive https://gitlab.kitware.com/vtk/vtk.git src cd ~/dev/vtk/build -cmake -S"~/dev/vtk/src" -DVTK_WRAP_PYTHON:STR=ON -GNinja +cmake ../src -DVTK_WRAP_PYTHON=ON -GNinja # Build using the generator specified in cmake. cmake --build . ``` @@ -79,7 +79,7 @@ Now download the VTK source from [VTK Releases][vtk-download], untar it into `~/ ``` bash cd ~/dev/vtk/build -cmake -S"~/dev/vtk/VTK-x.y.z" -DVTK_WRAP_PYTHON:STR=ON -GNinja +cmake ../VTK-x.y.z -DVTK_WRAP_PYTHON=ON -GNinja # Build using the generator specified in cmake. cmake --build . ``` @@ -106,7 +106,7 @@ vtkpython CylinderExample.py python3 CylinderExample.py # Build the C++ version. cd ~/dev/my-tests/CylinderExample/build -cmake -S".." -GNinja +cmake .. -GNinja # Build using the generator specified in cmake. cmake --build . # Test the C++ build. -- GitLab From 0ebda56813a3a16df8560469b867b9fb79411daa Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Fri, 29 Apr 2022 00:01:23 -0400 Subject: [PATCH 0058/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 4572ec48265e..9ed449623b7e 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220428) +set(VTK_BUILD_VERSION 20220429) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 09a74bb7f2cb54698823268039cd5ef8586a2782 Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Fri, 22 Apr 2022 13:56:33 -0600 Subject: [PATCH 0059/1015] Raise an error if external data store is needed For builds from tarballs, if the user turned on VTK_BUILD_TESTING, cmake used to silently turn it off because the default location for downloading external data, SOURCE_DIR/.ExternalData, exists in the VTK git repository, but not in the release tarballs. After this commit, if SOURCE_DIR/.ExternalData is missing and if there is no ExternalData or VTKExternalData directory, then cmake raises a FATAL_ERROR and asks the user to download the VTKData tarball, which contains the .ExternalData directory. --- CMake/vtkTesting.cmake | 27 ++++++++++++++++++--------- 1 file changed, 18 insertions(+), 9 deletions(-) diff --git a/CMake/vtkTesting.cmake b/CMake/vtkTesting.cmake index 03e4099ae178..d343303847a2 100644 --- a/CMake/vtkTesting.cmake +++ b/CMake/vtkTesting.cmake @@ -4,16 +4,25 @@ set_property(CACHE VTK_BUILD_TESTING PROPERTY STRINGS "ON;OFF;WANT") -if (NOT EXISTS "${VTK_SOURCE_DIR}/.ExternalData/README.rst") - # This file is always present in version-controlled source trees - # so we must have been extracted from a source tarball with no - # data objects needed for testing. Turn off tests by default - # since enabling them requires network access or manual data - # store configuration. - set(VTK_BUILD_TESTING OFF) -endif () - if (VTK_BUILD_TESTING) + if (NOT VTK_DATA_STORE) + # These checks must be synchronized with vtkExternalData.cmake + if (NOT EXISTS "${VTK_SOURCE_DIR}/.ExternalData/README.rst" AND + NOT IS_DIRECTORY "${CMAKE_SOURCE_DIR}/../VTKExternalData" AND + NOT IS_DIRECTORY "${CMAKE_SOURCE_DIR}/../ExternalData" AND + NOT DEFINED "ENV{VTKExternalData_OBJECT_STORES}" AND + NOT DEFINED "ENV{ExternalData_OBJECT_STORES}") + + # The file .ExternalData/README.rst exists in the VTK git repository + # but is not included in the VTK-x.y.z.tar.gz release tarball, only + # in the VTKData-x.y.z.tar.gz tarball. + message(FATAL_ERROR "VTK_BUILD_TESTING is ${VTK_BUILD_TESTING}, but " + "there is no ExternalData directory! Please download VTKData, " + "which contains an .ExternalData directory that must go into " + "your VTK source directory (including the leading dot).") + endif () + endif () + include(vtkExternalData) include(CTest) set_property(CACHE BUILD_TESTING -- GitLab From 7c511328e10dec1053fdeebba66e174d69567289 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Fri, 29 Apr 2022 16:31:57 +0200 Subject: [PATCH 0060/1015] Fix warnings --- Filters/General/vtkGradientFilter.cxx | 2 +- Filters/Parallel/Testing/Cxx/TestAlignImageDataSetFilter.cxx | 2 +- Filters/Parallel/vtkAlignImageDataSetFilter.cxx | 2 +- Interaction/Widgets/Testing/Cxx/TestLineWidget2b.cxx | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/Filters/General/vtkGradientFilter.cxx b/Filters/General/vtkGradientFilter.cxx index 557e8ef5c84a..d6651c824576 100644 --- a/Filters/General/vtkGradientFilter.cxx +++ b/Filters/General/vtkGradientFilter.cxx @@ -351,7 +351,7 @@ int vtkGradientFilter::RequestData(vtkInformation* vtkNotUsed(request), output->IsA("vtkRectilinearGrid")) { vtkUnsignedCharArray* ghosts = nullptr; - unsigned char hiddenGhost; + unsigned char hiddenGhost = 0; int dims[3]; if (auto im = vtkImageData::SafeDownCast(output)) { diff --git a/Filters/Parallel/Testing/Cxx/TestAlignImageDataSetFilter.cxx b/Filters/Parallel/Testing/Cxx/TestAlignImageDataSetFilter.cxx index bb8ce5502de7..4ca8dc153a3e 100644 --- a/Filters/Parallel/Testing/Cxx/TestAlignImageDataSetFilter.cxx +++ b/Filters/Parallel/Testing/Cxx/TestAlignImageDataSetFilter.cxx @@ -59,7 +59,7 @@ bool Validate(vtkDataObject* dobj, vtkVector3d origin) } -int TestAlignImageDataSetFilter(int argc, char* argv[]) +int TestAlignImageDataSetFilter(int vtkNotUsed(argc), char* vtkNotUsed(argv)[]) { vtkNew pd; diff --git a/Filters/Parallel/vtkAlignImageDataSetFilter.cxx b/Filters/Parallel/vtkAlignImageDataSetFilter.cxx index 691a2ff0f49d..47fc1d3da3df 100644 --- a/Filters/Parallel/vtkAlignImageDataSetFilter.cxx +++ b/Filters/Parallel/vtkAlignImageDataSetFilter.cxx @@ -106,7 +106,7 @@ vtkAlignImageDataSetFilter::~vtkAlignImageDataSetFilter() } //----------------------------------------------------------------------------- -int vtkAlignImageDataSetFilter::FillInputPortInformation(int port, vtkInformation* info) +int vtkAlignImageDataSetFilter::FillInputPortInformation(int vtkNotUsed(port), vtkInformation* info) { info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPartitionedDataSetCollection"); info->Append(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPartitionedDataSet"); diff --git a/Interaction/Widgets/Testing/Cxx/TestLineWidget2b.cxx b/Interaction/Widgets/Testing/Cxx/TestLineWidget2b.cxx index 68086ecedaa6..bca30e104a9d 100644 --- a/Interaction/Widgets/Testing/Cxx/TestLineWidget2b.cxx +++ b/Interaction/Widgets/Testing/Cxx/TestLineWidget2b.cxx @@ -33,7 +33,7 @@ static const char* eventLog = "# StreamVersion 1.1\n" "MouseMoveEvent 572 111 0 0 0 0\n" "MouseMoveEvent 578 139 0 0 0 0\n"; -int TestLineWidget2b(int argc, char* argv[]) +int TestLineWidget2b(int vtkNotUsed(argc), char* vtkNotUsed(argv)[]) { // We want to test the handle behavior of widget representation // when the camera is far away from the origin -- GitLab From 0c857c3d396f5995ac0b6f6221e83eb912bbfccc Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Fri, 29 Apr 2022 16:44:14 -0400 Subject: [PATCH 0061/1015] gitlab-ci: perform clang-tidy in the test stage This allows the build stage to be used as a more reliable indicator of the viability of a merge request. --- .gitlab-ci.yml | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index e6e24906b294..7779d1e3efd0 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -457,6 +457,13 @@ fedora34-tidy:build: - .linux_qt_builder_tags - .cmake_tidy_artifacts - .run_manually + # Move it to the test stage so that the build stage can be required to be + # green. `clang-tidy` just takes too long to require for every MR prior to + # merging. See https://github.com/ejfitzgerald/clang-tidy-cache/issues/5 + # which should help performance immensely. + stage: test + needs: [] + dependencies: [] # clang-tidy really hampers compilation cache improvements, so it takes # longer. timeout: 150 minutes -- GitLab From 4d0f17c62660f791848f8faf700776110efc5aec Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Fri, 29 Apr 2022 16:47:09 -0400 Subject: [PATCH 0062/1015] vtkModuleWrapPython: make .pyi file building optional It seems there are numerous situations where this does not quite work out well. Allow it to be turned on instead. --- CMake/vtkModuleWrapPython.cmake | 96 ++++++++++++++++++--------------- 1 file changed, 52 insertions(+), 44 deletions(-) diff --git a/CMake/vtkModuleWrapPython.cmake b/CMake/vtkModuleWrapPython.cmake index 446b4db7caa9..fe7401f5154f 100644 --- a/CMake/vtkModuleWrapPython.cmake +++ b/CMake/vtkModuleWrapPython.cmake @@ -541,6 +541,7 @@ vtk_module_wrap_python( [BUILD_STATIC ] [INSTALL_HEADERS ] + [BUILD_PYI_FILES ] [DEPENDS ...] [UTILITY_TARGET ] @@ -576,6 +577,8 @@ vtk_module_wrap_python( the same function is provided, but it is a no-op. * `INSTALL_HEADERS` (Defaults to `ON`): If unset, CMake properties will not be installed. + * `BUILD_PYI_FILES` (Defaults to `OFF`): If set, `.pyi` files will be built + and installed for the generated modules. * `TARGET_SPECIFIC_COMPONENTS` (Defaults to `OFF`): If set, prepend the output target name to the install component (`-`). * `DEPENDS`: This is list of other Python modules targets i.e. targets @@ -613,7 +616,7 @@ vtk_module_wrap_python( function (vtk_module_wrap_python) cmake_parse_arguments(PARSE_ARGV 0 _vtk_python "" - "MODULE_DESTINATION;STATIC_MODULE_DESTINATION;LIBRARY_DESTINATION;PYTHON_PACKAGE;BUILD_STATIC;INSTALL_HEADERS;INSTALL_EXPORT;TARGET_SPECIFIC_COMPONENTS;TARGET;COMPONENT;WRAPPED_MODULES;CMAKE_DESTINATION;SOABI;USE_DEBUG_SUFFIX;UTILITY_TARGET" + "MODULE_DESTINATION;STATIC_MODULE_DESTINATION;LIBRARY_DESTINATION;PYTHON_PACKAGE;BUILD_STATIC;INSTALL_HEADERS;INSTALL_EXPORT;TARGET_SPECIFIC_COMPONENTS;TARGET;COMPONENT;WRAPPED_MODULES;CMAKE_DESTINATION;SOABI;USE_DEBUG_SUFFIX;UTILITY_TARGET;BUILD_PYI_FILES" "DEPENDS;MODULES") if (_vtk_python_UNPARSED_ARGUMENTS) @@ -645,6 +648,10 @@ function (vtk_module_wrap_python) set(_vtk_python_INSTALL_HEADERS ON) endif () + if (NOT DEFINED _vtk_python_BUILD_PYI_FILES) + set(_vtk_python_BUILD_PYI_FILES OFF) + endif () + if (NOT DEFINED _vtk_python_TARGET_SPECIFIC_COMPONENTS) set(_vtk_python_TARGET_SPECIFIC_COMPONENTS OFF) endif () @@ -994,52 +1001,53 @@ static void ${_vtk_python_TARGET_NAME}_load() {\n") # convert package "x.y" into "x/y" to access its contents on the filesystem string(REPLACE "." "/" _vtk_python_package_dir "${_vtk_python_PYTHON_PACKAGE}") - set(_vtk_python_pyi_files) - set(_vtk_python_modules) - set(_vtk_python_module_targets) - foreach (_vtk_python_module IN LISTS _vtk_python_all_wrapped_modules) - get_property(_vtk_python_library_name - TARGET "${_vtk_python_module}" - PROPERTY "INTERFACE_vtk_module_library_name") - list(APPEND _vtk_python_pyi_files - "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}/${_vtk_python_package_dir}/${_vtk_python_library_name}.pyi") - list(APPEND _vtk_python_modules "${_vtk_python_library_name}") - if (TARGET "${_vtk_python_library_name}Python") - list(APPEND _vtk_python_module_targets "${_vtk_python_library_name}Python") - endif () - endforeach () - - if (TARGET VTK::vtkpython) - set(_vtk_python_exe $) - else () - set(_vtk_python_exe "${Python3_EXECUTABLE}") - endif () - - # XXX(python2): Remove this conditional - if (NOT VTK_PYTHON_VERSION STREQUAL "2") - add_custom_command( - OUTPUT ${_vtk_python_pyi_files} - COMMAND "${_vtk_python_exe}" - -m vtkmodules.generate_pyi - -p "${_vtk_python_PYTHON_PACKAGE}" - -o "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}/${_vtk_python_package_dir}" - ${_vtk_python_modules} - WORKING_DIRECTORY - "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}" - DEPENDS ${_vtk_python_module_targets} - ${_vtk_python_static_importer_name} - "${_vtk_pyi_script}" - COMMENT "Creating .pyi files for ${_vtk_python_TARGET_NAME}") + if (_vtk_python_BUILD_PYI_FILES) + set(_vtk_python_pyi_files) + set(_vtk_python_modules) + set(_vtk_python_module_targets) + foreach (_vtk_python_module IN LISTS _vtk_python_all_wrapped_modules) + get_property(_vtk_python_library_name + TARGET "${_vtk_python_module}" + PROPERTY "INTERFACE_vtk_module_library_name") + list(APPEND _vtk_python_pyi_files + "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}/${_vtk_python_package_dir}/${_vtk_python_library_name}.pyi") + list(APPEND _vtk_python_modules "${_vtk_python_library_name}") + if (TARGET "${_vtk_python_library_name}Python") + list(APPEND _vtk_python_module_targets "${_vtk_python_library_name}Python") + endif () + endforeach () - install( - FILES ${_vtk_python_pyi_files} - DESTINATION "${_vtk_python_MODULE_DESTINATION}/${_vtk_python_package_dir}" - COMPONENT "${_vtk_python_component}") + if (TARGET VTK::vtkpython) + set(_vtk_python_exe $) + else () + set(_vtk_python_exe "${Python3_EXECUTABLE}") + endif () - add_custom_target("${_vtk_python_TARGET_NAME}_pyi" ALL - DEPENDS ${_vtk_python_pyi_files}) + # XXX(python2): Remove this conditional + if (NOT VTK_PYTHON_VERSION STREQUAL "2") + add_custom_command( + OUTPUT ${_vtk_python_pyi_files} + COMMAND "${_vtk_python_exe}" + -m vtkmodules.generate_pyi + -p "${_vtk_python_PYTHON_PACKAGE}" + -o "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}/${_vtk_python_package_dir}" + ${_vtk_python_modules} + WORKING_DIRECTORY + "${CMAKE_BINARY_DIR}/${_vtk_python_MODULE_DESTINATION}" + DEPENDS ${_vtk_python_module_targets} + ${_vtk_python_static_importer_name} + "${_vtk_pyi_script}" + COMMENT "Creating .pyi files for ${_vtk_python_TARGET_NAME}") + + install( + FILES ${_vtk_python_pyi_files} + DESTINATION "${_vtk_python_MODULE_DESTINATION}/${_vtk_python_package_dir}" + COMPONENT "${_vtk_python_component}") + + add_custom_target("${_vtk_python_TARGET_NAME}_pyi" ALL + DEPENDS ${_vtk_python_pyi_files}) + endif () endif () - endif () endfunction () -- GitLab From 657a1bde45139edff0ab9007df141815ece9afd8 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Fri, 29 Apr 2022 16:49:36 -0400 Subject: [PATCH 0063/1015] cmake: add an option to enable `.pyi` building --- CMakeLists.txt | 4 ++++ Documentation/dev/build.md | 2 ++ 2 files changed, 6 insertions(+) diff --git a/CMakeLists.txt b/CMakeLists.txt index ecf01d0186e0..f34bcc33ae78 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -424,6 +424,9 @@ if (VTK_WRAP_PYTHON) cmake_dependent_option(VTK_WINDOWS_PYTHON_DEBUGGABLE "Append `_d` to Python module names" OFF "WIN32;VTK_WRAP_PYTHON" OFF) mark_as_advanced(VTK_WINDOWS_PYTHON_DEBUGGABLE) + cmake_dependent_option(VTK_BUILD_PYI_FILES "Build `.pyi` files for VTK's Python modules" OFF + "VTK_WRAP_PYTHON" OFF) + mark_as_advanced(VTK_BUILD_PYI_FILES) if (APPLE AND VTK_WHEEL_BUILD) list(APPEND CMAKE_INSTALL_RPATH @@ -440,6 +443,7 @@ if (VTK_WRAP_PYTHON) MODULE_DESTINATION "${VTK_PYTHON_SITE_PACKAGES_SUFFIX}" CMAKE_DESTINATION "${vtk_cmake_destination}" INSTALL_HEADERS "${VTK_INSTALL_SDK}" + BUILD_PYI_FILES "${VTK_BUILD_PYI_FILES}" SOABI "${vtk_soabi}" USE_DEBUG_SUFFIX "${VTK_WINDOWS_PYTHON_DEBUGGABLE}" UTILITY_TARGET "VTK::vtkbuild" diff --git a/Documentation/dev/build.md b/Documentation/dev/build.md index 8c3823601724..044e3b6b5e4e 100644 --- a/Documentation/dev/build.md +++ b/Documentation/dev/build.md @@ -242,6 +242,8 @@ More advanced options: "${MPIEXEC_EXECUTABLE}" "${MPIEXEC_NUMPROC_FLAG}" "1" ${MPIEXEC_PREFLAGS} * `VTK_WINDOWS_PYTHON_DEBUGGABLE` (default `OFF`): Set to `ON` if using a debug build of Python. + * `VTK_BUILD_PYI_FILES` (default `OFF`): Set to `ON` to build `.pyi` type + hint files for VTK's Python interfaces. * `VTK_DLL_PATHS` (default `""` or `VTK_DLL_PATHS` from the environment): If set, these paths will be added via Python 3.8's `os.add_dll_directory` mechanism in order to find dependent DLLs when loading VTK's Python -- GitLab From cfd7de39b5fafdbc15a88318968faeb4ddb6f0f3 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Fri, 29 Apr 2022 16:49:45 -0400 Subject: [PATCH 0064/1015] ci: explicitly enable `.pyi` files in the wheels --- .gitlab/ci/configure_wheel.cmake | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.gitlab/ci/configure_wheel.cmake b/.gitlab/ci/configure_wheel.cmake index d8413a97663f..3362dcdc8e5c 100644 --- a/.gitlab/ci/configure_wheel.cmake +++ b/.gitlab/ci/configure_wheel.cmake @@ -33,6 +33,9 @@ set(VTK_ENABLE_REMOTE_MODULES OFF CACHE BOOL "") # Disable debug leaks in wheels. set(VTK_DEBUG_LEAKS OFF CACHE BOOL "") +# Enable `.pyi` files. +set(VTK_BUILD_PYI_FILES ON CACHE BOOL "") + # Disable modules we cannot build for wheels. set(VTK_GROUP_ENABLE_Qt NO CACHE STRING "") # Qt set(VTK_MODULE_ENABLE_VTK_CommonArchive NO CACHE STRING "") # libarchive -- GitLab From 4422b916b56c58a2a0edc5c189cc94d1157d03f2 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sat, 30 Apr 2022 00:01:38 -0400 Subject: [PATCH 0065/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 9ed449623b7e..1dd17a62d43d 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220429) +set(VTK_BUILD_VERSION 20220430) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 8c4e85f71f0ee902072220ec5486ef366831b1ef Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sun, 1 May 2022 00:01:20 -0400 Subject: [PATCH 0066/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 1dd17a62d43d..1732719300ad 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220430) +set(VTK_BUILD_VERSION 20220501) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From babf6de9715ed99e0069d18ff26fc1daba3f590e Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Mon, 2 May 2022 00:02:08 -0400 Subject: [PATCH 0067/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 1732719300ad..a056d5dc01cb 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220501) +set(VTK_BUILD_VERSION 20220502) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From b76fd64c91337a0075ea93a041dbe5a12dd8863a Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Mon, 2 May 2022 10:59:39 -0400 Subject: [PATCH 0068/1015] vtkFieldData range caching fixes When computing the range for components, the backend used by `vtkDataArray` computes the ranges for all components at once. This was not taken into account in `vtkFieldData::GetRange`, and memory could be written over by this process. The backend of `vtkDataArray::ComputeScalarRange` and `vtkDataArray::ComputeVectorRange` is now directly used by `vtkFieldData`. Since those methods are protected, `vtkDataArray` is now friend with `vtkFieldData`. --- Common/Core/vtkDataArray.h | 1 + Common/DataModel/vtkFieldData.cxx | 85 +++++++++++++++++-------------- Common/DataModel/vtkFieldData.h | 18 +++++-- 3 files changed, 62 insertions(+), 42 deletions(-) diff --git a/Common/Core/vtkDataArray.h b/Common/Core/vtkDataArray.h index 1732f7049e26..3376cd031ec2 100644 --- a/Common/Core/vtkDataArray.h +++ b/Common/Core/vtkDataArray.h @@ -548,6 +548,7 @@ public: protected: friend class vtkPoints; + friend class vtkFieldData; ///@{ /** diff --git a/Common/DataModel/vtkFieldData.cxx b/Common/DataModel/vtkFieldData.cxx index 8bad64aa5832..267a4763b410 100644 --- a/Common/DataModel/vtkFieldData.cxx +++ b/Common/DataModel/vtkFieldData.cxx @@ -32,37 +32,50 @@ vtkStandardExtendedNewMacro(vtkFieldData); namespace { -using CachedGhostRangeType = std::tuple>; +using CachedGhostRangeType = std::tuple>; //------------------------------------------------------------------------------ // This function is used to generalize the call to vtkDataArray::GetRange // and vtkDataArray::GetFiniteRange without having to copy / paste. bool GetRangeImpl(vtkFieldData* self, int index, double range[2], int comp, - std::vector>& ranges, - void (vtkDataArray::*GetRangeMethod)(double*, int, const unsigned char*, unsigned char)) + std::vector>& ranges, + bool (vtkDataArray::*ComputeVectorRangeMethod)(double*, const unsigned char*, unsigned char), + bool (vtkDataArray::*ComputeScalarRangeMethod)(double*, const unsigned char*, unsigned char)) { auto array = vtkArrayDownCast(self->GetAbstractArray(index)); - if (array && comp < array->GetNumberOfComponents()) + if (array && (comp < array->GetNumberOfComponents() || comp == -1)) { - int rangeComp = comp == -1 ? array->GetNumberOfComponents() : comp; - CachedGhostRangeType& cache = ranges[index][rangeComp]; + if (comp == -1 && array->GetNumberOfComponents() == 1) + { + comp = 0; + } + CachedGhostRangeType& cache = ranges[index][comp == -1 ? 0 : 1]; vtkMTimeType& arrayTime = std::get<0>(cache); vtkMTimeType& ghostTime = std::get<1>(cache); double* cachedRange = std::get<2>(cache).data(); vtkUnsignedCharArray* ghosts = self->GetGhostArray(); + bool retVal = true; if (arrayTime != array->GetMTime() || ghostTime != (ghosts ? ghosts->GetMTime() : 0)) { - (array->*GetRangeMethod)(cachedRange, comp, ghosts ? ghosts->GetPointer(0) : nullptr, - ghosts ? self->GetGhostsToSkip() : 0); + if (comp < 0) + { + retVal = (array->*ComputeVectorRangeMethod)(cachedRange, + ghosts ? ghosts->GetPointer(0) : nullptr, ghosts ? self->GetGhostsToSkip() : 0); + } + else + { + retVal = (array->*ComputeScalarRangeMethod)(cachedRange, + ghosts ? ghosts->GetPointer(0) : nullptr, ghosts ? self->GetGhostsToSkip() : 0); + } arrayTime = array->GetMTime(); ghostTime = ghosts ? ghosts->GetMTime() : 0; } - range[0] = cachedRange[0]; - range[1] = cachedRange[1]; - return true; + range[0] = cachedRange[std::max(0, comp * 2)]; + range[1] = cachedRange[std::max(1, comp * 2 + 1)]; + return retVal; } constexpr double NaN = std::numeric_limits::quiet_NaN(); @@ -383,8 +396,6 @@ void vtkFieldData::AllocateArrays(int num) { if (this->Data[i]) { - this->Ranges[i].clear(); - this->FiniteRanges[i].clear(); this->Data[i]->UnRegister(this); } } @@ -453,27 +464,27 @@ void vtkFieldData::SetArray(int i, vtkAbstractArray* data) this->Data[i] = data; if (this->Data[i] != nullptr) { + // range[0] -> cached range for comp == -1 + // range[1] -> cached range for comp in [0, number of components - 1] + // std::get<0> -> cached array MTime + // std::get<1> -> cached ghost array MTime + // std::get<2> -> cached range buffer auto& finiteRange = this->FiniteRanges[i]; - finiteRange.resize(data->GetNumberOfComponents() + 1); - for (int j = 0; j < static_cast(finiteRange.size()); ++j) - { - std::get<0>(finiteRange[j]) = 0; - std::get<1>(finiteRange[j]) = 0; - } + std::get<0>(finiteRange[0]) = 0; + std::get<1>(finiteRange[0]) = 0; + std::get<2>(finiteRange[0]).resize(2); + std::get<0>(finiteRange[1]) = 0; + std::get<1>(finiteRange[1]) = 0; + std::get<2>(finiteRange[1]).resize(2 * data->GetNumberOfComponents()); auto& range = this->Ranges[i]; - range.resize(data->GetNumberOfComponents() + 1); - for (int j = 0; j < static_cast(range.size()); ++j) - { - std::get<0>(range[j]) = 0; - std::get<1>(range[j]) = 0; - } + std::get<0>(range[0]) = 0; + std::get<1>(range[0]) = 0; + std::get<2>(range[0]).resize(2); + std::get<0>(range[1]) = 0; + std::get<1>(range[1]) = 0; + std::get<2>(range[1]).resize(2 * data->GetNumberOfComponents()); this->Data[i]->Register(this); } - else - { - this->FiniteRanges[i].clear(); - this->Ranges[i].clear(); - } this->Modified(); } } @@ -664,9 +675,8 @@ bool vtkFieldData::GetRange(const char* name, double range[2], int comp) //------------------------------------------------------------------------------ bool vtkFieldData::GetRange(int index, double range[2], int comp) { - void (vtkDataArray::*f)(double*, int, const unsigned char*, unsigned char) = - &vtkDataArray::GetRange; - return ::GetRangeImpl(this, index, range, comp, this->Ranges, f); + return ::GetRangeImpl(this, index, range, comp, this->Ranges, &vtkDataArray::ComputeVectorRange, + &vtkDataArray::ComputeScalarRange); } //------------------------------------------------------------------------------ @@ -680,9 +690,8 @@ bool vtkFieldData::GetFiniteRange(const char* name, double range[2], int comp) //------------------------------------------------------------------------------ bool vtkFieldData::GetFiniteRange(int index, double range[2], int comp) { - void (vtkDataArray::*f)(double*, int, const unsigned char*, unsigned char) = - &vtkDataArray::GetFiniteRange; - return ::GetRangeImpl(this, index, range, comp, this->FiniteRanges, f); + return ::GetRangeImpl(this, index, range, comp, this->FiniteRanges, + &vtkDataArray::ComputeFiniteVectorRange, &vtkDataArray::ComputeFiniteScalarRange); } //------------------------------------------------------------------------------ @@ -713,8 +722,8 @@ void vtkFieldData::RemoveArray(int index) this->Ranges[i] = std::move(this->Ranges[i + 1]); this->FiniteRanges[i] = std::move(this->FiniteRanges[i + 1]); } - this->Ranges[this->NumberOfActiveArrays] = std::vector(); - this->FiniteRanges[this->NumberOfActiveArrays] = std::vector(); + this->Ranges[this->NumberOfActiveArrays] = std::array(); + this->FiniteRanges[this->NumberOfActiveArrays] = std::array(); this->Data[this->NumberOfActiveArrays] = nullptr; this->Modified(); } diff --git a/Common/DataModel/vtkFieldData.h b/Common/DataModel/vtkFieldData.h index 60c7722490af..1df7cd19e425 100644 --- a/Common/DataModel/vtkFieldData.h +++ b/Common/DataModel/vtkFieldData.h @@ -450,17 +450,27 @@ protected: int DoCopyAllOff; /* - * This tuple holds: [array time stamp, ghost array time stamp, cached range]. + * This tuple holds: [array time stamp, ghost array time stamp, cached ranges]. * Those time stamps are used to decide whether the cached range should be recomputed or not. * when requesting the range of an array. * * When there is no ghost array, the ghost array time stamp is defined as equal to 0. */ - using CachedGhostRangeType = std::tuple>; + using CachedGhostRangeType = std::tuple>; unsigned char GhostsToSkip; vtkUnsignedCharArray* GhostArray; - std::vector> Ranges; - std::vector> FiniteRanges; + + ///@{ + /** + * `Ranges` and `FiniteRanges` store cached ranges for arrays stored in this field data. + * Given the array at index `idx`, 2 ranges are stored: the magnitude range at `Ranges[idx][0]`, + * and all the component ranges at `Ranges[idx][1]`. The ranges are stored in the third + * component of the tuple `CachedGhostRangeType`. For the component ranges, they are stored + * in an array of size 2 times the number of components, storing `[min0, max0, ..., minn, maxn]`. + */ + std::vector> Ranges; + std::vector> FiniteRanges; + ///@} private: vtkFieldData(const vtkFieldData&) = delete; -- GitLab From 52d940043ff53cab4a1d48a2f17dc2f2f5b5b89a Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 27 Apr 2022 11:46:02 -0400 Subject: [PATCH 0069/1015] CellLocators: Define efficiently InsideCellBounds Also, multithread the caching of bounds (when enabled). --- Charts/Core/vtkAxisExtended.h | 2 +- Common/DataModel/vtkAbstractCellLocator.cxx | 50 +++++++++++++++++---- Common/DataModel/vtkAbstractCellLocator.h | 4 +- Common/DataModel/vtkCellLocator.cxx | 26 +++-------- Common/DataModel/vtkStaticCellLocator.cxx | 30 +++++++++---- Common/DataModel/vtkStaticCellLocator.h | 5 +++ Filters/FlowPaths/vtkModifiedBSPTree.cxx | 16 +++---- Filters/General/vtkCellTreeLocator.cxx | 11 ++--- Filters/General/vtkCellTreeLocator.h | 2 +- 9 files changed, 87 insertions(+), 59 deletions(-) diff --git a/Charts/Core/vtkAxisExtended.h b/Charts/Core/vtkAxisExtended.h index 63979a2dc4ad..067f2e26cacb 100644 --- a/Charts/Core/vtkAxisExtended.h +++ b/Charts/Core/vtkAxisExtended.h @@ -1,7 +1,7 @@ /*========================================================================= Program: Visualization Toolkit - Module: vtkCellLocator.h + Module: vtkAxisExtended.h Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen All rights reserved. diff --git a/Common/DataModel/vtkAbstractCellLocator.cxx b/Common/DataModel/vtkAbstractCellLocator.cxx index 7edb3054008e..0ec9a12a29ce 100644 --- a/Common/DataModel/vtkAbstractCellLocator.cxx +++ b/Common/DataModel/vtkAbstractCellLocator.cxx @@ -25,6 +25,7 @@ #include "vtkObjectFactory.h" #include "vtkPoints.h" #include "vtkPolyData.h" +#include "vtkSMPTools.h" #include "vtkUnstructuredGrid.h" //------------------------------------------------------------------------------ @@ -40,27 +41,41 @@ vtkAbstractCellLocator::vtkAbstractCellLocator() this->LazyEvaluation = 0; this->GenericCell = vtkGenericCell::New(); } + //------------------------------------------------------------------------------ vtkAbstractCellLocator::~vtkAbstractCellLocator() { this->GenericCell->Delete(); } + //------------------------------------------------------------------------------ bool vtkAbstractCellLocator::StoreCellBounds() { if (this->CellBounds) + { return false; + } if (!this->DataSet) + { return false; + } // Allocate space for cell bounds storage, then fill vtkIdType numCells = this->DataSet->GetNumberOfCells(); this->CellBounds = new double[numCells][6]; - for (vtkIdType j = 0; j < numCells; j++) - { - this->DataSet->GetCellBounds(j, CellBounds[j]); - } + + // This is done to cause non-thread safe initialization to occur due to + // side effects from GetCellBounds(). + this->DataSet->GetCellBounds(0, this->CellBounds[0]); + + vtkSMPTools::For(1, numCells, [&](vtkIdType begin, vtkIdType end) { + for (vtkIdType cellId = begin; cellId < end; cellId++) + { + this->DataSet->GetCellBounds(cellId, this->CellBounds[cellId]); + } + }); return true; } + //------------------------------------------------------------------------------ void vtkAbstractCellLocator::FreeCellBounds() { @@ -94,6 +109,7 @@ int vtkAbstractCellLocator::IntersectWithLine(const double p1[3], const double p vtkIdType cellId = -1; return this->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId, cellId); } + //------------------------------------------------------------------------------ int vtkAbstractCellLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId) @@ -102,6 +118,7 @@ int vtkAbstractCellLocator::IntersectWithLine(const double p1[3], const double p returnVal = this->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId, cellId, this->GenericCell); return returnVal; } + //------------------------------------------------------------------------------ int vtkAbstractCellLocator::IntersectWithLine(const double vtkNotUsed(p1)[3], const double vtkNotUsed(p2)[3], double vtkNotUsed(tol), double& vtkNotUsed(t), @@ -112,6 +129,7 @@ int vtkAbstractCellLocator::IntersectWithLine(const double vtkNotUsed(p1)[3], << " does not yet support IntersectWithLine"); return 0; } + //------------------------------------------------------------------------------ int vtkAbstractCellLocator::IntersectWithLine(const double vtkNotUsed(p1)[3], const double vtkNotUsed(p2)[3], vtkPoints* vtkNotUsed(points), vtkIdList* vtkNotUsed(cellIds)) @@ -120,12 +138,14 @@ int vtkAbstractCellLocator::IntersectWithLine(const double vtkNotUsed(p1)[3], << " does not yet support this IntersectWithLine interface"); return 0; } + //------------------------------------------------------------------------------ void vtkAbstractCellLocator::FindClosestPoint( const double x[3], double closestPoint[3], vtkIdType& cellId, int& subId, double& dist2) { this->FindClosestPoint(x, closestPoint, this->GenericCell, cellId, subId, dist2); } + //------------------------------------------------------------------------------ void vtkAbstractCellLocator::FindClosestPoint(const double vtkNotUsed(x)[3], double vtkNotUsed(closestPoint)[3], vtkGenericCell* vtkNotUsed(cell), @@ -134,6 +154,7 @@ void vtkAbstractCellLocator::FindClosestPoint(const double vtkNotUsed(x)[3], vtkErrorMacro(<< "The locator class - " << this->GetClassName() << " does not yet support FindClosestPoint"); } + //------------------------------------------------------------------------------ vtkIdType vtkAbstractCellLocator::FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2) @@ -142,6 +163,7 @@ vtkIdType vtkAbstractCellLocator::FindClosestPointWithinRadius(double x[3], doub return this->FindClosestPointWithinRadius( x, radius, closestPoint, cell, cellId, subId, dist2, inside); } + //------------------------------------------------------------------------------ vtkIdType vtkAbstractCellLocator::FindClosestPointWithinRadius( double x[3], double radius, double closestPoint[3], vtkIdType& cellId, int& subId, double& dist2) @@ -150,6 +172,7 @@ vtkIdType vtkAbstractCellLocator::FindClosestPointWithinRadius( return this->FindClosestPointWithinRadius( x, radius, closestPoint, this->GenericCell, cellId, subId, dist2, inside); } + //------------------------------------------------------------------------------ vtkIdType vtkAbstractCellLocator::FindClosestPointWithinRadius(double vtkNotUsed(x)[3], double vtkNotUsed(radius), double vtkNotUsed(closestPoint)[3], vtkGenericCell* vtkNotUsed(cell), @@ -160,6 +183,7 @@ vtkIdType vtkAbstractCellLocator::FindClosestPointWithinRadius(double vtkNotUsed << " does not yet support FindClosestPoint"); return 0; } + //------------------------------------------------------------------------------ void vtkAbstractCellLocator::FindCellsWithinBounds( double* vtkNotUsed(bbox), vtkIdList* vtkNotUsed(cells)) @@ -167,6 +191,7 @@ void vtkAbstractCellLocator::FindCellsWithinBounds( vtkErrorMacro(<< "The locator class - " << this->GetClassName() << " does not yet support FindCellsWithinBounds"); } + //------------------------------------------------------------------------------ void vtkAbstractCellLocator::FindCellsAlongLine(const double vtkNotUsed(p1)[3], const double vtkNotUsed(p2)[3], double vtkNotUsed(tolerance), vtkIdList* vtkNotUsed(cells)) @@ -174,6 +199,7 @@ void vtkAbstractCellLocator::FindCellsAlongLine(const double vtkNotUsed(p1)[3], vtkErrorMacro(<< "The locator " << this->GetClassName() << " does not yet support FindCellsAlongLine"); } + //------------------------------------------------------------------------------ vtkIdType vtkAbstractCellLocator::FindCell(double x[3]) { @@ -181,6 +207,7 @@ vtkIdType vtkAbstractCellLocator::FindCell(double x[3]) double dist2 = 0, pcoords[3]; return this->FindCell(x, dist2, this->GenericCell, pcoords, this->Weights.data()); } + //------------------------------------------------------------------------------ vtkIdType vtkAbstractCellLocator::FindCell( double x[3], double tol2, vtkGenericCell* GenCell, double pcoords[3], double* weights) @@ -188,6 +215,7 @@ vtkIdType vtkAbstractCellLocator::FindCell( int subId; return this->FindCell(x, tol2, GenCell, subId, pcoords, weights); } + //------------------------------------------------------------------------------ vtkIdType vtkAbstractCellLocator::FindCell( double x[3], double tol2, vtkGenericCell* GenCell, int& subId, double pcoords[3], double* weights) @@ -208,17 +236,22 @@ vtkIdType vtkAbstractCellLocator::FindCell( } return returnVal; } + //------------------------------------------------------------------------------ bool vtkAbstractCellLocator::InsideCellBounds(double x[3], vtkIdType cell_ID) { - double cellBounds[6], delta[3] = { 0.0, 0.0, 0.0 }; - if (this->DataSet) + if (this->CacheCellBounds) { + return vtkAbstractCellLocator::IsInBounds(this->CellBounds[cell_ID], x); + } + else + { + double cellBounds[6]; this->DataSet->GetCellBounds(cell_ID, cellBounds); - return vtkMath::PointIsWithinBounds(x, cellBounds, delta) != 0; + return vtkAbstractCellLocator::IsInBounds(cellBounds, x); } - return false; } + //------------------------------------------------------------------------------ void vtkAbstractCellLocator::PrintSelf(ostream& os, vtkIndent indent) { @@ -229,4 +262,3 @@ void vtkAbstractCellLocator::PrintSelf(ostream& os, vtkIndent indent) os << indent << "UseExistingSearchStructure: " << this->UseExistingSearchStructure << "\n"; os << indent << "LazyEvaluation: " << this->LazyEvaluation << "\n"; } -//------------------------------------------------------------------------------ diff --git a/Common/DataModel/vtkAbstractCellLocator.h b/Common/DataModel/vtkAbstractCellLocator.h index 13cd29e073c4..21d3c60a4dda 100644 --- a/Common/DataModel/vtkAbstractCellLocator.h +++ b/Common/DataModel/vtkAbstractCellLocator.h @@ -69,7 +69,7 @@ public: * Boolean controls whether the bounds of each cell are computed only * once and then saved. Should be 10 to 20% faster if repeatedly * calling any of the Intersect/Find routines and the extra memory - * won't cause disk caching (24 extra bytes per cell are required to + * won't cause disk caching (48 extra bytes per cell are required to * save the bounds). */ vtkSetMacro(CacheCellBounds, vtkTypeBool); @@ -259,7 +259,7 @@ public: /** * Quickly test if a point is inside the bounds of a particular cell. * Some locators cache cell bounds and this function can make use - * of fast access to the data. + * of fast access to the data. This function should be used ONLY after the locator is built. */ virtual bool InsideCellBounds(double x[3], vtkIdType cell_ID); diff --git a/Common/DataModel/vtkCellLocator.cxx b/Common/DataModel/vtkCellLocator.cxx index 7320d8e163e2..e043decbd01b 100644 --- a/Common/DataModel/vtkCellLocator.cxx +++ b/Common/DataModel/vtkCellLocator.cxx @@ -1221,7 +1221,6 @@ void vtkCellLocator::BuildLocatorInternal() // Size the root cell. Initialize cell data structure, compute // level and divisions. - // const double* bounds = this->DataSet->GetBounds(); length = this->DataSet->GetLength(); for (i = 0; i < 3; i++) @@ -1668,7 +1667,7 @@ vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGene return -1; } // check if x outside of bounds - if (!vtkAbstractCellLocator::IsInBounds(this->DataSet->GetBounds(), x)) + if (!vtkAbstractCellLocator::IsInBounds(this->Bounds, x)) { return -1; } @@ -1704,27 +1703,12 @@ vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGene vtkIdType cellId = cellIds->GetId(j); // check whether we could be close enough to the cell by // testing the cell bounds - if (this->CacheCellBounds) - { - if (this->InsideCellBounds(x, cellId)) - { - this->DataSet->GetCell(cellId, cell); - if (cell->EvaluatePosition(x, nullptr, subId, pcoords, dist2, weights) == 1) - { - return cellId; - } - } - } - else + if (this->InsideCellBounds(x, cellId)) { - this->DataSet->GetCellBounds(cellId, cellBounds); - if (vtkCellLocator::IsInBounds(cellBounds, x)) + this->DataSet->GetCell(cellId, cell); + if (cell->EvaluatePosition(x, nullptr, subId, pcoords, dist2, weights) == 1) { - this->DataSet->GetCell(cellId, cell); - if (cell->EvaluatePosition(x, nullptr, subId, pcoords, dist2, weights) == 1) - { - return cellId; - } + return cellId; } } } diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 253919514109..213679629687 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -240,7 +240,7 @@ struct vtkCellProcessor { vtkCellBinner* Binner; vtkDataSet* DataSet; - double DataSetBounds[6]; + double* Bounds; double* CellBounds; vtkIdType* Counts; vtkIdType NumFragments; @@ -255,7 +255,7 @@ struct vtkCellProcessor : Binner(cb) { this->DataSet = cb->DataSet; - this->DataSet->GetBounds(this->DataSetBounds); + this->Bounds = cb->Bounds; this->CellBounds = cb->CellBounds; this->Counts = cb->Counts; this->NumCells = cb->NumCells; @@ -282,6 +282,7 @@ struct vtkCellProcessor const double o[3], const double n[3], double tolerance, vtkIdList* cells) = 0; virtual int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) = 0; + virtual bool InsideCellBounds(const double x[3], vtkIdType cellId) = 0; virtual vtkIdType FindClosestPointWithinRadius(const double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) = 0; @@ -353,6 +354,7 @@ struct CellProcessor : public vtkCellProcessor const double o[3], const double n[3], double tolerance, vtkIdList* cells) override; int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; + bool InsideCellBounds(const double x[3], vtkIdType cellId) override; vtkIdType FindClosestPointWithinRadius(const double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; int IsEmpty(vtkIdType binId) override @@ -479,7 +481,7 @@ vtkIdType CellProcessor::FindCell( const double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { // check if pos outside of bounds - if (!CellProcessor::IsInBounds(this->DataSetBounds, pos)) + if (!CellProcessor::IsInBounds(this->Bounds, pos)) { return -1; } @@ -496,17 +498,14 @@ vtkIdType CellProcessor::FindCell( else { const CellFragments* cellIds = this->GetIds(binId); - double tol = this->Binner->binTol; - double dist2, *bounds; + double dist2; vtkIdType cellId; for (T j = 0; j < numIds; j++) { cellId = cellIds[j].CellId; - bounds = this->CellBounds + 6 * cellId; - // IsInBounds is identical to vtkMath::PointIsWithinBounds without the invalid values check - if (CellProcessor::IsInBounds(bounds, pos, tol)) + if (this->InsideCellBounds(pos, cellId)) { this->DataSet->GetCell(cellId, cell); if (cell->EvaluatePosition(pos, nullptr, subId, pcoords, dist2, weights) == 1) @@ -1216,7 +1215,14 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], return 0; } - +//------------------------------------------------------------------------------ +template +bool CellProcessor::InsideCellBounds(const double x[3], vtkIdType cellId) +{ + // In the future we should consider removing the (bin) tolerance + // because all the other locators have a check without tolerance + return CellProcessor::IsInBounds(this->CellBounds + 6 * cellId, x, this->Binner->binTol); +} } // anonymous namespace //------------------------------------------------------------------------------ @@ -1355,6 +1361,12 @@ int vtkStaticCellLocator::IntersectWithLine(const double p1[3], const double p2[ return this->Processor->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId, cellId, cell); } +//------------------------------------------------------------------------------ +bool vtkStaticCellLocator::InsideCellBounds(double x[3], vtkIdType cellId) +{ + return this->Processor->InsideCellBounds(x, cellId); +} + //------------------------------------------------------------------------------ void vtkStaticCellLocator::BuildLocator() { diff --git a/Common/DataModel/vtkStaticCellLocator.h b/Common/DataModel/vtkStaticCellLocator.h index f49e298f65fb..732d0f8a291c 100644 --- a/Common/DataModel/vtkStaticCellLocator.h +++ b/Common/DataModel/vtkStaticCellLocator.h @@ -188,6 +188,11 @@ public: return this->Superclass::IntersectWithLine(p1, p2, points, cellIds); } + /** + * Quickly test if a point is inside the bounds of a particular cell. + */ + bool InsideCellBounds(double x[3], vtkIdType cellId) override; + ///@{ /** * Satisfy vtkLocator abstract interface. diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.cxx b/Filters/FlowPaths/vtkModifiedBSPTree.cxx index 7704b94ce281..646016429c3d 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.cxx +++ b/Filters/FlowPaths/vtkModifiedBSPTree.cxx @@ -105,8 +105,8 @@ public: { for (int i = 0; i < 3; i++) { - delete[](Mins[i]); - delete[](Maxs[i]); + delete[](this->Mins[i]); + delete[](this->Maxs[i]); } global_list_count -= 1; } @@ -169,7 +169,8 @@ void vtkModifiedBSPTree::ForceBuildLocator() { // // don't rebuild if build time is newer than modified and dataset modified time - if ((this->mRoot) && (this->BuildTime > this->MTime) && (this->BuildTime > DataSet->GetMTime())) + if ((this->mRoot) && (this->BuildTime > this->MTime) && + (this->BuildTime > this->DataSet->GetMTime())) { return; } @@ -192,7 +193,6 @@ void vtkModifiedBSPTree::BuildLocatorInternal() vtkDebugMacro(<< "No Cells to divide"); numCells = 0; } - this->DataSet->ComputeBounds(); vtkDebugMacro(<< "Creating BSPTree for " << numCells << " cells"); // @@ -261,8 +261,8 @@ void vtkModifiedBSPTree::BuildLocatorInternal() void vtkModifiedBSPTree::Subdivide(BSPNode* node, Sorted_cell_extents_Lists* lists, vtkDataSet* dataset, vtkIdType nCells, int depth, int maxlevel, vtkIdType maxCells, int& MaxDepth) { - // // We've got lists sorted on the axes, so we can easily get BBox + // NOTE: this->mRoot->Bounds is set here node->setMin(lists->Mins[0][0].min, lists->Mins[1][0].min, lists->Mins[2][0].min); node->setMax(lists->Maxs[0][0].max, lists->Maxs[1][0].max, lists->Maxs[2][0].max); // Update depth info @@ -1022,7 +1022,7 @@ vtkIdType vtkModifiedBSPTree::FindCell( this->BuildLocatorIfNeeded(); // // check if x outside of bounds - if (!vtkAbstractCellLocator::IsInBounds(this->DataSet->GetBounds(), x)) + if (!vtkAbstractCellLocator::IsInBounds(this->mRoot->Bounds, x)) { return -1; } @@ -1067,9 +1067,7 @@ vtkIdType vtkModifiedBSPTree::FindCell( //------------------------------------------------------------------------------ bool vtkModifiedBSPTree::InsideCellBounds(double x[3], vtkIdType cell_ID) { - // - this->BuildLocatorIfNeeded(); - // + // vtkModifiedBSPTree stores cell bounds always return vtkAbstractCellLocator::IsInBounds(this->CellBounds[cell_ID], x); } //------------------------------------------------------------------------------ diff --git a/Filters/General/vtkCellTreeLocator.cxx b/Filters/General/vtkCellTreeLocator.cxx index 3fd0dd4c1e2c..8301f15eee33 100644 --- a/Filters/General/vtkCellTreeLocator.cxx +++ b/Filters/General/vtkCellTreeLocator.cxx @@ -567,7 +567,8 @@ void vtkCellTreeLocator::ForceBuildLocator() { // // don't rebuild if build time is newer than modified and dataset modified time - if ((this->Tree) && (this->BuildTime > this->MTime) && (this->BuildTime > DataSet->GetMTime())) + if ((this->Tree) && (this->BuildTime > this->MTime) && + (this->BuildTime > this->DataSet->GetMTime())) { return; } @@ -630,7 +631,7 @@ vtkIdType vtkCellTreeLocator::FindCell( return -1; } // check if pos outside of bounds - if (!vtkAbstractCellLocator::IsInBounds(this->DataSet->GetBounds(), pos)) + if (!vtkAbstractCellLocator::IsInBounds(this->Tree->DataBBox, pos)) { return -1; } @@ -1386,12 +1387,8 @@ void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) ns.push(nodeBoxLevel(n2, boxLevel(rbox, lev + 1))); } } - // - // - // // For each node, add the bbox to our polydata - int s = (int)bl.size(); - for (int i = 0; i < s; i++) + for (auto i = 0; i < bl.size(); i++) { double bounds[6]; bl[i].first.GetBounds(bounds); diff --git a/Filters/General/vtkCellTreeLocator.h b/Filters/General/vtkCellTreeLocator.h index dac10fb30323..0ef627939e44 100644 --- a/Filters/General/vtkCellTreeLocator.h +++ b/Filters/General/vtkCellTreeLocator.h @@ -16,7 +16,7 @@ * @class vtkCellTreeLocator * @brief This class implements the data structures, construction * algorithms for fast cell location presented in "Fast, Memory-Efficient Cell - * location in Unstructured Grids for Visualization" by Christop Garth and Kenneth + * location in Unstructured Grids for Visualization" by Christoph Garth and Kenneth * I. Joy in VisWeek, 2011. * * -- GitLab From a7290c1643addbdac8b53d8a4b3a20f4ed4f656c Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 27 Apr 2022 13:41:00 -0400 Subject: [PATCH 0070/1015] vtkCellTreeLocator: Fix FindCell With lazy evaluation on --- Filters/General/vtkCellTreeLocator.cxx | 13 ++++--------- 1 file changed, 4 insertions(+), 9 deletions(-) diff --git a/Filters/General/vtkCellTreeLocator.cxx b/Filters/General/vtkCellTreeLocator.cxx index 8301f15eee33..172a5d5751b9 100644 --- a/Filters/General/vtkCellTreeLocator.cxx +++ b/Filters/General/vtkCellTreeLocator.cxx @@ -600,8 +600,8 @@ void vtkCellTreeLocator::BuildLocatorInternal() this->Tree = new vtkCellTree; vtkCellTreeBuilder builder; builder.m_leafsize = this->NumberOfCellsPerNode; - builder.m_buckets = NumberOfBuckets; - builder.Build(this, *(Tree), this->DataSet); + builder.m_buckets = this->NumberOfBuckets; + builder.Build(this, *(this->Tree), this->DataSet); this->BuildTime.Modified(); } @@ -626,10 +626,7 @@ vtkIdType vtkCellTreeLocator::FindCell( vtkIdType vtkCellTreeLocator::FindCell( double pos[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { - if (this->Tree == nullptr) - { - return -1; - } + this->BuildLocatorIfNeeded(); // check if pos outside of bounds if (!vtkAbstractCellLocator::IsInBounds(this->Tree->DataBBox, pos)) { @@ -703,15 +700,13 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellIds) { - // + this->BuildLocatorIfNeeded(); vtkCellTreeNode *node, *nearNode, *farNode; double ctmin, ctmax, tmin, tmax, _tmin, _tmax, tDist; double ray_vec[3] = { p2[0] - p1[0], p2[1] - p1[1], p2[2] - p1[2] }; double cellBounds[6]; - this->BuildLocatorIfNeeded(); - // Does ray pass through root BBox tmin = 0; tmax = 1; -- GitLab From a003393fa4c30771b98439fb37cf3abc87be956c Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 27 Apr 2022 19:03:02 -0400 Subject: [PATCH 0071/1015] vtkCellTreeLocator: Improve FindCell As seen in vtkStaticCellLocator, it's beneficial to first check the bounds, and if inside, extract the cell and evaluate position. With this change at a specific particletracing experiment Find 1) Before changes took 10.213 sec 2) After changes w/o CacheCellBounds took 8.020 sec. 3) After changes with CacheCellBounds took 6.333 sec. The speedup for 2) is 10.213 sec / 8.020 sec = 1.273 times better. The speedup for 3) is 10.213 sec / 6.333 sec = 1.612 times better. --- Filters/General/vtkCellTreeLocator.cxx | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/Filters/General/vtkCellTreeLocator.cxx b/Filters/General/vtkCellTreeLocator.cxx index 172a5d5751b9..853e5d23474b 100644 --- a/Filters/General/vtkCellTreeLocator.cxx +++ b/Filters/General/vtkCellTreeLocator.cxx @@ -643,10 +643,13 @@ vtkIdType vtkCellTreeLocator::FindCell( for (; begin != end; ++begin) { - this->DataSet->GetCell(*begin, cell); - if (cell->EvaluatePosition(pos, nullptr, subId, pcoords, dist2, weights) == 1) + if (this->InsideCellBounds(pos, *begin)) { - return *begin; + this->DataSet->GetCell(*begin, cell); + if (cell->EvaluatePosition(pos, nullptr, subId, pcoords, dist2, weights) == 1) + { + return *begin; + } } } } -- GitLab From 4a29e6f7dd9acb460644fe487d2e80aac65f7be9 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 27 Apr 2022 19:15:23 -0400 Subject: [PATCH 0072/1015] vtkCellTreeLocator: Move to Common/DataModel Move it in the same place as vtkCellLocator/vtkStaticCellLocator --- Common/DataModel/CMakeLists.txt | 1 + Common/DataModel/Testing/Cxx/CMakeLists.txt | 1 + .../DataModel}/Testing/Cxx/CellTreeLocator.cxx | 0 .../DataModel}/vtkCellTreeLocator.cxx | 0 .../General => Common/DataModel}/vtkCellTreeLocator.h | 10 +++++----- Filters/General/CMakeLists.txt | 1 - Filters/General/Testing/Cxx/CMakeLists.txt | 1 - 7 files changed, 7 insertions(+), 7 deletions(-) rename {Filters/General => Common/DataModel}/Testing/Cxx/CellTreeLocator.cxx (100%) rename {Filters/General => Common/DataModel}/vtkCellTreeLocator.cxx (100%) rename {Filters/General => Common/DataModel}/vtkCellTreeLocator.h (96%) diff --git a/Common/DataModel/CMakeLists.txt b/Common/DataModel/CMakeLists.txt index ef1152aa9c8a..3ccf3084f08c 100644 --- a/Common/DataModel/CMakeLists.txt +++ b/Common/DataModel/CMakeLists.txt @@ -37,6 +37,7 @@ set(classes vtkCellLinks vtkCellLocator vtkCellLocatorStrategy + vtkCellTreeLocator vtkCellTypes vtkClosestNPointsStrategy vtkClosestPointStrategy diff --git a/Common/DataModel/Testing/Cxx/CMakeLists.txt b/Common/DataModel/Testing/Cxx/CMakeLists.txt index b67f29a75ddf..e747ea382dae 100644 --- a/Common/DataModel/Testing/Cxx/CMakeLists.txt +++ b/Common/DataModel/Testing/Cxx/CMakeLists.txt @@ -10,6 +10,7 @@ vtk_add_test_cxx(vtkCommonDataModelCxxTests tests ${memkind_tests} LagrangeHexahedron.cxx BezierInterpolation.cxx + CellTreeLocator.cxx TestBezier.cxx TestAngularPeriodicDataArray.cxx TestArrayListTemplate.cxx diff --git a/Filters/General/Testing/Cxx/CellTreeLocator.cxx b/Common/DataModel/Testing/Cxx/CellTreeLocator.cxx similarity index 100% rename from Filters/General/Testing/Cxx/CellTreeLocator.cxx rename to Common/DataModel/Testing/Cxx/CellTreeLocator.cxx diff --git a/Filters/General/vtkCellTreeLocator.cxx b/Common/DataModel/vtkCellTreeLocator.cxx similarity index 100% rename from Filters/General/vtkCellTreeLocator.cxx rename to Common/DataModel/vtkCellTreeLocator.cxx diff --git a/Filters/General/vtkCellTreeLocator.h b/Common/DataModel/vtkCellTreeLocator.h similarity index 96% rename from Filters/General/vtkCellTreeLocator.h rename to Common/DataModel/vtkCellTreeLocator.h index 0ef627939e44..05cb6860d947 100644 --- a/Filters/General/vtkCellTreeLocator.h +++ b/Common/DataModel/vtkCellTreeLocator.h @@ -38,14 +38,14 @@ #define vtkCellTreeLocator_h #include "vtkAbstractCellLocator.h" -#include "vtkFiltersGeneralModule.h" // For export macro -#include // Needed for internal class +#include "vtkCommonDataModelModule.h" // For export macro +#include // Needed for internal class class vtkCellPointTraversal; class vtkIdTypeArray; class vtkCellArray; -class VTKFILTERSGENERAL_EXPORT vtkCellTreeLocator : public vtkAbstractCellLocator +class VTKCOMMONDATAMODEL_EXPORT vtkCellTreeLocator : public vtkAbstractCellLocator { public: class vtkCellTree; @@ -138,7 +138,7 @@ public: * Internal classes made public to allow subclasses to create * customized some traversal algorithms */ - class VTKFILTERSGENERAL_EXPORT vtkCellTree + class VTKCOMMONDATAMODEL_EXPORT vtkCellTree { public: std::vector Nodes; @@ -162,7 +162,7 @@ public: * start is the location in the cell tree. e.g. for root node start is zero. * size is the number of the nodes under the (sub-)tree */ - class VTKFILTERSGENERAL_EXPORT vtkCellTreeNode + class VTKCOMMONDATAMODEL_EXPORT vtkCellTreeNode { public: protected: diff --git a/Filters/General/CMakeLists.txt b/Filters/General/CMakeLists.txt index ca730544051e..2b54897964f8 100644 --- a/Filters/General/CMakeLists.txt +++ b/Filters/General/CMakeLists.txt @@ -13,7 +13,6 @@ set(classes vtkBoxClipDataSet vtkBrownianPoints vtkCellDerivatives - vtkCellTreeLocator vtkCellValidator vtkClipClosedSurface vtkClipConvexPolyData diff --git a/Filters/General/Testing/Cxx/CMakeLists.txt b/Filters/General/Testing/Cxx/CMakeLists.txt index eb3340a2569a..515792dacf5f 100644 --- a/Filters/General/Testing/Cxx/CMakeLists.txt +++ b/Filters/General/Testing/Cxx/CMakeLists.txt @@ -10,7 +10,6 @@ vtk_add_test_cxx(vtkFiltersGeneralCxxTests tests BoxClipTetrahedra.cxx BoxClipTriangulate.cxx,NO_VALID BoxClipTriangulateAndInterpolate.cxx - CellTreeLocator.cxx,NO_VALID TestAppendLocationAttributes.cxx,NO_VALID TestAppendPoints.cxx,NO_VALID TestBooleanOperationPolyDataFilter.cxx -- GitLab From bafe9151cfe4e1e27ecfb847a1b675d4f6f4fd36 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 27 Apr 2022 19:21:12 -0400 Subject: [PATCH 0073/1015] CellLocators: Improve Documentation --- Common/DataModel/vtkAbstractCellLocator.h | 3 +-- Common/DataModel/vtkCellLocator.h | 24 ++++++++++++++++++----- Common/DataModel/vtkCellTreeLocator.h | 23 ++++++++++++++++------ Common/DataModel/vtkStaticCellLocator.h | 20 ++++++++++++++----- Filters/FlowPaths/vtkModifiedBSPTree.h | 24 +++++++++++++++++++---- Filters/General/vtkOBBTree.cxx | 6 ++---- Filters/General/vtkOBBTree.h | 16 ++++++++++++++- 7 files changed, 89 insertions(+), 27 deletions(-) diff --git a/Common/DataModel/vtkAbstractCellLocator.h b/Common/DataModel/vtkAbstractCellLocator.h index 21d3c60a4dda..2f886c30259d 100644 --- a/Common/DataModel/vtkAbstractCellLocator.h +++ b/Common/DataModel/vtkAbstractCellLocator.h @@ -29,9 +29,8 @@ * using vtkAbstractCellLocator::FindClosestPointWithinRadius; * \endverbatim * - * * @sa - * vtkLocator vtkPointLocator vtkOBBTree vtkCellLocator + * vtkLocator vtkCellLocator vtkStaticCellLocator vtkCellTreeLocator vtkModifiedBSPTree vtkOBBTree */ #ifndef vtkAbstractCellLocator_h diff --git a/Common/DataModel/vtkCellLocator.h b/Common/DataModel/vtkCellLocator.h index dc73f4983036..2fb377fcfb5e 100644 --- a/Common/DataModel/vtkCellLocator.h +++ b/Common/DataModel/vtkCellLocator.h @@ -26,17 +26,31 @@ * candidate cells. * * @warning + * vtkCellLocator utilizes the following parent class parameters: + * - Automatic (default true) + * - Level (default 8) + * - MaxLevel (default 8) + * - NumberOfCellsPerNode (default 25) + * - CacheCellBounds (default false) + * - UseExistingSearchStructure (default false) + * - LazyEvaluation (default false) + * + * vtkCellLocator does NOT utilize the following parameters: + * - Tolerance + * - RetainCellLists + * + * @warning * Many other types of spatial locators have been developed, such as - * variable depth octrees and kd-trees. These are often more efficient - * for the operations described here. vtkCellLocator has been designed - * for subclassing; so these locators can be derived if necessary. + * variable depth octrees and bih-trees. These are often more efficient + * for the operations described here. * * @warning * Most of the methods of this class are not thread-safe. For a thread-safe, - * more efficient generic implementation, please use vtkStaticCellLocator + * more efficient generic implementation, please use vtkStaticCellLocator, + * vtkCellTreeLocator. * * @sa - * vtkLocator vtkPointLocator vtkOBBTree vtkStaticCellLocator + * vtkAbstractCellLocator vtkStaticCellLocator vtkCellTreeLocator vtkModifiedBSPTree vtkOBBTree */ #ifndef vtkCellLocator_h diff --git a/Common/DataModel/vtkCellTreeLocator.h b/Common/DataModel/vtkCellTreeLocator.h index 05cb6860d947..ade9c7cd80ff 100644 --- a/Common/DataModel/vtkCellTreeLocator.h +++ b/Common/DataModel/vtkCellTreeLocator.h @@ -15,10 +15,7 @@ /** * @class vtkCellTreeLocator * @brief This class implements the data structures, construction - * algorithms for fast cell location presented in "Fast, Memory-Efficient Cell - * location in Unstructured Grids for Visualization" by Christoph Garth and Kenneth - * I. Joy in VisWeek, 2011. - * + * algorithms for fast cell location. * * Cell Tree is a bounding interval hierarchy based data structure, where child boxes * do not form an exact split of the parent boxes along a dimension. Therefore two axis- @@ -26,12 +23,26 @@ * dimension. This class implements the data structure (Cell Tree Node) and its build * and traversal algorithms described in the paper. * Some methods in building and traversing the cell tree in this class were derived - * avtCellLocatorBIH class in the VisIT Visualization Tool + * from avtCellLocatorBIH class in the VisIT Visualization Tool. + * + * vtkCellTreeLocator utilizes the following parent class parameters: + * - NumberOfCellsPerNode (default 8) + * - CacheCellBounds (default false) + * - UseExistingSearchStructure (default false) + * - LazyEvaluation (default false) * + * vtkCellTreeLocator does NOT utilize the following parameters: + * - Automatic + * - Level + * - MaxLevel + * - Tolerance + * - RetainCellLists * + * @cite "Fast, Memory-Efficient Cell location in Unstructured Grids for Visualization" by + * Christoph Garth and Kenneth I. Joy in VisWeek, 2011. * * @sa - * vtkLocator vtkCellLocator vtkModifiedBSPTree + * vtkAbstractCellLocator vtkCellLocator vtkStaticCellLocator vtkModifiedBSPTree vtkOBBTree */ #ifndef vtkCellTreeLocator_h diff --git a/Common/DataModel/vtkStaticCellLocator.h b/Common/DataModel/vtkStaticCellLocator.h index 732d0f8a291c..fdfec3673d7d 100644 --- a/Common/DataModel/vtkStaticCellLocator.h +++ b/Common/DataModel/vtkStaticCellLocator.h @@ -26,15 +26,25 @@ * (i.e., incremental cell insertion is not supported). * * @warning - * This class is templated. It may run slower than serial execution if the code - * is not optimized during compilation. Build in Release or ReleaseWithDebugInfo. + * vtkStaticCellLocator utilizes the following parent class parameters: + * - Tolerance (default 0.001) + * - Automatic (default true) + * - NumberOfCellsPerNode (default 10) + * + * vtkStaticCellLocator does NOT utilize the following parameters: + * - CacheCellBounds (always cached) + * - UseExistingSearchStructure + * - LazyEvaluation + * - Level + * - MaxLevel + * - RetainCellLists * * @warning - * This class *always* caches cell bounds. + * This class is templated. It may run slower than serial execution if the code + * is not optimized during compilation. Build in Release or ReleaseWithDebugInfo. * * @sa - * vtkLocator vakAbstractCellLocator vtkCellLocator vtkCellTreeLocator - * vtkModifiedBSPTree + * vtkAbstractCellLocator vtkCellLocator vtkCellTreeLocator vtkModifiedBSPTree vtkOBBTree */ #ifndef vtkStaticCellLocator_h diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.h b/Filters/FlowPaths/vtkModifiedBSPTree.h index 1df93aa70f4b..dbcaffdc803d 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.h +++ b/Filters/FlowPaths/vtkModifiedBSPTree.h @@ -34,7 +34,7 @@ =========================================================================*/ /** * @class vtkModifiedBSPTree - * @brief Generate axis aligned BBox tree for raycasting and other Locator based searches + * @brief Generate axis aligned BBox tree for ray-casting and other Locator based searches * * * vtkModifiedBSPTree creates an evenly balanced BSP tree using a top down @@ -78,7 +78,7 @@ * The memory requirement of the nodes themselves is usually of minor * significance. * - * Subdividision is controlled by MaxCellsPerNode - any node with more than + * Subdivision is controlled by MaxCellsPerNode - any node with more than * this number will be subdivided providing a good split plane can be found and * the max depth is not exceeded. * @@ -88,13 +88,27 @@ * Subdividing down to very small cells per node is not generally suggested * as then the 6 stored cell lists are effectively redundant. * - * Values of MaxcellsPerNode of around 16->128 depending on dataset size will + * Values of MaxCellsPerNode of around 16->128 depending on dataset size will * usually give good results. * * Cells are only sorted into 6 lists once - before tree creation, each node * segments the lists and passes them down to the new child nodes whilst * maintaining sorted order. This makes for an efficient subdivision strategy. * + * @warning + * vtkModifiedBSPTree utilizes the following parent class parameters: + * - Level (default 8) + * - MaxLevel (default 8) + * - NumberOfCellsPerNode (default 32) + * - UseExistingSearchStructure (default false) + * - LazyEvaluation (default true) + * + * vtkModifiedBSPTree does NOT utilize the following parameters: + * - CacheCellBounds (always cached) + * - Automatic + * - Tolerance + * - RetainCellLists + * * NB. The following reference has been sent to me * \code * @Article{formella-1995-ray, @@ -136,10 +150,12 @@ * @par Style: * -------------- * This class is currently maintained by J. Biddiscombe who has specially - * requested that the code style not be modified to the kitware standard. + * requested that the code style not be modified to the Kitware standard. * Please respect the contribution of this class by keeping the style * as close as possible to the author's original. * + * @sa + * vtkAbstractCellLocator vtkCellLocator vtkStaticCellLocator vtkCellTreeLocator vtkOBBTree */ #ifndef vtkModifiedBSPTree_h diff --git a/Filters/General/vtkOBBTree.cxx b/Filters/General/vtkOBBTree.cxx index d2bf756a3aba..441ba92a557e 100644 --- a/Filters/General/vtkOBBTree.cxx +++ b/Filters/General/vtkOBBTree.cxx @@ -20,7 +20,6 @@ #include "vtkMath.h" #include "vtkMatrix4x4.h" #include "vtkObjectFactory.h" -#include "vtkPlane.h" #include "vtkPolyData.h" #include "vtkPolygon.h" #include "vtkTriangle.h" @@ -72,14 +71,13 @@ vtkOBBNode::~vtkOBBNode() vtkOBBTree::vtkOBBTree() { this->DataSet = nullptr; - this->Level = 4; + this->Level = 0; this->MaxLevel = 12; - this->Automatic = 1; this->Tolerance = 0.01; this->Tree = nullptr; this->PointsList = nullptr; this->InsertedPoints = nullptr; - this->OBBCount = this->Level = 0; + this->OBBCount = 0; } vtkOBBTree::~vtkOBBTree() diff --git a/Filters/General/vtkOBBTree.h b/Filters/General/vtkOBBTree.h index dbedf99d1599..7c69dfc4755f 100644 --- a/Filters/General/vtkOBBTree.h +++ b/Filters/General/vtkOBBTree.h @@ -34,6 +34,20 @@ * Siggraph `96. * * @warning + * vtkOBBTree utilizes the following parent class parameters: + * - Tolerance (default 0.01) + * - Level (default 4) + * - MaxLevel (default 12) + * - NumberOfCellsPerNode (default 32) + * - RetainCellLists (default true) + * + * vtkOBBTree does NOT utilize the following parameters: + * - Automatic + * - CacheCellBounds + * - UseExistingSearchStructure + * - LazyEvaluation + * + * @warning * Since this algorithms works from a list of cells, the OBB tree will only * bound the "geometry" attached to the cells if the convex hull of the * cells bounds the geometry. @@ -47,7 +61,7 @@ * go a long way to correcting this problem. * * @sa - * vtkLocator vtkCellLocator vtkPointLocator + * vtkAbstractCellLocator vtkCellLocator vtkStaticCellLocator vtkCellTreeLocator vtkModifiedBSPTree */ #ifndef vtkOBBTree_h -- GitLab From 50178e705956cb9bf4a5ae98dfe7e116f820efbd Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 27 Apr 2022 21:23:11 -0400 Subject: [PATCH 0074/1015] vtkCellLocator: Make it thread-safe --- Common/DataModel/vtkCellLocator.cxx | 677 +++++----------------------- Common/DataModel/vtkCellLocator.h | 64 +-- 2 files changed, 141 insertions(+), 600 deletions(-) diff --git a/Common/DataModel/vtkCellLocator.cxx b/Common/DataModel/vtkCellLocator.cxx index e043decbd01b..372af9a453ec 100644 --- a/Common/DataModel/vtkCellLocator.cxx +++ b/Common/DataModel/vtkCellLocator.cxx @@ -31,31 +31,36 @@ vtkStandardNewMacro(vtkCellLocator); typedef vtkIdList* vtkIdListPtr; //------------------------------------------------------------------------------ -class vtkNeighborCells +vtkCellLocator::vtkNeighborCells::vtkNeighborCells(const int size) { -public: - vtkNeighborCells(const int sz, const int ext = 1000) - { - this->P = vtkIntArray::New(); - this->P->Allocate(3 * sz, 3 * ext); - } - ~vtkNeighborCells() { this->P->Delete(); } - int GetNumberOfNeighbors() { return (this->P->GetMaxId() + 1) / 3; } - void Reset() { this->P->Reset(); } + this->Points->Allocate(3 * size); +} - int* GetPoint(int i) { return this->P->GetPointer(3 * i); } - int InsertNextPoint(int* x); +//------------------------------------------------------------------------------ +int vtkCellLocator::vtkNeighborCells::GetNumberOfNeighbors() +{ + return (this->Points->GetMaxId() + 1) / 3; +} -protected: - vtkIntArray* P; -}; +//------------------------------------------------------------------------------ +void vtkCellLocator::vtkNeighborCells::Reset() +{ + this->Points->Reset(); +} + +//------------------------------------------------------------------------------ +int* vtkCellLocator::vtkNeighborCells::GetPoint(int i) +{ + return this->Points->GetPointer(3 * i); +} -inline int vtkNeighborCells::InsertNextPoint(int* x) +//------------------------------------------------------------------------------ +int vtkCellLocator::vtkNeighborCells::InsertNextPoint(int* x) { - int id = this->P->GetMaxId() + 3; - this->P->InsertValue(id, x[2]); - this->P->SetValue(id - 2, x[0]); - this->P->SetValue(id - 1, x[1]); + int id = this->Points->GetMaxId() + 3; + this->Points->InsertValue(id, x[2]); + this->Points->SetValue(id - 2, x[0]); + this->Points->SetValue(id - 1, x[1]); return id / 3; } @@ -68,30 +73,19 @@ vtkCellLocator::vtkCellLocator() this->Level = 8; this->NumberOfCellsPerNode = 25; this->Tree = nullptr; - this->CellHasBeenVisited = nullptr; - this->QueryNumber = 0; this->NumberOfDivisions = 1; this->H[0] = this->H[1] = this->H[2] = 1.0; - this->Buckets = new vtkNeighborCells(10, 10); this->NumberOfOctants = 0; this->Bounds[0] = this->Bounds[2] = this->Bounds[4] = VTK_DOUBLE_MAX; this->Bounds[1] = this->Bounds[3] = this->Bounds[5] = VTK_DOUBLE_MIN; - this->OctantBounds[0] = this->OctantBounds[2] = this->OctantBounds[4] = VTK_DOUBLE_MAX; - this->OctantBounds[1] = this->OctantBounds[3] = this->OctantBounds[5] = VTK_DOUBLE_MIN; } //------------------------------------------------------------------------------ vtkCellLocator::~vtkCellLocator() { - delete this->Buckets; - this->Buckets = nullptr; - this->FreeSearchStructure(); this->FreeCellBounds(); - - delete[] this->CellHasBeenVisited; - this->CellHasBeenVisited = nullptr; } //------------------------------------------------------------------------------ @@ -136,31 +130,29 @@ int vtkCellLocator::GenerateIndex(int offset, int numDivs, int i, int j, int k, } //------------------------------------------------------------------------------ -void vtkCellLocator::ComputeOctantBounds(int i, int j, int k) +void vtkCellLocator::ComputeOctantBounds(double octantBounds[6], int i, int j, int k) { - this->OctantBounds[0] = this->Bounds[0] + i * H[0]; - this->OctantBounds[1] = this->OctantBounds[0] + H[0]; - this->OctantBounds[2] = this->Bounds[2] + j * H[1]; - this->OctantBounds[3] = this->OctantBounds[2] + H[1]; - this->OctantBounds[4] = this->Bounds[4] + k * H[2]; - this->OctantBounds[5] = this->OctantBounds[4] + H[2]; + octantBounds[0] = this->Bounds[0] + i * H[0]; + octantBounds[1] = octantBounds[0] + H[0]; + octantBounds[2] = this->Bounds[2] + j * H[1]; + octantBounds[3] = octantBounds[2] + H[1]; + octantBounds[4] = this->Bounds[4] + k * H[2]; + octantBounds[5] = octantBounds[4] + H[2]; } //------------------------------------------------------------------------------ // Return intersection point (if any) AND the cell which was intersected by // finite line. // -// NOTE: This method is not thread safe (i.e., when invoking this method on -// the same instance of vtkCellLocator). This is the due to the use of the -// data members QueryNumber and CellHasBeenVisited. These should be pulled -// out of the class and made local to the appropriate methods that use -// them. Since there may be a performance cost and possible effects on -// output, this will be done TODO when more time is available. To see an -// alternative implementation, see vtkStaticCellLocator which is thread safe. -// int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) { + this->BuildLocatorIfNeeded(); + if (this->Tree == nullptr) + { + // empty tree, most likely there are no cells in the input data set + return 0; + } double origin[3]; double direction1[3]; double direction2[3]; @@ -169,6 +161,7 @@ int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], do double hitCellBoundsPosition[3], cellBounds[6]; double result; double bounds2[6]; + double octantBounds[6]; int i, leafStart, prod, loop; vtkIdType bestCellId = -1, cId; int idx; @@ -180,13 +173,6 @@ int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], do double deltaT, pDistance, minPDistance = 1.0e38; double length, maxLength = 0.0; - this->BuildLocatorIfNeeded(); - if (this->Tree == nullptr) - { - // empty tree, most likely there are no cells in the input data set - return 0; - } - // convert the line into i,j,k coordinates tMax = 0.0; for (i = 0; i < 3; i++) @@ -205,7 +191,7 @@ int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], do tMax += direction2[i] * direction2[i]; } - tMax = sqrt(tMax); + tMax = std::sqrt(tMax); // create a parametric range around the tolerance deltaT = tol / maxLength; @@ -218,28 +204,20 @@ int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], do if (vtkBox::IntersectBox(bounds2, origin, direction2, hitPosition, result)) { + std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); + // start walking through the octants prod = this->NumberOfDivisions * this->NumberOfDivisions; leafStart = this->NumberOfOctants - this->NumberOfDivisions * prod; bestCellId = -1; - // Clear the array that indicates whether we have visited this cell. - // The array is only cleared when the query number rolls over. This - // saves a number of calls to memset. - this->QueryNumber++; - if (this->QueryNumber == 0) - { - this->ClearCellHasBeenVisited(); - this->QueryNumber++; // can't use 0 as a marker - } - // set up curr and stop dist currDist = 0; for (i = 0; i < 3; i++) { currDist += (hitPosition[i] - origin[i]) * (hitPosition[i] - origin[i]); } - currDist = sqrt(currDist) * this->NumberOfDivisions; + currDist = std::sqrt(currDist) * this->NumberOfDivisions; // add one offset due to the problems around zero for (loop = 0; loop < 3; loop++) @@ -262,14 +240,14 @@ int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], do { if (this->Tree[idx]) { - this->ComputeOctantBounds(pos[0] - 1, pos[1] - 1, pos[2] - 1); + this->ComputeOctantBounds(octantBounds, pos[0] - 1, pos[1] - 1, pos[2] - 1); for (tMax = VTK_DOUBLE_MAX, cellId = 0; cellId < this->Tree[idx]->GetNumberOfIds(); cellId++) { cId = this->Tree[idx]->GetId(cellId); - if (this->CellHasBeenVisited[cId] != this->QueryNumber) + if (!cellHasBeenVisited[cId]) { - this->CellHasBeenVisited[cId] = this->QueryNumber; + cellHasBeenVisited[cId] = true; int hitCellBounds = 0; // check whether we intersect the cell bounds @@ -292,9 +270,9 @@ int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], do this->DataSet->GetCell(cId, cell); if (cell->IntersectWithLine(a0, a1, tol, t, x, pcoords, subId)) { - if (!this->IsInOctantBounds(x, tol)) + if (!vtkAbstractCellLocator::IsInBounds(octantBounds, x, tol)) { - this->CellHasBeenVisited[cId] = 0; // mark the cell non-visited + cellHasBeenVisited[cId] = false; // mark the cell non-visited } else { @@ -311,7 +289,7 @@ int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], do } // if within current parametric range } // if intersection } // if (hitCellBounds) - } // if (!this->CellHasBeenVisited[cId]) + } // if (!CellHasBeenVisited[cId]) } } @@ -389,270 +367,11 @@ int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], do void vtkCellLocator::FindClosestPoint(const double x[3], double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2) { - int i; - vtkIdType j; - int* nei; - vtkIdType closestCell = -1; - int closestSubCell = -1; - int leafStart; - int level; - int ijk[3]; - double minDist2, refinedRadius2, distance2ToBucket; - double distance2ToCellBounds, cellBounds[6]; - double pcoords[3], point[3], cachedPoint[3], weightsArray[6]; - double* weights = weightsArray; - int nWeights = 6, nPoints; - vtkIdList* cellIds; - int stat; - // int minStat=0; //save this variable it is used for debugging - - this->BuildLocatorIfNeeded(); - if (this->Tree == nullptr) - { - // empty tree, most likely there are no cells in the input data set - vtkErrorMacro("vtkCellLocator::FindClosestPoint failed: no cells in the input data set"); - return; - } - - cachedPoint[0] = 0.0; - cachedPoint[1] = 0.0; - cachedPoint[2] = 0.0; - - leafStart = this->NumberOfOctants - - this->NumberOfDivisions * this->NumberOfDivisions * this->NumberOfDivisions; - - // Clear the array that indicates whether we have visited this cell. - // The array is only cleared when the query number rolls over. This - // saves a number of calls to memset. - this->QueryNumber++; - if (this->QueryNumber == 0) - { - this->ClearCellHasBeenVisited(); - this->QueryNumber++; // can't use 0 as a marker - } - - // init - dist2 = -1.0; - refinedRadius2 = VTK_DOUBLE_MAX; - - // - // Find bucket point is in. - // - for (j = 0; j < 3; j++) - { - ijk[j] = static_cast((x[j] - this->Bounds[2 * j]) / this->H[j]); - - if (ijk[j] < 0) - { - ijk[j] = 0; - } - else if (ijk[j] >= this->NumberOfDivisions) - { - ijk[j] = this->NumberOfDivisions - 1; - } - } - // - // Need to search this bucket for closest point. If there are no - // cells in this bucket, search 1st level neighbors, and so on, - // until closest point found. - // - for (closestCell = (-1), minDist2 = VTK_DOUBLE_MAX, level = 0; - (closestCell == -1) && (level < this->NumberOfDivisions); level++) - { - this->GetBucketNeighbors(ijk, this->NumberOfDivisions, level); - - for (i = 0; i < this->Buckets->GetNumberOfNeighbors(); i++) - { - nei = this->Buckets->GetPoint(i); - - // if a neighboring bucket has cells, - if ((cellIds = this->Tree[leafStart + nei[0] + nei[1] * this->NumberOfDivisions + - nei[2] * this->NumberOfDivisions * this->NumberOfDivisions]) != nullptr) - { - // do we still need to test this bucket? - distance2ToBucket = this->Distance2ToBucket(x, nei); - - if (distance2ToBucket < refinedRadius2) - { - // still a viable bucket - for (j = 0; j < cellIds->GetNumberOfIds(); j++) - { - // get the cell - cellId = cellIds->GetId(j); - if (this->CellHasBeenVisited[cellId] != this->QueryNumber) - { - this->CellHasBeenVisited[cellId] = this->QueryNumber; - - // check whether we could be close enough to the cell by - // testing the cell bounds - if (this->CacheCellBounds) - { - distance2ToCellBounds = this->Distance2ToBounds(x, this->CellBounds[cellId]); - } - else - { - this->DataSet->GetCellBounds(cellId, cellBounds); - distance2ToCellBounds = this->Distance2ToBounds(x, cellBounds); - } - - if (distance2ToCellBounds < refinedRadius2) - { - this->DataSet->GetCell(cellId, cell); - - // make sure we have enough storage space for the weights - nPoints = cell->GetPointIds()->GetNumberOfIds(); - if (nPoints > nWeights) - { - if (nWeights > 6) - { - delete[] weights; - } - weights = new double[2 * nPoints]; // allocate some extra room - nWeights = 2 * nPoints; - } - - // evaluate the position to find the closest point - // stat==(-1) is numerical error; stat==0 means outside; - // stat=1 means inside. However, for real world performance, - // we sometime select stat==0 cells if the distance is close - // enough - stat = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights); - - if (stat != -1 && dist2 < minDist2) - // This commented out code works better in many cases - // if ( stat != -1 && ((stat == minStat && dist2 < minDist2) || - // (stat == 1 && minStat == 0)) ) - { - closestCell = cellId; - closestSubCell = subId; - minDist2 = dist2; - cachedPoint[0] = point[0]; - cachedPoint[1] = point[1]; - cachedPoint[2] = point[2]; - refinedRadius2 = dist2; - // minStat = stat; - } - } - } // if (!this->CellHasBeenVisited[cellId]) - } - } - } - } - } - - // Because of the relative location of the points in the buckets, the - // cell found previously may not be the closest cell. Have to - // search those bucket neighbors that might also contain nearby cells. - // - if ((minDist2 > 0.0) && (level < this->NumberOfDivisions)) - { - int prevMinLevel[3], prevMaxLevel[3]; - // setup prevMinLevel and prevMaxLevel to indicate previously visited - // buckets - if (--level < 0) - { - level = 0; - } - for (i = 0; i < 3; i++) - { - prevMinLevel[i] = ijk[i] - level; - if (prevMinLevel[i] < 0) - { - prevMinLevel[i] = 0; - } - prevMaxLevel[i] = ijk[i] + level; - if (prevMaxLevel[i] >= this->NumberOfDivisions) - { - prevMaxLevel[i] = this->NumberOfDivisions - 1; - } - } - this->GetOverlappingBuckets(x, ijk, sqrt(minDist2), prevMinLevel, prevMaxLevel); - - for (i = 0; i < this->Buckets->GetNumberOfNeighbors(); i++) - { - nei = this->Buckets->GetPoint(i); - - if ((cellIds = this->Tree[leafStart + nei[0] + nei[1] * this->NumberOfDivisions + - nei[2] * this->NumberOfDivisions * this->NumberOfDivisions]) != nullptr) - { - // do we still need to test this bucket? - distance2ToBucket = this->Distance2ToBucket(x, nei); - - if (distance2ToBucket < refinedRadius2) - { - // still a viable bucket - for (j = 0; j < cellIds->GetNumberOfIds(); j++) - { - // get the cell - cellId = cellIds->GetId(j); - if (this->CellHasBeenVisited[cellId] != this->QueryNumber) - { - this->CellHasBeenVisited[cellId] = this->QueryNumber; - - // check whether we could be close enough to the cell by - // testing the cell bounds - if (this->CacheCellBounds) - { - distance2ToCellBounds = this->Distance2ToBounds(x, this->CellBounds[cellId]); - } - else - { - this->DataSet->GetCellBounds(cellId, cellBounds); - distance2ToCellBounds = this->Distance2ToBounds(x, cellBounds); - } - - if (distance2ToCellBounds < refinedRadius2) - { - this->DataSet->GetCell(cellId, cell); - - // make sure we have enough storage space for the weights - nPoints = cell->GetPointIds()->GetNumberOfIds(); - if (nPoints > nWeights) - { - if (nWeights > 6) - { - delete[] weights; - } - weights = new double[2 * nPoints]; // allocate some extra room - nWeights = 2 * nPoints; - } - - // evaluate the position to find the closest point - cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights); - - if (dist2 < minDist2) - { - closestCell = cellId; - closestSubCell = subId; - minDist2 = dist2; - cachedPoint[0] = point[0]; - cachedPoint[1] = point[1]; - cachedPoint[2] = point[2]; - refinedRadius2 = dist2; - } - } // if point close enough to cell bounds - } // if cell has not been visited - } // for each cell - } // if bucket is still viable - } // if cells in bucket - } // for each overlapping bucket - } // if not identical point - - if (closestCell != -1) - { - dist2 = minDist2; - cellId = closestCell; - subId = closestSubCell; - closestPoint[0] = cachedPoint[0]; - closestPoint[1] = cachedPoint[1]; - closestPoint[2] = cachedPoint[2]; - this->DataSet->GetCell(cellId, cell); - } - - if (nWeights > 6) - { - delete[] weights; - } + int inside; + double radius = vtkMath::Inf(); + double point[3] = { x[0], x[1], x[2] }; + this->FindClosestPointWithinRadius( + point, radius, closestPoint, cell, cellId, subId, dist2, inside); } //------------------------------------------------------------------------------ @@ -660,6 +379,12 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) { + this->BuildLocatorIfNeeded(); + if (this->Tree == nullptr) + { + // empty tree, most likely there are no cells in the input data set + return 0; + } int i; vtkIdType j; int tmpInside; @@ -667,24 +392,19 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu int closestSubCell = -1; int leafStart; int ijk[3]; - double pcoords[3], point[3], cachedPoint[3], weightsArray[6]; - double* weights = weightsArray; - int nWeights = 6, nPoints; + double pcoords[3], point[3], cachedPoint[3]; + size_t nPoints; int returnVal = 0; vtkIdList* cellIds; + std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); + vtkNeighborCells buckets(10); + std::vector weights(8); double distance2ToBucket; double distance2ToCellBounds, cellBounds[6], currentRadius; double distance2ToDataBounds, maxDistance; int ii, radiusLevels[3], radiusLevel, prevMinLevel[3], prevMaxLevel[3]; - this->BuildLocatorIfNeeded(); - if (this->Tree == nullptr) - { - // empty tree, most likely there are no cells in the input data set - return 0; - } - cachedPoint[0] = 0.0; cachedPoint[1] = 0.0; cachedPoint[2] = 0.0; @@ -692,16 +412,6 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu leafStart = this->NumberOfOctants - this->NumberOfDivisions * this->NumberOfDivisions * this->NumberOfDivisions; - // Clear the array that indicates whether we have visited this cell. - // The array is only cleared when the query number rolls over. This - // saves a number of calls to memset. - this->QueryNumber++; - if (this->QueryNumber == 0) - { - this->ClearCellHasBeenVisited(); - this->QueryNumber++; // can't use 0 as a marker - } - // init dist2 = -1.0; vtkIdType closestCell = -1; @@ -736,9 +446,9 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu { // get the cell cellId = cellIds->GetId(j); - if (this->CellHasBeenVisited[cellId] != this->QueryNumber) + if (!cellHasBeenVisited[cellId]) { - this->CellHasBeenVisited[cellId] = this->QueryNumber; + cellHasBeenVisited[cellId] = true; // check whether we could be close enough to the cell by // testing the cell bounds @@ -757,19 +467,14 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu this->DataSet->GetCell(cellId, cell); // make sure we have enough storage space for the weights - nPoints = cell->GetPointIds()->GetNumberOfIds(); - if (nPoints > nWeights) + nPoints = static_cast(cell->GetPointIds()->GetNumberOfIds()); + if (weights.size() < nPoints) { - if (nWeights > 6) - { - delete[] weights; - } - weights = new double[2 * nPoints]; // allocate some extra room - nWeights = 2 * nPoints; + weights.resize(2 * nPoints); } // evaluate the position to find the closest point - tmpInside = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights); + tmpInside = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights.data()); if (dist2 < minDist2) { inside = tmpInside; @@ -782,12 +487,12 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu refinedRadius2 = dist2; } } - } // if (this->CellHasBeenVisited[cellId]) + } // if (CellHasBeenVisited[cellId]) } } // Now, search only those buckets that are within a radius. The radius used - // is the smaller of sqrt(dist2) and the radius that is passed in. To avoid + // is the minimum of std::sqrt(dist2) and the radius that is passed in. To avoid // checking a large number of buckets unnecessarily, if the radius is // larger than the dimensions of a bucket, we search outward using a // simple heuristic of rings. This heuristic ends up collecting inner @@ -796,7 +501,7 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu // if (dist2 < radius2 && dist2 >= 0.0) { - refinedRadius = sqrt(dist2); + refinedRadius = std::sqrt(dist2); refinedRadius2 = dist2; } else @@ -806,7 +511,7 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu } distance2ToDataBounds = this->Distance2ToBounds(x, this->Bounds); - maxDistance = sqrt(distance2ToDataBounds) + this->DataSet->GetLength(); + maxDistance = std::sqrt(distance2ToDataBounds) + this->DataSet->GetLength(); if (refinedRadius > maxDistance) { refinedRadius = maxDistance; @@ -844,11 +549,11 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu currentRadius = refinedRadius; // used in if at bottom of this for loop // Build up a list of buckets that are arranged in rings - this->GetOverlappingBuckets(x, ijk, refinedRadius / ii, prevMinLevel, prevMaxLevel); + this->GetOverlappingBuckets(buckets, x, refinedRadius / ii, prevMinLevel, prevMaxLevel); - for (i = 0; i < this->Buckets->GetNumberOfNeighbors(); i++) + for (i = 0; i < buckets.GetNumberOfNeighbors(); i++) { - nei = this->Buckets->GetPoint(i); + nei = buckets.GetPoint(i); if ((cellIds = this->Tree[leafStart + nei[0] + nei[1] * this->NumberOfDivisions + nei[2] * numberOfBucketsPerPlane]) != nullptr) @@ -863,9 +568,9 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu { // get the cell cellId = cellIds->GetId(j); - if (this->CellHasBeenVisited[cellId] != this->QueryNumber) + if (!cellHasBeenVisited[cellId]) { - this->CellHasBeenVisited[cellId] = this->QueryNumber; + cellHasBeenVisited[cellId] = true; // check whether we could be close enough to the cell by // testing the cell bounds @@ -884,19 +589,14 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu this->DataSet->GetCell(cellId, cell); // make sure we have enough storage space for the weights - nPoints = cell->GetPointIds()->GetNumberOfIds(); - if (nPoints > nWeights) + nPoints = static_cast(cell->GetPointIds()->GetNumberOfIds()); + if (weights.size() < nPoints) { - if (nWeights > 6) - { - delete[] weights; - } - weights = new double[2 * nPoints]; // allocate some extra room - nWeights = 2 * nPoints; + weights.resize(2 * nPoints); } // evaluate the position to find the closest point - tmpInside = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights); + tmpInside = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights.data()); if (dist2 < minDist2) { @@ -907,7 +607,7 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu cachedPoint[0] = point[0]; cachedPoint[1] = point[1]; cachedPoint[2] = point[2]; - refinedRadius = sqrt(minDist2); + refinedRadius = std::sqrt(minDist2); refinedRadius2 = minDist2; } } // if point close enough to cell bounds @@ -941,81 +641,9 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu returnVal = 1; } - if (nWeights > 6) - { - delete[] weights; - } - return returnVal; } -//------------------------------------------------------------------------------ -// Internal function to get bucket neighbors at specified "level". The -// bucket neighbors are indices into the "leaf-node" layer of the octree. -// These indices must be offset by number of octants before the leaf node -// layer before they can be used. Only those buckets with cells are returned. -// -void vtkCellLocator::GetBucketNeighbors(int ijk[3], int ndivs, int level) -{ - int i, j, k, min, max, minLevel[3], maxLevel[3]; - int nei[3]; - int leafStart; - int numberOfBucketsPerPlane; - - this->BuildLocatorIfNeeded(); - - numberOfBucketsPerPlane = this->NumberOfDivisions * this->NumberOfDivisions; - leafStart = this->NumberOfOctants - numberOfBucketsPerPlane * this->NumberOfDivisions; - - // Initialize - // - this->Buckets->Reset(); - - // If at this bucket, just place into list - // - if (level == 0) - { - if (this->Tree[leafStart + ijk[0] + ijk[1] * this->NumberOfDivisions + - ijk[2] * numberOfBucketsPerPlane]) - { - this->Buckets->InsertNextPoint(ijk); - } - return; - } - - // Create permutations of the ijk indices that are at the level - // required. If these are legal buckets, add to list for searching. - // - for (i = 0; i < 3; i++) - { - min = ijk[i] - level; - max = ijk[i] + level; - minLevel[i] = (min > 0 ? min : 0); - maxLevel[i] = (max < (ndivs - 1) ? max : (ndivs - 1)); - } - - for (k = minLevel[2]; k <= maxLevel[2]; k++) - { - for (j = minLevel[1]; j <= maxLevel[1]; j++) - { - for (i = minLevel[0]; i <= maxLevel[0]; i++) - { - if (i == (ijk[0] + level) || i == (ijk[0] - level) || j == (ijk[1] + level) || - j == (ijk[1] - level) || k == (ijk[2] + level) || k == (ijk[2] - level)) - { - if (this->Tree[leafStart + i + j * this->NumberOfDivisions + k * numberOfBucketsPerPlane]) - { - nei[0] = i; - nei[1] = j; - nei[2] = k; - this->Buckets->InsertNextPoint(nei); - } - } - } - } - } -} - //------------------------------------------------------------------------------ // Internal method to find those buckets that are within distance specified. // Only those buckets outside of level radiuses of ijk are returned. The @@ -1024,8 +652,8 @@ void vtkCellLocator::GetBucketNeighbors(int ijk[3], int ndivs, int level) // layer before they can be used. Only buckets that have cells are placed // in the bucket list. // -void vtkCellLocator::GetOverlappingBuckets( - const double x[3], int vtkNotUsed(ijk)[3], double dist, int prevMinLevel[3], int prevMaxLevel[3]) +void vtkCellLocator::GetOverlappingBuckets(vtkNeighborCells& buckets, const double x[3], + double dist, int prevMinLevel[3], int prevMaxLevel[3]) { int i, j, k, nei[3], minLevel[3], maxLevel[3]; int leafStart, kFactor, jFactor; @@ -1037,7 +665,7 @@ void vtkCellLocator::GetOverlappingBuckets( leafStart = this->NumberOfOctants - numberOfBucketsPerPlane * this->NumberOfDivisions; // Initialize - this->Buckets->Reset(); + buckets.Reset(); // Determine the range of indices in each direction for (i = 0; i < 3; i++) @@ -1107,7 +735,7 @@ void vtkCellLocator::GetOverlappingBuckets( nei[0] = i; nei[1] = j; nei[2] = k; - this->Buckets->InsertNextPoint(nei); + buckets.InsertNextPoint(nei); } } } @@ -1148,9 +776,12 @@ vtkIdList* vtkCellLocator::GetCells(int octantId) void vtkCellLocator::BuildLocator() { if (this->LazyEvaluation) + { return; + } this->ForceBuildLocator(); } + //------------------------------------------------------------------------------ void vtkCellLocator::BuildLocatorIfNeeded() { @@ -1164,12 +795,13 @@ void vtkCellLocator::BuildLocatorIfNeeded() } } } + //------------------------------------------------------------------------------ void vtkCellLocator::ForceBuildLocator() { - // // don't rebuild if build time is newer than modified and dataset modified time - if ((this->Tree) && (this->BuildTime > this->MTime) && (this->BuildTime > DataSet->GetMTime())) + if ((this->Tree) && (this->BuildTime > this->MTime) && + (this->BuildTime > this->DataSet->GetMTime())) { return; } @@ -1182,11 +814,11 @@ void vtkCellLocator::ForceBuildLocator() } this->BuildLocatorInternal(); } + //------------------------------------------------------------------------------ // Method to form subdivision of space based on the cells provided and // subject to the constraints of levels and NumberOfCellsPerNode. // The result is directly addressable and of uniform subdivision. -// void vtkCellLocator::BuildLocatorInternal() { double length, cellBounds[6], *boundsPtr; @@ -1210,13 +842,10 @@ void vtkCellLocator::BuildLocatorInternal() this->DataSet->ComputeBounds(); // Make sure the appropriate data is available - // if (this->Tree) { this->FreeSearchStructure(); } - delete[] this->CellHasBeenVisited; - this->CellHasBeenVisited = nullptr; this->FreeCellBounds(); // Size the root cell. Initialize cell data structure, compute @@ -1237,8 +866,9 @@ void vtkCellLocator::BuildLocatorInternal() if (this->Automatic) { - this->Level = static_cast(ceil( - log(static_cast(numCells) / numCellsPerBucket) / (log(static_cast(8.0))))); + this->Level = + static_cast(std::ceil(std::log(static_cast(numCells) / numCellsPerBucket) / + (std::log(static_cast(8.0))))); } this->Level = (this->Level > this->MaxLevel ? this->MaxLevel : this->Level); @@ -1256,10 +886,6 @@ void vtkCellLocator::BuildLocatorInternal() // NOLINTNEXTLINE(bugprone-sizeof-expression) memset(this->Tree, 0, numOctants * sizeof(*this->Tree)); - this->CellHasBeenVisited = new unsigned char[numCells]; - this->ClearCellHasBeenVisited(); - this->QueryNumber = 0; - if (this->CacheCellBounds) { this->StoreCellBounds(); @@ -1275,7 +901,6 @@ void vtkCellLocator::BuildLocatorInternal() // Insert each cell into the appropriate octant. Make sure cell // falls within octant. - // parentOffset = numOctants - (ndivs * ndivs * ndivs); product = ndivs * ndivs; boundsPtr = cellBounds; @@ -1327,7 +952,6 @@ void vtkCellLocator::BuildLocatorInternal() } } } - } // for all cells this->BuildTime.Modified(); @@ -1408,7 +1032,7 @@ void vtkCellLocator::GenerateRepresentation(int level, vtkPolyData* pd) numOctants *= 8; } - // loop over all octabts generating visible faces + // loop over all octants generating visible faces for (k = 0; k < numDivs; k++) { for (j = 0; j < numDivs; j++) @@ -1551,24 +1175,6 @@ void vtkCellLocator::GenerateFace( polys->InsertNextCell(4, ids); } -//------------------------------------------------------------------------------ -void vtkCellLocator::ClearCellHasBeenVisited() -{ - if (this->CellHasBeenVisited && this->DataSet) - { - memset(this->CellHasBeenVisited, 0, this->DataSet->GetNumberOfCells()); - } -} - -//------------------------------------------------------------------------------ -void vtkCellLocator::ClearCellHasBeenVisited(vtkIdType id) -{ - if (this->CellHasBeenVisited && this->DataSet && id < this->DataSet->GetNumberOfCells()) - { - this->CellHasBeenVisited[id] = 0; - } -} - //------------------------------------------------------------------------------ // Calculate the distance between the point x to the bucket "nei". // @@ -1596,54 +1202,19 @@ double vtkCellLocator::Distance2ToBucket(const double x[3], int nei[3]) // routine can make it 25% slower!!!! double vtkCellLocator::Distance2ToBounds(const double x[3], double bounds[6]) { - double distance; - double deltas[3]; - // Are we within the bounds? if (x[0] >= bounds[0] && x[0] <= bounds[1] && x[1] >= bounds[2] && x[1] <= bounds[3] && x[2] >= bounds[4] && x[2] <= bounds[5]) { return 0.0; } - - deltas[0] = deltas[1] = deltas[2] = 0.0; - - // dx - // - if (x[0] < bounds[0]) - { - deltas[0] = bounds[0] - x[0]; - } - else if (x[0] > bounds[1]) - { - deltas[0] = x[0] - bounds[1]; - } - - // dy - // - if (x[1] < bounds[2]) - { - deltas[1] = bounds[2] - x[1]; - } - else if (x[1] > bounds[3]) - { - deltas[1] = x[1] - bounds[3]; - } - - // dz - // - if (x[2] < bounds[4]) - { - deltas[2] = bounds[4] - x[2]; - } - else if (x[2] > bounds[5]) - { - deltas[2] = x[2] - bounds[5]; - } - - distance = vtkMath::Dot(deltas, deltas); - return distance; + double deltas[3]; + deltas[0] = x[0] < bounds[0] ? bounds[0] - x[0] : (x[0] > bounds[1] ? x[0] - bounds[1] : 0.0); + deltas[1] = x[1] < bounds[2] ? bounds[2] - x[1] : (x[1] > bounds[3] ? x[1] - bounds[3] : 0.0); + deltas[2] = x[2] < bounds[4] ? bounds[4] - x[2] : (x[2] > bounds[5] ? x[2] - bounds[5] : 0.0); + return vtkMath::SquaredNorm(deltas); } + //------------------------------------------------------------------------------ vtkIdType vtkCellLocator::FindCell( double x[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) @@ -1651,15 +1222,11 @@ vtkIdType vtkCellLocator::FindCell( int subId; return this->FindCell(x, tol2, cell, subId, pcoords, weights); } + //------------------------------------------------------------------------------ vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { - vtkIdList* cellIds; - int ijk[3]; - double dist2; - double cellBounds[6]; - this->BuildLocatorIfNeeded(); if (this->Tree == nullptr) { @@ -1672,6 +1239,10 @@ vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGene return -1; } + vtkIdList* cellIds; + int ijk[3]; + double dist2; + int leafStart = this->NumberOfOctants - this->NumberOfDivisions * this->NumberOfDivisions * this->NumberOfDivisions; @@ -1790,13 +1361,12 @@ void vtkCellLocator::FindCellsAlongLine( const double p1[3], const double p2[3], double vtkNotUsed(tol), vtkIdList* cells) { this->BuildLocatorIfNeeded(); - - cells->Reset(); if (this->Tree == nullptr) { // empty tree, most likely there are no cells in the input data set return; } + cells->Reset(); double origin[3]; double direction1[3]; @@ -1834,7 +1404,7 @@ void vtkCellLocator::FindCellsAlongLine( bounds2[2 * i + 1] = 1.0; tMax += direction2[i] * direction2[i]; } - tMax = sqrt(tMax); + tMax = std::sqrt(tMax); // create a parametric range around the tolerance stopDist = tMax * this->NumberOfDivisions; @@ -1845,27 +1415,19 @@ void vtkCellLocator::FindCellsAlongLine( if (vtkBox::IntersectBox(bounds2, origin, direction2, hitPosition, result)) { + std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); + // start walking through the octants prod = this->NumberOfDivisions * this->NumberOfDivisions; leafStart = this->NumberOfOctants - this->NumberOfDivisions * prod; - // Clear the array that indicates whether we have visited this cell. - // The array is only cleared when the query number rolls over. This - // saves a number of calls to memset. - this->QueryNumber++; - if (this->QueryNumber == 0) - { - this->ClearCellHasBeenVisited(); - this->QueryNumber++; // can't use 0 as a marker - } - // set up curr and stop dist currDist = 0; for (i = 0; i < 3; i++) { currDist += (hitPosition[i] - origin[i]) * (hitPosition[i] - origin[i]); } - currDist = sqrt(currDist) * this->NumberOfDivisions; + currDist = std::sqrt(currDist) * this->NumberOfDivisions; // add one offset due to the problems around zero for (loop = 0; loop < 3; loop++) @@ -1888,13 +1450,12 @@ void vtkCellLocator::FindCellsAlongLine( { if (this->Tree[idx]) { - this->ComputeOctantBounds(pos[0] - 1, pos[1] - 1, pos[2] - 1); for (cellId = 0; cellId < this->Tree[idx]->GetNumberOfIds(); cellId++) { cId = this->Tree[idx]->GetId(cellId); - if (this->CellHasBeenVisited[cId] != this->QueryNumber) + if (!cellHasBeenVisited[cId]) { - this->CellHasBeenVisited[cId] = this->QueryNumber; + cellHasBeenVisited[cId] = true; // check whether we intersect the cell bounds if (this->CacheCellBounds) @@ -1913,7 +1474,7 @@ void vtkCellLocator::FindCellsAlongLine( { cells->InsertUniqueId(cId); } // if (hitCellBounds) - } // if (!this->CellHasBeenVisited[cId]) + } // if (!CellHasBeenVisited[cId]) } } diff --git a/Common/DataModel/vtkCellLocator.h b/Common/DataModel/vtkCellLocator.h index 2fb377fcfb5e..9e90f892f296 100644 --- a/Common/DataModel/vtkCellLocator.h +++ b/Common/DataModel/vtkCellLocator.h @@ -39,16 +39,6 @@ * - Tolerance * - RetainCellLists * - * @warning - * Many other types of spatial locators have been developed, such as - * variable depth octrees and bih-trees. These are often more efficient - * for the operations described here. - * - * @warning - * Most of the methods of this class are not thread-safe. For a thread-safe, - * more efficient generic implementation, please use vtkStaticCellLocator, - * vtkCellTreeLocator. - * * @sa * vtkAbstractCellLocator vtkStaticCellLocator vtkCellTreeLocator vtkModifiedBSPTree vtkOBBTree */ @@ -58,8 +48,9 @@ #include "vtkAbstractCellLocator.h" #include "vtkCommonDataModelModule.h" // For export macro +#include "vtkNew.h" // For vtkNew -class vtkNeighborCells; +class vtkIntArray; class VTKCOMMONDATAMODEL_EXPORT vtkCellLocator : public vtkAbstractCellLocator { @@ -90,7 +81,6 @@ public: * the finite line. The cell is returned as a cell id and as a generic * cell. For other IntersectWithLine signatures, see * vtkAbstractCellLocator. - * THIS METHOD IS NOT THREAD SAFE. */ int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; @@ -105,7 +95,6 @@ public: * deallocation can be done only once outside the for loop. If a cell is * found, "cell" contains the points and ptIds for the cell "cellId" upon * exit. - * THIS METHOD IS NOT THREAD SAFE. */ void FindClosestPoint(const double x[3], double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2) override; @@ -126,7 +115,6 @@ public: * inside returns the return value of the EvaluatePosition call to the * closest cell; inside(=1) or outside(=0). For other * FindClosestPointWithinRadius signatures, see vtkAbstractCellLocator. - * THIS METHOD IS NOT THREAD SAFE. */ vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; @@ -167,7 +155,6 @@ public: * that an empty cell list is returned. The user must provide the vtkIdList * to populate. This method returns data only after the locator has been * built. - * THIS METHOD IS NOT THREAD SAFE. */ void FindCellsAlongLine( const double p1[3], const double p2[3], double tolerance, vtkIdList* cells) override; @@ -188,48 +175,41 @@ protected: vtkCellLocator(); ~vtkCellLocator() override; - void GetBucketNeighbors(int ijk[3], int ndivs, int level); - void GetOverlappingBuckets( - const double x[3], int ijk[3], double dist, int prevMinLevel[3], int prevMaxLevel[3]); + //------------------------------------------------------------------------------ + class vtkNeighborCells + { + public: + vtkNeighborCells(int size); + + inline int GetNumberOfNeighbors(); + + inline void Reset(); - void ClearCellHasBeenVisited(); - void ClearCellHasBeenVisited(vtkIdType id); + inline int* GetPoint(int i); + + inline int InsertNextPoint(int* x); + + protected: + vtkNew Points; + }; + + void GetOverlappingBuckets(vtkNeighborCells& buckets, const double x[3], double dist, + int prevMinLevel[3], int prevMaxLevel[3]); double Distance2ToBucket(const double x[3], int nei[3]); double Distance2ToBounds(const double x[3], double bounds[6]); int NumberOfOctants; // number of octants in tree double Bounds[6]; // bounding box root octant - int NumberOfParents; // number of parent octants double H[3]; // width of leaf octant in x-y-z directions int NumberOfDivisions; // number of "leaf" octant sub-divisions vtkIdList** Tree; // octree void MarkParents(void*, int, int, int, int, int); - void GetChildren(int idx, int level, int children[8]); int GenerateIndex(int offset, int numDivs, int i, int j, int k, vtkIdType& idx); void GenerateFace( int face, int numDivs, int i, int j, int k, vtkPoints* pts, vtkCellArray* polys); - - vtkNeighborCells* Buckets; - unsigned char* CellHasBeenVisited; - unsigned char QueryNumber; - - void ComputeOctantBounds(int i, int j, int k); - double OctantBounds[6]; // the bounds of the current octant - int IsInOctantBounds(const double x[3], double tol = 0.0) - { - if (this->OctantBounds[0] - tol <= x[0] && x[0] <= this->OctantBounds[1] + tol && - this->OctantBounds[2] - tol <= x[1] && x[1] <= this->OctantBounds[3] + tol && - this->OctantBounds[4] - tol <= x[2] && x[2] <= this->OctantBounds[5] + tol) - { - return 1; - } - else - { - return 0; - } - } + void ComputeOctantBounds(double octantBounds[6], int i, int j, int k); private: vtkCellLocator(const vtkCellLocator&) = delete; -- GitLab From c46157299d5c8efb443bb2cbbc070f5b5e0e9d4a Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Tue, 3 May 2022 00:01:31 -0400 Subject: [PATCH 0075/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index a056d5dc01cb..3d51d235c780 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220502) +set(VTK_BUILD_VERSION 20220503) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 5af0b700eaeca65b0a4cc77948f5c9fcb573fca7 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 28 Apr 2022 12:39:40 -0400 Subject: [PATCH 0076/1015] CellLocators: Unify IntersectWithLine/FindCellAlongLine vtkCellLocator(CL), vtkStaticCellLocator(SCL), vtkCellTreeLocator(CTL) vtkModifiedBSPTree(BSP) now all have a similar implementation with regard to their IntersectWithLine and FindCellAlongLine functions. FindCellAlongLine is actually a special case of a more general IntersectWithLine that returns points/cellIds which now all cell locators implement, and therefore they also support FindCellAlongLine (new for CTL, BSP). Inside those functions the given tolerance is now also used not only for the cell's intersectWithLine function but also for checking for intersection with the bounds of the cell itself which happens before that. This is needed because if we don't use the tolerance in the bounds check, for a line that passes right next to the bounds of a quad, the cell's IntersectWithLine using the tolerance can return that there was an intersection, but the intersection with the bounds of cell could say return no intersection, if the tolerance is not used. This way we could have a false-negative. In the past SCL had issues with not intersecting with cells in the functions IntersectWithLine/FindCellsAlongALine. For that reason Tolerance was introduced to ameliorate this issue by padding the bins by the Locator's Tolerance. Tolerance needed to be removed because nobody was using it except 1-2 classes that had the problem of intersection, and it would lead to really slow performance if the dataset was small bounds-wise, because the default Tolerance was 0.001. The intersection issues have actually been resolved thanks to the double tolerance that Will Schroeder introduced in FindCellsAlongALine and I copied in IntersectWithLine as well. This way, we get more accurate and faster, results with a smaller memory foot-print. Since Tolerance is no longer used, vtkStaticCellLocator's UseDiagonalLengthTolerance has also been deprecated. CTL's and BSP's IntersectWithLine have become thread-safe, while the none thread-safe functions can still be called through the functions of the vtkAbstractCellLocator. BSP has now the option of not caching cell bounds. Finally, vtkAbstractCellLocator now clearly states which functions are thread-safe or not and the documentation has been unified throughout all the cell locators. --- Common/DataModel/Testing/Cxx/CMakeLists.txt | 6 + .../Testing/Cxx/TestCellLocatorsEdgeCases.cxx | 119 +++ .../Testing/Cxx/TestStaticCellLinks.cxx | 2 +- Common/DataModel/vtkAbstractCellLocator.cxx | 63 +- Common/DataModel/vtkAbstractCellLocator.h | 153 ++- Common/DataModel/vtkCellLocator.cxx | 902 ++++++++---------- Common/DataModel/vtkCellLocator.h | 108 ++- Common/DataModel/vtkCellTreeLocator.cxx | 665 +++++-------- Common/DataModel/vtkCellTreeLocator.h | 92 +- Common/DataModel/vtkStaticCellLocator.cxx | 274 ++++-- Common/DataModel/vtkStaticCellLocator.h | 228 ++--- Filters/FlowPaths/vtkModifiedBSPTree.cxx | 745 ++++----------- Filters/FlowPaths/vtkModifiedBSPTree.h | 108 +-- Filters/General/vtkOBBTree.cxx | 33 +- Filters/General/vtkOBBTree.h | 28 +- Filters/ParallelDIY2/vtkProbeLineFilter.cxx | 1 - 16 files changed, 1611 insertions(+), 1916 deletions(-) create mode 100644 Common/DataModel/Testing/Cxx/TestCellLocatorsEdgeCases.cxx diff --git a/Common/DataModel/Testing/Cxx/CMakeLists.txt b/Common/DataModel/Testing/Cxx/CMakeLists.txt index e747ea382dae..fd2ed5074ce2 100644 --- a/Common/DataModel/Testing/Cxx/CMakeLists.txt +++ b/Common/DataModel/Testing/Cxx/CMakeLists.txt @@ -117,6 +117,7 @@ vtk_add_test_cxx(vtkCommonDataModelCxxTests data_tests ) # add to the list but don't define a test list(APPEND data_tests + TestCellLocatorsEdgeCases.cxx TestPolyhedron2.cxx TestPolyhedronContouring.cxx TestPolyhedronCutter.cxx @@ -126,6 +127,11 @@ list(APPEND data_tests vtk_add_test_cxx(vtkCommonDataModelCxxTests output_tests TestKdTreeRepresentation.cxx,NO_DATA ) +ExternalData_add_test(${_vtk_build_TEST_DATA_TARGET} + NAME VTK::CommonDataModelCxxTests-TestCellLocatorsEdgeCases + COMMAND vtkCommonDataModelCxxTests TestCellLocatorsEdgeCases + DATA{../Data/test_surface.vtp} + ) ExternalData_add_test(${_vtk_build_TEST_DATA_TARGET} NAME VTK::CommonDataModelCxxTests-TestPolyhedron2 COMMAND vtkCommonDataModelCxxTests TestPolyhedron2 diff --git a/Common/DataModel/Testing/Cxx/TestCellLocatorsEdgeCases.cxx b/Common/DataModel/Testing/Cxx/TestCellLocatorsEdgeCases.cxx new file mode 100644 index 000000000000..a27bf952b525 --- /dev/null +++ b/Common/DataModel/Testing/Cxx/TestCellLocatorsEdgeCases.cxx @@ -0,0 +1,119 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestCellLocatorsEdgeCases.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ + +#include "vtkCellLocator.h" +#include "vtkCellTreeLocator.h" +#include "vtkGenericCell.h" +#include "vtkIdList.h" +#include "vtkNew.h" +#include "vtkPolyData.h" +#include "vtkStaticCellLocator.h" +#include "vtkXMLPolyDataReader.h" + +bool TestCell(vtkDataSet* ds, vtkIdType cellId, double x1[3], double x2[3], double tol) +{ + double t = 0.0; + double x[3] = { 0.0, 0.0, 0.0 }; + double pcoords[3] = { 0.0, 0.0, 0.0 }; + int subId = 0; + vtkNew cell; + ds->GetCell(cellId, cell); + + return static_cast(cell->IntersectWithLine(x1, x2, tol, t, x, pcoords, subId)); +} + +bool TestLocator(vtkDataSet* ds, vtkAbstractCellLocator* loc) +{ + std::cout << "\nTesting " << loc->GetClassName() << std::endl; + loc->SetDataSet(ds); + loc->CacheCellBoundsOn(); + loc->AutomaticOn(); + loc->BuildLocator(); + + vtkNew cell; + vtkNew cellList; + double t = 0.0; + double x[3] = { 0.0, 0.0, 0.0 }; + double pcoords[3] = { 0.0, 0.0, 0.0 }; + int subId = 0; + vtkIdType cellId = -1; + double tol = 1.0e-15; + double x1[3] = { 0.437783024586950, 0.0263950841209563, 0.373722994626027 }; + double x2[3] = { 0.442140196830658, 0.0256207765183134, 0.374080391702881 }; + + // This IntersectWithLine returns the intersected cell with the smallest parametric t. + bool foundIntersectWithLineBest = false; + loc->IntersectWithLine(x1, x2, tol, t, x, pcoords, subId, cellId, cell); + if (cellId != -1) + { + std::cout << "IntersectWithLineBest: " << cellId << std::endl; + foundIntersectWithLineBest = TestCell(ds, cellId, x1, x2, tol); + } + + // This IntersectWithLine returns all the cells that intersected with the line + bool foundIntersectWithLineAll = false; + loc->IntersectWithLine(x1, x2, tol, nullptr, cellList, cell); + for (vtkIdType i = 0; i < cellList->GetNumberOfIds(); ++i) + { + std::cout << "IntersectWithLineAll: " << cellList->GetId(i) << std::endl; + foundIntersectWithLineAll |= TestCell(ds, cellList->GetId(i), x1, x2, tol); + } + + // This FindCellAlongLine (which is actually the above version without passing a cell) + // returns all the cells that their bounds intersected with the line + bool foundFindCellAlongLine = false; + loc->FindCellsAlongLine(x1, x2, tol, cellList); + for (vtkIdType i = 0; i < cellList->GetNumberOfIds(); ++i) + { + std::cout << "FindCellAlongLine: " << cellList->GetId(i) << std::endl; + foundFindCellAlongLine |= TestCell(ds, cellList->GetId(i), x1, x2, tol); + } + return foundIntersectWithLineBest && foundIntersectWithLineAll && foundFindCellAlongLine; +} + +int TestCellLocatorsEdgeCases(int argc, char* argv[]) +{ + if (argc < 2) + { + cout << "Not enough arguments."; + return EXIT_FAILURE; + } + + //=========== + // Test Setup + //=========== + vtkNew reader; + char* fname = argv[1]; + reader->SetFileName(fname); + reader->Update(); + vtkDataSet* data = reader->GetOutput(); + + bool allTestsPassed = true; + vtkNew cl; + allTestsPassed &= TestLocator(data, cl); + vtkNew scl; + allTestsPassed &= TestLocator(data, scl); + vtkNew ctl; + allTestsPassed &= TestLocator(data, ctl); + // can't test vtkModifiedBSPTree because of the peculiarities + // of how this test is executed + // vtkNew mbsp; + // allTestsPassed &= TestLocator(data, mbsp); + + //==================== + // Final Tests Outcome + //==================== + return allTestsPassed ? EXIT_SUCCESS : EXIT_FAILURE; +} diff --git a/Common/DataModel/Testing/Cxx/TestStaticCellLinks.cxx b/Common/DataModel/Testing/Cxx/TestStaticCellLinks.cxx index 85b6e2ece1e2..909380df086b 100644 --- a/Common/DataModel/Testing/Cxx/TestStaticCellLinks.cxx +++ b/Common/DataModel/Testing/Cxx/TestStaticCellLinks.cxx @@ -1,7 +1,7 @@ /*========================================================================= Program: Visualization Toolkit - Module: TestCellLocator.cxx + Module: TestStaticCellLinks.cxx Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen All rights reserved. diff --git a/Common/DataModel/vtkAbstractCellLocator.cxx b/Common/DataModel/vtkAbstractCellLocator.cxx index 0ec9a12a29ce..4e739dae769d 100644 --- a/Common/DataModel/vtkAbstractCellLocator.cxx +++ b/Common/DataModel/vtkAbstractCellLocator.cxx @@ -39,14 +39,10 @@ vtkAbstractCellLocator::vtkAbstractCellLocator() this->NumberOfCellsPerNode = 32; this->UseExistingSearchStructure = 0; this->LazyEvaluation = 0; - this->GenericCell = vtkGenericCell::New(); } //------------------------------------------------------------------------------ -vtkAbstractCellLocator::~vtkAbstractCellLocator() -{ - this->GenericCell->Delete(); -} +vtkAbstractCellLocator::~vtkAbstractCellLocator() = default; //------------------------------------------------------------------------------ bool vtkAbstractCellLocator::StoreCellBounds() @@ -139,6 +135,23 @@ int vtkAbstractCellLocator::IntersectWithLine(const double vtkNotUsed(p1)[3], return 0; } +//------------------------------------------------------------------------------ +int vtkAbstractCellLocator::IntersectWithLine( + const double p1[3], const double p2[3], const double tol, vtkPoints* points, vtkIdList* cellIds) +{ + return this->IntersectWithLine(p1, p2, tol, points, cellIds, this->GenericCell); +} + +//------------------------------------------------------------------------------ +int vtkAbstractCellLocator::IntersectWithLine(const double vtkNotUsed(p1)[3], + const double vtkNotUsed(p2)[3], double vtkNotUsed(tol), vtkPoints* vtkNotUsed(points), + vtkIdList* vtkNotUsed(cellIds), vtkGenericCell* vtkNotUsed(cell)) +{ + vtkErrorMacro(<< "The locator class - " << this->GetClassName() + << " does not yet support this IntersectWithLine interface"); + return 0; +} + //------------------------------------------------------------------------------ void vtkAbstractCellLocator::FindClosestPoint( const double x[3], double closestPoint[3], vtkIdType& cellId, int& subId, double& dist2) @@ -147,12 +160,14 @@ void vtkAbstractCellLocator::FindClosestPoint( } //------------------------------------------------------------------------------ -void vtkAbstractCellLocator::FindClosestPoint(const double vtkNotUsed(x)[3], - double vtkNotUsed(closestPoint)[3], vtkGenericCell* vtkNotUsed(cell), - vtkIdType& vtkNotUsed(cellId), int& vtkNotUsed(subId), double& vtkNotUsed(dist2)) +void vtkAbstractCellLocator::FindClosestPoint(const double x[3], double closestPoint[3], + vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2) { - vtkErrorMacro(<< "The locator class - " << this->GetClassName() - << " does not yet support FindClosestPoint"); + int inside; + double radius = vtkMath::Inf(); + double point[3] = { x[0], x[1], x[2] }; + this->FindClosestPointWithinRadius( + point, radius, closestPoint, cell, cellId, subId, dist2, inside); } //------------------------------------------------------------------------------ @@ -180,7 +195,7 @@ vtkIdType vtkAbstractCellLocator::FindClosestPointWithinRadius(double vtkNotUsed int& vtkNotUsed(inside)) { vtkErrorMacro(<< "The locator class - " << this->GetClassName() - << " does not yet support FindClosestPoint"); + << " does not yet support FindClosestPointWithinRadius"); return 0; } @@ -193,11 +208,18 @@ void vtkAbstractCellLocator::FindCellsWithinBounds( } //------------------------------------------------------------------------------ -void vtkAbstractCellLocator::FindCellsAlongLine(const double vtkNotUsed(p1)[3], - const double vtkNotUsed(p2)[3], double vtkNotUsed(tolerance), vtkIdList* vtkNotUsed(cells)) +void vtkAbstractCellLocator::FindCellsAlongLine( + const double p1[3], const double p2[3], double tolerance, vtkIdList* cells) +{ + this->IntersectWithLine(p1, p2, tolerance, nullptr, cells, nullptr); +} + +//------------------------------------------------------------------------------ +void vtkAbstractCellLocator::FindCellsAlongPlane(const double vtkNotUsed(o)[3], + const double vtkNotUsed(n)[3], double vtkNotUsed(tolerance), vtkIdList* vtkNotUsed(cells)) { vtkErrorMacro(<< "The locator " << this->GetClassName() - << " does not yet support FindCellsAlongLine"); + << " does not yet support FindCellsAlongPlane"); } //------------------------------------------------------------------------------ @@ -252,6 +274,19 @@ bool vtkAbstractCellLocator::InsideCellBounds(double x[3], vtkIdType cell_ID) } } +//------------------------------------------------------------------------------ +void vtkAbstractCellLocator::GetCellBounds(vtkIdType cellId, double*& cellBoundsPtr) +{ + if (this->CacheCellBounds) + { + cellBoundsPtr = this->CellBounds[cellId]; + } + else + { + this->DataSet->GetCellBounds(cellId, cellBoundsPtr); + } +} + //------------------------------------------------------------------------------ void vtkAbstractCellLocator::PrintSelf(ostream& os, vtkIndent indent) { diff --git a/Common/DataModel/vtkAbstractCellLocator.h b/Common/DataModel/vtkAbstractCellLocator.h index 2f886c30259d..7beb4986a4b7 100644 --- a/Common/DataModel/vtkAbstractCellLocator.h +++ b/Common/DataModel/vtkAbstractCellLocator.h @@ -27,6 +27,7 @@ * using vtkAbstractCellLocator::IntersectWithLine; * using vtkAbstractCellLocator::FindClosestPoint; * using vtkAbstractCellLocator::FindClosestPointWithinRadius; + * using vtkAbstractCellLocator::FindCell; * \endverbatim * * @sa @@ -38,6 +39,7 @@ #include "vtkCommonDataModelModule.h" // For export macro #include "vtkLocator.h" +#include "vtkNew.h" // For vtkNew #include // For Weights @@ -115,6 +117,8 @@ public: /** * Return intersection point (if any) of finite line with cells contained * in cell locator. See vtkCell.h parameters documentation. + * + * THIS FUNCTION IS NOT THREAD SAFE. */ virtual int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId); @@ -122,37 +126,76 @@ public: /** * Return intersection point (if any) AND the cell which was intersected by * the finite line. + * + * THIS FUNCTION IS NOT THREAD SAFE. */ virtual int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId); /** * Return intersection point (if any) AND the cell which was intersected by - * the finite line. The cell is returned as a cell id and as a generic - * cell. + * the finite line. The cell is returned as a cell id and as a generic cell. + * + * This function takes in a vtkGenericCell to avoid using the internal vtkGenericCell. + * + * THIS FUNCTION IS THREAD SAFE. */ virtual int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell); /** * Take the passed line segment and intersect it with the data set. - * This method assumes that the data set is a vtkPolyData that describes - * a closed surface, and the intersection points that are returned in - * 'points' alternate between entrance points and exit points. * The return value of the function is 0 if no intersections were found, * -1 if point 'a0' lies inside the closed surface, or +1 if point 'a0' - * lies outside the closed surface. + * lies outside the closed surface. This method assumes that the data set + * is a vtkPolyData that describes a closed surface, and the intersection + * points that are returned in 'points' alternate between entrance points and exit points. + * * Either 'points' or 'cellIds' can be set to nullptr if you don't want - * to receive that information. This method is currently only implemented - * in vtkOBBTree. + * to receive that information. + * + * This method is only implemented in vtkOBBTree. + * + * THIS FUNCTION IS THREAD SAFE. */ virtual int IntersectWithLine( const double p1[3], const double p2[3], vtkPoints* points, vtkIdList* cellIds); + /** + * Take the passed line segment and intersect it with the data set. + * The return value of the function is 0 if no intersections were found. + * For each intersection with a cell, the points and cellIds have the relevant information + * added sorted by t. If points or cellIds are nullptr pointers, then no information is + * generated for that list. + * + * THIS FUNCTION IS NOT THREAD SAFE. + */ + virtual int IntersectWithLine(const double p1[3], const double p2[3], const double tol, + vtkPoints* points, vtkIdList* cellIds); + + /** + * Take the passed line segment and intersect it with the data set. + * The return value of the function is 0 if no intersections were found. + * For each intersection with the bounds of a cell or with a cell (if a cell is provided), + * the points and cellIds have the relevant information added sorted by t. + * If points or cellIds are nullptr pointers, then no information is generated for that list. + * + * This function takes in a vtkGenericCell to avoid using the internal vtkGenericCell. + * + * THIS FUNCTION IS THREAD SAFE. + */ + virtual int IntersectWithLine(const double p1[3], const double p2[3], const double tol, + vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell); + /** * Return the closest point and the cell which is closest to the point x. * The closest point is somewhere on a cell, it need not be one of the * vertices of the cell. + * + * A vtkAbstractCellLocator subclass needs to implement FindClosestPointWithinRadius + * which is used internally to implement FindClosestPoint. + * + * THIS FUNCTION IS NOT THREAD SAFE. */ virtual void FindClosestPoint( const double x[3], double closestPoint[3], vtkIdType& cellId, int& subId, double& dist2); @@ -160,13 +203,14 @@ public: /** * Return the closest point and the cell which is closest to the point x. * The closest point is somewhere on a cell, it need not be one of the - * vertices of the cell. This version takes in a vtkGenericCell - * to avoid allocating and deallocating the cell. This is much faster than - * the version which does not take a *cell, especially when this function is - * called many times in a row such as by a for loop, where the allocation and - * deallocation can be done only once outside the for loop. If a cell is - * found, "cell" contains the points and ptIds for the cell "cellId" upon - * exit. + * vertices of the cell. + * + * A vtkAbstractCellLocator subclass needs to implement FindClosestPointWithinRadius + * which is used internally to implement FindClosestPoint. + * + * This function takes in a vtkGenericCell to avoid using the internal vtkGenericCell. + * + * THIS FUNCTION IS THREAD SAFE. */ virtual void FindClosestPoint(const double x[3], double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2); @@ -178,6 +222,8 @@ public: * a point is found within the specified radius. If there are no cells within * the specified radius, the method returns 0 and the values of closestPoint, * cellId, subId, and dist2 are undefined. + * + * THIS FUNCTION IS NOT THREAD SAFE. */ virtual vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkIdType& cellId, int& subId, double& dist2); @@ -185,16 +231,14 @@ public: /** * Return the closest point within a specified radius and the cell which is * closest to the point x. The closest point is somewhere on a cell, it - * need not be one of the vertices of the cell. This method returns 1 if a - * point is found within the specified radius. If there are no cells within - * the specified radius, the method returns 0 and the values of - * closestPoint, cellId, subId, and dist2 are undefined. This version takes - * in a vtkGenericCell to avoid allocating and deallocating the cell. This - * is much faster than the version which does not take a *cell, especially - * when this function is called many times in a row such as by a for loop, - * where the allocation and deallocation can be done only once outside the - * for loop. If a closest point is found, "cell" contains the points and - * ptIds for the cell "cellId" upon exit. + * need not be one of the vertices of the cell. This method returns 1 if + * a point is found within the specified radius. If there are no cells within + * the specified radius, the method returns 0 and the values of closestPoint, + * cellId, subId, and dist2 are undefined. + * + * This function takes in a vtkGenericCell to avoid using the internal vtkGenericCell. + * + * THIS FUNCTION IS THREAD SAFE. */ virtual vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2); @@ -205,41 +249,56 @@ public: * need not be one of the vertices of the cell. This method returns 1 if a * point is found within the specified radius. If there are no cells within * the specified radius, the method returns 0 and the values of - * closestPoint, cellId, subId, and dist2 are undefined. This version takes - * in a vtkGenericCell to avoid allocating and deallocating the cell. This - * is much faster than the version which does not take a *cell, especially - * when this function is called many times in a row such as by a for loop, - * where the allocation and dealloction can be done only once outside the - * for loop. If a closest point is found, "cell" contains the points and - * ptIds for the cell "cellId" upon exit. If a closest point is found, - * inside returns the return value of the EvaluatePosition call to the - * closest cell; inside(=1) or outside(=0). + * closestPoint, cellId, subId, and dist2 are undefined. If a closest point + * is found, inside returns the return value of the EvaluatePosition call to + * the closest cell; inside(=1) or outside(=0). + * + * This function takes in a vtkGenericCell to avoid using the internal vtkGenericCell. + * + * THIS FUNCTION IS THREAD SAFE. */ virtual vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside); /** * Return a list of unique cell ids inside of a given bounding box. The - * user must provide the vtkIdList to populate. This method returns data - * only after the locator has been built. + * user must provide the vtkIdList to populate. + * + * THIS FUNCTION IS THREAD SAFE. */ virtual void FindCellsWithinBounds(double* bbox, vtkIdList* cells); /** - * Given a finite line defined by the two points (p1,p2), return the list - * of unique cell ids in the buckets containing the line. It is possible - * that an empty cell list is returned. The user must provide the vtkIdList - * to populate. This method returns data only after the locator has been - * built. + * Take the passed line segment and intersect it with the data set. + * For each intersection with the bounds of a cell, the cellIds + * have the relevant information added sort by t. If cellIds is nullptr + * pointer, then no information is generated for that list. + * + * A vtkAbstractCellLocator subclass needs to implement IntersectWithLine that + * takes cells ids, which is used internally to implement FindCellsAlongLine. + * + * THIS FUNCTION IS THREAD SAFE. */ virtual void FindCellsAlongLine( const double p1[3], const double p2[3], double tolerance, vtkIdList* cells); + /** + * Given an unbounded plane defined by an origin o[3] and unit normal n[3], + * return the list of unique cell ids in the buckets containing the + * plane. It is possible that an empty cell list is returned. The user must + * provide the vtkIdList cell list to populate. This method returns data + * only after the locator has been built. + * + * THIS FUNCTION IS THREAD SAFE. + */ + virtual void FindCellsAlongPlane( + const double o[3], const double n[3], double tolerance, vtkIdList* cells); + /** * Returns the Id of the cell containing the point, * returns -1 if no cell found. This interface uses a tolerance of zero * - * @warning: This method is not thread safe! + * THIS FUNCTION IS NOT THREAD SAFE. */ virtual vtkIdType FindCell(double x[3]); @@ -248,6 +307,8 @@ public: * Find the cell containing a given point. returns -1 if no cell found * the cell parameters are copied into the supplied variables, a cell must * be provided to store the information. + * + * THIS FUNCTION IS THREAD SAFE. */ virtual vtkIdType FindCell( double x[3], double tol2, vtkGenericCell* GenCell, double pcoords[3], double* weights); @@ -289,7 +350,7 @@ protected: vtkTypeBool CacheCellBounds; vtkTypeBool LazyEvaluation; vtkTypeBool UseExistingSearchStructure; - vtkGenericCell* GenericCell; + vtkNew GenericCell; double (*CellBounds)[6]; /** @@ -299,6 +360,12 @@ protected: static bool IsInBounds(const double bounds[6], const double x[3], const double tol = 0.0); + /* + * This function should be used ONLY after the locator is built. + * cellBoundsPtr should be assigned to a double cellBounds[6] BEFORE calling this function. + */ + void GetCellBounds(vtkIdType cellId, double*& cellBoundsPtr); + /** * This array is resized so that it can fit points from the cell hosting the most in the input * data set. Resizing is done in `UpdateInternalWeights`. diff --git a/Common/DataModel/vtkCellLocator.cxx b/Common/DataModel/vtkCellLocator.cxx index 372af9a453ec..c530319b8d13 100644 --- a/Common/DataModel/vtkCellLocator.cxx +++ b/Common/DataModel/vtkCellLocator.cxx @@ -21,6 +21,7 @@ #include "vtkObjectFactory.h" #include "vtkPolyData.h" +#include #include vtkStandardNewMacro(vtkCellLocator); @@ -140,11 +141,25 @@ void vtkCellLocator::ComputeOctantBounds(double octantBounds[6], int i, int j, i octantBounds[5] = octantBounds[4] + H[2]; } +//------------------------------------------------------------------------------ +void vtkCellLocator::GetBucketIndices(const double x[3], int ijk[3]) +{ + ijk[0] = static_cast((x[0] - this->Bounds[0]) / this->H[0]); + ijk[1] = static_cast((x[1] - this->Bounds[2]) / this->H[1]); + ijk[2] = static_cast((x[2] - this->Bounds[4]) / this->H[2]); + + ijk[0] = + (ijk[0] < 0 ? 0 : (ijk[0] >= this->NumberOfDivisions ? this->NumberOfDivisions - 1 : ijk[0])); + ijk[1] = + (ijk[1] < 0 ? 0 : (ijk[1] >= this->NumberOfDivisions ? this->NumberOfDivisions - 1 : ijk[1])); + ijk[2] = + (ijk[2] < 0 ? 0 : (ijk[2] >= this->NumberOfDivisions ? this->NumberOfDivisions - 1 : ijk[2])); +} + //------------------------------------------------------------------------------ // Return intersection point (if any) AND the cell which was intersected by // finite line. -// -int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, +int vtkCellLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) { this->BuildLocatorIfNeeded(); @@ -153,227 +168,181 @@ int vtkCellLocator::IntersectWithLine(const double a0[3], const double a1[3], do // empty tree, most likely there are no cells in the input data set return 0; } - double origin[3]; - double direction1[3]; - double direction2[3]; - double direction3[3]; - double hitPosition[3]; - double hitCellBoundsPosition[3], cellBounds[6]; - double result; - double bounds2[6]; + double* bounds = this->Bounds; + double* h = this->H; + double t0, t1, x0[3], x1[3], tHitCell; + double hitCellBoundsPosition[3], cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; double octantBounds[6]; - int i, leafStart, prod, loop; - vtkIdType bestCellId = -1, cId; - int idx; - double tMax, dist[3]; - int npos[3]; - int pos[3]; - int bestDir; - double stopDist, currDist; - double deltaT, pDistance, minPDistance = 1.0e38; - double length, maxLength = 0.0; - - // convert the line into i,j,k coordinates - tMax = 0.0; - for (i = 0; i < 3; i++) - { - direction1[i] = a1[i] - a0[i]; - length = this->Bounds[2 * i + 1] - this->Bounds[2 * i]; - if (length > maxLength) - { - maxLength = length; - } - origin[i] = (a0[i] - this->Bounds[2 * i]) / length; - direction2[i] = direction1[i] / length; - - bounds2[2 * i] = 0.0; - bounds2[2 * i + 1] = 1.0; - tMax += direction2[i] * direction2[i]; - } - - tMax = std::sqrt(tMax); - - // create a parametric range around the tolerance - deltaT = tol / maxLength; + int prod = this->NumberOfDivisions * this->NumberOfDivisions; + vtkIdType cellIdBest = -1, cId, i, idx, numberOfCellsInBucket; + int ijk[3], ijkEnd[3]; + int plane0, plane1, subIdBest = -1, hitCellBounds; + double tBest = VTK_FLOAT_MAX, xBest[3], pCoordsBest[3], step[3], next[3], tMax[3], tDelta[3]; + double rayDir[3]; + vtkMath::Subtract(p2, p1, rayDir); + int leafStart = this->NumberOfOctants - + this->NumberOfDivisions * this->NumberOfDivisions * this->NumberOfDivisions; - stopDist = tMax * this->NumberOfDivisions; - for (i = 0; i < 3; i++) + // Make sure the bounding box of the locator is hit. Also, determine the + // entry and exit points into and out of the locator. This is used to + // determine the bins where the ray starts and ends. + cellId = -1; + subId = 0; + if (vtkBox::IntersectWithLine(bounds, p1, p2, t0, t1, x0, x1, plane0, plane1) == 0) { - direction3[i] = direction2[i] / tMax; + return 0; // No intersections possible, line is outside the locator } - if (vtkBox::IntersectBox(bounds2, origin, direction2, hitPosition, result)) - { - std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); + // Initialize intersection query array if necessary. This is done + // locally to ensure thread safety. + std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); - // start walking through the octants - prod = this->NumberOfDivisions * this->NumberOfDivisions; - leafStart = this->NumberOfOctants - this->NumberOfDivisions * prod; - bestCellId = -1; + // Get the i-j-k point of intersection and bin index. This is + // clamped to the boundary of the locator. + this->GetBucketIndices(x0, ijk); + this->GetBucketIndices(x1, ijkEnd); + idx = leafStart + ijk[0] + ijk[1] * this->NumberOfDivisions + ijk[2] * prod; - // set up curr and stop dist - currDist = 0; - for (i = 0; i < 3; i++) - { - currDist += (hitPosition[i] - origin[i]) * (hitPosition[i] - origin[i]); - } - currDist = std::sqrt(currDist) * this->NumberOfDivisions; + // Set up some traversal parameters for traversing through bins + step[0] = (rayDir[0] >= 0.0) ? 1.0 : -1.0; + step[1] = (rayDir[1] >= 0.0) ? 1.0 : -1.0; + step[2] = (rayDir[2] >= 0.0) ? 1.0 : -1.0; - // add one offset due to the problems around zero - for (loop = 0; loop < 3; loop++) - { - hitPosition[loop] = hitPosition[loop] * this->NumberOfDivisions + 1.0; - pos[loop] = static_cast(hitPosition[loop]); - // Adjust right boundary condition: if we intersect from the top, right, - // or back; then pos must be adjusted to a valid octant index - if (pos[loop] > this->NumberOfDivisions) - { - pos[loop] = this->NumberOfDivisions; - } - } + // If the ray is going in the negative direction, then the next voxel boundary + // is on the "-" direction so we stay in the current voxel. + next[0] = bounds[0] + h[0] * (rayDir[0] >= 0.0 ? (ijk[0] + step[0]) : ijk[0]); + next[1] = bounds[2] + h[1] * (rayDir[1] >= 0.0 ? (ijk[1] + step[1]) : ijk[1]); + next[2] = bounds[4] + h[2] * (rayDir[2] >= 0.0 ? (ijk[2] + step[2]) : ijk[2]); - idx = leafStart + pos[0] - 1 + (pos[1] - 1) * this->NumberOfDivisions + (pos[2] - 1) * prod; + tMax[0] = (rayDir[0] != 0.0) ? (next[0] - x0[0]) / rayDir[0] : VTK_FLOAT_MAX; + tMax[1] = (rayDir[1] != 0.0) ? (next[1] - x0[1]) / rayDir[1] : VTK_FLOAT_MAX; + tMax[2] = (rayDir[2] != 0.0) ? (next[2] - x0[2]) / rayDir[2] : VTK_FLOAT_MAX; - while ((bestCellId < 0) && (pos[0] > 0) && (pos[1] > 0) && (pos[2] > 0) && - (pos[0] <= this->NumberOfDivisions) && (pos[1] <= this->NumberOfDivisions) && - (pos[2] <= this->NumberOfDivisions) && (currDist < stopDist)) + tDelta[0] = (rayDir[0] != 0.0) ? (h[0] / rayDir[0]) * step[0] : VTK_FLOAT_MAX; + tDelta[1] = (rayDir[1] != 0.0) ? (h[1] / rayDir[1]) * step[1] : VTK_FLOAT_MAX; + tDelta[2] = (rayDir[2] != 0.0) ? (h[2] / rayDir[2]) * step[2] : VTK_FLOAT_MAX; + + for (cellIdBest = (-1); cellIdBest < 0;) + { + if (this->Tree[idx] && + (numberOfCellsInBucket = this->Tree[idx]->GetNumberOfIds()) > 0) // there are some cell here { - if (this->Tree[idx]) + this->ComputeOctantBounds(octantBounds, ijk[0], ijk[1], ijk[2]); + for (i = 0; i < numberOfCellsInBucket; ++i) { - this->ComputeOctantBounds(octantBounds, pos[0] - 1, pos[1] - 1, pos[2] - 1); - for (tMax = VTK_DOUBLE_MAX, cellId = 0; cellId < this->Tree[idx]->GetNumberOfIds(); - cellId++) + cId = this->Tree[idx]->GetId(i); + if (!cellHasBeenVisited[cId]) { - cId = this->Tree[idx]->GetId(cellId); - if (!cellHasBeenVisited[cId]) - { - cellHasBeenVisited[cId] = true; - int hitCellBounds = 0; + cellHasBeenVisited[cId] = true; - // check whether we intersect the cell bounds - if (this->CacheCellBounds) - { - hitCellBounds = vtkBox::IntersectBox( - this->CellBounds[cId], a0, direction1, hitCellBoundsPosition, result); - } - else - { - this->DataSet->GetCellBounds(cId, cellBounds); - hitCellBounds = - vtkBox::IntersectBox(cellBounds, a0, direction1, hitCellBoundsPosition, result); - } + // check whether we intersect the cell bounds + this->GetCellBounds(cId, cellBoundsPtr); + hitCellBounds = + vtkBox::IntersectBox(cellBoundsPtr, p1, rayDir, hitCellBoundsPosition, tHitCell, tol); - if (hitCellBounds) + if (hitCellBounds) + { + // now, do the expensive GetCell call and the expensive + // intersect with line call + this->DataSet->GetCell(cId, cell); + if (cell->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) { - // now, do the expensive GetCell call and the expensive - // intersect with line call - this->DataSet->GetCell(cId, cell); - if (cell->IntersectWithLine(a0, a1, tol, t, x, pcoords, subId)) + // Make sure that intersection occurs within this octant or else spurious cell + // intersections can occur behind this bin which are not the correct answer. + if (!vtkAbstractCellLocator::IsInBounds(octantBounds, x, tol)) { - if (!vtkAbstractCellLocator::IsInBounds(octantBounds, x, tol)) - { - cellHasBeenVisited[cId] = false; // mark the cell non-visited - } - else - { - if (t < (tMax + deltaT)) // it might be close - { - pDistance = cell->GetParametricDistance(pcoords); - if (pDistance < minPDistance || (pDistance == minPDistance && t < tMax)) - { - tMax = t; - minPDistance = pDistance; - bestCellId = cId; - } - } // intersection point is in current octant - } // if within current parametric range - } // if intersection - } // if (hitCellBounds) - } // if (!CellHasBeenVisited[cId]) - } + cellHasBeenVisited[cId] = false; // mark the cell non-visited + } + else + { + tBest = t; + xBest[0] = x[0]; + xBest[1] = x[1]; + xBest[2] = x[2]; + pCoordsBest[0] = pcoords[0]; + pCoordsBest[1] = pcoords[1]; + pCoordsBest[2] = pcoords[2]; + subIdBest = subId; + cellIdBest = cId; + } // intersection point is in current octant + } // if intersection + } // if (hitCellBounds) + } // if (!CellHasBeenVisited[cId]) } + } - // move to the next octant - tMax = VTK_DOUBLE_MAX; - bestDir = 0; - for (loop = 0; loop < 3; loop++) + // Exit before end of ray, saves a few cycles + if (cellIdBest >= 0) + { + break; + } + + // See if the traversal is complete (reached the end of the line). + if (ijk[0] == ijkEnd[0] && ijk[1] == ijkEnd[1] && ijk[2] == ijkEnd[2]) + { + break; + } + + // move to the next octant + // Advance to next voxel + if (tMax[0] < tMax[1]) + { + if (tMax[0] < tMax[2]) { - if (direction3[loop] > 0) - { - npos[loop] = pos[loop] + 1; - dist[loop] = (1.0 - hitPosition[loop] + pos[loop]) / direction3[loop]; - if (dist[loop] == 0) - { - dist[loop] = 1.0 / direction3[loop]; - } - if (dist[loop] < 0) - { - dist[loop] = 0; - } - if (dist[loop] < tMax) - { - bestDir = loop; - tMax = dist[loop]; - } - } - if (direction3[loop] < 0) - { - npos[loop] = pos[loop] - 1; - dist[loop] = (pos[loop] - hitPosition[loop]) / direction3[loop]; - if (dist[loop] == 0) - { - dist[loop] = -0.01 / direction3[loop]; - } - if (dist[loop] < 0) - { - dist[loop] = 0; - } - if (dist[loop] < tMax) - { - bestDir = loop; - tMax = dist[loop]; - } - } + ijk[0] += static_cast(step[0]); + tMax[0] += tDelta[0]; } - // update our position - for (loop = 0; loop < 3; loop++) + else + { + ijk[2] += static_cast(step[2]); + tMax[2] += tDelta[2]; + } + } + else + { + if (tMax[1] < tMax[2]) { - hitPosition[loop] += dist[bestDir] * direction3[loop]; + ijk[1] += static_cast(step[1]); + tMax[1] += tDelta[1]; } - currDist += dist[bestDir]; - // now make the move, find the smallest distance - // only cross one boundary at a time - pos[bestDir] = npos[bestDir]; + else + { + ijk[2] += static_cast(step[2]); + tMax[2] += tDelta[2]; + } + } - idx = leafStart + pos[0] - 1 + (pos[1] - 1) * this->NumberOfDivisions + (pos[2] - 1) * prod; + if (ijk[0] < 0 || ijk[0] >= this->NumberOfDivisions || ijk[1] < 0 || + ijk[1] >= this->NumberOfDivisions || ijk[2] < 0 || ijk[2] >= this->NumberOfDivisions) + { + break; + } + else + { + idx = leafStart + ijk[0] + ijk[1] * this->NumberOfDivisions + ijk[2] * prod; } - } // if (vtkBox::IntersectBox(...)) + } - if (bestCellId >= 0) + // If a cell has been intersected, recover the information and return. + if (cellIdBest >= 0) { - this->DataSet->GetCell(bestCellId, cell); - cell->IntersectWithLine(a0, a1, tol, t, x, pcoords, subId); - - // store the best cell id in the return "parameter" - cellId = bestCellId; + this->DataSet->GetCell(cellIdBest, cell); + t = tBest; + x[0] = xBest[0]; + x[1] = xBest[1]; + x[2] = xBest[2]; + pcoords[0] = pCoordsBest[0]; + pcoords[1] = pCoordsBest[1]; + pcoords[2] = pCoordsBest[2]; + subId = subIdBest; + cellId = cellIdBest; return 1; } return 0; } -//------------------------------------------------------------------------------ -// Return closest point (if any) AND the cell on which this closest point lies -void vtkCellLocator::FindClosestPoint(const double x[3], double closestPoint[3], - vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2) -{ - int inside; - double radius = vtkMath::Inf(); - double point[3] = { x[0], x[1], x[2] }; - this->FindClosestPointWithinRadius( - point, radius, closestPoint, cell, cellId, subId, dist2, inside); -} - //------------------------------------------------------------------------------ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, @@ -401,7 +370,8 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu std::vector weights(8); double distance2ToBucket; - double distance2ToCellBounds, cellBounds[6], currentRadius; + double distance2ToCellBounds, cellBounds[6], *cellBoundsPtr, currentRadius; + cellBoundsPtr = cellBounds; double distance2ToDataBounds, maxDistance; int ii, radiusLevels[3], radiusLevel, prevMinLevel[3], prevMaxLevel[3]; @@ -421,20 +391,7 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu double refinedRadius2 = radius2; // Find bucket point is in. - // - for (j = 0; j < 3; j++) - { - ijk[j] = static_cast((x[j] - this->Bounds[2 * j]) / this->H[j]); - - if (ijk[j] < 0) - { - ijk[j] = 0; - } - else if (ijk[j] >= this->NumberOfDivisions) - { - ijk[j] = this->NumberOfDivisions - 1; - } - } + this->GetBucketIndices(x, ijk); // Start by searching the bucket that the point is in. // @@ -446,48 +403,43 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu { // get the cell cellId = cellIds->GetId(j); - if (!cellHasBeenVisited[cellId]) + // skip if it has been visited + if (cellHasBeenVisited[cellId]) { - cellHasBeenVisited[cellId] = true; + continue; + } + cellHasBeenVisited[cellId] = true; - // check whether we could be close enough to the cell by - // testing the cell bounds - if (this->CacheCellBounds) - { - distance2ToCellBounds = this->Distance2ToBounds(x, this->CellBounds[cellId]); - } - else + // check whether we could be close enough to the cell by + this->GetCellBounds(cellId, cellBoundsPtr); + // testing the cell bounds + distance2ToCellBounds = this->Distance2ToBounds(x, cellBoundsPtr); + + if (distance2ToCellBounds < refinedRadius2) + { + this->DataSet->GetCell(cellId, cell); + + // make sure we have enough storage space for the weights + nPoints = static_cast(cell->GetPointIds()->GetNumberOfIds()); + if (weights.size() < nPoints) { - this->DataSet->GetCellBounds(cellId, cellBounds); - distance2ToCellBounds = this->Distance2ToBounds(x, cellBounds); + weights.resize(2 * nPoints); } - if (distance2ToCellBounds < refinedRadius2) + // evaluate the position to find the closest point + tmpInside = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights.data()); + if (dist2 < minDist2) { - this->DataSet->GetCell(cellId, cell); - - // make sure we have enough storage space for the weights - nPoints = static_cast(cell->GetPointIds()->GetNumberOfIds()); - if (weights.size() < nPoints) - { - weights.resize(2 * nPoints); - } - - // evaluate the position to find the closest point - tmpInside = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights.data()); - if (dist2 < minDist2) - { - inside = tmpInside; - closestCell = cellId; - closestSubCell = subId; - minDist2 = dist2; - cachedPoint[0] = point[0]; - cachedPoint[1] = point[1]; - cachedPoint[2] = point[2]; - refinedRadius2 = dist2; - } + inside = tmpInside; + closestCell = cellId; + closestSubCell = subId; + minDist2 = dist2; + cachedPoint[0] = point[0]; + cachedPoint[1] = point[1]; + cachedPoint[2] = point[2]; + refinedRadius2 = dist2; } - } // if (CellHasBeenVisited[cellId]) + } } } @@ -568,54 +520,49 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu { // get the cell cellId = cellIds->GetId(j); - if (!cellHasBeenVisited[cellId]) + // skip if it has been visited + if (cellHasBeenVisited[cellId]) { - cellHasBeenVisited[cellId] = true; + continue; + } + cellHasBeenVisited[cellId] = true; - // check whether we could be close enough to the cell by - // testing the cell bounds - if (this->CacheCellBounds) - { - distance2ToCellBounds = this->Distance2ToBounds(x, this->CellBounds[cellId]); - } - else - { - this->DataSet->GetCellBounds(cellId, cellBounds); - distance2ToCellBounds = this->Distance2ToBounds(x, cellBounds); - } + // check whether we could be close enough to the cell by + this->GetCellBounds(cellId, cellBoundsPtr); + // testing the cell bounds + distance2ToCellBounds = this->Distance2ToBounds(x, cellBoundsPtr); - if (distance2ToCellBounds < refinedRadius2) - { - this->DataSet->GetCell(cellId, cell); + if (distance2ToCellBounds < refinedRadius2) + { + this->DataSet->GetCell(cellId, cell); - // make sure we have enough storage space for the weights - nPoints = static_cast(cell->GetPointIds()->GetNumberOfIds()); - if (weights.size() < nPoints) - { - weights.resize(2 * nPoints); - } + // make sure we have enough storage space for the weights + nPoints = static_cast(cell->GetPointIds()->GetNumberOfIds()); + if (weights.size() < nPoints) + { + weights.resize(2 * nPoints); + } - // evaluate the position to find the closest point - tmpInside = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights.data()); + // evaluate the position to find the closest point + tmpInside = cell->EvaluatePosition(x, point, subId, pcoords, dist2, weights.data()); - if (dist2 < minDist2) - { - inside = tmpInside; - closestCell = cellId; - closestSubCell = subId; - minDist2 = dist2; - cachedPoint[0] = point[0]; - cachedPoint[1] = point[1]; - cachedPoint[2] = point[2]; - refinedRadius = std::sqrt(minDist2); - refinedRadius2 = minDist2; - } - } // if point close enough to cell bounds - } // if cell has not been visited - } // for each cell in bucket - } // if bucket is within the current best distance - } // if cells in bucket - } // for each overlapping bucket + if (dist2 < minDist2) + { + inside = tmpInside; + closestCell = cellId; + closestSubCell = subId; + minDist2 = dist2; + cachedPoint[0] = point[0]; + cachedPoint[1] = point[1]; + cachedPoint[2] = point[2]; + refinedRadius = std::sqrt(minDist2); + refinedRadius2 = minDist2; + } + } // if point close enough to cell bounds + } // for each cell in bucket + } // if bucket is within the current best distance + } // if cells in bucket + } // for each overlapping bucket // don't want to checker a smaller radius than we just checked so update // ii appropriately @@ -651,7 +598,6 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu // These indices must be offset by number of octants before the leaf node // layer before they can be used. Only buckets that have cells are placed // in the bucket list. -// void vtkCellLocator::GetOverlappingBuckets(vtkNeighborCells& buckets, const double x[3], double dist, int prevMinLevel[3], int prevMaxLevel[3]) { @@ -821,7 +767,8 @@ void vtkCellLocator::ForceBuildLocator() // The result is directly addressable and of uniform subdivision. void vtkCellLocator::BuildLocatorInternal() { - double length, cellBounds[6], *boundsPtr; + double length, cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; vtkIdType numCells; int ndivs, product; int i, j, k, ijkMin[3], ijkMax[3]; @@ -842,11 +789,7 @@ void vtkCellLocator::BuildLocatorInternal() this->DataSet->ComputeBounds(); // Make sure the appropriate data is available - if (this->Tree) - { - this->FreeSearchStructure(); - } - this->FreeCellBounds(); + this->FreeSearchStructure(); // Size the root cell. Initialize cell data structure, compute // level and divisions. @@ -888,11 +831,11 @@ void vtkCellLocator::BuildLocatorInternal() if (this->CacheCellBounds) { + this->FreeCellBounds(); this->StoreCellBounds(); } // Compute width of leaf octant in three directions - // for (i = 0; i < 3; i++) { this->H[i] = (this->Bounds[2 * i + 1] - this->Bounds[2 * i]) / ndivs; @@ -903,24 +846,17 @@ void vtkCellLocator::BuildLocatorInternal() // falls within octant. parentOffset = numOctants - (ndivs * ndivs * ndivs); product = ndivs * ndivs; - boundsPtr = cellBounds; for (cellId = 0; cellId < numCells; cellId++) { - if (this->CellBounds) - { - boundsPtr = this->CellBounds[cellId]; - } - else - { - this->DataSet->GetCellBounds(cellId, cellBounds); - } + this->GetCellBounds(cellId, cellBoundsPtr); // find min/max locations of bounding box for (i = 0; i < 3; i++) { - ijkMin[i] = static_cast((boundsPtr[2 * i] - this->Bounds[2 * i] - hTol[i]) / this->H[i]); + ijkMin[i] = + static_cast((cellBoundsPtr[2 * i] - this->Bounds[2 * i] - hTol[i]) / this->H[i]); ijkMax[i] = - static_cast((boundsPtr[2 * i + 1] - this->Bounds[2 * i] + hTol[i]) / this->H[i]); + static_cast((cellBoundsPtr[2 * i + 1] - this->Bounds[2 * i] + hTol[i]) / this->H[i]); if (ijkMin[i] < 0) { @@ -1215,14 +1151,6 @@ double vtkCellLocator::Distance2ToBounds(const double x[3], double bounds[6]) return vtkMath::SquaredNorm(deltas); } -//------------------------------------------------------------------------------ -vtkIdType vtkCellLocator::FindCell( - double x[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) -{ - int subId; - return this->FindCell(x, tol2, cell, subId, pcoords, weights); -} - //------------------------------------------------------------------------------ vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) @@ -1242,36 +1170,23 @@ vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGene vtkIdList* cellIds; int ijk[3]; double dist2; + vtkIdType idx, cellId; int leafStart = this->NumberOfOctants - this->NumberOfDivisions * this->NumberOfDivisions * this->NumberOfDivisions; // Find bucket point is in. - // - for (int j = 0; j < 3; j++) - { - ijk[j] = static_cast((x[j] - this->Bounds[2 * j]) / this->H[j]); - - if (ijk[j] < 0) - { - ijk[j] = 0; - } - else if (ijk[j] >= this->NumberOfDivisions) - { - ijk[j] = this->NumberOfDivisions - 1; - } - } + this->GetBucketIndices(x, ijk); // Search the bucket that the point is in. - // if ((cellIds = this->Tree[leafStart + ijk[0] + ijk[1] * this->NumberOfDivisions + ijk[2] * this->NumberOfDivisions * this->NumberOfDivisions]) != nullptr) { // query each cell - for (int j = 0; j < cellIds->GetNumberOfIds(); j++) + for (idx = 0; idx < cellIds->GetNumberOfIds(); ++idx) { // get the cell - vtkIdType cellId = cellIds->GetId(j); + cellId = cellIds->GetId(idx); // check whether we could be close enough to the cell by // testing the cell bounds if (this->InsideCellBounds(x, cellId)) @@ -1313,30 +1228,15 @@ void vtkCellLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) int ijk[2][3]; // Find bucket the points are in - // - int i, j, k; - for (i = 0; i < 2; i++) - { - for (j = 0; j < 3; j++) - { - ijk[i][j] = static_cast((p[i][j] - this->Bounds[2 * j]) / this->H[j]); - - if (ijk[i][j] < 0) - { - ijk[i][j] = 0; - } - else if (ijk[i][j] >= this->NumberOfDivisions) - { - ijk[i][j] = this->NumberOfDivisions - 1; - } - } - } + this->GetBucketIndices(p1, ijk[0]); + this->GetBucketIndices(p2, ijk[1]); // Now loop over block to load in ids int leafStart = this->NumberOfOctants - this->NumberOfDivisions * this->NumberOfDivisions * this->NumberOfDivisions; vtkIdList* cellIds; vtkIdType idx; + int i, j, k; for (k = ijk[0][2]; k <= ijk[1][2]; k++) { for (j = ijk[0][1]; j <= ijk[1][1]; j++) @@ -1357,182 +1257,214 @@ void vtkCellLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) } //------------------------------------------------------------------------------ -void vtkCellLocator::FindCellsAlongLine( - const double p1[3], const double p2[3], double vtkNotUsed(tol), vtkIdList* cells) +struct IntersectionInfo +{ + vtkIdType CellId; + std::array IntersectionPoint; + double T; + + IntersectionInfo(vtkIdType cellId, double x[3], double t) + : CellId(cellId) + , IntersectionPoint({ x[0], x[1], x[2] }) + , T(t) + { + } +}; + +//------------------------------------------------------------------------------ +int vtkCellLocator::IntersectWithLine(const double p1[3], const double p2[3], const double tol, + vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) { this->BuildLocatorIfNeeded(); if (this->Tree == nullptr) { // empty tree, most likely there are no cells in the input data set - return; + return 0; } - cells->Reset(); - - double origin[3]; - double direction1[3]; - double direction2[3]; - double direction3[3]; - double hitPosition[3]; - double hitCellBoundsPosition[3], cellBounds[6]; - int hitCellBounds; - double result; - double bounds2[6]; - int i, leafStart, prod, loop; - vtkIdType cellId, cId; - int idx; - double tMax, dist[3]; - int npos[3]; - int pos[3]; - int bestDir; - double stopDist, currDist; - double length, maxLength = 0.0; - - // convert the line into i,j,k coordinates - tMax = 0.0; - for (i = 0; i < 3; i++) + // Initialize the list of points/cells + if (points) { - direction1[i] = p2[i] - p1[i]; - length = this->Bounds[2 * i + 1] - this->Bounds[2 * i]; - if (length > maxLength) - { - maxLength = length; - } - origin[i] = (p1[i] - this->Bounds[2 * i]) / length; - direction2[i] = direction1[i] / length; - - bounds2[2 * i] = 0.0; - bounds2[2 * i + 1] = 1.0; - tMax += direction2[i] * direction2[i]; + points->Reset(); } - tMax = std::sqrt(tMax); - - // create a parametric range around the tolerance - stopDist = tMax * this->NumberOfDivisions; - for (i = 0; i < 3; i++) + if (cellIds) { - direction3[i] = direction2[i] / tMax; + cellIds->Reset(); } + double* bounds = this->Bounds; + double* h = this->H; + double t0, t1, x0[3], x1[3], tHitCell; + double hitCellBoundsPosition[3], cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; + double octantBounds[6]; + int prod = this->NumberOfDivisions * this->NumberOfDivisions; + vtkIdType cellIdBest = -1, cId, i, idx, numberOfCellsInBucket; + int ijk[3], ijkEnd[3]; + int plane0, plane1, hitCellBounds, subId; + double step[3], next[3], tMax[3], tDelta[3]; + double rayDir[3]; + vtkMath::Subtract(p2, p1, rayDir); + double t, x[3], pcoords[3]; + int leafStart = this->NumberOfOctants - + this->NumberOfDivisions * this->NumberOfDivisions * this->NumberOfDivisions; - if (vtkBox::IntersectBox(bounds2, origin, direction2, hitPosition, result)) + // Make sure the bounding box of the locator is hit. Also, determine the + // entry and exit points into and out of the locator. This is used to + // determine the bins where the ray starts and ends. + if (vtkBox::IntersectWithLine(bounds, p1, p2, t0, t1, x0, x1, plane0, plane1) == 0) { - std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); + return 0; // No intersections possible, line is outside the locator + } - // start walking through the octants - prod = this->NumberOfDivisions * this->NumberOfDivisions; - leafStart = this->NumberOfOctants - this->NumberOfDivisions * prod; + // Initialize intersection query array if necessary. This is done + // locally to ensure thread safety. + std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); - // set up curr and stop dist - currDist = 0; - for (i = 0; i < 3; i++) - { - currDist += (hitPosition[i] - origin[i]) * (hitPosition[i] - origin[i]); - } - currDist = std::sqrt(currDist) * this->NumberOfDivisions; + // Get the i-j-k point of intersection and bin index. This is + // clamped to the boundary of the locator. + this->GetBucketIndices(x0, ijk); + this->GetBucketIndices(x1, ijkEnd); + idx = leafStart + ijk[0] + ijk[1] * this->NumberOfDivisions + ijk[2] * prod; - // add one offset due to the problems around zero - for (loop = 0; loop < 3; loop++) - { - hitPosition[loop] = hitPosition[loop] * this->NumberOfDivisions + 1.0; - pos[loop] = static_cast(hitPosition[loop]); - // Adjust right boundary condition: if we intersect from the top, right, - // or back; then pos must be adjusted to a valid octant index - if (pos[loop] > this->NumberOfDivisions) - { - pos[loop] = this->NumberOfDivisions; - } - } + // Set up some traversal parameters for traversing through bins + step[0] = (rayDir[0] >= 0.0) ? 1.0 : -1.0; + step[1] = (rayDir[1] >= 0.0) ? 1.0 : -1.0; + step[2] = (rayDir[2] >= 0.0) ? 1.0 : -1.0; + + // If the ray is going in the negative direction, then the next voxel boundary + // is on the "-" direction so we stay in the current voxel. + next[0] = bounds[0] + h[0] * (rayDir[0] >= 0.0 ? (ijk[0] + step[0]) : ijk[0]); + next[1] = bounds[2] + h[1] * (rayDir[1] >= 0.0 ? (ijk[1] + step[1]) : ijk[1]); + next[2] = bounds[4] + h[2] * (rayDir[2] >= 0.0 ? (ijk[2] + step[2]) : ijk[2]); + + tMax[0] = (rayDir[0] != 0.0) ? (next[0] - x0[0]) / rayDir[0] : VTK_FLOAT_MAX; + tMax[1] = (rayDir[1] != 0.0) ? (next[1] - x0[1]) / rayDir[1] : VTK_FLOAT_MAX; + tMax[2] = (rayDir[2] != 0.0) ? (next[2] - x0[2]) / rayDir[2] : VTK_FLOAT_MAX; + + tDelta[0] = (rayDir[0] != 0.0) ? (h[0] / rayDir[0]) * step[0] : VTK_FLOAT_MAX; + tDelta[1] = (rayDir[1] != 0.0) ? (h[1] / rayDir[1]) * step[1] : VTK_FLOAT_MAX; + tDelta[2] = (rayDir[2] != 0.0) ? (h[2] / rayDir[2]) * step[2] : VTK_FLOAT_MAX; - idx = leafStart + pos[0] - 1 + (pos[1] - 1) * this->NumberOfDivisions + (pos[2] - 1) * prod; + // we will sort intersections by t, so keep track using these lists + std::vector cellIntersections; - while ((pos[0] > 0) && (pos[1] > 0) && (pos[2] > 0) && (pos[0] <= this->NumberOfDivisions) && - (pos[1] <= this->NumberOfDivisions) && (pos[2] <= this->NumberOfDivisions) && - (currDist < stopDist)) + for (cellIdBest = (-1); cellIdBest < 0;) + { + if (this->Tree[idx] && + (numberOfCellsInBucket = this->Tree[idx]->GetNumberOfIds()) > 0) // there are some cell here { - if (this->Tree[idx]) + this->ComputeOctantBounds(octantBounds, ijk[0], ijk[1], ijk[2]); + for (i = 0; i < numberOfCellsInBucket; ++i) { - for (cellId = 0; cellId < this->Tree[idx]->GetNumberOfIds(); cellId++) + cId = this->Tree[idx]->GetId(i); + if (!cellHasBeenVisited[cId]) { - cId = this->Tree[idx]->GetId(cellId); - if (!cellHasBeenVisited[cId]) - { - cellHasBeenVisited[cId] = true; + cellHasBeenVisited[cId] = true; + + // check whether we intersect the cell bounds + this->GetCellBounds(cId, cellBoundsPtr); + hitCellBounds = + vtkBox::IntersectBox(cellBoundsPtr, p1, rayDir, hitCellBoundsPosition, tHitCell, tol); - // check whether we intersect the cell bounds - if (this->CacheCellBounds) + if (hitCellBounds) + { + // Note because of cellHasBeenVisited[], we know this cId is unique + if (cell) { - hitCellBounds = vtkBox::IntersectBox( - this->CellBounds[cId], p1, direction1, hitCellBoundsPosition, result); + this->DataSet->GetCell(cId, cell); + if (cell->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) + { + // Make sure that intersection occurs within this octant or else spurious cell + // intersections can occur behind this bin which are not the correct answer. + if (!vtkAbstractCellLocator::IsInBounds(octantBounds, x, tol)) + { + cellHasBeenVisited[cId] = false; // mark the cell non-visited + } + else + { + cellIntersections.emplace_back(cId, x, t); + } + } } else { - this->DataSet->GetCellBounds(cId, cellBounds); - hitCellBounds = - vtkBox::IntersectBox(cellBounds, p1, direction1, hitCellBoundsPosition, result); + cellIntersections.emplace_back(cId, hitCellBoundsPosition, tHitCell); } - - if (hitCellBounds) - { - cells->InsertUniqueId(cId); - } // if (hitCellBounds) - } // if (!CellHasBeenVisited[cId]) - } + } // if (hitCellBounds) + } // if (!CellHasBeenVisited[cId]) } + } + + // See if the traversal is complete (reached the end of the line). + if (ijk[0] == ijkEnd[0] && ijk[1] == ijkEnd[1] && ijk[2] == ijkEnd[2]) + { + break; + } - // move to the next octant - tMax = VTK_DOUBLE_MAX; - bestDir = 0; - for (loop = 0; loop < 3; loop++) + // move to the next octant + // Advance to next voxel + if (tMax[0] < tMax[1]) + { + if (tMax[0] < tMax[2]) { - if (direction3[loop] > 0) - { - npos[loop] = pos[loop] + 1; - dist[loop] = (1.0 - hitPosition[loop] + pos[loop]) / direction3[loop]; - if (dist[loop] == 0) - { - dist[loop] = 1.0 / direction3[loop]; - } - if (dist[loop] < 0) - { - dist[loop] = 0; - } - if (dist[loop] < tMax) - { - bestDir = loop; - tMax = dist[loop]; - } - } - if (direction3[loop] < 0) - { - npos[loop] = pos[loop] - 1; - dist[loop] = (pos[loop] - hitPosition[loop]) / direction3[loop]; - if (dist[loop] == 0) - { - dist[loop] = -0.01 / direction3[loop]; - } - if (dist[loop] < 0) - { - dist[loop] = 0; - } - if (dist[loop] < tMax) - { - bestDir = loop; - tMax = dist[loop]; - } - } + ijk[0] += static_cast(step[0]); + tMax[0] += tDelta[0]; + } + else + { + ijk[2] += static_cast(step[2]); + tMax[2] += tDelta[2]; } - // update our position - for (loop = 0; loop < 3; loop++) + } + else + { + if (tMax[1] < tMax[2]) + { + ijk[1] += static_cast(step[1]); + tMax[1] += tDelta[1]; + } + else { - hitPosition[loop] += dist[bestDir] * direction3[loop]; + ijk[2] += static_cast(step[2]); + tMax[2] += tDelta[2]; } - currDist += dist[bestDir]; - // now make the move, find the smallest distance - // only cross one boundary at a time - pos[bestDir] = npos[bestDir]; + } + + if (ijk[0] < 0 || ijk[0] >= this->NumberOfDivisions || ijk[1] < 0 || + ijk[1] >= this->NumberOfDivisions || ijk[2] < 0 || ijk[2] >= this->NumberOfDivisions) + { + break; + } + else + { + idx = leafStart + ijk[0] + ijk[1] * this->NumberOfDivisions + ijk[2] * prod; + } + } - idx = leafStart + pos[0] - 1 + (pos[1] - 1) * this->NumberOfDivisions + (pos[2] - 1) * prod; + // if we had intersections, sort them by increasing t + if (!cellIntersections.empty()) + { + vtkIdType numIntersections = static_cast(cellIntersections.size()); + std::sort(cellIntersections.begin(), cellIntersections.end(), + [&](const IntersectionInfo& a, const IntersectionInfo b) { return a.T < b.T; }); + if (points) + { + points->SetNumberOfPoints(numIntersections); + for (i = 0; i < numIntersections; ++i) + { + points->SetPoint(i, cellIntersections[i].IntersectionPoint.data()); + } + } + if (cellIds) + { + cellIds->SetNumberOfIds(numIntersections); + for (i = 0; i < numIntersections; ++i) + { + cellIds->SetId(i, cellIntersections[i].CellId); + } } + return 1; } + return 0; } //------------------------------------------------------------------------------ diff --git a/Common/DataModel/vtkCellLocator.h b/Common/DataModel/vtkCellLocator.h index 9e90f892f296..7078378a7680 100644 --- a/Common/DataModel/vtkCellLocator.h +++ b/Common/DataModel/vtkCellLocator.h @@ -55,8 +55,13 @@ class vtkIntArray; class VTKCOMMONDATAMODEL_EXPORT vtkCellLocator : public vtkAbstractCellLocator { public: + ///@{ + /** + * Standard methods to print and obtain type-related information. + */ vtkTypeMacro(vtkCellLocator, vtkAbstractCellLocator); void PrintSelf(ostream& os, vtkIndent indent) override; + ///@} /** * Construct with automatic computation of divisions, averaging @@ -78,26 +83,39 @@ public: /** * Return intersection point (if any) AND the cell which was intersected by - * the finite line. The cell is returned as a cell id and as a generic - * cell. For other IntersectWithLine signatures, see - * vtkAbstractCellLocator. + * the finite line. The cell is returned as a cell id and as a generic cell. + * + * For other IntersectWithLine signatures, see vtkAbstractCellLocator. */ - int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], + int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; + /** + * Take the passed line segment and intersect it with the data set. + * The return value of the function is 0 if no intersections were found. + * For each intersection with the bounds of a cell or with a cell (if a cell is provided), + * the points and cellIds have the relevant information added sorted by t. + * If points or cellIds are nullptr pointers, then no information is generated for that list. + * + * For other IntersectWithLine signatures, see vtkAbstractCellLocator. + */ + int IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, + vtkIdList* cellIds, vtkGenericCell* cell) override; + /** * Return the closest point and the cell which is closest to the point x. * The closest point is somewhere on a cell, it need not be one of the - * vertices of the cell. This version takes in a vtkGenericCell - * to avoid allocating and deallocating the cell. This is much faster than - * the version which does not take a *cell, especially when this function is - * called many times in a row such as by a for loop, where the allocation and - * deallocation can be done only once outside the for loop. If a cell is - * found, "cell" contains the points and ptIds for the cell "cellId" upon - * exit. + * vertices of the cell. + * + * Reimplemented from vtkAbstractCellLocator to showcase that it's a supported function. + * + * For other FindClosestPoint signatures, see vtkAbstractCellLocator. */ void FindClosestPoint(const double x[3], double closestPoint[3], vtkGenericCell* cell, - vtkIdType& cellId, int& subId, double& dist2) override; + vtkIdType& cellId, int& subId, double& dist2) override + { + this->Superclass::FindClosestPoint(x, closestPoint, cell, cellId, subId, dist2); + } /** * Return the closest point within a specified radius and the cell which is @@ -105,59 +123,44 @@ public: * need not be one of the vertices of the cell. This method returns 1 if a * point is found within the specified radius. If there are no cells within * the specified radius, the method returns 0 and the values of - * closestPoint, cellId, subId, and dist2 are undefined. This version takes - * in a vtkGenericCell to avoid allocating and deallocating the cell. This - * is much faster than the version which does not take a *cell, especially - * when this function is called many times in a row such as by a for loop, - * where the allocation and dealloction can be done only once outside the - * for loop. If a closest point is found, "cell" contains the points and - * ptIds for the cell "cellId" upon exit. If a closest point is found, - * inside returns the return value of the EvaluatePosition call to the - * closest cell; inside(=1) or outside(=0). For other - * FindClosestPointWithinRadius signatures, see vtkAbstractCellLocator. + * closestPoint, cellId, subId, and dist2 are undefined. If a closest point + * is found, inside returns the return value of the EvaluatePosition call to + * the closest cell; inside(=1) or outside(=0). + * + * For other FindClosestPointWithinRadius signatures, see vtkAbstractCellLocator. */ vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; - /** - * Get the cells in a particular bucket. - */ - virtual vtkIdList* GetCells(int bucket); - - /** - * Return number of buckets available. Ensure that the locator has been - * built before attempting to access buckets (octants). - */ - virtual int GetNumberOfBuckets(void); - - ///@{ /** * Find the cell containing a given point. returns -1 if no cell found * the cell parameters are copied into the supplied variables, a cell must * be provided to store the information. + * + * For other FindCell signatures, see vtkAbstractCellLocator. */ - vtkIdType FindCell( - double x[3], double tol2, vtkGenericCell* GenCell, double pcoords[3], double* weights) override; - vtkIdType FindCell(double x[3], double tol2, vtkGenericCell* GenCell, int& subId, + vtkIdType FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* GenCell, int& subId, double pcoords[3], double* weights) override; - ///@} /** * Return a list of unique cell ids inside of a given bounding box. The - * user must provide the vtkIdList to populate. This method returns data - * only after the locator has been built. + * user must provide the vtkIdList to populate. */ void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; /** - * Given a finite line defined by the two points (p1,p2), return the list - * of unique cell ids in the buckets containing the line. It is possible - * that an empty cell list is returned. The user must provide the vtkIdList - * to populate. This method returns data only after the locator has been - * built. + * Take the passed line segment and intersect it with the data set. + * For each intersection with the bounds of a cell, the cellIds + * have the relevant information added sort by t. If cellIds is nullptr + * pointer, then no information is generated for that list. + * + * Reimplemented from vtkAbstractCellLocator to showcase that it's a supported function. */ void FindCellsAlongLine( - const double p1[3], const double p2[3], double tolerance, vtkIdList* cells) override; + const double p1[3], const double p2[3], double tolerance, vtkIdList* cellsIds) override + { + this->Superclass::FindCellsAlongLine(p1, p2, tolerance, cellsIds); + } ///@{ /** @@ -171,6 +174,17 @@ public: void GenerateRepresentation(int level, vtkPolyData* pd) override; ///@} + /** + * Get the cells in a particular bucket. + */ + virtual vtkIdList* GetCells(int bucket); + + /** + * Return number of buckets available. Ensure that the locator has been + * built before attempting to access buckets (octants). + */ + virtual int GetNumberOfBuckets(void); + protected: vtkCellLocator(); ~vtkCellLocator() override; @@ -196,6 +210,8 @@ protected: void GetOverlappingBuckets(vtkNeighborCells& buckets, const double x[3], double dist, int prevMinLevel[3], int prevMaxLevel[3]); + inline void GetBucketIndices(const double x[3], int ijk[3]); + double Distance2ToBucket(const double x[3], int nei[3]); double Distance2ToBounds(const double x[3], double bounds[6]); diff --git a/Common/DataModel/vtkCellTreeLocator.cxx b/Common/DataModel/vtkCellTreeLocator.cxx index 853e5d23474b..92b159ab4cee 100644 --- a/Common/DataModel/vtkCellTreeLocator.cxx +++ b/Common/DataModel/vtkCellTreeLocator.cxx @@ -12,9 +12,10 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ - #include "vtkCellTreeLocator.h" + #include "vtkBoundingBox.h" +#include "vtkBox.h" #include "vtkCellArray.h" #include "vtkGenericCell.h" #include "vtkIdListCollection.h" @@ -22,7 +23,9 @@ #include "vtkPointData.h" #include "vtkPolyData.h" #include "vtkSmartPointer.h" + #include +#include #include #include #include @@ -31,7 +34,6 @@ vtkStandardNewMacro(vtkCellTreeLocator); namespace { -const double EPSILON_ = 1E-8; enum { POS_X, @@ -57,43 +59,51 @@ inline void vtkCellTreeLocator::vtkCellTreeNode::MakeNode(unsigned int left, uns this->LeftMax = b[0]; this->RightMin = b[1]; } + //------------------------------------------------------------------------------ inline void vtkCellTreeLocator::vtkCellTreeNode::SetChildren(unsigned int left) { this->Index = GetDimension() | (left << 2); // In index 2 LSBs (Least Significant Bits) store the // dimension. MSBs store the position } + //------------------------------------------------------------------------------ inline bool vtkCellTreeLocator::vtkCellTreeNode::IsNode() const { return (this->Index & 3) != 3; // For a leaf 2 LSBs in index is 3 } + //------------------------------------------------------------------------------ inline unsigned int vtkCellTreeLocator::vtkCellTreeNode::GetLeftChildIndex() const { return (this->Index >> 2); } + //------------------------------------------------------------------------------ inline unsigned int vtkCellTreeLocator::vtkCellTreeNode::GetRightChildIndex() const { return (this->Index >> 2) + 1; // Right child node is adjacent to the Left child node in the data structure } + //------------------------------------------------------------------------------ inline unsigned int vtkCellTreeLocator::vtkCellTreeNode::GetDimension() const { return this->Index & 3; } + //------------------------------------------------------------------------------ inline const double& vtkCellTreeLocator::vtkCellTreeNode::GetLeftMaxValue() const { return this->LeftMax; } + //------------------------------------------------------------------------------ inline const double& vtkCellTreeLocator::vtkCellTreeNode::GetRightMinValue() const { return this->RightMin; } + //------------------------------------------------------------------------------ inline void vtkCellTreeLocator::vtkCellTreeNode::MakeLeaf(unsigned int start, unsigned int size) { @@ -101,23 +111,25 @@ inline void vtkCellTreeLocator::vtkCellTreeNode::MakeLeaf(unsigned int start, un this->Sz = size; this->St = start; } + //------------------------------------------------------------------------------ bool vtkCellTreeLocator::vtkCellTreeNode::IsLeaf() const { return this->Index == 3; } + //------------------------------------------------------------------------------ unsigned int vtkCellTreeLocator::vtkCellTreeNode::Start() const { return this->St; } + //------------------------------------------------------------------------------ unsigned int vtkCellTreeLocator::vtkCellTreeNode::Size() const { return this->Sz; } -//------------------------------------------------------------------------------ -// + //------------------------------------------------------------------------------ // This is a helper class to traverse the cell tree. This is derived from avtCellLocatorBIH class in // VisIT Member variables of this class starts with m_* @@ -194,11 +206,11 @@ public: } } }; + //------------------------------------------------------------------------------ // This class builds the CellTree according to the algorithm given in the paper. // This class is derived from the avtCellLocatorBIH class in VisIT. Member variables of this class // starts with m_* -//------------------------------------------------------------------------------ class vtkCellTreeBuilder { private: @@ -305,7 +317,7 @@ private: } PerCell* begin = &(this->m_pc[start]); - PerCell* end = &(this->m_pc[0]) + start + size; + PerCell* end = this->m_pc.data() + start + size; PerCell* mid = begin; const int nbuckets = 6; @@ -411,8 +423,8 @@ private: double clip[2] = { lmax[dim], rmin[dim] }; vtkCellTreeLocator::vtkCellTreeNode child[2]; - child[0].MakeLeaf(begin - &(this->m_pc[0]), mid - begin); - child[1].MakeLeaf(mid - &(this->m_pc[0]), end - mid); + child[0].MakeLeaf(begin - this->m_pc.data(), mid - begin); + child[1].MakeLeaf(mid - this->m_pc.data(), end - mid); this->m_nodes[index].MakeNode((int)m_nodes.size(), dim, clip); this->m_nodes.insert(m_nodes.end(), child, child + 2); @@ -430,44 +442,34 @@ public: void Build(vtkCellTreeLocator* ctl, vtkCellTreeLocator::vtkCellTree& ct, vtkDataSet* ds) { - const vtkIdType size = ds->GetNumberOfCells(); - double cellBounds[6]; - this->m_pc.resize(size); + const vtkIdType numberOfCells = ds->GetNumberOfCells(); + this->m_pc.resize(static_cast(numberOfCells)); double min[3] = { std::numeric_limits::max(), std::numeric_limits::max(), std::numeric_limits::max() }; - double max[3] = { -std::numeric_limits::max(), -std::numeric_limits::max(), -std::numeric_limits::max(), }; - for (vtkIdType i = 0; i < size; ++i) + double cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; + for (vtkIdType i = 0; i < numberOfCells; ++i) { this->m_pc[i].Ind = i; + ctl->GetCellBounds(i, cellBoundsPtr); - double* boundsPtr = cellBounds; - if (ctl->CellBounds) - { - boundsPtr = ctl->CellBounds[i]; - } - else - { - ds->GetCellBounds(i, boundsPtr); - } - - for (int d = 0; d < 3; ++d) + for (uint8_t d = 0; d < 3; ++d) { - this->m_pc[i].Min[d] = boundsPtr[2 * d + 0]; - this->m_pc[i].Max[d] = boundsPtr[2 * d + 1]; + this->m_pc[i].Min[d] = cellBoundsPtr[2 * d + 0]; + this->m_pc[i].Max[d] = cellBoundsPtr[2 * d + 1]; if (this->m_pc[i].Min[d] < min[d]) { min[d] = this->m_pc[i].Min[d]; } - - if (this->m_pc[i].Max[d] > max[d]) /// This can be m_pc[i].max[d] instead of min + if (this->m_pc[i].Max[d] > max[d]) { max[d] = this->m_pc[i].Max[d]; } @@ -482,7 +484,7 @@ public: ct.DataBBox[5] = max[2]; vtkCellTreeLocator::vtkCellTreeNode root; - root.MakeLeaf(0, size); + root.MakeLeaf(0, numberOfCells); this->m_nodes.push_back(root); Split(0, min, max); @@ -490,10 +492,7 @@ public: ct.Nodes.resize(this->m_nodes.size()); ct.Nodes[0] = this->m_nodes[0]; - std::vector::iterator ni = ct.Nodes.begin(); - std::vector::iterator nn = ct.Nodes.begin() + 1; - - for (; ni != ct.Nodes.end(); ++ni) + for (auto ni = ct.Nodes.begin(), nn = ct.Nodes.begin() + 1; ni != ct.Nodes.end(); ++ni) { if (ni->IsLeaf()) { @@ -502,19 +501,15 @@ public: *(nn++) = this->m_nodes[ni->GetLeftChildIndex()]; *(nn++) = this->m_nodes[ni->GetRightChildIndex()]; - ni->SetChildren(nn - ct.Nodes.begin() - 2); } // --- final - - ct.Leaves.resize(size); - - for (int i = 0; i < size; ++i) + ct.Leaves.resize(static_cast(numberOfCells)); + for (vtkIdType i = 0; i < numberOfCells; ++i) { ct.Leaves[i] = this->m_pc[i].Ind; } - this->m_pc.clear(); } @@ -525,11 +520,11 @@ public: }; //------------------------------------------------------------------------------ - typedef std::stack> nodeStack; +//------------------------------------------------------------------------------ vtkCellTreeLocator::vtkCellTreeLocator() { this->NumberOfCellsPerNode = 8; @@ -538,15 +533,10 @@ vtkCellTreeLocator::vtkCellTreeLocator() } //------------------------------------------------------------------------------ - vtkCellTreeLocator::~vtkCellTreeLocator() { - // make it obvious that this is calling a virtual function - // that IS NOT overridden by a derived class as the derived class - // no longer exists when this is called. really the user should - // call FreeSearchStructure before deleting the object - // but I'm not going to depend on that happening. - this->vtkCellTreeLocator::FreeSearchStructure(); + this->FreeSearchStructure(); + this->FreeCellBounds(); } //------------------------------------------------------------------------------ @@ -562,6 +552,7 @@ void vtkCellTreeLocator::BuildLocatorIfNeeded() } } } + //------------------------------------------------------------------------------ void vtkCellTreeLocator::ForceBuildLocator() { @@ -581,22 +572,21 @@ void vtkCellTreeLocator::ForceBuildLocator() } this->BuildLocatorInternal(); } + //------------------------------------------------------------------------------ void vtkCellTreeLocator::BuildLocatorInternal() { - this->FreeSearchStructure(); if (!this->DataSet || (this->DataSet->GetNumberOfCells() < 1)) { vtkErrorMacro(<< " No Cells in the data set\n"); return; } - this->DataSet->ComputeBounds(); - // + this->FreeSearchStructure(); if (this->CacheCellBounds) { + this->FreeCellBounds(); this->StoreCellBounds(); } - // this->Tree = new vtkCellTree; vtkCellTreeBuilder builder; builder.m_leafsize = this->NumberOfCellsPerNode; @@ -605,6 +595,7 @@ void vtkCellTreeLocator::BuildLocatorInternal() this->BuildTime.Modified(); } +//------------------------------------------------------------------------------ void vtkCellTreeLocator::BuildLocator() { if (this->LazyEvaluation) @@ -614,14 +605,6 @@ void vtkCellTreeLocator::BuildLocator() this->ForceBuildLocator(); } -//------------------------------------------------------------------------------ -vtkIdType vtkCellTreeLocator::FindCell( - double pos[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) -{ - int subId; - return this->FindCell(pos, tol2, cell, subId, pcoords, weights); -} - //------------------------------------------------------------------------------ vtkIdType vtkCellTreeLocator::FindCell( double pos[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) @@ -658,7 +641,6 @@ vtkIdType vtkCellTreeLocator::FindCell( } //------------------------------------------------------------------------------ - namespace { double _getMinDistPOS_X(const double origin[3], const double dir[3], const double B[6]) @@ -685,45 +667,37 @@ double _getMinDistNEG_Z(const double origin[3], const double dir[3], const doubl { return ((B[5] - origin[2]) / dir[2]); } - } -typedef std::pair Intersection; - +//------------------------------------------------------------------------------ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) -{ - int hit = this->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId, cellId); - if (hit) - { - this->DataSet->GetCell(cellId, cell); - } - return hit; -} - -int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, - double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellIds) { this->BuildLocatorIfNeeded(); vtkCellTreeNode *node, *nearNode, *farNode; - double ctmin, ctmax, tmin, tmax, _tmin, _tmax, tDist; - double ray_vec[3] = { p2[0] - p1[0], p2[1] - p1[1], p2[2] - p1[2] }; - - double cellBounds[6]; + double tmin, tmax, tDist, tHitCell, tBest = VTK_DOUBLE_MAX, xBest[3], pCoordsBest[3]; + double rayDir[3], x0[3], x1[3], hitCellBoundsPosition[3]; + int plane0, plane1, subIdBest = -1; + vtkMath::Subtract(p2, p1, rayDir); + double* bounds = this->Tree->DataBBox; + double cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; + vtkIdType cId, cellIdBest = -1; + cellId = -1; // Does ray pass through root BBox - tmin = 0; - tmax = 1; - - if (!this->RayMinMaxT(p1, ray_vec, tmin, tmax)) // 0 for root node + if (vtkBox::IntersectWithLine(bounds, p1, p2, tmin, tmax, x0, x1, plane0, plane1) == 0) { - return false; + return 0; // No intersections possible, line is outside the locator } + + // Initialize intersection query array if necessary. This is done + // locally to ensure thread safety. + std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); + // Ok, setup a stack and various params nodeStack ns; - double closest_intersection = VTK_DOUBLE_MAX; - bool HIT = false; // setup our axis optimized ray box edge stuff - int axis = getDominantAxis(ray_vec); + int axis = getDominantAxis(rayDir); double (*_getMinDist)(const double origin[3], const double dir[3], const double B[6]); switch (axis) { @@ -747,9 +721,7 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] break; } - // // OK, lets walk the tree and find intersections - // vtkCellTreeNode* n = &this->Tree->Nodes.front(); ns.push(n); while (!ns.empty()) @@ -765,11 +737,10 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] int mustCheck = 0; // to check if both left and right sub trees need to be checked - // while (!node->IsLeaf()) { // this must be a parent node // Which child node is closest to ray origin - given direction - Classify(p1, ray_vec, tDist, nearNode, node, farNode, mustCheck); + Classify(p1, rayDir, tDist, nearNode, node, farNode, mustCheck); // if the distance to the farNode edge of the nearNode box is > tmax, no need to test farNode // box (we still need to test Mid because it may overlap slightly) if (mustCheck) @@ -795,364 +766,225 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] node = nearNode; } } - double t_hit, ipt[3]; // Ok, so we're a leaf node, first check the BBox against the ray // then test the candidates in our sorted ray direction order - _tmin = tmin; - _tmax = tmax; - // if (node->RayMinMaxT(p1, ray_vec, _tmin, _tmax)) { - // Was the closest point on the box > intersection point - // if (_tmax>closest_intersection) break; - // - for (int i = 0; i < (int)node->Size(); i++) + for (unsigned int i = 0; i < node->Size(); i++) { - vtkIdType cell_ID = this->Tree->Leaves[node->Start() + i]; - // - - double* boundsPtr = cellBounds; - if (this->CellBounds) - { - boundsPtr = this->CellBounds[cell_ID]; - } - else - { - this->DataSet->GetCellBounds(cell_ID, cellBounds); - } - if (_getMinDist(p1, ray_vec, boundsPtr) > closest_intersection) - { - break; - } - // - ctmin = _tmin; - ctmax = _tmax; - if (this->RayMinMaxT(boundsPtr, p1, ray_vec, ctmin, ctmax)) + cId = this->Tree->Leaves[node->Start() + i]; + if (!cellHasBeenVisited[cId]) { - if (this->IntersectCellInternal(cell_ID, p1, p2, tol, t_hit, ipt, pcoords, subId)) + cellHasBeenVisited[cId] = true; + + this->GetCellBounds(cId, cellBoundsPtr); + if (_getMinDist(p1, rayDir, cellBoundsPtr) > tBest) + { + break; + } + // check whether we intersect the cell bounds + int hitCellBounds = + vtkBox::IntersectBox(cellBoundsPtr, p1, rayDir, hitCellBoundsPosition, tHitCell, tol); + + if (hitCellBounds) { - if (t_hit < closest_intersection) + this->DataSet->GetCell(cId, cell); + if (cell->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) { - HIT = true; - closest_intersection = t_hit; - cellIds = cell_ID; - x[0] = ipt[0]; - x[1] = ipt[1]; - x[2] = ipt[2]; + if (t < tBest) + { + tBest = t; + xBest[0] = x[0]; + xBest[1] = x[1]; + xBest[2] = x[2]; + pCoordsBest[0] = pcoords[0]; + pCoordsBest[1] = pcoords[1]; + pCoordsBest[2] = pcoords[2]; + subIdBest = subId; + cellIdBest = cId; + } } } } } - // } } - if (HIT) + // If a cell has been intersected, recover the information and return. + if (cellIdBest >= 0) { - t = closest_intersection; + this->DataSet->GetCell(cellIdBest, cell); + t = tBest; + x[0] = xBest[0]; + x[1] = xBest[1]; + x[2] = xBest[2]; + pcoords[0] = pCoordsBest[0]; + pcoords[1] = pCoordsBest[1]; + pcoords[2] = pCoordsBest[2]; + subId = subIdBest; + cellId = cellIdBest; + return 1; } - // - return HIT; + return 0; } + //------------------------------------------------------------------------------ -bool vtkCellTreeLocator::RayMinMaxT( - const double origin[3], const double dir[3], double& rTmin, double& rTmax) +struct IntersectionInfo { - double tT; - // X-Axis - double bounds[6]; - - bounds[0] = this->Tree->DataBBox[0]; - bounds[1] = this->Tree->DataBBox[1]; - bounds[2] = this->Tree->DataBBox[2]; - bounds[3] = this->Tree->DataBBox[3]; - bounds[4] = this->Tree->DataBBox[4]; - bounds[5] = this->Tree->DataBBox[5]; - - if (dir[0] < -EPSILON_) - { // ray travelling in -x direction - tT = (bounds[0] - origin[0]) / dir[0]; - if (tT < rTmin) - { - return (false); // ray already left of box. Can't hit - } - if (tT <= rTmax) - { - rTmax = tT; // update new tmax - } - tT = (bounds[1] - origin[0]) / dir[0]; // distance to right edge - if (tT >= rTmin) - { // can't see this ever happening - if (tT > rTmax) - { - return false; // clip start of ray to right edge - } - rTmin = tT; - } - } - else if (dir[0] > EPSILON_) - { - tT = (bounds[1] - origin[0]) / dir[0]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[0] - origin[0]) / dir[0]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (origin[0] < bounds[0] || origin[0] > bounds[1]) - { - return (false); - } - // Y-Axis - if (dir[1] < -EPSILON_) + vtkIdType CellId; + std::array IntersectionPoint; + double T; + + IntersectionInfo(vtkIdType cellId, double x[3], double t) + : CellId(cellId) + , IntersectionPoint({ x[0], x[1], x[2] }) + , T(t) { - tT = (bounds[2] - origin[1]) / dir[1]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[3] - origin[1]) / dir[1]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } } - else if (dir[1] > EPSILON_) +}; + +//------------------------------------------------------------------------------ +int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], const double tol, + vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) +{ + this->BuildLocatorIfNeeded(); + // Initialize the list of points/cells + if (points) { - tT = (bounds[3] - origin[1]) / dir[1]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[2] - origin[1]) / dir[1]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } + points->Reset(); } - else if (origin[1] < bounds[2] || origin[1] > bounds[3]) + if (cellIds) { - return (false); + cellIds->Reset(); } - // Z-Axis - if (dir[2] < -EPSILON_) + vtkCellTreeNode *node, *nearNode, *farNode; + double tmin, tmax, tDist, tHitCell; + double rayDir[3], x0[3], x1[3], hitCellBoundsPosition[3]; + int plane0, plane1, subId, hitCellBounds; + vtkMath::Subtract(p2, p1, rayDir); + double* bounds = this->Tree->DataBBox; + double cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; + vtkIdType cId; + double t, x[3], pcoords[3]; + + // Does ray pass through root BBox + if (vtkBox::IntersectWithLine(bounds, p1, p2, tmin, tmax, x0, x1, plane0, plane1) == 0) { - tT = (bounds[4] - origin[2]) / dir[2]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[5] - origin[2]) / dir[2]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } + return 0; // No intersections possible, line is outside the locator } - else if (dir[2] > EPSILON_) + + // Initialize intersection query array if necessary. This is done + // locally to ensure thread safety. + std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); + + // Ok, setup a stack and various params + nodeStack ns; + + // we will sort intersections by t, so keep track using these lists + std::vector cellIntersections; + // OK, lets walk the tree and find intersections + vtkCellTreeNode* n = &this->Tree->Nodes.front(); + ns.push(n); + while (!ns.empty()) { - tT = (bounds[5] - origin[2]) / dir[2]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[4] - origin[2]) / dir[2]; - if (tT >= rTmin) - { - if (tT > rTmax) + node = ns.top(); + ns.pop(); + // We do as few tests on the way down as possible, because our BBoxes + // can be quite tight and we want to reject as many boxes as possible without + // testing them at all - mainly because we quickly get to a leaf node and + // test candidates, once we've found a hit, we note the intersection t val, + // as soon as we pull a BBox of the stack that has a closest point further + // than the t val, we know we can stop. + + int mustCheck = 0; // to check if both left and right sub trees need to be checked + + // + while (!node->IsLeaf()) + { // this must be a parent node + // Which child node is closest to ray origin - given direction + Classify(p1, rayDir, tDist, nearNode, node, farNode, mustCheck); + // if the distance to the farNode edge of the nearNode box is > tmax, no need to test farNode + // box (we still need to test Mid because it may overlap slightly) + if (mustCheck) { - return (false); + ns.push(farNode); + node = nearNode; } - rTmin = tT; - } - } - else if (origin[2] < bounds[4] || origin[2] > bounds[5]) - { - return (false); - } - return (true); -} -//------------------------------------------------------------------------------ -bool vtkCellTreeLocator::RayMinMaxT( - const double bounds[6], const double origin[3], const double dir[3], double& rTmin, double& rTmax) -{ - double tT; - // X-Axis - if (dir[0] < -EPSILON_) - { // ray travelling in -x direction - tT = (bounds[0] - origin[0]) / dir[0]; // Ipoint less than minT - ray outside box! - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; // update new tmax - } - tT = (bounds[1] - origin[0]) / dir[0]; // distance to right edge - if (tT >= rTmin) - { // can't see this ever happening - if (tT > rTmax) - { - return false; // clip start of ray to right edge + else if ((tDist > tmax) || (tDist <= 0)) + { // <=0 for ray on edge + node = nearNode; } - rTmin = tT; - } - } - else if (dir[0] > EPSILON_) - { - tT = (bounds[1] - origin[0]) / dir[0]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[0] - origin[0]) / dir[0]; - if (tT >= rTmin) - { - if (tT > rTmax) + // if the distance to the farNode edge of the nearNode box is < tmin, no need to test nearNode + // box + else if (tDist < tmin) { - return (false); + ns.push(nearNode); + node = farNode; } - rTmin = tT; - } - } - else if (origin[0] < bounds[0] || origin[0] > bounds[1]) - { - return (false); - } - // Y-Axis - if (dir[1] < -EPSILON_) - { - tT = (bounds[2] - origin[1]) / dir[1]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - rTmax = tT; - tT = (bounds[3] - origin[1]) / dir[1]; - if (tT >= rTmin) - { - if (tT > rTmax) + // All the child nodes may be candidates, keep nearNode, push farNode then mid + else { - return (false); + ns.push(farNode); + node = nearNode; } - rTmin = tT; - } - } - else if (dir[1] > EPSILON_) - { - tT = (bounds[3] - origin[1]) / dir[1]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; } - tT = (bounds[2] - origin[1]) / dir[1]; - if (tT >= rTmin) + // Ok, so we're a leaf node, first check the BBox against the ray + // then test the candidates in our sorted ray direction order + for (unsigned int i = 0; i < node->Size(); i++) { - if (tT > rTmax) + cId = this->Tree->Leaves[node->Start() + i]; + if (!cellHasBeenVisited[cId]) { - return (false); + cellHasBeenVisited[cId] = true; + + // check whether we intersect the cell bounds + this->GetCellBounds(cId, cellBoundsPtr); + hitCellBounds = + vtkBox::IntersectBox(cellBoundsPtr, p1, rayDir, hitCellBoundsPosition, tHitCell, tol); + + if (hitCellBounds) + { + // Note because of cellHasBeenVisited[], we know this cId is unique + if (cell) + { + this->DataSet->GetCell(cId, cell); + if (cell->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) + { + cellIntersections.emplace_back(cId, x, t); + } + } + else + { + cellIntersections.emplace_back(cId, hitCellBoundsPosition, tHitCell); + } + } } - rTmin = tT; } } - else if (origin[1] < bounds[2] || origin[1] > bounds[3]) - { - return (false); - } - // Z-Axis - if (dir[2] < -EPSILON_) + // if we had intersections, sort them by increasing t + if (!cellIntersections.empty()) { - tT = (bounds[4] - origin[2]) / dir[2]; - if (tT < rTmin) + vtkIdType numIntersections = static_cast(cellIntersections.size()); + std::sort(cellIntersections.begin(), cellIntersections.end(), + [&](const IntersectionInfo& a, const IntersectionInfo b) { return a.T < b.T; }); + if (points) { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[5] - origin[2]) / dir[2]; - if (tT >= rTmin) - { - if (tT > rTmax) + points->SetNumberOfPoints(numIntersections); + for (vtkIdType i = 0; i < numIntersections; ++i) { - return (false); + points->SetPoint(i, cellIntersections[i].IntersectionPoint.data()); } - rTmin = tT; - } - } - else if (dir[2] > EPSILON_) - { - tT = (bounds[5] - origin[2]) / dir[2]; - if (tT < rTmin) - { - return (false); } - if (tT <= rTmax) + if (cellIds) { - rTmax = tT; - } - tT = (bounds[4] - origin[2]) / dir[2]; - if (tT >= rTmin) - { - if (tT > rTmax) + cellIds->SetNumberOfIds(numIntersections); + for (vtkIdType i = 0; i < numIntersections; ++i) { - return (false); + cellIds->SetId(i, cellIntersections[i].CellId); } - rTmin = tT; } + return 1; } - else if (origin[2] < bounds[4] || origin[2] > bounds[5]) - { - return (false); - } - return (true); + return 0; } + //------------------------------------------------------------------------------ int vtkCellTreeLocator::getDominantAxis(const double dir[3]) { @@ -1172,6 +1004,7 @@ int vtkCellTreeLocator::getDominantAxis(const double dir[3]) return ((dir[2] > 0) ? POS_Z : NEG_Z); } } + //------------------------------------------------------------------------------ void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], double& rDist, vtkCellTreeNode*& nearNode, vtkCellTreeNode*& parent, vtkCellTreeNode*& farNode, int& mustCheck) @@ -1222,21 +1055,14 @@ void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], d } } } -//------------------------------------------------------------------------------ -int vtkCellTreeLocator::IntersectCellInternal(vtkIdType cell_ID, const double p1[3], - const double p2[3], const double tol, double& t, double ipt[3], double pcoords[3], int& subId) -{ - this->DataSet->GetCell(cell_ID, this->GenericCell); - return this->GenericCell->IntersectWithLine( - const_cast(p1), const_cast(p2), tol, t, ipt, pcoords, subId); -} + //------------------------------------------------------------------------------ void vtkCellTreeLocator::FreeSearchStructure() { delete this->Tree; this->Tree = nullptr; - this->Superclass::FreeCellBounds(); } + //------------------------------------------------------------------------------ // For drawing coloured boxes, we want the level/depth typedef std::pair boxLevel; @@ -1244,6 +1070,7 @@ typedef std::vector boxlist; // For testing bounds of the tree we need node/box typedef std::pair nodeBoxLevel; typedef std::stack> nodeinfostack; + //------------------------------------------------------------------------------ static void SplitNodeBox( vtkCellTreeLocator::vtkCellTreeNode* n, vtkBoundingBox& b, vtkBoundingBox& l, vtkBoundingBox& r) @@ -1262,6 +1089,7 @@ static void SplitNodeBox( rr.SetMinPoint(minpt[0], minpt[1], minpt[2]); r = rr; } + //------------------------------------------------------------------------------ static void AddBox(vtkPolyData* pd, double* bounds, int level) { @@ -1348,6 +1176,7 @@ static void AddBox(vtkPolyData* pd, double* bounds, int level) levels->InsertNextTuple1(level); } } + //------------------------------------------------------------------------------ void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) { @@ -1393,15 +1222,17 @@ void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) AddBox(pd, bounds, bl[i].second); } } + //------------------------------------------------------------------------------ void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) { this->BuildLocatorIfNeeded(); // nodeinfostack ns; - double cellBounds[6]; + double cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; vtkBoundingBox TestBox(bbox); - // + vtkCellTreeNode* n0 = &this->Tree->Nodes.front(); // create a box for the root double* DataBBox = this->Tree->DataBBox; @@ -1419,16 +1250,8 @@ void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) for (int i = 0; i < (int)n0->Size(); i++) { vtkIdType cell_ID = this->Tree->Leaves[n0->Start() + i]; - double* boundsPtr = cellBounds; - if (this->CellBounds) - { - boundsPtr = this->CellBounds[cell_ID]; - } - else - { - this->DataSet->GetCellBounds(cell_ID, boundsPtr); - } - vtkBoundingBox box(boundsPtr); + this->GetCellBounds(cell_ID, cellBoundsPtr); + vtkBoundingBox box(cellBoundsPtr); if (TestBox.Intersects(box)) { cells->InsertNextId(cell_ID); @@ -1453,8 +1276,8 @@ void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) } } } -//------------------------------------------------------------------------------ +//------------------------------------------------------------------------------ void vtkCellTreeLocator::PrintSelf(ostream& os, vtkIndent indent) { this->Superclass::PrintSelf(os, indent); diff --git a/Common/DataModel/vtkCellTreeLocator.h b/Common/DataModel/vtkCellTreeLocator.h index ade9c7cd80ff..deeb39241791 100644 --- a/Common/DataModel/vtkCellTreeLocator.h +++ b/Common/DataModel/vtkCellTreeLocator.h @@ -59,11 +59,13 @@ class vtkCellArray; class VTKCOMMONDATAMODEL_EXPORT vtkCellTreeLocator : public vtkAbstractCellLocator { public: - class vtkCellTree; - class vtkCellTreeNode; - + ///@{ + /** + * Standard methods to print and obtain type-related information. + */ vtkTypeMacro(vtkCellTreeLocator, vtkAbstractCellLocator); void PrintSelf(ostream& os, vtkIndent indent) override; + ///@} /** * Constructor sets the maximum number of cells in a leaf to 8 @@ -74,15 +76,16 @@ public: ///@{ /** - * Test a point to find if it is inside a cell. Returns the cellId if inside - * or -1 if not. + * Set/Get the number of buckets. */ - vtkIdType FindCell(double pos[3], double vtkNotUsed(tol2), vtkGenericCell* cell, - double pcoords[3], double* weights) override; - vtkIdType FindCell(double pos[3], double vtkNotUsed(tol2), vtkGenericCell* cell, int& subId, - double pcoords[3], double* weights) override; + vtkSetMacro(NumberOfBuckets, int); + vtkGetMacro(NumberOfBuckets, int); ///@} + // Re-use any superclass signatures that we don't override. + using vtkAbstractCellLocator::FindCell; + using vtkAbstractCellLocator::IntersectWithLine; + /** * Return intersection point (if any) AND the cell which was intersected by * the finite line. The cell is returned as a cell id and as a generic cell. @@ -90,6 +93,18 @@ public: int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; + /** + * Take the passed line segment and intersect it with the data set. + * The return value of the function is 0 if no intersections were found. + * For each intersection with the bounds of a cell or with a cell (if a cell is provided), + * the points and cellIds have the relevant information added sorted by t. + * If points or cellIds are nullptr pointers, then no information is generated for that list. + * + * For other IntersectWithLine signatures, see vtkAbstractCellLocator. + */ + int IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, + vtkIdList* cellIds, vtkGenericCell* cell) override; + /** * Return a list of unique cell ids inside of a given bounding box. The * user must provide the vtkIdList to populate. This method returns data @@ -97,40 +112,27 @@ public: */ void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; - using vtkAbstractCellLocator::FindClosestPoint; - using vtkAbstractCellLocator::FindClosestPointWithinRadius; - /** - * reimplemented from vtkAbstractCellLocator to support bad compilers + * Take the passed line segment and intersect it with the data set. + * For each intersection with the bounds of a cell, the cellIds + * have the relevant information added sort by t. If cellIds is nullptr + * pointer, then no information is generated for that list. + * + * Reimplemented from vtkAbstractCellLocator to showcase that it's a supported function. */ - int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], - double pcoords[3], int& subId) override + void FindCellsAlongLine( + const double p1[3], const double p2[3], double tolerance, vtkIdList* cellsIds) override { - return this->Superclass::IntersectWithLine(p1, p2, tol, t, x, pcoords, subId); + this->Superclass::FindCellsAlongLine(p1, p2, tolerance, cellsIds); } /** - * Return intersection point (if any) AND the cell which was intersected by - * the finite line. The cell is returned as a cell id and as a generic cell. - * This function is a modification from the vtkModifiedBSPTree class using the - * data structures in the paper to find intersections. + * Find the cell containing a given point. returns -1 if no cell found + * the cell parameters are copied into the supplied variables, a cell must + * be provided to store the information. */ - int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], - double pcoords[3], int& subId, vtkIdType& cellId) override; - - /** - * reimplemented from vtkAbstractCellLocator to support bad compilers - */ - int IntersectWithLine( - const double p1[3], const double p2[3], vtkPoints* points, vtkIdList* cellIds) override - { - return this->Superclass::IntersectWithLine(p1, p2, points, cellIds); - } - - /** - * reimplemented from vtkAbstractCellLocator to support bad compilers - */ - vtkIdType FindCell(double x[3]) override { return this->Superclass::FindCell(x); } + vtkIdType FindCell(double pos[3], double vtkNotUsed(tol2), vtkGenericCell* cell, int& subId, + double pcoords[3], double* weights) override; ///@{ /** @@ -144,7 +146,8 @@ public: void BuildLocator() override; ///@} - ///@{ + class vtkCellTree; + class vtkCellTreeNode; /** * Internal classes made public to allow subclasses to create * customized some traversal algorithms @@ -157,7 +160,6 @@ public: friend class vtkCellPointTraversal; friend class vtkCellTreeNode; friend class vtkCellTreeBuilder; - ///@} public: double DataBBox[6]; // This store the bounding values of the dataset @@ -206,26 +208,12 @@ protected: vtkCellTreeLocator(); ~vtkCellTreeLocator() override; - // Test ray against node BBox : clip t values to extremes - bool RayMinMaxT(const double origin[3], const double dir[3], double& rTmin, double& rTmax); - - bool RayMinMaxT(const double bounds[6], const double origin[3], const double dir[3], - double& rTmin, double& rTmax); - int getDominantAxis(const double dir[3]); // Order nodes as near/far relative to ray void Classify(const double origin[3], const double dir[3], double& rDist, vtkCellTreeNode*& near, vtkCellTreeNode*& mid, vtkCellTreeNode*& far, int& mustCheck); - // From vtkModifiedBSPTRee - // We provide a function which does the cell/ray test so that - // it can be overridden by subclasses to perform special treatment - // (Example : Particles stored in tree, have no dimension, so we must - // override the cell test to return a value based on some particle size - virtual int IntersectCellInternal(vtkIdType cell_ID, const double p1[3], const double p2[3], - const double tol, double& t, double ipt[3], double pcoords[3], int& subId); - int NumberOfBuckets; vtkCellTree* Tree; diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 213679629687..9a551986f92a 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -12,6 +12,9 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +// VTK_DEPRECATED_IN_9_2_0() warnings for this class. +#define VTK_DEPRECATION_LEVEL 0 + #include "vtkStaticCellLocator.h" #include "vtkBoundingBox.h" @@ -28,6 +31,7 @@ #include "vtkPolyData.h" #include "vtkSMPTools.h" +#include #include #include @@ -38,7 +42,7 @@ vtkStandardNewMacro(vtkStaticCellLocator); // // Note that are two key classes: the vtkCellBinner and the vtkCellProcessor. // the Binner is used to perform binning operations are cells are placed into -// the uniformally subdivided bin space. The Processor is a templated class +// the uniformly subdivided bin space. The Processor is a templated class // (templated over ID type to reduce memory and speed sorting when the cell // ids are small). // @@ -83,7 +87,6 @@ struct vtkCellBinner double hX, hY, hZ; double fX, fY, fZ, bX, bY, bZ; vtkIdType xD, yD, zD, xyD; - double binTol; // Construction vtkCellBinner(vtkStaticCellLocator* loc, vtkIdType numCells, vtkIdType numBins) @@ -120,10 +123,6 @@ struct vtkCellBinner this->yD = this->Divisions[1]; this->zD = this->Divisions[2]; this->xyD = this->Divisions[0] * this->Divisions[1]; - - this->binTol = loc->GetUseDiagonalLengthTolerance() - ? loc->GetTolerance() * sqrt(this->hX * this->hX + this->hY * this->hY + this->hZ * this->hZ) - : loc->GetTolerance(); } ~vtkCellBinner() @@ -186,13 +185,12 @@ struct vtkCellBinner for (; cellId < endCellId; ++cellId, bds += 6) { this->DataSet->GetCellBounds(cellId, bds); - double tol = this->binTol; - xmin[0] = bds[0] - tol; - xmin[1] = bds[2] - tol; - xmin[2] = bds[4] - tol; - xmax[0] = bds[1] + tol; - xmax[1] = bds[3] + tol; - xmax[2] = bds[5] + tol; + xmin[0] = bds[0]; + xmin[1] = bds[2]; + xmin[2] = bds[4]; + xmax[0] = bds[1]; + xmax[1] = bds[3]; + xmax[2] = bds[5]; this->GetBinIndices(xmin, ijkMin); this->GetBinIndices(xmax, ijkMax); @@ -276,12 +274,12 @@ struct vtkCellProcessor virtual vtkIdType FindCell( const double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) = 0; virtual void FindCellsWithinBounds(double* bbox, vtkIdList* cells) = 0; - virtual void FindCellsAlongLine( - const double p1[3], const double p2[3], double tol, vtkIdList* cells) = 0; virtual void FindCellsAlongPlane( const double o[3], const double n[3], double tolerance, vtkIdList* cells) = 0; virtual int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) = 0; + virtual int IntersectWithLine(const double p1[3], const double p2[3], const double tol, + vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) = 0; virtual bool InsideCellBounds(const double x[3], vtkIdType cellId) = 0; virtual vtkIdType FindClosestPointWithinRadius(const double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, @@ -348,12 +346,12 @@ struct CellProcessor : public vtkCellProcessor vtkIdType FindCell(const double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) override; void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; - void FindCellsAlongLine( - const double p1[3], const double p2[3], double tol, vtkIdList* cells) override; void FindCellsAlongPlane( const double o[3], const double n[3], double tolerance, vtkIdList* cells) override; - int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], + int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; + int IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, + vtkIdList* cellIds, vtkGenericCell* cell) override; bool InsideCellBounds(const double x[3], vtkIdType cellId) override; vtkIdType FindClosestPointWithinRadius(const double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; @@ -376,13 +374,12 @@ struct CellProcessor : public vtkCellProcessor for (; cellId < endCellId; ++cellId, bds += 6) { - double tol = this->Binner->binTol; - xmin[0] = bds[0] - tol; - xmin[1] = bds[2] - tol; - xmin[2] = bds[4] - tol; - xmax[0] = bds[1] + tol; - xmax[1] = bds[3] + tol; - xmax[2] = bds[5] + tol; + xmin[0] = bds[0]; + xmin[1] = bds[2]; + xmin[2] = bds[4]; + xmax[0] = bds[1]; + xmax[1] = bds[3]; + xmax[2] = bds[5]; this->Binner->GetBinIndices(xmin, ijkMin); this->Binner->GetBinIndices(xmax, ijkMax); @@ -566,28 +563,50 @@ void CellProcessor::FindCellsWithinBounds(double* bbox, vtkIdList* cells) } // k-footprint } +//------------------------------------------------------------------------------ +struct IntersectionInfo +{ + vtkIdType CellId; + std::array IntersectionPoint; + double T; + + IntersectionInfo(vtkIdType cellId, double x[3], double t) + : CellId(cellId) + , IntersectionPoint({ x[0], x[1], x[2] }) + , T(t) + { + } +}; + //------------------------------------------------------------------------------ // This code traverses the cell locator by following the intersection ray. All // cells in intersected bins are placed into the output cellId vtkIdList. See // the IntersectWithLine method for more information on voxel traversal. template -void CellProcessor::FindCellsAlongLine( - const double a0[3], const double a1[3], double vtkNotUsed(tol), vtkIdList* cells) +int CellProcessor::IntersectWithLine(const double p1[3], const double p2[3], const double tol, + vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) { - // Initialize the list of cells - cells->Reset(); + // Initialize the list of points/cells + if (points) + { + points->Reset(); + } + if (cellIds) + { + cellIds->Reset(); + } // Make sure the bounding box of the locator is hit. Also, determine the // entry and exit points into and out of the locator. This is used to // determine the bins where the ray starts and ends. double* bounds = this->Binner->Bounds; - double t0, t1, x0[3], x1[3], rayDir[3]; - int plane0, plane1; - vtkMath::Subtract(a1, a0, rayDir); + double t0, t1, x0[3], x1[3], rayDir[3], t, x[3], pcoords[3]; + int plane0, plane1, subId; + vtkMath::Subtract(p2, p1, rayDir); - if (vtkBox::IntersectWithLine(bounds, a0, a1, t0, t1, x0, x1, plane0, plane1) == 0) + if (vtkBox::IntersectWithLine(bounds, p1, p2, t0, t1, x0, x1, plane0, plane1) == 0) { - return; // No intersections possible, line is outside the locator + return 0; // No intersections possible, line is outside the locator } // Okay process line @@ -631,6 +650,8 @@ void CellProcessor::FindCellsAlongLine( tDelta[1] = (rayDir[1] != 0.0) ? (h[1] / rayDir[1]) * step[1] : VTK_FLOAT_MAX; tDelta[2] = (rayDir[2] != 0.0) ? (h[2] / rayDir[2]) * step[2] : VTK_FLOAT_MAX; + // we will sort intersections by t, so keep track using these lists + std::vector cellIntersections; // Start walking through the bins, continue until traversed the entire // locator. Note that termination of the while(1) loop occurs when the ray // passes out of the locator via the break command. @@ -638,23 +659,43 @@ void CellProcessor::FindCellsAlongLine( { if ((numCellsInBin = this->GetNumberOfIds(idx)) > 0) // there are some cell here { - const CellFragments* cellIds = this->GetIds(idx); + const CellFragments* cellFragments = this->GetIds(idx); this->ComputeBinBounds(ijk[0], ijk[1], ijk[2], binBounds); for (i = 0; i < numCellsInBin; i++) { - cId = cellIds[i].CellId; + cId = cellFragments[i].CellId; if (!cellHasBeenVisited[cId]) { cellHasBeenVisited[cId] = true; // check whether we intersect the cell bounds - int hitCellBounds = vtkBox::IntersectBox(this->CellBounds + (6 * cId), a0, rayDir, - hitCellBoundsPosition, tHitCell, this->Binner->binTol); + int hitCellBounds = vtkBox::IntersectBox( + this->CellBounds + (6 * cId), p1, rayDir, hitCellBoundsPosition, tHitCell, tol); if (hitCellBounds) { // Note because of cellHasBeenVisited[], we know this cId is unique - cells->InsertNextId(cId); + if (cell) + { + this->DataSet->GetCell(cId, cell); + if (cell->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) + { + // Make sure that intersection occurs within this bin or else spurious cell + // intersections can occur behind this bin which are not the correct answer. + if (!CellProcessor::IsInBounds(binBounds, x, tol)) + { + cellHasBeenVisited[cId] = false; // mark the cell non-visited + } + else + { + cellIntersections.emplace_back(cId, x, t); + } + } + } + else + { + cellIntersections.emplace_back(cId, hitCellBoundsPosition, tHitCell); + } } // if (hitCellBounds) } // if (!cellHasBeenVisited[cId]) } // over all cells in bin @@ -705,6 +746,32 @@ void CellProcessor::FindCellsAlongLine( idx = ijk[0] + ijk[1] * ndivs[0] + ijk[2] * prod; } } // while still in locator + + // if we had intersections, sort them by increasing t + if (!cellIntersections.empty()) + { + T numIntersections = static_cast(cellIntersections.size()); + std::sort(cellIntersections.begin(), cellIntersections.end(), + [&](const IntersectionInfo& a, const IntersectionInfo b) { return a.T < b.T; }); + if (points) + { + points->SetNumberOfPoints(numIntersections); + for (i = 0; i < numIntersections; ++i) + { + points->SetPoint(i, cellIntersections[i].IntersectionPoint.data()); + } + } + if (cellIds) + { + cellIds->SetNumberOfIds(numIntersections); + for (i = 0; i < numIntersections; ++i) + { + cellIds->SetId(i, cellIntersections[i].CellId); + } + } + return 1; + } + return 0; } // This functor identifies candidate cells as to whether they may intersect @@ -742,7 +809,7 @@ struct CellPlaneCandidates this->BinOffsetZ = this->Binner->hZ / 2.0; // The BinRadius is used to cull bins quickly. It's a variant of a sphere - // tree test (with the center of a sphere corrsponding to the center of a + // tree test (with the center of a sphere corresponding to the center of a // bin). Note that the plane orientation affects the radius: the end // result is that a smaller sphere radius can typically be used (as // compared to using the 0.5*(diagonal length) of a bin). This radius @@ -1054,7 +1121,7 @@ vtkIdType CellProcessor::FindClosestPointWithinRadius(const double x[3], doub // of this code: // https://github.com/francisengelmann/fast_voxel_traversal/blob/master/main.cpp. template -int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], double tol, +int CellProcessor::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) { double* bounds = this->Binner->Bounds; @@ -1063,20 +1130,22 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], double* h = this->Binner->H; T i, numCellsInBin; double rayDir[3]; - vtkMath::Subtract(a1, a0, rayDir); - double curPos[3], curT, tMin = VTK_FLOAT_MAX; - int ijk[3]; - vtkIdType idx, cId, bestCellId = (-1); + vtkMath::Subtract(p2, p1, rayDir); + double t0, t1, x0[3], x1[3], tBest = VTK_FLOAT_MAX, xBest[3], pCoordsBest[3]; + int ijk[3], ijkEnd[3], plane0, plane1, subIdBest = -1; + vtkIdType idx, cId, cellIdBest = -1; double hitCellBoundsPosition[3], tHitCell; double step[3], next[3], tMax[3], tDelta[3]; - double binBounds[6], binTol = this->Binner->binTol; + double binBounds[6]; - // Make sure the bounding box of the locator is hit. - cellId = (-1); + // Make sure the bounding box of the locator is hit. Also, determine the + // entry and exit points into and out of the locator. This is used to + // determine the bins where the ray starts and ends. + cellId = -1; subId = 0; - if (vtkBox::IntersectBox(bounds, a0, rayDir, curPos, curT) == 0) + if (vtkBox::IntersectWithLine(bounds, p1, p2, t0, t1, x0, x1, plane0, plane1) == 0) { - return 0; + return 0; // No intersections possible, line is outside the locator } // Initialize intersection query array if necessary. This is done @@ -1085,7 +1154,8 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], // Get the i-j-k point of intersection and bin index. This is // clamped to the boundary of the locator. - this->Binner->GetBinIndices(curPos, ijk); + this->Binner->GetBinIndices(x0, ijk); + this->Binner->GetBinIndices(x1, ijkEnd); idx = ijk[0] + ijk[1] * ndivs[0] + ijk[2] * prod; // Set up some traversal parameters for traversing through bins @@ -1099,9 +1169,9 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], next[1] = bounds[2] + h[1] * (rayDir[1] >= 0.0 ? (ijk[1] + step[1]) : ijk[1]); next[2] = bounds[4] + h[2] * (rayDir[2] >= 0.0 ? (ijk[2] + step[2]) : ijk[2]); - tMax[0] = (rayDir[0] != 0.0) ? (next[0] - curPos[0]) / rayDir[0] : VTK_FLOAT_MAX; - tMax[1] = (rayDir[1] != 0.0) ? (next[1] - curPos[1]) / rayDir[1] : VTK_FLOAT_MAX; - tMax[2] = (rayDir[2] != 0.0) ? (next[2] - curPos[2]) / rayDir[2] : VTK_FLOAT_MAX; + tMax[0] = (rayDir[0] != 0.0) ? (next[0] - x0[0]) / rayDir[0] : VTK_FLOAT_MAX; + tMax[1] = (rayDir[1] != 0.0) ? (next[1] - x0[1]) / rayDir[1] : VTK_FLOAT_MAX; + tMax[2] = (rayDir[2] != 0.0) ? (next[2] - x0[2]) / rayDir[2] : VTK_FLOAT_MAX; tDelta[0] = (rayDir[0] != 0.0) ? (h[0] / rayDir[0]) * step[0] : VTK_FLOAT_MAX; tDelta[1] = (rayDir[1] != 0.0) ? (h[1] / rayDir[1]) * step[1] : VTK_FLOAT_MAX; @@ -1110,7 +1180,7 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], // Start walking through the bins, find the best cell of // intersection. Note that the ray may not penetrate all of the way // through the locator so may terminate when (t > 1.0). - for (bestCellId = (-1); bestCellId < 0;) + for (cellIdBest = (-1); cellIdBest < 0;) { if ((numCellsInBin = this->GetNumberOfIds(idx)) > 0) // there are some cell here { @@ -1125,25 +1195,32 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], // check whether we intersect the cell bounds int hitCellBounds = vtkBox::IntersectBox( - this->CellBounds + (6 * cId), a0, rayDir, hitCellBoundsPosition, tHitCell); + this->CellBounds + (6 * cId), p1, rayDir, hitCellBoundsPosition, tHitCell, tol); if (hitCellBounds) { // now, do the expensive GetCell call and the expensive // intersect with line call this->DataSet->GetCell(cId, cell); - if (cell->IntersectWithLine(a0, a1, tol, t, x, pcoords, subId) && t < tMin) + if (cell->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId) && t < tBest) { // Make sure that intersection occurs within this bin or else spurious cell // intersections can occur behind this bin which are not the correct answer. - if (!CellProcessor::IsInBounds(binBounds, x, binTol)) + if (!CellProcessor::IsInBounds(binBounds, x, tol)) { cellHasBeenVisited[cId] = false; // mark the cell non-visited } else { - tMin = t; - bestCellId = cId; + tBest = t; + xBest[0] = x[0]; + xBest[1] = x[1]; + xBest[2] = x[2]; + pCoordsBest[0] = pcoords[0]; + pCoordsBest[1] = pcoords[1]; + pCoordsBest[2] = pcoords[2]; + subIdBest = subId; + cellIdBest = cId; } } // if intersection } // if (hitCellBounds) @@ -1152,7 +1229,13 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], } // if cells in bin // Exit before end of ray, saves a few cycles - if (bestCellId >= 0) + if (cellIdBest >= 0) + { + break; + } + + // See if the traversal is complete (reached the end of the line). + if (ijk[0] == ijkEnd[0] && ijk[1] == ijkEnd[1] && ijk[2] == ijkEnd[2]) { break; } @@ -1164,13 +1247,11 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], { ijk[0] += static_cast(step[0]); tMax[0] += tDelta[0]; - curT = tMax[0]; } else { ijk[2] += static_cast(step[2]); tMax[2] += tDelta[2]; - curT = tMax[2]; } } else @@ -1179,18 +1260,16 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], { ijk[1] += static_cast(step[1]); tMax[1] += tDelta[1]; - curT = tMax[1]; } else { ijk[2] += static_cast(step[2]); tMax[2] += tDelta[2]; - curT = tMax[2]; } } - if (curT > 1.0 || ijk[0] < 0 || ijk[0] >= ndivs[0] || ijk[1] < 0 || ijk[1] >= ndivs[1] || - ijk[2] < 0 || ijk[2] >= ndivs[2]) + if (ijk[0] < 0 || ijk[0] >= ndivs[0] || ijk[1] < 0 || ijk[1] >= ndivs[1] || ijk[2] < 0 || + ijk[2] >= ndivs[2]) { break; } @@ -1198,30 +1277,32 @@ int CellProcessor::IntersectWithLine(const double a0[3], const double a1[3], { idx = ijk[0] + ijk[1] * ndivs[0] + ijk[2] * prod; } - } // for looking for valid intersected cell // If a cell has been intersected, recover the information and return. - // This information could be cached.... - if (bestCellId >= 0) + if (cellIdBest >= 0) { - this->DataSet->GetCell(bestCellId, cell); - cell->IntersectWithLine(a0, a1, tol, t, x, pcoords, subId); - - // store the best cell id in the return "parameter" - cellId = bestCellId; + this->DataSet->GetCell(cellIdBest, cell); + t = tBest; + x[0] = xBest[0]; + x[1] = xBest[1]; + x[2] = xBest[2]; + pcoords[0] = pCoordsBest[0]; + pcoords[1] = pCoordsBest[1]; + pcoords[2] = pCoordsBest[2]; + subId = subIdBest; + cellId = cellIdBest; return 1; } return 0; } + //------------------------------------------------------------------------------ template bool CellProcessor::InsideCellBounds(const double x[3], vtkIdType cellId) { - // In the future we should consider removing the (bin) tolerance - // because all the other locators have a check without tolerance - return CellProcessor::IsInBounds(this->CellBounds + 6 * cellId, x, this->Binner->binTol); + return CellProcessor::IsInBounds(this->CellBounds + 6 * cellId, x); } } // anonymous namespace @@ -1269,14 +1350,6 @@ void vtkStaticCellLocator::FreeSearchStructure() } } -//------------------------------------------------------------------------------ -vtkIdType vtkStaticCellLocator::FindCell( - double pos[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) -{ - int subId; - return this->FindCell(pos, tol2, cell, subId, pcoords, weights); -} - //------------------------------------------------------------------------------ vtkIdType vtkStaticCellLocator::FindCell( double pos[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) @@ -1289,17 +1362,6 @@ vtkIdType vtkStaticCellLocator::FindCell( return this->Processor->FindCell(pos, cell, subId, pcoords, weights); } -//------------------------------------------------------------------------------ -void vtkStaticCellLocator::FindClosestPoint(const double x[3], double closestPoint[3], - vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2) -{ - int inside; - double radius = vtkMath::Inf(); - double point[3] = { x[0], x[1], x[2] }; - this->FindClosestPointWithinRadius( - point, radius, closestPoint, cell, cellId, subId, dist2, inside); -} - //------------------------------------------------------------------------------ vtkIdType vtkStaticCellLocator::FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, @@ -1326,39 +1388,39 @@ void vtkStaticCellLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) } //------------------------------------------------------------------------------ -void vtkStaticCellLocator::FindCellsAlongLine( - const double p1[3], const double p2[3], double tol, vtkIdList* cells) +void vtkStaticCellLocator::FindCellsAlongPlane( + const double o[3], const double n[3], double tol, vtkIdList* cells) { this->BuildLocator(); if (!this->Processor) { return; } - return this->Processor->FindCellsAlongLine(p1, p2, tol, cells); + return this->Processor->FindCellsAlongPlane(o, n, tol, cells); } //------------------------------------------------------------------------------ -void vtkStaticCellLocator::FindCellsAlongPlane( - const double o[3], const double n[3], double tol, vtkIdList* cells) +int vtkStaticCellLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, + double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) { this->BuildLocator(); if (!this->Processor) { - return; + return 0; } - return this->Processor->FindCellsAlongPlane(o, n, tol, cells); + return this->Processor->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId, cellId, cell); } //------------------------------------------------------------------------------ int vtkStaticCellLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, - double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) + vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) { this->BuildLocator(); if (!this->Processor) { return 0; } - return this->Processor->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId, cellId, cell); + return this->Processor->IntersectWithLine(p1, p2, tol, points, cellIds, cell); } //------------------------------------------------------------------------------ diff --git a/Common/DataModel/vtkStaticCellLocator.h b/Common/DataModel/vtkStaticCellLocator.h index fdfec3673d7d..2de13093bf36 100644 --- a/Common/DataModel/vtkStaticCellLocator.h +++ b/Common/DataModel/vtkStaticCellLocator.h @@ -27,12 +27,12 @@ * * @warning * vtkStaticCellLocator utilizes the following parent class parameters: - * - Tolerance (default 0.001) * - Automatic (default true) * - NumberOfCellsPerNode (default 10) * * vtkStaticCellLocator does NOT utilize the following parameters: * - CacheCellBounds (always cached) + * - Tolerance * - UseExistingSearchStructure * - LazyEvaluation * - Level @@ -52,6 +52,7 @@ #include "vtkAbstractCellLocator.h" #include "vtkCommonDataModelModule.h" // For export macro +#include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 // Forward declarations for PIMPL struct vtkCellBinner; @@ -83,67 +84,111 @@ public: vtkGetVectorMacro(Divisions, int, 3); ///@} - using vtkAbstractCellLocator::FindClosestPoint; - using vtkAbstractCellLocator::FindClosestPointWithinRadius; - ///@{ /** - * Test a point to find if it is inside a cell. Returns the cellId if inside - * or -1 if not. + * Set the maximum number of buckets in the locator. By default the value + * is set to VTK_INT_MAX. Note that there are significant performance + * implications at work here. If the number of buckets is set very large + * (meaning > VTK_INT_MAX) then internal sorting may be performed using + * 64-bit integers (which is much slower than using a 32-bit int). Of + * course, memory requirements may dramatically increase as well. It is + * recommended that the default value be used; but for extremely large data + * it may be desired to create a locator with an exceptionally large number + * of buckets. Note also that during initialization of the locator if the + * MaxNumberOfBuckets threshold is exceeded, the Divisions are scaled down + * in such a way as not to exceed the MaxNumberOfBuckets proportionally to + * the size of the bounding box in the x-y-z directions. */ - vtkIdType FindCell(double pos[3], double vtkNotUsed(tol2), vtkGenericCell* cell, - double pcoords[3], double* weights) override; - vtkIdType FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* GenCell, int& subId, - double pcoords[3], double* weights) override; + vtkSetClampMacro(MaxNumberOfBuckets, vtkIdType, 1000, VTK_ID_MAX); + vtkGetMacro(MaxNumberOfBuckets, vtkIdType); ///@} /** - * Reimplemented from vtkAbstractCellLocator to support bad compilers. + * Inform the user as to whether large ids are being used. This flag only + * has meaning after the locator has been built. Large ids are used when the + * number of binned points, or the number of bins, is >= the maximum number + * of buckets (specified by the user). Note that LargeIds are only available + * on 64-bit architectures. */ - vtkIdType FindCell(double x[3]) override { return this->Superclass::FindCell(x); } + bool GetLargeIds() { return this->LargeIds; } + ///@{ /** - * Return a list of unique cell ids inside of a given bounding box. The - * user must provide the vtkIdList to populate. This method returns data - * only after the locator has been built. + * These methods are deprecated. This flag was used in internally in conjunction with + * Tolerance, which has been removed because nobody was using it, and it would lead + * to really slow performance if the dataset was small bounds-wise. Tolerance was + * originally introduced to solve IntersectionWithLine issues the existed before. These + * issues have been resolved by using double tolerance internally. + * + * When set to true, the CellBinner will multiply the locator tolerance by the diagonal length + * of the dataset to compute its own tolerance. When not, it uses the locator tolerance + * directly. Default is false. */ - void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; + VTK_DEPRECATED_IN_9_2_0("This method is no longer used because Tolerance is also not used") + vtkSetMacro(UseDiagonalLengthTolerance, bool); + VTK_DEPRECATED_IN_9_2_0("This method is no longer used because Tolerance is also not used") + vtkGetMacro(UseDiagonalLengthTolerance, bool); + VTK_DEPRECATED_IN_9_2_0("This method is no longer used because Tolerance is also not used") + virtual void UseDiagonalLengthToleranceOn() + { + if (this->UseDiagonalLengthTolerance != true) + { + this->UseDiagonalLengthTolerance = true; + this->Modified(); + } + } + VTK_DEPRECATED_IN_9_2_0("This method is no longer used because Tolerance is also not used") + virtual void UseDiagonalLengthToleranceOff() + { + if (this->UseDiagonalLengthTolerance != false) + { + this->UseDiagonalLengthTolerance = false; + this->Modified(); + } + } + ///@} + + // Re-use any superclass signatures that we don't override. + using vtkAbstractCellLocator::FindCell; + using vtkAbstractCellLocator::FindClosestPoint; + using vtkAbstractCellLocator::FindClosestPointWithinRadius; + using vtkAbstractCellLocator::IntersectWithLine; /** - * Given a finite line defined by the two points (p1,p2), return the list - * of unique cell ids in the buckets containing the line. It is possible - * that an empty cell list is returned. The user must provide the vtkIdList - * cell list to populate. This method returns data only after the locator - * has been built. + * Return intersection point (if any) AND the cell which was intersected by + * the finite line. The cell is returned as a cell id and as a generic cell. + * + * For other IntersectWithLine signatures, see vtkAbstractCellLocator. */ - void FindCellsAlongLine( - const double p1[3], const double p2[3], double tolerance, vtkIdList* cells) override; + int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], + double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; - ///@{ /** - * Given an unbounded plane defined by an origin o[3] and unit normal n[3], - * return the list of unique cell ids in the buckets containing the - * plane. It is possible that an empty cell list is returned. The user must - * provide the vtkIdList cell list to populate. This method returns data - * only after the locator has been built. + * Take the passed line segment and intersect it with the data set. + * The return value of the function is 0 if no intersections were found. + * For each intersection with the bounds of a cell or with a cell (if a cell is provided), + * the points and cellIds have the relevant information added sorted by t. + * If points or cellIds are nullptr pointers, then no information is generated for that list. + * + * For other IntersectWithLine signatures, see vtkAbstractCellLocator. */ - void FindCellsAlongPlane( - const double o[3], const double n[3], double tolerance, vtkIdList* cells); - ///@} + int IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, + vtkIdList* cellIds, vtkGenericCell* cell) override; /** * Return the closest point and the cell which is closest to the point x. * The closest point is somewhere on a cell, it need not be one of the - * vertices of the cell. This version takes in a vtkGenericCell - * to avoid allocating and deallocating the cell. This is much faster than - * the version which does not take a *cell, especially when this function is - * called many times in a row such as by a for loop, where the allocation and - * deallocation can be done only once outside the for loop. If a cell is - * found, "cell" contains the points and ptIds for the cell "cellId" upon - * exit. + * vertices of the cell. + * + * Reimplemented from vtkAbstractCellLocator to showcase that it's a supported function. + * + * For other FindClosestPoint signatures, see vtkAbstractCellLocator. */ void FindClosestPoint(const double x[3], double closestPoint[3], vtkGenericCell* cell, - vtkIdType& cellId, int& subId, double& dist2) override; + vtkIdType& cellId, int& subId, double& dist2) override + { + this->Superclass::FindClosestPoint(x, closestPoint, cell, cellId, subId, dist2); + } /** * Return the closest point within a specified radius and the cell which is @@ -151,55 +196,55 @@ public: * need not be one of the vertices of the cell. This method returns 1 if a * point is found within the specified radius. If there are no cells within * the specified radius, the method returns 0 and the values of - * closestPoint, cellId, subId, and dist2 are undefined. This version takes - * in a vtkGenericCell to avoid allocating and deallocating the cell. This - * is much faster than the version which does not take a *cell, especially - * when this function is called many times in a row such as by a for loop, - * where the allocation and dealloction can be done only once outside the - * for loop. If a closest point is found, "cell" contains the points and - * ptIds for the cell "cellId" upon exit. If a closest point is found, - * inside returns the return value of the EvaluatePosition call to the - * closest cell; inside(=1) or outside(=0). + * closestPoint, cellId, subId, and dist2 are undefined. If a closest point + * is found, inside returns the return value of the EvaluatePosition call to + * the closest cell; inside(=1) or outside(=0). */ vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; /** - * Return intersection point (if any) AND the cell which was intersected by - * the finite line. The cell is returned as a cell id and as a generic cell. + * Return a list of unique cell ids inside of a given bounding box. The + * user must provide the vtkIdList to populate. */ - int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], - double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; + void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; /** - * Reimplemented from vtkAbstractCellLocator to support bad compilers. + * Take the passed line segment and intersect it with the data set. + * For each intersection with the bounds of a cell, the cellIds + * have the relevant information added. If cellIds is nullptr + * pointer, then no information is generated for that list. + * + * Reimplemented from vtkAbstractCellLocator to showcase that it's a supported function. */ - int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], - double pcoords[3], int& subId) override + void FindCellsAlongLine( + const double p1[3], const double p2[3], double tolerance, vtkIdList* cellsIds) override { - return this->Superclass::IntersectWithLine(p1, p2, tol, t, x, pcoords, subId); + this->Superclass::FindCellsAlongLine(p1, p2, tolerance, cellsIds); } /** - * Reimplemented from vtkAbstractCellLocator to support bad compilers. + * Take the passed line segment and intersect it with the data set. + * For each intersection with the bounds of a cell, the cellIds + * have the relevant information added sort by t. If cellIds is nullptr + * pointer, then no information is generated for that list. */ - int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], - double pcoords[3], int& subId, vtkIdType& cellId) override - { - return this->Superclass::IntersectWithLine(p1, p2, tol, t, x, pcoords, subId, cellId); - } + void FindCellsAlongPlane( + const double o[3], const double n[3], double tolerance, vtkIdList* cells) override; /** - * Reimplemented from vtkAbstractCellLocator to support bad compilers. + * Find the cell containing a given point. returns -1 if no cell found + * the cell parameters are copied into the supplied variables, a cell must + * be provided to store the information. + * + * For other FindCell signatures, see vtkAbstractCellLocator. */ - int IntersectWithLine( - const double p1[3], const double p2[3], vtkPoints* points, vtkIdList* cellIds) override - { - return this->Superclass::IntersectWithLine(p1, p2, points, cellIds); - } + vtkIdType FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* GenCell, int& subId, + double pcoords[3], double* weights) override; /** * Quickly test if a point is inside the bounds of a particular cell. + * This function should be used ONLY after the locator is built. */ bool InsideCellBounds(double x[3], vtkIdType cellId) override; @@ -212,45 +257,6 @@ public: void BuildLocator() override; ///@} - ///@{ - /** - * Set the maximum number of buckets in the locator. By default the value - * is set to VTK_INT_MAX. Note that there are significant performance - * implications at work here. If the number of buckets is set very large - * (meaning > VTK_INT_MAX) then internal sorting may be performed using - * 64-bit integers (which is much slower than using a 32-bit int). Of - * course, memory requirements may dramatically increase as well. It is - * recommended that the default value be used; but for extremely large data - * it may be desired to create a locator with an exceptionally large number - * of buckets. Note also that during initialization of the locator if the - * MaxNumberOfBuckets threshold is exceeded, the Divisions are scaled down - * in such a way as not to exceed the MaxNumberOfBuckets proportionally to - * the size of the bounding box in the x-y-z directions. - */ - vtkSetClampMacro(MaxNumberOfBuckets, vtkIdType, 1000, VTK_ID_MAX); - vtkGetMacro(MaxNumberOfBuckets, vtkIdType); - ///@} - - /** - * Inform the user as to whether large ids are being used. This flag only - * has meaning after the locator has been built. Large ids are used when the - * number of binned points, or the number of bins, is >= the maximum number - * of buckets (specified by the user). Note that LargeIds are only available - * on 64-bit architectures. - */ - bool GetLargeIds() { return this->LargeIds; } - - ///@{ - /** - * When set to true, the CellBinner will multiply the locator tolerance by the diagonal length - * of the dataset to compute its own tolerance. When not, it uses the locator tolerance - * directly. Default is false. - */ - vtkSetMacro(UseDiagonalLengthTolerance, bool); - vtkGetMacro(UseDiagonalLengthTolerance, bool); - vtkBooleanMacro(UseDiagonalLengthTolerance, bool); - ///@} - protected: vtkStaticCellLocator(); ~vtkStaticCellLocator() override; @@ -261,16 +267,14 @@ protected: vtkIdType MaxNumberOfBuckets; // Maximum number of buckets in locator bool LargeIds; // indicate whether integer ids are small or large + + // VTK_DEPRECATED_IN_9_2_0 This attribute needs to be removed bool UseDiagonalLengthTolerance = false; // Support PIMPLd implementation vtkCellBinner* Binner; // Does the binning vtkCellProcessor* Processor; // Invokes methods (templated subclasses) - // Support query operations - unsigned char* CellHasBeenVisited; - unsigned char QueryNumber; - private: vtkStaticCellLocator(const vtkStaticCellLocator&) = delete; void operator=(const vtkStaticCellLocator&) = delete; diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.cxx b/Filters/FlowPaths/vtkModifiedBSPTree.cxx index 646016429c3d..73a554bea873 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.cxx +++ b/Filters/FlowPaths/vtkModifiedBSPTree.cxx @@ -12,26 +12,26 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ - #include "vtkModifiedBSPTree.h" + +#include "vtkAppendPolyData.h" +#include "vtkBox.h" +#include "vtkCubeSource.h" #include "vtkGenericCell.h" #include "vtkIdListCollection.h" #include "vtkObjectFactory.h" #include "vtkPolyData.h" +#include "vtkSMPTools.h" #include -#include +#include #include #include -#include "vtkAppendPolyData.h" -#include "vtkCubeSource.h" -// //------------------------------------------------------------------------------ vtkStandardNewMacro(vtkModifiedBSPTree); + //------------------------------------------------------------------------------ -// -// enum { POS_X, @@ -41,8 +41,6 @@ enum POS_Z, NEG_Z }; -// -const double Epsilon_ = 1E-8; ////////////////////////////////////////////////////////////////////////////// // Main management and support for tree @@ -56,12 +54,14 @@ vtkModifiedBSPTree::vtkModifiedBSPTree() // this->npn = this->nln = this->tot_depth = 0; } + //------------------------------------------------------------------------------ vtkModifiedBSPTree::~vtkModifiedBSPTree() { this->FreeSearchStructure(); this->FreeCellBounds(); } + //------------------------------------------------------------------------------ void vtkModifiedBSPTree::FreeSearchStructure() { @@ -70,7 +70,6 @@ void vtkModifiedBSPTree::FreeSearchStructure() this->Level = 0; this->npn = this->nln = this->tot_depth = 0; } -//------------------------------------------------------------------------------ ////////////////////////////////////////////////////////////////////////////// // Here's the stuff for spatial subdivision @@ -86,6 +85,7 @@ typedef cell_extents* cell_extents_List; static int global_list_count = 0; +//------------------------------------------------------------------------------ class Sorted_cell_extents_Lists { public: @@ -140,8 +140,6 @@ extern "C" int CompareMax(const void* pA, const void* B) } } -//------------------------------------------------------------------------------ -//------------------------------------------------------------------------------ //------------------------------------------------------------------------------ void vtkModifiedBSPTree::BuildLocator() { @@ -151,6 +149,7 @@ void vtkModifiedBSPTree::BuildLocator() } this->ForceBuildLocator(); } + //------------------------------------------------------------------------------ void vtkModifiedBSPTree::BuildLocatorIfNeeded() { @@ -164,6 +163,7 @@ void vtkModifiedBSPTree::BuildLocatorIfNeeded() } } } + //------------------------------------------------------------------------------ void vtkModifiedBSPTree::ForceBuildLocator() { @@ -183,6 +183,7 @@ void vtkModifiedBSPTree::ForceBuildLocator() } this->BuildLocatorInternal(); } + //------------------------------------------------------------------------------ void vtkModifiedBSPTree::BuildLocatorInternal() { @@ -191,73 +192,68 @@ void vtkModifiedBSPTree::BuildLocatorInternal() if (!this->DataSet || (numCells = this->DataSet->GetNumberOfCells()) < 1) { vtkDebugMacro(<< "No Cells to divide"); - numCells = 0; + return; } vtkDebugMacro(<< "Creating BSPTree for " << numCells << " cells"); - // // Make sure the appropriate data is available - // this->FreeSearchStructure(); - this->FreeCellBounds(); // create the root node this->mRoot = new BSPNode(); this->mRoot->mAxis = rand() % 3; this->mRoot->depth = 0; - // - if (numCells == 0) + + if (this->CacheCellBounds) { - return; + this->FreeCellBounds(); + this->StoreCellBounds(); } - // - this->StoreCellBounds(); - // + // sort the cells into 6 lists using structure for subdividing tests Sorted_cell_extents_Lists* lists = new Sorted_cell_extents_Lists(numCells); - for (int i = 0; i < 3; i++) - { // loop over each axis - for (vtkIdType j = 0; j < numCells; j++) - { // loop over each cell - lists->Mins[i][j].min = CellBounds[j][i * 2]; // i=0 xmin, i=1 ymin, i=2 zmin - lists->Mins[i][j].max = CellBounds[j][i * 2 + 1]; // i=0 xmax, i=1 ymax, i=2 zmax - lists->Mins[i][j].cell_ID = j; - // - lists->Maxs[i][j].min = CellBounds[j][i * 2]; - lists->Maxs[i][j].max = CellBounds[j][i * 2 + 1]; - lists->Maxs[i][j].cell_ID = j; + vtkSMPTools::For(0, numCells, [&](vtkIdType begin, vtkIdType end) { + double cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; + for (uint8_t i = 0; i < 3; ++i) + { + for (vtkIdType j = begin; j < end; ++j) + { + this->GetCellBounds(j, cellBoundsPtr); + lists->Mins[i][j].min = cellBoundsPtr[i * 2]; + lists->Mins[i][j].max = cellBoundsPtr[i * 2 + 1]; + lists->Mins[i][j].cell_ID = j; + lists->Maxs[i][j].min = cellBoundsPtr[i * 2]; + lists->Maxs[i][j].max = cellBoundsPtr[i * 2 + 1]; + lists->Maxs[i][j].cell_ID = j; + } } + }); + for (uint8_t i = 0; i < 3; i++) + { // Sort - qsort(lists->Mins[i], numCells, sizeof(cell_extents), CompareMin); - qsort(lists->Maxs[i], numCells, sizeof(cell_extents), CompareMax); + vtkSMPTools::Sort(lists->Mins[i], lists->Mins[i] + numCells, + [&](const cell_extents& tA, const cell_extents& tB) { return tA.min < tB.min; }); + vtkSMPTools::Sort(lists->Maxs[i], lists->Maxs[i] + numCells, + [&](const cell_extents& tA, const cell_extents& tB) { return tA.max > tB.max; }); } - // // call the recursive subdivision routine - // vtkDebugMacro(<< "Beginning Subdivision"); - // - if (numCells > 0) - { - Subdivide(this->mRoot, lists, this->DataSet, numCells, 0, this->MaxLevel, - this->NumberOfCellsPerNode, this->Level); - } + + Subdivide(this->mRoot, lists, this->DataSet, numCells, 0, this->MaxLevel, + this->NumberOfCellsPerNode, this->Level); delete lists; + // Child nodes are responsible for freeing the temporary sorted lists - // this->BuildTime.Modified(); - // - double av_depth = (double)tot_depth / nln; - (void)av_depth; vtkDebugMacro(<< "BSP Tree Statistics \n" << "Num Parent/Leaf Nodes " << npn << "/" << nln << "\n" - << "Average Depth " << av_depth << " Original : " << numCells); + << "Average Depth " << double(tot_depth) / nln << " Original : " << numCells); } //------------------------------------------------------------------------------ -// // The main BSP subdivision routine : The code which does the division is only // a small part of this, the rest is just bookkeeping - it looks worse than it is. -// void vtkModifiedBSPTree::Subdivide(BSPNode* node, Sorted_cell_extents_Lists* lists, vtkDataSet* dataset, vtkIdType nCells, int depth, int maxlevel, vtkIdType maxCells, int& MaxDepth) { @@ -277,6 +273,8 @@ void vtkModifiedBSPTree::Subdivide(BSPNode* node, Sorted_cell_extents_Lists* lis // Do we want to subdivide this node ? // double pDiv = 0.0; + double cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; if ((nCells > maxCells) && (depth < maxlevel)) { // test for optimal subdivision @@ -295,7 +293,7 @@ void vtkModifiedBSPTree::Subdivide(BSPNode* node, Sorted_cell_extents_Lists* lis // in and out, and whichever crosses first - bingo ! if (lists->Mins[Daxis][j].min > lists->Maxs[Daxis][j].max) { - pDiv = lists->Mins[Daxis][j].min - Epsilon_; + pDiv = lists->Mins[Daxis][j].min - VTK_TOL; node->mAxis = Daxis; found = true; break; @@ -377,11 +375,13 @@ void vtkModifiedBSPTree::Subdivide(BSPNode* node, Sorted_cell_extents_Lists* lis { // process the MIN-List cell_extents ext = lists->Mins[Daxis][i]; - if (this->CellBounds[ext.cell_ID][2 * node->mAxis + 1] < pDiv) + // check whether we intersect the cell bounds + this->GetCellBounds(ext.cell_ID, cellBoundsPtr); + if (cellBoundsPtr[2 * node->mAxis + 1] < pDiv) { left->Mins[Daxis][Cmin_l[Daxis]++] = ext; } - else if (this->CellBounds[ext.cell_ID][2 * node->mAxis] > pDiv) + else if (cellBoundsPtr[2 * node->mAxis] > pDiv) { right->Mins[Daxis][Cmin_r[Daxis]++] = ext; } @@ -392,11 +392,11 @@ void vtkModifiedBSPTree::Subdivide(BSPNode* node, Sorted_cell_extents_Lists* lis // // process the MAX-List ext = lists->Maxs[Daxis][i]; - if (this->CellBounds[ext.cell_ID][2 * node->mAxis + 1] < pDiv) + if (cellBoundsPtr[2 * node->mAxis + 1] < pDiv) { left->Maxs[Daxis][Cmax_l[Daxis]++] = ext; } - else if (this->CellBounds[ext.cell_ID][2 * node->mAxis] > pDiv) + else if (cellBoundsPtr[2 * node->mAxis] > pDiv) { right->Maxs[Daxis][Cmax_r[Daxis]++] = ext; } @@ -527,7 +527,6 @@ void vtkModifiedBSPTree::Subdivide(BSPNode* node, Sorted_cell_extents_Lists* lis ////////////////////////////////////////////////////////////////////////////// // OK so this is a quick a dirty one for testing, but I can't be arsed // working out which faces are visible - class box { public: @@ -541,6 +540,7 @@ public: }; }; +//------------------------------------------------------------------------------ typedef std::vector boxlist; typedef std::stack> nodestack; @@ -651,41 +651,32 @@ int BSPNode::getDominantAxis(const double dir[3]) return ((dir[2] > 0) ? POS_Z : NEG_Z); } } + //------------------------------------------------------------------------------ int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) { - int hit = this->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId, cellId); - if (hit) - { - this->DataSet->GetCell(cellId, cell); - } - return hit; -} -//------------------------------------------------------------------------------ -int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3], double tol, - double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId) -{ - // - BSPNode *node, *Near, *Mid, *Far; - double ctmin, ctmax, tmin, tmax, _tmin, _tmax, tDist; - double ray_vec[3] = { p2[0] - p1[0], p2[1] - p1[1], p2[2] - p1[2] }; - // this->BuildLocatorIfNeeded(); - // + BSPNode *node, *Near, *Mid, *Far; + double tmin, tmax, tDist, tHitCell, tBest = VTK_DOUBLE_MAX, xBest[3], pCoordsBest[3]; + double rayDir[3], x0[3], x1[3], hitCellBoundsPosition[3], cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; + int plane1, plane2, subIdBest = -1; + vtkMath::Subtract(p2, p1, rayDir); + vtkIdType cId, cellIdBest = -1; + double* bounds = this->mRoot->Bounds; + cellId = -1; + // Does ray pass through root BBox - tmin = 0; - tmax = 1; - if (!this->mRoot->RayMinMaxT(p1, ray_vec, tmin, tmax)) + if (vtkBox::IntersectWithLine(bounds, p1, p2, tmin, tmax, x0, x1, plane1, plane2) == 0) { return false; } + std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); // Ok, setup a stack and various params nodestack ns; - double closest_intersection = VTK_FLOAT_MAX; - bool HIT = false; // setup our axis optimized ray box edge stuff - int axis = BSPNode::getDominantAxis(ray_vec); + int axis = BSPNode::getDominantAxis(rayDir); double (*_getMinDist)(const double origin[3], const double dir[3], const double B[6]); switch (axis) { @@ -708,9 +699,7 @@ int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3] _getMinDist = getMinDistNEG_Z; break; } - // // OK, lets walk the tree and find intersections - // ns.push(this->mRoot); while (!ns.empty()) { @@ -726,7 +715,7 @@ int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3] while (node->mChild[0]) // this must be a parent node { // Which child node is closest to ray origin - given direction - node->Classify(p1, ray_vec, tDist, Near, Mid, Far); + node->Classify(p1, rayDir, tDist, Near, Mid, Far); // if the distance to the far edge of the near box is > tmax, no need to test far box // (we still need to test Mid because it may overlap slightly) if ((tDist > tmax) || (tDist <= 0)) // <=0 for ray on edge @@ -761,124 +750,118 @@ int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3] node = Near; } } - double t_hit, ipt[3]; // Ok, so we're a leaf node, first check the BBox against the ray // then test the candidates in our sorted ray direction order - _tmin = tmin; - _tmax = tmax; - // if (node->RayMinMaxT(p1, ray_vec, _tmin, _tmax)) { - // Was the closest point on the box was > intersection point - // if (_tmax>closest_intersection) break; - // for (int i = 0; i < node->num_cells; i++) { - vtkIdType cell_ID = node->sorted_cell_lists[axis][i]; - // - if (_getMinDist(p1, ray_vec, CellBounds[cell_ID]) > closest_intersection) + cId = node->sorted_cell_lists[axis][i]; + if (!cellHasBeenVisited[cId]) { - break; - } - // - ctmin = _tmin; - ctmax = _tmax; - if (BSPNode::RayMinMaxT(CellBounds[cell_ID], p1, ray_vec, ctmin, ctmax)) - { - if (this->IntersectCellInternal(cell_ID, p1, p2, tol, t_hit, ipt, pcoords, subId)) + cellHasBeenVisited[cId] = true; + this->GetCellBounds(cId, cellBoundsPtr); + if (_getMinDist(p1, rayDir, cellBoundsPtr) > tBest) + { + break; + } + // check whether we intersect the cell bounds + int hitCellBounds = + vtkBox::IntersectBox(cellBoundsPtr, p1, rayDir, hitCellBoundsPosition, tHitCell, tol); + if (hitCellBounds) { - if (t_hit < closest_intersection) + this->DataSet->GetCell(cId, cell); + if (cell->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) { - HIT = true; - closest_intersection = t_hit; - cellId = cell_ID; - x[0] = ipt[0]; - x[1] = ipt[1]; - x[2] = ipt[2]; + if (t < tBest) + { + tBest = t; + xBest[0] = x[0]; + xBest[1] = x[1]; + xBest[2] = x[2]; + pCoordsBest[0] = pcoords[0]; + pCoordsBest[1] = pcoords[1]; + pCoordsBest[2] = pcoords[2]; + subIdBest = subId; + cellIdBest = cId; + } } } } } - // } } - if (HIT) + // If a cell has been intersected, recover the information and return. + if (cellIdBest >= 0) { - t = closest_intersection; + this->DataSet->GetCell(cellIdBest, cell); + t = tBest; + x[0] = xBest[0]; + x[1] = xBest[1]; + x[2] = xBest[2]; + pcoords[0] = pCoordsBest[0]; + pcoords[1] = pCoordsBest[1]; + pcoords[2] = pCoordsBest[2]; + subId = subIdBest; + cellId = cellIdBest; + return 1; } - // - return HIT; + return 0; } + //------------------------------------------------------------------------------ -typedef std::pair Intersection; -// -struct Isort : public std::binary_function +struct IntersectionInfo { - bool operator()(const Intersection& x, const Intersection& y) { return x.first < y.first; } + vtkIdType CellId; + std::array IntersectionPoint; + double T; + + IntersectionInfo(vtkIdType cellId, double x[3], double t) + : CellId(cellId) + , IntersectionPoint({ x[0], x[1], x[2] }) + , T(t) + { + } }; + //------------------------------------------------------------------------------ -int vtkModifiedBSPTree::IntersectWithLine( - const double p1[3], const double p2[3], const double tol, vtkPoints* points, vtkIdList* cellIds) +int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3], const double tol, + vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) { - // - BSPNode *node, *Near, *Mid, *Far; - double ctmin, ctmax, tmin, tmax, _tmin, _tmax, tDist, pcoords[3]; - double ray_vec[3] = { p2[0] - p1[0], p2[1] - p1[1], p2[2] - p1[2] }; - int subId; - // this->BuildLocatorIfNeeded(); - // - // Does ray pass through root BBox - tmin = 0; - tmax = 1; - if (!this->mRoot->RayMinMaxT(p1, ray_vec, tmin, tmax)) + // Initialize the list of points/cells + if (points) { - return false; + points->Reset(); } - // Ok, setup a stack and various params - nodestack ns; - double closest_intersection = VTK_FLOAT_MAX; - bool HIT = false; - // setup our axis optimized ray box edge stuff - int axis = BSPNode::getDominantAxis(ray_vec); - double (*_getMinDist)(const double origin[3], const double dir[3], const double B[6]); - switch (axis) + if (cellIds) { - case POS_X: - _getMinDist = getMinDistPOS_X; - break; - case NEG_X: - _getMinDist = getMinDistNEG_X; - break; - case POS_Y: - _getMinDist = getMinDistPOS_Y; - break; - case NEG_Y: - _getMinDist = getMinDistNEG_Y; - break; - case POS_Z: - _getMinDist = getMinDistPOS_Z; - break; - default: - _getMinDist = getMinDistNEG_Z; - break; + cellIds->Reset(); } + BSPNode *node, *Near, *Mid, *Far; + double tmin, tmax, tDist, tHitCell; + double rayDir[3], x0[3], x1[3], hitCellBoundsPosition[3], cellBounds[6], *cellBoundsPtr; + cellBoundsPtr = cellBounds; + vtkMath::Subtract(p2, p1, rayDir); + double* bounds = this->mRoot->Bounds; + vtkIdType cId; + int plane0, plane1, subId; + double t, x[3], pcoords[3]; - // - // we will sort intersections by t, so keep track using these lists - // - std::vector t_list; - vtkSmartPointer tempPoints; - vtkSmartPointer tempIds; - if (points) - { - tempPoints = vtkSmartPointer::New(); - } - if (cellIds) + // Does ray pass through root BBox + if (vtkBox::IntersectWithLine(bounds, p1, p2, tmin, tmax, x0, x1, plane0, plane1) == 0) { - tempIds = vtkSmartPointer::New(); + return 0; // No intersections possible, line is outside the locator } - int icount = 0; - // + + // Initialize intersection query array if necessary. This is done + // locally to ensure thread safety. + std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); + + // Ok, setup a stack and various params + nodestack ns; + // setup our axis optimized ray box edge stuff + int axis = BSPNode::getDominantAxis(rayDir); + // we will sort intersections by t, so keep track using these lists + std::vector cellIntersections; // OK, lets walk the tree and find intersections - // ns.push(this->mRoot); while (!ns.empty()) { @@ -894,7 +877,7 @@ int vtkModifiedBSPTree::IntersectWithLine( while (node->mChild[0]) { // this must be a parent node // Which child node is closest to ray origin - given direction - node->Classify(p1, ray_vec, tDist, Near, Mid, Far); + node->Classify(p1, rayDir, tDist, Near, Mid, Far); // if the distance to the far edge of the near box is > tmax, no need to test far box // (we still need to test Mid because it may overlap slightly) if ((tDist > tmax) || (tDist <= 0)) @@ -929,103 +912,76 @@ int vtkModifiedBSPTree::IntersectWithLine( node = Near; } } - double t_hit, ipt[3]; // Ok, so we're a leaf node, first check the BBox against the ray // then test the candidates in our sorted ray direction order - _tmin = tmin; - _tmax = tmax; - // if (node->RayMinMaxT(p1, ray_vec, _tmin, _tmax)) { - // Was the closest point on the box > intersection point - // if (_tmax>closest_intersection) break; - // for (int i = 0; i < node->num_cells; i++) { - vtkIdType cell_ID = node->sorted_cell_lists[axis][i]; - // - if (_getMinDist(p1, ray_vec, CellBounds[cell_ID]) > closest_intersection) + cId = node->sorted_cell_lists[axis][i]; + if (!cellHasBeenVisited[cId]) { - break; - } - // - ctmin = _tmin; - ctmax = _tmax; - if (BSPNode::RayMinMaxT(CellBounds[cell_ID], p1, ray_vec, ctmin, ctmax)) - { - if (this->IntersectCellInternal(cell_ID, p1, p2, tol, t_hit, ipt, pcoords, subId)) + cellHasBeenVisited[cId] = true; + this->GetCellBounds(cId, cellBoundsPtr); + // check whether we intersect the cell bounds + int hitCellBounds = + vtkBox::IntersectBox(cellBoundsPtr, p1, rayDir, hitCellBoundsPosition, tHitCell, tol); + + if (hitCellBounds) { - if (points) + // Note because of cellHasBeenVisited[], we know this cId is unique + if (cell) { - tempPoints->InsertNextPoint(ipt); + this->DataSet->GetCell(cId, cell); + if (cell->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) + { + cellIntersections.emplace_back(cId, x, t); + } } - if (cellIds) + else { - tempIds->InsertNextId(cell_ID); + cellIntersections.emplace_back(cId, hitCellBoundsPosition, tHitCell); } - t_list.emplace_back(t_hit, icount++); - HIT = true; } } } - // } } - if (HIT) + // if we had intersections, sort them by increasing t + if (!cellIntersections.empty()) { - std::sort(t_list.begin(), t_list.end(), Isort()); - int N = static_cast(t_list.size()); + vtkIdType numIntersections = static_cast(cellIntersections.size()); + std::sort(cellIntersections.begin(), cellIntersections.end(), + [&](const IntersectionInfo& a, const IntersectionInfo b) { return a.T < b.T; }); if (points) { - points->SetNumberOfPoints(N); + points->SetNumberOfPoints(numIntersections); + for (vtkIdType i = 0; i < numIntersections; ++i) + { + points->SetPoint(i, cellIntersections[i].IntersectionPoint.data()); + } } if (cellIds) { - cellIds->SetNumberOfIds(N); - } - for (int n = 0; n < N; n++) - { - Intersection& i = t_list[n]; - if (points) - { - points->SetPoint(n, tempPoints->GetPoint(i.second)); - } - if (cellIds) + cellIds->SetNumberOfIds(numIntersections); + for (vtkIdType i = 0; i < numIntersections; ++i) { - cellIds->SetId(n, tempIds->GetId(i.second)); + cellIds->SetId(i, cellIntersections[i].CellId); } } + return 1; } - // - return HIT; -} -//------------------------------------------------------------------------------ -int vtkModifiedBSPTree::IntersectCellInternal(vtkIdType cell_ID, const double p1[3], - const double p2[3], const double tol, double& t, double ipt[3], double pcoords[3], int& subId) -{ - this->DataSet->GetCell(cell_ID, this->GenericCell); - return this->GenericCell->IntersectWithLine( - const_cast(p1), const_cast(p2), tol, t, ipt, pcoords, subId); -} -////////////////////////////////////////////////////////////////////////////// -// FindCell stuff -////////////////////////////////////////////////////////////////////////////// -//------------------------------------------------------------------------------ -vtkIdType vtkModifiedBSPTree::FindCell( - double x[3], double tol2, vtkGenericCell* cell, double pcoords[3], double* weights) -{ - int subId; - return this->FindCell(x, tol2, cell, subId, pcoords, weights); + return 0; } + //------------------------------------------------------------------------------ vtkIdType vtkModifiedBSPTree::FindCell( double x[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { - // this->BuildLocatorIfNeeded(); - // // check if x outside of bounds if (!vtkAbstractCellLocator::IsInBounds(this->mRoot->Bounds, x)) { return -1; } + vtkIdType cellId; nodestack ns; BSPNode* node; ns.push(this->mRoot); @@ -1038,38 +994,37 @@ vtkIdType vtkModifiedBSPTree::FindCell( if (node->mChild[0]) { // this must be a parent node if (node->mChild[0]->Inside(x)) + { ns.push(node->mChild[0]); + } if (node->mChild[1] && node->mChild[1]->Inside(x)) + { ns.push(node->mChild[1]); + } if (node->mChild[2]->Inside(x)) + { ns.push(node->mChild[2]); + } } else { // a leaf, so test the cells for (int i = 0; i < node->num_cells; i++) { - int cell_ID = node->sorted_cell_lists[0][i]; - // - if (vtkAbstractCellLocator::IsInBounds(CellBounds[cell_ID], x)) + cellId = node->sorted_cell_lists[0][i]; + if (vtkAbstractCellLocator::InsideCellBounds(x, cellId)) { - this->DataSet->GetCell(cell_ID, cell); + this->DataSet->GetCell(cellId, cell); if (cell->EvaluatePosition(x, closestPoint, subId, pcoords, dist2, weights) == 1) { - return cell_ID; + return cellId; } - // if (dist2CellBounds[cell_ID], x); -} + //------------------------------------------------------------------------------ vtkIdListCollection* vtkModifiedBSPTree::GetLeafNodeCellInformation() { @@ -1113,6 +1068,7 @@ vtkIdListCollection* vtkModifiedBSPTree::GetLeafNodeCellInformation() } return LeafCellsList; } + //------------------------------------------------------------------------------ void vtkModifiedBSPTree::PrintSelf(ostream& os, vtkIndent indent) { @@ -1157,302 +1113,7 @@ void BSPNode::Classify(const double origin[3], const double dir[3], double& rDis } rDist = (tDivDirection) ? tOriginToDivPlane / tDivDirection : VTK_FLOAT_MAX; } -//------------------------------------------------------------------------------ -// Update the two t values for the ray against the box, return false if misses -bool BSPNode::RayMinMaxT( - const double origin[3], const double dir[3], double& rTmin, double& rTmax) const -{ - double tT; - // X-Axis - if (dir[0] < -Epsilon_) - { // ray travelling in -x direction - tT = (this->Bounds[0] - origin[0]) / dir[0]; - if (tT < rTmin) - { - return (false); // ray already left of box. Can't hit - } - if (tT <= rTmax) - { - rTmax = tT; // update new tmax - } - tT = (this->Bounds[1] - origin[0]) / dir[0]; // distance to right edge - if (tT >= rTmin) - { // can't see this ever happening - if (tT > rTmax) - { - return false; // clip start of ray to right edge - } - rTmin = tT; - } - } - else if (dir[0] > Epsilon_) - { - tT = (this->Bounds[1] - origin[0]) / dir[0]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (this->Bounds[0] - origin[0]) / dir[0]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (origin[0] < this->Bounds[0] || origin[0] > this->Bounds[1]) - { - return (false); - } - // Y-Axis - if (dir[1] < -Epsilon_) - { - tT = (this->Bounds[2] - origin[1]) / dir[1]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (this->Bounds[3] - origin[1]) / dir[1]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (dir[1] > Epsilon_) - { - tT = (this->Bounds[3] - origin[1]) / dir[1]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (this->Bounds[2] - origin[1]) / dir[1]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (origin[1] < this->Bounds[2] || origin[1] > this->Bounds[3]) - { - return (false); - } - // Z-Axis - if (dir[2] < -Epsilon_) - { - tT = (this->Bounds[4] - origin[2]) / dir[2]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (this->Bounds[5] - origin[2]) / dir[2]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (dir[2] > Epsilon_) - { - tT = (this->Bounds[5] - origin[2]) / dir[2]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (this->Bounds[4] - origin[2]) / dir[2]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (origin[2] < this->Bounds[4] || origin[2] > this->Bounds[5]) - { - return (false); - } - return (true); -} -//------------------------------------------------------------------------------ -// Update the two t values for the ray against the box, return false if misses -bool BSPNode::RayMinMaxT( - const double bounds[6], const double origin[3], const double dir[3], double& rTmin, double& rTmax) -{ - double tT; - // X-Axis - if (dir[0] < -Epsilon_) - { // ray travelling in -x direction - tT = (bounds[0] - origin[0]) / dir[0]; // Ipoint less than minT - ray outside box! - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; // update new tmax - } - tT = (bounds[1] - origin[0]) / dir[0]; // distance to right edge - if (tT >= rTmin) - { // can't see this ever happening - if (tT > rTmax) - { - return false; // clip start of ray to right edge - } - rTmin = tT; - } - } - else if (dir[0] > Epsilon_) - { - tT = (bounds[1] - origin[0]) / dir[0]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[0] - origin[0]) / dir[0]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (origin[0] < bounds[0] || origin[0] > bounds[1]) - { - return (false); - } - // Y-Axis - if (dir[1] < -Epsilon_) - { - tT = (bounds[2] - origin[1]) / dir[1]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - rTmax = tT; - tT = (bounds[3] - origin[1]) / dir[1]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (dir[1] > Epsilon_) - { - tT = (bounds[3] - origin[1]) / dir[1]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[2] - origin[1]) / dir[1]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (origin[1] < bounds[2] || origin[1] > bounds[3]) - { - return (false); - } - // Z-Axis - if (dir[2] < -Epsilon_) - { - tT = (bounds[4] - origin[2]) / dir[2]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[5] - origin[2]) / dir[2]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (dir[2] > Epsilon_) - { - tT = (bounds[5] - origin[2]) / dir[2]; - if (tT < rTmin) - { - return (false); - } - if (tT <= rTmax) - { - rTmax = tT; - } - tT = (bounds[4] - origin[2]) / dir[2]; - if (tT >= rTmin) - { - if (tT > rTmax) - { - return (false); - } - rTmin = tT; - } - } - else if (origin[2] < bounds[4] || origin[2] > bounds[5]) - { - return (false); - } - return (true); -} + //------------------------------------------------------------------------------ bool BSPNode::Inside(double point[3]) const { diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.h b/Filters/FlowPaths/vtkModifiedBSPTree.h index dbcaffdc803d..6e0f257f3468 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.h +++ b/Filters/FlowPaths/vtkModifiedBSPTree.h @@ -101,10 +101,9 @@ * - MaxLevel (default 8) * - NumberOfCellsPerNode (default 32) * - UseExistingSearchStructure (default false) - * - LazyEvaluation (default true) + * - CacheCellBounds (default true) * * vtkModifiedBSPTree does NOT utilize the following parameters: - * - CacheCellBounds (always cached) * - Automatic * - Tolerance * - RetainCellLists @@ -176,7 +175,7 @@ class VTKFILTERSFLOWPATHS_EXPORT vtkModifiedBSPTree : public vtkAbstractCellLoca public: ///@{ /** - * Standard Type-Macro + * Standard methods to print and obtain type-related information. */ vtkTypeMacro(vtkModifiedBSPTree, vtkAbstractCellLocator); void PrintSelf(ostream& os, vtkIndent indent) override; @@ -191,36 +190,11 @@ public: using vtkAbstractCellLocator::FindCell; using vtkAbstractCellLocator::IntersectWithLine; - /** - * Free tree memory - */ - void FreeSearchStructure() override; - - /** - * Build Tree - */ - void BuildLocator() override; - - /** - * Generate BBox representation of Nth level - */ - void GenerateRepresentation(int level, vtkPolyData* pd) override; - - /** - * Generate BBox representation of all leaf nodes - */ - virtual void GenerateRepresentationLeafs(vtkPolyData* pd); - - /** - * Return intersection point (if any) AND the cell which was intersected by - * the finite line. Uses fast tree-search BBox rejection tests. - */ - int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], - double pcoords[3], int& subId, vtkIdType& cellId) override; - /** * Return intersection point (if any) AND the cell which was intersected by * the finite line. The cell is returned as a cell id and as a generic cell. + * + * For other IntersectWithLine signatures, see vtkAbstractCellLocator. */ int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; @@ -228,26 +202,38 @@ public: /** * Take the passed line segment and intersect it with the data set. * The return value of the function is 0 if no intersections were found. - * For each intersection found, the vtkPoints and CellIds objects - * have the relevant information added in order of intersection increasing - * from ray start to end. If either vtkPoints or CellIds are nullptr - * pointers, then no information is generated for that list. + * For each intersection with the bounds of a cell or with a cell (if a cell is provided), + * the points and cellIds have the relevant information added sorted by t. + * If points or cellIds are nullptr pointers, then no information is generated for that list. + * + * For other IntersectWithLine signatures, see vtkAbstractCellLocator. */ - virtual int IntersectWithLine(const double p1[3], const double p2[3], const double tol, - vtkPoints* points, vtkIdList* cellIds); + int IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, + vtkIdList* cellIds, vtkGenericCell* cell) override; - ///@{ /** - * Test a point to find if it is inside a cell. Returns the cellId if inside - * or -1 if not. + * Take the passed line segment and intersect it with the data set. + * For each intersection with the bounds of a cell, the cellIds + * have the relevant information added sort by t. If cellIds is nullptr + * pointer, then no information is generated for that list. + * + * Reimplemented from vtkAbstractCellLocator to showcase that it's a supported function. */ - vtkIdType FindCell( - double x[3], double tol2, vtkGenericCell* GenCell, double pcoords[3], double* weights) override; - vtkIdType FindCell(double x[3], double tol2, vtkGenericCell* GenCell, int& subId, - double pcoords[3], double* weights) override; - ///@} + void FindCellsAlongLine( + const double p1[3], const double p2[3], double tolerance, vtkIdList* cellsIds) override + { + this->Superclass::FindCellsAlongLine(p1, p2, tolerance, cellsIds); + } - bool InsideCellBounds(double x[3], vtkIdType cell_ID) override; + /** + * Find the cell containing a given point. returns -1 if no cell found + * the cell parameters are copied into the supplied variables, a cell must + * be provided to store the information. + * + * For other FindCell signatures, see vtkAbstractCellLocator. + */ + vtkIdType FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* GenCell, int& subId, + double pcoords[3], double* weights) override; /** * After subdivision has completed, one may wish to query the tree to find @@ -256,6 +242,21 @@ public: */ vtkIdListCollection* GetLeafNodeCellInformation(); + /** + * Generate BBox representation of all leaf nodes + */ + virtual void GenerateRepresentationLeafs(vtkPolyData* pd); + + ///@{ + /** + * Satisfy vtkLocator abstract interface. + */ + void GenerateRepresentation(int level, vtkPolyData* pd) override; + void FreeSearchStructure() override; + void BuildLocator() override; + void ForceBuildLocator() override; + ///@} + protected: vtkModifiedBSPTree(); ~vtkModifiedBSPTree() override; @@ -270,16 +271,7 @@ protected: void Subdivide(BSPNode* node, Sorted_cell_extents_Lists* lists, vtkDataSet* dataSet, vtkIdType nCells, int depth, int maxlevel, vtkIdType maxCells, int& MaxDepth); - // We provide a function which does the cell/ray test so that - // it can be overridden by subclasses to perform special treatment - // (Example : Particles stored in tree, have no dimension, so we must - // override the cell test to return a value based on some particle size - virtual int IntersectCellInternal(vtkIdType cell_ID, const double p1[3], const double p2[3], - const double tol, double& t, double ipt[3], double pcoords[3], int& subId); - - void BuildLocatorIfNeeded(); - void ForceBuildLocator(); - void BuildLocatorInternal(); + void BuildLocatorInternal() override; private: vtkModifiedBSPTree(const vtkModifiedBSPTree&) = delete; @@ -348,15 +340,9 @@ protected: // Order nodes as near/mid far relative to ray void Classify(const double origin[3], const double dir[3], double& rDist, BSPNode*& Near, BSPNode*& Mid, BSPNode*& Far) const; - // Test ray against node BBox : clip t values to extremes - bool RayMinMaxT(const double origin[3], const double dir[3], double& rTmin, double& rTmax) const; - // friend class vtkModifiedBSPTree; - friend class vtkParticleBoxTree; public: - static bool VTKFILTERSFLOWPATHS_EXPORT RayMinMaxT(const double bounds[6], const double origin[3], - const double dir[3], double& rTmin, double& rTmax); static int VTKFILTERSFLOWPATHS_EXPORT getDominantAxis(const double dir[3]); }; diff --git a/Filters/General/vtkOBBTree.cxx b/Filters/General/vtkOBBTree.cxx index 441ba92a557e..b175a25ddf33 100644 --- a/Filters/General/vtkOBBTree.cxx +++ b/Filters/General/vtkOBBTree.cxx @@ -958,25 +958,22 @@ int vtkOBBTree::IntersectWithLine(const double a0[3], const double a1[3], double } } // end while - // even though we may not have intersected with the line we at least give - // the best intersection result. It's on the calling function to check - // the return value in order to interpret the results. - t = tBest; - x[0] = xBest[0]; - x[1] = xBest[1]; - x[2] = xBest[2]; - pcoords[0] = pcoordsBest[0]; - pcoords[1] = pcoordsBest[1]; - pcoords[2] = pcoordsBest[2]; - subId = subIdBest; - cellId = cellIdBest; - - if (cellIdBest < 0) - { - // didn't find an intersection - return 0; + // If a cell has been intersected, recover the information and return. + if (cellIdBest >= 0) + { + this->DataSet->GetCell(cellIdBest, cell); + t = tBest; + x[0] = xBest[0]; + x[1] = xBest[1]; + x[2] = xBest[2]; + pcoords[0] = pcoordsBest[0]; + pcoords[1] = pcoordsBest[1]; + pcoords[2] = pcoordsBest[2]; + subId = subIdBest; + cellId = cellIdBest; + return 1; } - return 1; + return 0; } void vtkOBBNode::DebugPrintTree(int level, double* leaf_vol, int* minCells, int* maxCells) diff --git a/Filters/General/vtkOBBTree.h b/Filters/General/vtkOBBTree.h index 7c69dfc4755f..92e30a9fdb96 100644 --- a/Filters/General/vtkOBBTree.h +++ b/Filters/General/vtkOBBTree.h @@ -73,9 +73,6 @@ class vtkMatrix4x4; // Special class defines node for the OBB tree -// - -// class VTKFILTERSGENERAL_EXPORT vtkOBBNode { //;prevent man page generation public: @@ -94,13 +91,16 @@ private: vtkOBBNode& operator=(const vtkOBBNode& rhs) = delete; }; -// - class VTKFILTERSGENERAL_EXPORT vtkOBBTree : public vtkAbstractCellLocator { public: + ///@{ + /** + * Standard methods to print and obtain type-related information. + */ vtkTypeMacro(vtkOBBTree, vtkAbstractCellLocator); void PrintSelf(ostream& os, vtkIndent indent) override; + ///@} /** * Construct with automatic computation of divisions, averaging @@ -111,6 +111,15 @@ public: // Re-use any superclass signatures that we don't override. using vtkAbstractCellLocator::IntersectWithLine; + /** + * Return the first intersection of the specified line segment with + * the OBB tree, as well as information about the cell which the + * line segment intersected. A return value of 1 indicates an intersection + * and 0 indicates no intersection. + */ + int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], + double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; + /** * Take the passed line segment and intersect it with the data set. * This method assumes that the data set is a vtkPolyData that describes @@ -125,15 +134,6 @@ public: int IntersectWithLine( const double a0[3], const double a1[3], vtkPoints* points, vtkIdList* cellIds) override; - /** - * Return the first intersection of the specified line segment with - * the OBB tree, as well as information about the cell which the - * line segment intersected. A return value of 1 indicates an intersection - * and 0 indicates no intersection. - */ - int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], - double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; - /** * Compute an OBB from the list of points given. Return the corner point * and the three axes defining the orientation of the OBB. Also return diff --git a/Filters/ParallelDIY2/vtkProbeLineFilter.cxx b/Filters/ParallelDIY2/vtkProbeLineFilter.cxx index 971216a36c93..235e21e1d835 100644 --- a/Filters/ParallelDIY2/vtkProbeLineFilter.cxx +++ b/Filters/ParallelDIY2/vtkProbeLineFilter.cxx @@ -94,7 +94,6 @@ struct vtkProbeLineFilter::vtkInternals vtkNew locator; locator->SetDataSet(ds); - locator->UseDiagonalLengthToleranceOff(); locator->SetTolerance(tolerance); locator->BuildLocator(); -- GitLab From 186626d5c7957973d00ca987517010953129bece Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 28 Apr 2022 23:39:00 -0400 Subject: [PATCH 0077/1015] Cell/Point Locators: UseExistingSearchStructure for all locators UseExistingSearchStructure, when enabled (default off), it allows the locator to NOT be built again. This is useful when you have a dataset that either changes because the FieldData (PointData/CellData) changed or the actual dataset object changed but it's actually the same geometry (useful when a dataset has timesteps). When this flag is on you need to use ForceBuildLocator() to rebuild the locator, if your dataset changes. To accommodate this functionality now all locators implement the following functions: BuildLocator/ForceBuildLocator/BuildLocatorInternal. Also, the LazyEvaluation flag for CellLocators has been deprecated because it was not used, except in vtkCachingInterpolatedVelocityField, and also it could lead to thread-safety issues when 2 threads would call e.g. FindCell and both threads would try to build the locator. --- Common/DataModel/vtkAbstractCellLocator.cxx | 3 - Common/DataModel/vtkAbstractCellLocator.h | 27 ++---- Common/DataModel/vtkCellLocator.cxx | 81 +++++++---------- Common/DataModel/vtkCellLocator.h | 11 ++- Common/DataModel/vtkCellTreeLocator.cxx | 75 ++++++++-------- Common/DataModel/vtkCellTreeLocator.h | 13 +-- .../vtkIncrementalOctreePointLocator.cxx | 31 +++++-- .../vtkIncrementalOctreePointLocator.h | 8 ++ Common/DataModel/vtkKdTree.cxx | 58 +++++++++++- Common/DataModel/vtkKdTree.h | 7 ++ Common/DataModel/vtkKdTreePointLocator.cxx | 63 ++++++++++--- Common/DataModel/vtkKdTreePointLocator.h | 3 + Common/DataModel/vtkLocator.cxx | 8 ++ Common/DataModel/vtkLocator.h | 27 +++++- Common/DataModel/vtkOctreePointLocator.cxx | 37 +++++--- Common/DataModel/vtkOctreePointLocator.h | 9 ++ Common/DataModel/vtkPointLocator.cxx | 90 +++++++++++-------- Common/DataModel/vtkPointLocator.h | 3 + Common/DataModel/vtkStaticCellLocator.cxx | 31 +++++-- Common/DataModel/vtkStaticCellLocator.h | 6 +- Common/DataModel/vtkStaticPointLocator.cxx | 48 ++++++---- Common/DataModel/vtkStaticPointLocator.h | 3 + Common/DataModel/vtkStaticPointLocator2D.cxx | 32 +++++-- Common/DataModel/vtkStaticPointLocator2D.h | 3 + .../vtkCachingInterpolatedVelocityField.cxx | 1 - Filters/FlowPaths/vtkModifiedBSPTree.cxx | 80 ++++++++--------- Filters/FlowPaths/vtkModifiedBSPTree.h | 6 +- .../Testing/Python/TestCellLocators.py | 2 - Filters/General/vtkOBBTree.cxx | 77 +++++++++++----- Filters/General/vtkOBBTree.h | 6 +- .../Core/Testing/Python/PickerWithLocator.py | 1 - Rendering/Core/vtkCellPicker.h | 4 +- 32 files changed, 555 insertions(+), 299 deletions(-) diff --git a/Common/DataModel/vtkAbstractCellLocator.cxx b/Common/DataModel/vtkAbstractCellLocator.cxx index 4e739dae769d..c2c93d10b6e8 100644 --- a/Common/DataModel/vtkAbstractCellLocator.cxx +++ b/Common/DataModel/vtkAbstractCellLocator.cxx @@ -38,7 +38,6 @@ vtkAbstractCellLocator::vtkAbstractCellLocator() this->RetainCellLists = 1; this->NumberOfCellsPerNode = 32; this->UseExistingSearchStructure = 0; - this->LazyEvaluation = 0; } //------------------------------------------------------------------------------ @@ -294,6 +293,4 @@ void vtkAbstractCellLocator::PrintSelf(ostream& os, vtkIndent indent) os << indent << "Cache Cell Bounds: " << this->CacheCellBounds << "\n"; os << indent << "Retain Cell Lists: " << (this->RetainCellLists ? "On\n" : "Off\n"); os << indent << "Number of Cells Per Bucket: " << this->NumberOfCellsPerNode << "\n"; - os << indent << "UseExistingSearchStructure: " << this->UseExistingSearchStructure << "\n"; - os << indent << "LazyEvaluation: " << this->LazyEvaluation << "\n"; } diff --git a/Common/DataModel/vtkAbstractCellLocator.h b/Common/DataModel/vtkAbstractCellLocator.h index 7beb4986a4b7..c2d2be1341ab 100644 --- a/Common/DataModel/vtkAbstractCellLocator.h +++ b/Common/DataModel/vtkAbstractCellLocator.h @@ -38,6 +38,7 @@ #define vtkAbstractCellLocator_h #include "vtkCommonDataModelModule.h" // For export macro +#include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 #include "vtkLocator.h" #include "vtkNew.h" // For vtkNew @@ -96,22 +97,14 @@ public: * If LazyEvaluation is supported, this turns on/off the feature. * if not supported, it is ignored. */ - vtkSetMacro(LazyEvaluation, vtkTypeBool); - vtkGetMacro(LazyEvaluation, vtkTypeBool); - vtkBooleanMacro(LazyEvaluation, vtkTypeBool); - ///@} - - ///@{ - /** - * Some locators support querying a new dataset without rebuilding - * the search structure (typically this may occur when a dataset - * changes due to a time update, but is actually the same topology) - * Turning on this flag enables some locators to skip the rebuilding - * phase - */ - vtkSetMacro(UseExistingSearchStructure, vtkTypeBool); - vtkGetMacro(UseExistingSearchStructure, vtkTypeBool); - vtkBooleanMacro(UseExistingSearchStructure, vtkTypeBool); + VTK_DEPRECATED_IN_9_2_0("This method is deprecated because it can lead to thread-safety issues") + virtual void SetLazyEvaluation(vtkTypeBool) {} + VTK_DEPRECATED_IN_9_2_0("This method is deprecated because it can lead to thread-safety issues") + virtual vtkTypeBool GetLazyEvaluation() { return 0; } + VTK_DEPRECATED_IN_9_2_0("This method is deprecated because it can lead to thread-safety issues") + virtual void LazyEvaluationOn() {} + VTK_DEPRECATED_IN_9_2_0("This method is deprecated because it can lead to thread-safety issues") + virtual void LazyEvaluationOff() {} ///@} /** @@ -348,8 +341,6 @@ protected: int NumberOfCellsPerNode; vtkTypeBool RetainCellLists; vtkTypeBool CacheCellBounds; - vtkTypeBool LazyEvaluation; - vtkTypeBool UseExistingSearchStructure; vtkNew GenericCell; double (*CellBounds)[6]; diff --git a/Common/DataModel/vtkCellLocator.cxx b/Common/DataModel/vtkCellLocator.cxx index c530319b8d13..1a247558ad75 100644 --- a/Common/DataModel/vtkCellLocator.cxx +++ b/Common/DataModel/vtkCellLocator.cxx @@ -12,6 +12,9 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +// VTK_DEPRECATED_IN_9_2_0() warnings for this class. +#define VTK_DEPRECATION_LEVEL 0 + #include "vtkCellLocator.h" #include "vtkBox.h" @@ -162,17 +165,15 @@ void vtkCellLocator::GetBucketIndices(const double x[3], int ijk[3]) int vtkCellLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); if (this->Tree == nullptr) { - // empty tree, most likely there are no cells in the input data set return 0; } double* bounds = this->Bounds; double* h = this->H; double t0, t1, x0[3], x1[3], tHitCell; double hitCellBoundsPosition[3], cellBounds[6], *cellBoundsPtr; - cellBoundsPtr = cellBounds; double octantBounds[6]; int prod = this->NumberOfDivisions * this->NumberOfDivisions; vtkIdType cellIdBest = -1, cId, i, idx, numberOfCellsInBucket; @@ -237,6 +238,7 @@ int vtkCellLocator::IntersectWithLine(const double p1[3], const double p2[3], do cellHasBeenVisited[cId] = true; // check whether we intersect the cell bounds + cellBoundsPtr = cellBounds; this->GetCellBounds(cId, cellBoundsPtr); hitCellBounds = vtkBox::IntersectBox(cellBoundsPtr, p1, rayDir, hitCellBoundsPosition, tHitCell, tol); @@ -348,10 +350,9 @@ vtkIdType vtkCellLocator::FindClosestPointWithinRadius(double x[3], double radiu double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); if (this->Tree == nullptr) { - // empty tree, most likely there are no cells in the input data set return 0; } int i; @@ -605,8 +606,6 @@ void vtkCellLocator::GetOverlappingBuckets(vtkNeighborCells& buckets, const doub int leafStart, kFactor, jFactor; int numberOfBucketsPerPlane, jkSkipFlag, kSkipFlag; - this->BuildLocatorIfNeeded(); - numberOfBucketsPerPlane = this->NumberOfDivisions * this->NumberOfDivisions; leafStart = this->NumberOfOctants - numberOfBucketsPerPlane * this->NumberOfDivisions; @@ -721,43 +720,24 @@ vtkIdList* vtkCellLocator::GetCells(int octantId) //------------------------------------------------------------------------------ void vtkCellLocator::BuildLocator() { - if (this->LazyEvaluation) + // don't rebuild if build time is newer than modified and dataset modified time + if (this->Tree && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) { return; } - this->ForceBuildLocator(); -} - -//------------------------------------------------------------------------------ -void vtkCellLocator::BuildLocatorIfNeeded() -{ - if (this->LazyEvaluation) + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->Tree && this->UseExistingSearchStructure) { - if (!this->Tree || (this->MTime > this->BuildTime)) - { - this->Modified(); - vtkDebugMacro(<< "Forcing BuildLocator"); - this->ForceBuildLocator(); - } + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; } + this->BuildLocatorInternal(); } //------------------------------------------------------------------------------ void vtkCellLocator::ForceBuildLocator() { - // don't rebuild if build time is newer than modified and dataset modified time - if ((this->Tree) && (this->BuildTime > this->MTime) && - (this->BuildTime > this->DataSet->GetMTime())) - { - return; - } - // don't rebuild if UseExistingSearchStructure is ON and a tree structure already exists - if ((this->Tree) && this->UseExistingSearchStructure) - { - this->BuildTime.Modified(); - vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); - return; - } this->BuildLocatorInternal(); } @@ -931,6 +911,11 @@ void vtkCellLocator::MarkParents(void* a, int i, int j, int k, int ndivs, int le //------------------------------------------------------------------------------ void vtkCellLocator::GenerateRepresentation(int level, vtkPolyData* pd) { + this->BuildLocator(); + if (this->Tree == nullptr) + { + return; + } vtkPoints* pts; vtkCellArray* polys; int l, i, j, k, ii, boundary[3]; @@ -938,14 +923,6 @@ void vtkCellLocator::GenerateRepresentation(int level, vtkPolyData* pd) vtkIdList *inside, *Inside[3] = { nullptr, nullptr, nullptr }; int numDivs = 1; - this->BuildLocatorIfNeeded(); - - if (this->Tree == nullptr) - { - vtkErrorMacro(<< "No tree to generate representation from"); - return; - } - pts = vtkPoints::New(); pts->Allocate(5000); polys = vtkCellArray::New(); @@ -1155,10 +1132,9 @@ double vtkCellLocator::Distance2ToBounds(const double x[3], double bounds[6]) vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); if (this->Tree == nullptr) { - // empty tree, most likely there are no cells in the input data set return -1; } // check if x outside of bounds @@ -1206,14 +1182,15 @@ vtkIdType vtkCellLocator::FindCell(double x[3], double vtkNotUsed(tol2), vtkGene //------------------------------------------------------------------------------ void vtkCellLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) { - this->BuildLocatorIfNeeded(); - - cells->Reset(); + this->BuildLocator(); if (this->Tree == nullptr) { - // empty tree, most likely there are no cells in the input data set return; } + if (cells) + { + cells->Reset(); + } // Get the locator locations for the two extreme corners of the bounding box double p1[3], p2[3], *p[2]; @@ -1248,7 +1225,10 @@ void vtkCellLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) { for (idx = 0; idx < cellIds->GetNumberOfIds(); idx++) { - cells->InsertUniqueId(cellIds->GetId(idx)); + if (cells) + { + cells->InsertUniqueId(cellIds->GetId(idx)); + } } } } @@ -1275,10 +1255,9 @@ struct IntersectionInfo int vtkCellLocator::IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); if (this->Tree == nullptr) { - // empty tree, most likely there are no cells in the input data set return 0; } // Initialize the list of points/cells diff --git a/Common/DataModel/vtkCellLocator.h b/Common/DataModel/vtkCellLocator.h index 7078378a7680..3b481e8ae25a 100644 --- a/Common/DataModel/vtkCellLocator.h +++ b/Common/DataModel/vtkCellLocator.h @@ -33,7 +33,6 @@ * - NumberOfCellsPerNode (default 25) * - CacheCellBounds (default false) * - UseExistingSearchStructure (default false) - * - LazyEvaluation (default false) * * vtkCellLocator does NOT utilize the following parameters: * - Tolerance @@ -48,6 +47,7 @@ #include "vtkAbstractCellLocator.h" #include "vtkCommonDataModelModule.h" // For export macro +#include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 #include "vtkNew.h" // For vtkNew class vtkIntArray; @@ -168,12 +168,13 @@ public: */ void FreeSearchStructure() override; void BuildLocator() override; - virtual void BuildLocatorIfNeeded(); - virtual void ForceBuildLocator(); - virtual void BuildLocatorInternal(); + void ForceBuildLocator() override; void GenerateRepresentation(int level, vtkPolyData* pd) override; ///@} + VTK_DEPRECATED_IN_9_2_0("This method is deprecated because LazyEvaluation has been deprecated") + virtual void BuildLocatorIfNeeded() {} + /** * Get the cells in a particular bucket. */ @@ -189,6 +190,8 @@ protected: vtkCellLocator(); ~vtkCellLocator() override; + void BuildLocatorInternal() override; + //------------------------------------------------------------------------------ class vtkNeighborCells { diff --git a/Common/DataModel/vtkCellTreeLocator.cxx b/Common/DataModel/vtkCellTreeLocator.cxx index 92b159ab4cee..8d39affe62bf 100644 --- a/Common/DataModel/vtkCellTreeLocator.cxx +++ b/Common/DataModel/vtkCellTreeLocator.cxx @@ -12,6 +12,9 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +// VTK_DEPRECATED_IN_9_2_0() warnings for this class. +#define VTK_DEPRECATION_LEVEL 0 + #include "vtkCellTreeLocator.h" #include "vtkBoundingBox.h" @@ -540,31 +543,15 @@ vtkCellTreeLocator::~vtkCellTreeLocator() } //------------------------------------------------------------------------------ -void vtkCellTreeLocator::BuildLocatorIfNeeded() -{ - if (this->LazyEvaluation) - { - if (!this->Tree || (this->MTime > this->BuildTime)) - { - this->Modified(); - vtkDebugMacro(<< "Forcing BuildLocator"); - this->ForceBuildLocator(); - } - } -} - -//------------------------------------------------------------------------------ -void vtkCellTreeLocator::ForceBuildLocator() +void vtkCellTreeLocator::BuildLocator() { - // // don't rebuild if build time is newer than modified and dataset modified time - if ((this->Tree) && (this->BuildTime > this->MTime) && - (this->BuildTime > this->DataSet->GetMTime())) + if (this->Tree && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) { return; } - // don't rebuild if UseExistingSearchStructure is ON and a tree structure already exists - if ((this->Tree) && this->UseExistingSearchStructure) + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->Tree && this->UseExistingSearchStructure) { this->BuildTime.Modified(); vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); @@ -573,6 +560,12 @@ void vtkCellTreeLocator::ForceBuildLocator() this->BuildLocatorInternal(); } +//------------------------------------------------------------------------------ +void vtkCellTreeLocator::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + //------------------------------------------------------------------------------ void vtkCellTreeLocator::BuildLocatorInternal() { @@ -595,21 +588,15 @@ void vtkCellTreeLocator::BuildLocatorInternal() this->BuildTime.Modified(); } -//------------------------------------------------------------------------------ -void vtkCellTreeLocator::BuildLocator() -{ - if (this->LazyEvaluation) - { - return; - } - this->ForceBuildLocator(); -} - //------------------------------------------------------------------------------ vtkIdType vtkCellTreeLocator::FindCell( double pos[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); + if (this->Tree == nullptr) + { + return -1; + } // check if pos outside of bounds if (!vtkAbstractCellLocator::IsInBounds(this->Tree->DataBBox, pos)) { @@ -672,7 +659,11 @@ double _getMinDistNEG_Z(const double origin[3], const double dir[3], const doubl int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); + if (this->Tree == nullptr) + { + return 0; + } vtkCellTreeNode *node, *nearNode, *farNode; double tmin, tmax, tDist, tHitCell, tBest = VTK_DOUBLE_MAX, xBest[3], pCoordsBest[3]; double rayDir[3], x0[3], x1[3], hitCellBoundsPosition[3]; @@ -843,7 +834,11 @@ struct IntersectionInfo int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); + if (this->Tree == nullptr) + { + return 0; + } // Initialize the list of points/cells if (points) { @@ -1180,8 +1175,11 @@ static void AddBox(vtkPolyData* pd, double* bounds, int level) //------------------------------------------------------------------------------ void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) { - this->BuildLocatorIfNeeded(); - // + this->BuildLocator(); + if (this->Tree == nullptr) + { + return; + } nodeinfostack ns; boxlist bl; // @@ -1226,8 +1224,11 @@ void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) //------------------------------------------------------------------------------ void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) { - this->BuildLocatorIfNeeded(); - // + this->BuildLocator(); + if (this->Tree == nullptr) + { + return; + } nodeinfostack ns; double cellBounds[6], *cellBoundsPtr; cellBoundsPtr = cellBounds; diff --git a/Common/DataModel/vtkCellTreeLocator.h b/Common/DataModel/vtkCellTreeLocator.h index deeb39241791..4ccd66170fed 100644 --- a/Common/DataModel/vtkCellTreeLocator.h +++ b/Common/DataModel/vtkCellTreeLocator.h @@ -29,7 +29,6 @@ * - NumberOfCellsPerNode (default 8) * - CacheCellBounds (default false) * - UseExistingSearchStructure (default false) - * - LazyEvaluation (default false) * * vtkCellTreeLocator does NOT utilize the following parameters: * - Automatic @@ -50,6 +49,7 @@ #include "vtkAbstractCellLocator.h" #include "vtkCommonDataModelModule.h" // For export macro +#include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 #include // Needed for internal class class vtkCellPointTraversal; @@ -139,13 +139,14 @@ public: * Satisfy vtkLocator abstract interface. */ void FreeSearchStructure() override; - void GenerateRepresentation(int level, vtkPolyData* pd) override; - virtual void BuildLocatorInternal(); - virtual void BuildLocatorIfNeeded(); - virtual void ForceBuildLocator(); void BuildLocator() override; + void ForceBuildLocator() override; + void GenerateRepresentation(int level, vtkPolyData* pd) override; ///@} + VTK_DEPRECATED_IN_9_2_0("This method is deprecated because LazyEvaluation has been deprecated") + virtual void BuildLocatorIfNeeded() {} + class vtkCellTree; class vtkCellTreeNode; /** @@ -208,6 +209,8 @@ protected: vtkCellTreeLocator(); ~vtkCellTreeLocator() override; + void BuildLocatorInternal() override; + int getDominantAxis(const double dir[3]); // Order nodes as near/far relative to ray diff --git a/Common/DataModel/vtkIncrementalOctreePointLocator.cxx b/Common/DataModel/vtkIncrementalOctreePointLocator.cxx index c9cdd1f6ad0e..d4f0bc1baeb6 100644 --- a/Common/DataModel/vtkIncrementalOctreePointLocator.cxx +++ b/Common/DataModel/vtkIncrementalOctreePointLocator.cxx @@ -500,6 +500,31 @@ vtkIdType vtkIncrementalOctreePointLocator::FindClosestPointInSphere(const doubl //------------------------------------------------------------------------------ void vtkIncrementalOctreePointLocator::BuildLocator() +{ + // don't rebuild if build time is newer than modified and dataset modified time + if (this->OctreeRootNode && this->BuildTime > this->MTime && + this->BuildTime > this->DataSet->GetMTime()) + { + return; + } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->OctreeRootNode && this->UseExistingSearchStructure) + { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; + } + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkIncrementalOctreePointLocator::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkIncrementalOctreePointLocator::BuildLocatorInternal() { // assume point location is necessary for vtkPointSet data only if (!this->DataSet || !this->DataSet->IsA("vtkPointSet")) @@ -517,12 +542,6 @@ void vtkIncrementalOctreePointLocator::BuildLocator() vtkErrorMacro(<< "failure to support 64-bit point ids"); return; } - - // construct an octree only if necessary - if ((this->BuildTime > this->MTime) && (this->BuildTime > this->DataSet->GetMTime())) - { - return; - } vtkDebugMacro(<< "Creating an incremental octree"); // build an octree by populating it with check-free insertion of point ids diff --git a/Common/DataModel/vtkIncrementalOctreePointLocator.h b/Common/DataModel/vtkIncrementalOctreePointLocator.h index f7831b8cf7ae..5cc52daae830 100644 --- a/Common/DataModel/vtkIncrementalOctreePointLocator.h +++ b/Common/DataModel/vtkIncrementalOctreePointLocator.h @@ -165,9 +165,15 @@ public: /** * Load points from a dataset to construct an octree for point location. * This function resorts to InitPointInsertion() to fulfill some of the work. + * This will NOT do anything if StaticDataSet is on. */ void BuildLocator() override; + /** + * Build the locator from the input dataset (even if UseExistingSearchStructure is on). + */ + void ForceBuildLocator() override; + /** * Given a point x, return the id of the closest point. BuildLocator() should * have been called prior to this function. This method is thread safe if @@ -347,6 +353,8 @@ private: vtkIncrementalOctreeNode* OctreeRootNode; int NumberOfNodes; + void BuildLocatorInternal() override; + /** * Delete all descendants of a node. */ diff --git a/Common/DataModel/vtkKdTree.cxx b/Common/DataModel/vtkKdTree.cxx index 3fdc95342a55..f2da8ab522f4 100644 --- a/Common/DataModel/vtkKdTree.cxx +++ b/Common/DataModel/vtkKdTree.cxx @@ -188,6 +188,7 @@ private: }; } +//------------------------------------------------------------------------------ vtkStandardNewMacro(vtkKdTree); //------------------------------------------------------------------------------ @@ -334,6 +335,7 @@ vtkKdTree::~vtkKdTree() this->SetCalculator(nullptr); this->SetCuts(nullptr); } + //------------------------------------------------------------------------------ void vtkKdTree::SetCalculator(vtkKdNode* kd) { @@ -363,11 +365,13 @@ void vtkKdTree::SetCalculator(vtkKdNode* kd) this->BSPCalculator = vtkBSPIntersections::New(); this->BSPCalculator->SetCuts(this->Cuts); } + //------------------------------------------------------------------------------ void vtkKdTree::SetCuts(vtkBSPCuts* cuts) { this->SetCuts(cuts, 1); } + //------------------------------------------------------------------------------ void vtkKdTree::SetCuts(vtkBSPCuts* cuts, int userDefined) { @@ -421,13 +425,14 @@ void vtkKdTree::SetCuts(vtkBSPCuts* cuts, int userDefined) // the geometry has changed, and we check for that with NewGeometry in // BuildLocator. We Modify() for changes that definitely require a // rebuild of the tree, like changing the depth of the k-d tree. - void vtkKdTree::SetDataSet(vtkDataSet* set) { this->DataSets->RemoveAllItems(); this->AddDataSet(set); + this->Modified(); } +//------------------------------------------------------------------------------ void vtkKdTree::AddDataSet(vtkDataSet* set) { if (set == nullptr) @@ -443,28 +448,31 @@ void vtkKdTree::AddDataSet(vtkDataSet* set) this->DataSets->AddItem(set); } +//------------------------------------------------------------------------------ void vtkKdTree::RemoveDataSet(vtkDataSet* set) { this->DataSets->RemoveItem(set); } +//------------------------------------------------------------------------------ void vtkKdTree::RemoveDataSet(int index) { this->DataSets->RemoveItem(index); } +//------------------------------------------------------------------------------ void vtkKdTree::RemoveAllDataSets() { this->DataSets->RemoveAllItems(); } //------------------------------------------------------------------------------ - int vtkKdTree::GetNumberOfDataSets() { return this->DataSets->GetNumberOfItems(); } +//------------------------------------------------------------------------------ int vtkKdTree::GetDataSetIndex(vtkDataSet* set) { // This is weird, but IsItemPresent returns the index + 1 (so that 0 @@ -472,11 +480,13 @@ int vtkKdTree::GetDataSetIndex(vtkDataSet* set) return this->DataSets->IsItemPresent(set) - 1; } +//------------------------------------------------------------------------------ vtkDataSet* vtkKdTree::GetDataSet(int index) { return this->DataSets->GetItem(index); } +//------------------------------------------------------------------------------ int vtkKdTree::GetDataSetsNumberOfCells(int from, int to) { int numCells = 0; @@ -752,8 +762,32 @@ void vtkKdTree::ComputeCellCenter(vtkCell* cell, double* center, double* weights //------------------------------------------------------------------------------ // Build the kdtree structure based on location of cell centroids. -// void vtkKdTree::BuildLocator() +{ + // don't rebuild if build time is newer than modified and dataset modified time + if (this->Top && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) + { + return; + } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->Top && this->UseExistingSearchStructure) + { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; + } + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkKdTree::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +// Build the kdtree structure based on location of cell centroids. +void vtkKdTree::BuildLocatorInternal() { SCOPETIMER("BuildLocator"); @@ -761,7 +795,7 @@ void vtkKdTree::BuildLocator() int nCells = 0; int i; - if ((this->Top != nullptr) && (this->BuildTime > this->GetMTime()) && (this->NewGeometry() == 0)) + if (this->NewGeometry()) { return; } @@ -919,6 +953,7 @@ void vtkKdTree::BuildLocator() this->UpdateProgress(1.0); } +//------------------------------------------------------------------------------ int vtkKdTree::ProcessUserDefinedCuts(double* minBounds) { SCOPETIMER("ProcessUserDefinedCuts"); @@ -973,6 +1008,7 @@ int vtkKdTree::ProcessUserDefinedCuts(double* minBounds) return 0; } + //------------------------------------------------------------------------------ void vtkKdTree::ZeroNumberOfPoints(vtkKdNode* kd) { @@ -984,6 +1020,7 @@ void vtkKdTree::ZeroNumberOfPoints(vtkKdNode* kd) vtkKdTree::ZeroNumberOfPoints(kd->GetRight()); } } + //------------------------------------------------------------------------------ void vtkKdTree::SetNewBounds(double* bounds) { @@ -1036,6 +1073,7 @@ void vtkKdTree::SetNewBounds(double* bounds) } } } + //------------------------------------------------------------------------------ void vtkKdTree::SetNewBounds_(vtkKdNode* kd, double* b, int* fixDim) { @@ -1072,6 +1110,7 @@ void vtkKdTree::SetNewBounds_(vtkKdNode* kd, double* b, int* fixDim) } } } + //------------------------------------------------------------------------------ vtkKdNode* vtkKdTree::CopyTree(vtkKdNode* kd) { @@ -1081,6 +1120,7 @@ vtkKdNode* vtkKdTree::CopyTree(vtkKdNode* kd) return top; } + //------------------------------------------------------------------------------ void vtkKdTree::CopyChildNodes(vtkKdNode* to, vtkKdNode* from) { @@ -1098,6 +1138,7 @@ void vtkKdTree::CopyChildNodes(vtkKdNode* to, vtkKdNode* from) vtkKdTree::CopyChildNodes(to->GetRight(), from->GetRight()); } } + //------------------------------------------------------------------------------ void vtkKdTree::CopyKdNode(vtkKdNode* to, vtkKdNode* from) { @@ -1138,6 +1179,7 @@ int vtkKdTree::ComputeLevel(vtkKdNode* kd) } return iam; } + //------------------------------------------------------------------------------ void vtkKdTree::SetDataBoundsToSpatialBounds(vtkKdNode* kd) { @@ -1150,6 +1192,7 @@ void vtkKdTree::SetDataBoundsToSpatialBounds(vtkKdNode* kd) vtkKdTree::SetDataBoundsToSpatialBounds(kd->GetRight()); } } + //------------------------------------------------------------------------------ int vtkKdTree::SelectCutDirection(vtkKdNode* kd) { @@ -1206,6 +1249,7 @@ int vtkKdTree::SelectCutDirection(vtkKdNode* kd) } return dim; } + //------------------------------------------------------------------------------ int vtkKdTree::DivideTest(int size, int level) { @@ -1227,6 +1271,7 @@ int vtkKdTree::DivideTest(int size, int level) return 1; } + //------------------------------------------------------------------------------ int vtkKdTree::DivideRegion(vtkKdNode* kd, float* c1, int* ids, int level) { @@ -1641,6 +1686,7 @@ int vtkKdTree::SelfOrder(int startId, vtkKdNode* kd) return nextId; } +//------------------------------------------------------------------------------ void vtkKdTree::BuildRegionList() { SCOPETIMER("BuildRegionList"); @@ -1665,6 +1711,7 @@ void vtkKdTree::BuildLocatorFromPoints(vtkPointSet* pointset) this->BuildLocatorFromPoints(pointset->GetPoints()); } +//------------------------------------------------------------------------------ void vtkKdTree::BuildLocatorFromPoints(vtkPoints* ptArray) { this->BuildLocatorFromPoints(&ptArray, 1); @@ -2895,6 +2942,8 @@ int vtkKdTree::NewGeometry() return itsNew; } + +//------------------------------------------------------------------------------ int vtkKdTree::NewGeometry(vtkDataSet** sets, int numSets) { int newGeometry = 0; @@ -4494,6 +4543,7 @@ int vtkKdTree::ViewOrderRegionsFromPosition_( return size; } + //------------------------------------------------------------------------------ int vtkKdTree::ViewOrderRegionsFromPosition_P( vtkKdNode* node, vtkIntArray* list, vtkIntArray* IdsOfInterest, const double pos[3], int nextId) diff --git a/Common/DataModel/vtkKdTree.h b/Common/DataModel/vtkKdTree.h index f0ef8e89bfb0..ac2412e0a214 100644 --- a/Common/DataModel/vtkKdTree.h +++ b/Common/DataModel/vtkKdTree.h @@ -405,6 +405,11 @@ public: */ void BuildLocator() override; + /** + * Build the locator from the input dataset (even if UseExistingSearchStructure is on). + */ + void ForceBuildLocator() override; + /** * Given a list of region IDs, determine the decomposition of * these regions into the minimal number of convex subregions. Due @@ -632,6 +637,8 @@ protected: vtkKdTree(); ~vtkKdTree() override; + void BuildLocatorInternal() override; + vtkBSPIntersections* BSPCalculator; int UserDefinedCuts; diff --git a/Common/DataModel/vtkKdTreePointLocator.cxx b/Common/DataModel/vtkKdTreePointLocator.cxx index 09254a575273..45e9e64a212a 100644 --- a/Common/DataModel/vtkKdTreePointLocator.cxx +++ b/Common/DataModel/vtkKdTreePointLocator.cxx @@ -18,13 +18,16 @@ #include "vtkObjectFactory.h" #include "vtkPointSet.h" +//------------------------------------------------------------------------------ vtkStandardNewMacro(vtkKdTreePointLocator); +//------------------------------------------------------------------------------ vtkKdTreePointLocator::vtkKdTreePointLocator() { this->KdTree = nullptr; } +//------------------------------------------------------------------------------ vtkKdTreePointLocator::~vtkKdTreePointLocator() { if (this->KdTree) @@ -33,6 +36,7 @@ vtkKdTreePointLocator::~vtkKdTreePointLocator() } } +//------------------------------------------------------------------------------ vtkIdType vtkKdTreePointLocator::FindClosestPoint(const double x[3]) { this->BuildLocator(); @@ -41,6 +45,7 @@ vtkIdType vtkKdTreePointLocator::FindClosestPoint(const double x[3]) return this->KdTree->FindClosestPoint(x[0], x[1], x[2], dist2); } +//------------------------------------------------------------------------------ vtkIdType vtkKdTreePointLocator::FindClosestPointWithinRadius( double radius, const double x[3], double& dist2) { @@ -48,18 +53,21 @@ vtkIdType vtkKdTreePointLocator::FindClosestPointWithinRadius( return this->KdTree->FindClosestPointWithinRadius(radius, x, dist2); } +//------------------------------------------------------------------------------ void vtkKdTreePointLocator::FindClosestNPoints(int N, const double x[3], vtkIdList* result) { this->BuildLocator(); this->KdTree->FindClosestNPoints(N, x, result); } +//------------------------------------------------------------------------------ void vtkKdTreePointLocator::FindPointsWithinRadius(double R, const double x[3], vtkIdList* result) { this->BuildLocator(); this->KdTree->FindPointsWithinRadius(R, x, result); } +//------------------------------------------------------------------------------ void vtkKdTreePointLocator::FreeSearchStructure() { if (this->KdTree) @@ -69,29 +77,62 @@ void vtkKdTreePointLocator::FreeSearchStructure() } } +//------------------------------------------------------------------------------ void vtkKdTreePointLocator::BuildLocator() { - if (!this->KdTree) + // don't rebuild if build time is newer than modified and dataset modified time + if (this->KdTree && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) { - vtkPointSet* pointSet = vtkPointSet::SafeDownCast(this->GetDataSet()); - if (!pointSet) - { - vtkErrorMacro("vtkKdTreePointLocator requires a PointSet to build locator."); - return; - } - this->KdTree = vtkKdTree::New(); - this->KdTree->BuildLocatorFromPoints(pointSet); - this->KdTree->GetBounds(this->Bounds); - this->Modified(); + return; } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->KdTree && this->UseExistingSearchStructure) + { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; + } + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkKdTreePointLocator::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkKdTreePointLocator::BuildLocatorInternal() +{ + if (!this->DataSet || (this->DataSet->GetNumberOfPoints()) < 1) + { + vtkErrorMacro(<< "No points to build"); + return; + } + // Prepare + this->FreeSearchStructure(); + + vtkPointSet* pointSet = vtkPointSet::SafeDownCast(this->GetDataSet()); + if (!pointSet) + { + vtkErrorMacro("vtkKdTreePointLocator requires a PointSet to build locator."); + return; + } + this->KdTree = vtkKdTree::New(); + this->KdTree->SetUseExistingSearchStructure(this->UseExistingSearchStructure); + this->KdTree->BuildLocatorFromPoints(pointSet); + this->KdTree->GetBounds(this->Bounds); + this->BuildTime.Modified(); } +//------------------------------------------------------------------------------ void vtkKdTreePointLocator::GenerateRepresentation(int level, vtkPolyData* pd) { this->BuildLocator(); this->KdTree->GenerateRepresentation(level, pd); } +//------------------------------------------------------------------------------ void vtkKdTreePointLocator::PrintSelf(ostream& os, vtkIndent indent) { this->Superclass::PrintSelf(os, indent); diff --git a/Common/DataModel/vtkKdTreePointLocator.h b/Common/DataModel/vtkKdTreePointLocator.h index 62b1040b0fe8..2f930c5c8ec8 100644 --- a/Common/DataModel/vtkKdTreePointLocator.h +++ b/Common/DataModel/vtkKdTreePointLocator.h @@ -79,6 +79,7 @@ public: */ void FreeSearchStructure() override; void BuildLocator() override; + void ForceBuildLocator() override; void GenerateRepresentation(int level, vtkPolyData* pd) override; ///@} @@ -86,6 +87,8 @@ protected: vtkKdTreePointLocator(); ~vtkKdTreePointLocator() override; + void BuildLocatorInternal() override; + vtkKdTree* KdTree; private: diff --git a/Common/DataModel/vtkLocator.cxx b/Common/DataModel/vtkLocator.cxx index 04bbca9b14bb..339f52a67a46 100644 --- a/Common/DataModel/vtkLocator.cxx +++ b/Common/DataModel/vtkLocator.cxx @@ -17,8 +17,10 @@ #include "vtkDataSet.h" #include "vtkGarbageCollector.h" +//------------------------------------------------------------------------------ vtkCxxSetObjectMacro(vtkLocator, DataSet, vtkDataSet); +//------------------------------------------------------------------------------ vtkLocator::vtkLocator() { this->DataSet = nullptr; @@ -26,8 +28,10 @@ vtkLocator::vtkLocator() this->Automatic = 1; this->MaxLevel = 8; this->Level = 8; + this->UseExistingSearchStructure = 0; } +//------------------------------------------------------------------------------ vtkLocator::~vtkLocator() { // commented out because of compiler problems in g++ @@ -35,12 +39,14 @@ vtkLocator::~vtkLocator() this->SetDataSet(nullptr); } +//------------------------------------------------------------------------------ void vtkLocator::Initialize() { // free up hash table this->FreeSearchStructure(); } +//------------------------------------------------------------------------------ void vtkLocator::Update() { if (!this->DataSet) @@ -54,6 +60,7 @@ void vtkLocator::Update() } } +//------------------------------------------------------------------------------ void vtkLocator::PrintSelf(ostream& os, vtkIndent indent) { this->Superclass::PrintSelf(os, indent); @@ -72,6 +79,7 @@ void vtkLocator::PrintSelf(ostream& os, vtkIndent indent) os << indent << "Build Time: " << this->BuildTime.GetMTime() << "\n"; os << indent << "MaxLevel: " << this->MaxLevel << "\n"; os << indent << "Level: " << this->Level << "\n"; + os << indent << "UseExistingSearchStructure: " << this->UseExistingSearchStructure << "\n"; } //------------------------------------------------------------------------------ diff --git a/Common/DataModel/vtkLocator.h b/Common/DataModel/vtkLocator.h index 41bba893aa7b..460fd7e280b7 100644 --- a/Common/DataModel/vtkLocator.h +++ b/Common/DataModel/vtkLocator.h @@ -125,6 +125,23 @@ public: vtkGetMacro(Tolerance, double); ///@} + ///@{ + /** + * Get/Set UseExistingSearchStructure, which when enabled it allows the locator to NOT be + * built again. This is useful when you have a dataset that either changes because + * the FieldData (PointData/CellData) changed or the actual dataset object changed + * but it's actually the same geometry (useful when a dataset has timesteps). + * + * When this flag is on you need to use ForceBuildLocator() to rebuild the locator, + * if your dataset changes. + * + * Default is off. + */ + vtkSetMacro(UseExistingSearchStructure, vtkTypeBool); + vtkGetMacro(UseExistingSearchStructure, vtkTypeBool); + vtkBooleanMacro(UseExistingSearchStructure, vtkTypeBool); + ///@} + /** * Cause the locator to rebuild itself if it or its input dataset has * changed. @@ -137,10 +154,15 @@ public: virtual void Initialize(); /** - * Build the locator from the input dataset. + * Build the locator from the input dataset. This will NOT do anything if StaticDataSet is on. */ virtual void BuildLocator() = 0; + /** + * Build the locator from the input dataset (even if StaticDataSet is on). + */ + virtual void ForceBuildLocator() = 0; + /** * Free the memory required for the spatial data structure. */ @@ -172,7 +194,10 @@ protected: vtkLocator(); ~vtkLocator() override; + virtual void BuildLocatorInternal() = 0; + vtkDataSet* DataSet; + vtkTypeBool UseExistingSearchStructure; vtkTypeBool Automatic; // boolean controls automatic subdivision (or uses user spec.) double Tolerance; // for performing merging int MaxLevel; diff --git a/Common/DataModel/vtkOctreePointLocator.cxx b/Common/DataModel/vtkOctreePointLocator.cxx index cc9e85d7c7d6..49d9e36fef2b 100644 --- a/Common/DataModel/vtkOctreePointLocator.cxx +++ b/Common/DataModel/vtkOctreePointLocator.cxx @@ -22,14 +22,11 @@ #include "vtkCellArray.h" #include "vtkCommand.h" #include "vtkDataSet.h" -#include "vtkFloatArray.h" #include "vtkIdList.h" #include "vtkIdTypeArray.h" -#include "vtkIntArray.h" #include "vtkMath.h" #include "vtkObjectFactory.h" #include "vtkOctreePointLocatorNode.h" -#include "vtkPointSet.h" #include "vtkPoints.h" #include "vtkPolyData.h" @@ -295,19 +292,38 @@ void vtkOctreePointLocator::DivideRegion(vtkOctreePointLocatorNode* node, int* o //------------------------------------------------------------------------------ void vtkOctreePointLocator::BuildLocator() { - if (!this->GetDataSet()) + // don't rebuild if build time is newer than modified and dataset modified time + if (this->Top && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) { - vtkErrorMacro("Must set a valid data set first."); + return; } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->Top && this->UseExistingSearchStructure) + { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; + } + this->BuildLocatorInternal(); +} - int numPoints = this->GetDataSet()->GetNumberOfPoints(); +//------------------------------------------------------------------------------ +void vtkOctreePointLocator::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} - if (numPoints < 1) +//------------------------------------------------------------------------------ +void vtkOctreePointLocator::BuildLocatorInternal() +{ + if (!this->DataSet || this->DataSet->GetNumberOfPoints() == 0) { - vtkErrorMacro(<< "No points to build from."); + vtkErrorMacro("No data set"); return; } + int numPoints = this->GetDataSet()->GetNumberOfPoints(); + if (numPoints >= VTK_INT_MAX) { // When point IDs are stored in an "int" instead of a vtkIdType, @@ -320,11 +336,6 @@ void vtkOctreePointLocator::BuildLocator() } vtkDebugMacro(<< "Creating octree"); - - if ((this->BuildTime > this->MTime) && (this->BuildTime > this->DataSet->GetMTime())) - { - return; - } this->FreeSearchStructure(); // Fix bounds - (1) push out a little if flat diff --git a/Common/DataModel/vtkOctreePointLocator.h b/Common/DataModel/vtkOctreePointLocator.h index a8925ad752ad..6816bc4e8523 100644 --- a/Common/DataModel/vtkOctreePointLocator.h +++ b/Common/DataModel/vtkOctreePointLocator.h @@ -116,9 +116,16 @@ public: * Create the octree decomposition of the cells of the data set * or data sets. Cells are assigned to octree spatial regions * based on the location of their centroids. + * + * This will NOT do anything if StaticDataSet is on. */ void BuildLocator() override; + /** + * Build the locator from the input dataset (even if UseExistingSearchStructure is on). + */ + void ForceBuildLocator() override; + ///@{ /** * Return the Id of the point that is closest to the given point. @@ -189,6 +196,8 @@ protected: vtkOctreePointLocator(); ~vtkOctreePointLocator() override; + void BuildLocatorInternal() override; + vtkOctreePointLocatorNode* Top; vtkOctreePointLocatorNode** LeafNodeList; // indexed by region/node ID diff --git a/Common/DataModel/vtkPointLocator.cxx b/Common/DataModel/vtkPointLocator.cxx index 2c7f96b678bf..ebf4ed52a915 100644 --- a/Common/DataModel/vtkPointLocator.cxx +++ b/Common/DataModel/vtkPointLocator.cxx @@ -170,6 +170,11 @@ void vtkPointLocator::ComputePerformanceFactors() // Given a position x, return the id of the point closest to it. vtkIdType vtkPointLocator::FindClosestPoint(const double x[3]) { + this->BuildLocator(); + if (this->HashTable == nullptr) + { + return -1; + } int i, j; double minDist2; double dist2 = VTK_DOUBLE_MAX; @@ -180,16 +185,7 @@ vtkIdType vtkPointLocator::FindClosestPoint(const double x[3]) int ijk[3], *nei; vtkNeighborPoints buckets; - if (!this->DataSet || this->DataSet->GetNumberOfPoints() < 1) - { - return -1; - } - - this->BuildLocator(); // will subdivide if modified; otherwise returns - - // // Find bucket point is in. - // this->GetBucketIndices(x, ijk); // @@ -268,6 +264,11 @@ vtkIdType vtkPointLocator::FindClosestPointWithinRadius( vtkIdType vtkPointLocator::FindClosestPointWithinRadius( double radius, const double x[3], double inputDataLength, double& dist2) { + this->BuildLocator(); + if (this->HashTable == nullptr) + { + return -1; + } int i, j; double pt[3]; vtkIdType ptId, nids, closest = -1; @@ -281,8 +282,6 @@ vtkIdType vtkPointLocator::FindClosestPointWithinRadius( int ii, radiusLevels[3], radiusLevel, prevMinLevel[3], prevMaxLevel[3]; vtkNeighborPoints buckets; - this->BuildLocator(); // will subdivide if modified; otherwise returns - dist2 = -1.0; radius2 = radius * radius; minDist2 = 1.01 * radius2; // something slightly bigger.... @@ -517,6 +516,11 @@ static double GetMax(const double foo[8]) //------------------------------------------------------------------------------ void vtkPointLocator::FindDistributedPoints(int N, const double x[3], vtkIdList* result, int M) { + this->BuildLocator(); + if (this->HashTable == nullptr) + { + return; + } int i, j; double dist2; double pt[3]; @@ -530,8 +534,6 @@ void vtkPointLocator::FindDistributedPoints(int N, const double x[3], vtkIdList* // clear out the result result->Reset(); - - this->BuildLocator(); // will subdivide if modified; otherwise returns // // Make sure candidate point is in bounds. If not, it is outside. // @@ -658,6 +660,11 @@ void vtkPointLocator::FindDistributedPoints(int N, const double x[3], vtkIdList* //------------------------------------------------------------------------------ void vtkPointLocator::FindClosestNPoints(int N, const double x[3], vtkIdList* result) { + this->BuildLocator(); + if (this->HashTable == nullptr) + { + return; + } int i, j; double dist2; double pt[3]; @@ -670,11 +677,7 @@ void vtkPointLocator::FindClosestNPoints(int N, const double x[3], vtkIdList* re // clear out the result result->Reset(); - this->BuildLocator(); // will subdivide if modified; otherwise returns - - // // Find bucket point is in. - // this->GetBucketIndices(x, ijk); // there are two steps, first a simple expanding wave of buckets until @@ -772,6 +775,11 @@ void vtkPointLocator::FindClosestNPoints(int N, const double x[3], vtkIdList* re //------------------------------------------------------------------------------ void vtkPointLocator::FindPointsWithinRadius(double R, const double x[3], vtkIdList* result) { + this->BuildLocator(); + if (this->HashTable == nullptr) + { + return; + } int i, j; double dist2; double pt[3]; @@ -781,10 +789,7 @@ void vtkPointLocator::FindPointsWithinRadius(double R, const double x[3], vtkIdL double R2 = R * R; vtkNeighborPoints buckets; - this->BuildLocator(); // will subdivide if modified; otherwise returns - // // Find bucket point is in. - // this->GetBucketIndices(x, ijk); // get all buckets within a distance @@ -817,12 +822,36 @@ void vtkPointLocator::FindPointsWithinRadius(double R, const double x[3], vtkIdL } } +//------------------------------------------------------------------------------ +void vtkPointLocator::BuildLocator() +{ + // don't rebuild if build time is newer than modified and dataset modified time + if (this->HashTable && this->BuildTime > this->MTime && + this->BuildTime > this->DataSet->GetMTime()) + { + return; + } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->HashTable && this->UseExistingSearchStructure) + { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; + } + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkPointLocator::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + //------------------------------------------------------------------------------ // Method to form subdivision of space based on the points provided and // subject to the constraints of levels and NumberOfPointsPerBucket. // The result is directly addressable and of uniform subdivision. -// -void vtkPointLocator::BuildLocator() +void vtkPointLocator::BuildLocatorInternal() { int ndivs[3]; vtkIdType idx; @@ -831,12 +860,6 @@ void vtkPointLocator::BuildLocator() double x[3]; typedef vtkIdList* vtkIdListPtr; - if ((this->HashTable != nullptr) && (this->BuildTime > this->MTime) && - (this->BuildTime > this->DataSet->GetMTime())) - { - return; - } - vtkDebugMacro(<< "Hashing points..."); this->Level = 1; // only single lowest level @@ -845,17 +868,12 @@ void vtkPointLocator::BuildLocator() vtkErrorMacro(<< "No points to subdivide"); return; } - // + // Make sure the appropriate data is available - // - if (this->HashTable) - { - this->FreeSearchStructure(); - } - // + this->FreeSearchStructure(); + // Size the root bucket. Initialize bucket data structure, compute // level and divisions. - // const double* bounds = this->DataSet->GetBounds(); vtkIdType numBuckets = static_cast( static_cast(numPts) / static_cast(this->NumberOfPointsPerBucket)); diff --git a/Common/DataModel/vtkPointLocator.h b/Common/DataModel/vtkPointLocator.h index 387502515759..28a3c543c37c 100644 --- a/Common/DataModel/vtkPointLocator.h +++ b/Common/DataModel/vtkPointLocator.h @@ -240,6 +240,7 @@ public: void Initialize() override; void FreeSearchStructure() override; void BuildLocator() override; + void ForceBuildLocator() override; void GenerateRepresentation(int level, vtkPolyData* pd) override; ///@} @@ -247,6 +248,8 @@ protected: vtkPointLocator(); ~vtkPointLocator() override; + void BuildLocatorInternal() override; + // place points in appropriate buckets void GetBucketNeighbors( vtkNeighborPoints* buckets, const int ijk[3], const int ndivs[3], int level); diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 9a551986f92a..f15ff6d00784 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -1432,15 +1432,31 @@ bool vtkStaticCellLocator::InsideCellBounds(double x[3], vtkIdType cellId) //------------------------------------------------------------------------------ void vtkStaticCellLocator::BuildLocator() { - vtkDebugMacro(<< "Building static cell locator"); - - // Do we need to build? - if ((this->Binner != nullptr) && (this->BuildTime > this->MTime) && - (this->BuildTime > this->DataSet->GetMTime())) + // don't rebuild if build time is newer than modified and dataset modified time + if (this->Binner && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) + { + return; + } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->Binner && this->UseExistingSearchStructure) { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); return; } + this->BuildLocatorInternal(); +} +//------------------------------------------------------------------------------ +void vtkStaticCellLocator::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkStaticCellLocator::BuildLocatorInternal() +{ + vtkDebugMacro(<< "Building static cell locator"); vtkIdType numCells; if (!this->DataSet || (numCells = this->DataSet->GetNumberOfCells()) < 1) { @@ -1449,10 +1465,7 @@ void vtkStaticCellLocator::BuildLocator() } // Prepare - if (this->Binner) - { - this->FreeSearchStructure(); - } + this->FreeSearchStructure(); // The bounding box can be slow int i, ndivs[3]; diff --git a/Common/DataModel/vtkStaticCellLocator.h b/Common/DataModel/vtkStaticCellLocator.h index 2de13093bf36..f47c7d359e48 100644 --- a/Common/DataModel/vtkStaticCellLocator.h +++ b/Common/DataModel/vtkStaticCellLocator.h @@ -29,12 +29,11 @@ * vtkStaticCellLocator utilizes the following parent class parameters: * - Automatic (default true) * - NumberOfCellsPerNode (default 10) + * - UseExistingSearchStructure (default false) * * vtkStaticCellLocator does NOT utilize the following parameters: * - CacheCellBounds (always cached) * - Tolerance - * - UseExistingSearchStructure - * - LazyEvaluation * - Level * - MaxLevel * - RetainCellLists @@ -255,12 +254,15 @@ public: void GenerateRepresentation(int level, vtkPolyData* pd) override; void FreeSearchStructure() override; void BuildLocator() override; + void ForceBuildLocator() override; ///@} protected: vtkStaticCellLocator(); ~vtkStaticCellLocator() override; + void BuildLocatorInternal() override; + double Bounds[6]; // Bounding box of the whole dataset int Divisions[3]; // Number of sub-divisions in x-y-z directions double H[3]; // Width of each bin in x-y-z directions diff --git a/Common/DataModel/vtkStaticPointLocator.cxx b/Common/DataModel/vtkStaticPointLocator.cxx index e986dcfbaefc..70d19a253390 100644 --- a/Common/DataModel/vtkStaticPointLocator.cxx +++ b/Common/DataModel/vtkStaticPointLocator.cxx @@ -1954,23 +1954,41 @@ void vtkStaticPointLocator::FreeSearchStructure() } } +//------------------------------------------------------------------------------ +void vtkStaticPointLocator::BuildLocator() +{ + // don't rebuild if build time is newer than modified and dataset modified time + if (this->Buckets && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) + { + return; + } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->Buckets && this->UseExistingSearchStructure) + { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; + } + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkStaticPointLocator::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + //------------------------------------------------------------------------------ // Method to form subdivision of space based on the points provided and // subject to the constraints of levels and NumberOfPointsPerBucket. // The result is directly addressable and of uniform subdivision. // -void vtkStaticPointLocator::BuildLocator() +void vtkStaticPointLocator::BuildLocatorInternal() { int ndivs[3]; int i; vtkIdType numPts; - if ((this->Buckets != nullptr) && (this->BuildTime > this->MTime) && - (this->BuildTime > this->DataSet->GetMTime())) - { - return; - } - vtkDebugMacro(<< "Hashing points..."); this->Level = 1; // only single lowest level - from superclass @@ -1981,11 +1999,7 @@ void vtkStaticPointLocator::BuildLocator() } // Make sure the appropriate data is available - // - if (this->Buckets) - { - this->FreeSearchStructure(); - } + this->FreeSearchStructure(); // Size the root bucket. Initialize bucket data structure, compute // level and divisions. The GetBounds() method below can be very slow; @@ -2018,7 +2032,6 @@ void vtkStaticPointLocator::BuildLocator() static_cast(ndivs[1]) * static_cast(ndivs[2]); // Compute width of bucket in three directions - // for (i = 0; i < 3; i++) { this->H[i] = (this->Bounds[2 * i + 1] - this->Bounds[2 * i]) / static_cast(ndivs[i]); @@ -2027,7 +2040,6 @@ void vtkStaticPointLocator::BuildLocator() // Instantiate the locator. The type is related to the maximum point id. // This is done for performance (e.g., the sort is faster) and significant // memory savings. - // if (numPts >= VTK_INT_MAX || numBuckets >= VTK_INT_MAX) { this->LargeIds = true; @@ -2049,15 +2061,17 @@ void vtkStaticPointLocator::BuildLocator() // Method to form subdivision of space based on the points provided and // subject to the constraints of levels and NumberOfPointsPerBucket. // The result is directly addressable and of uniform subdivision. -// + void vtkStaticPointLocator::BuildLocator(const double* inBounds) { int ndivs[3]; int i; vtkIdType numPts; - if ((this->Buckets != nullptr) && (this->BuildTime > this->MTime) && - (this->BuildTime > this->DataSet->GetMTime())) + // don't rebuild if build time is newer than modified and dataset modified time + if (this->Buckets && + (this->UseExistingSearchStructure || + (this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()))) { return; } diff --git a/Common/DataModel/vtkStaticPointLocator.h b/Common/DataModel/vtkStaticPointLocator.h index 73d3006107d3..1d5629697e7e 100644 --- a/Common/DataModel/vtkStaticPointLocator.h +++ b/Common/DataModel/vtkStaticPointLocator.h @@ -194,6 +194,7 @@ public: void Initialize() override; void FreeSearchStructure() override; void BuildLocator() override; + void ForceBuildLocator() override; void BuildLocator(const double* inBounds); ///@} @@ -296,6 +297,8 @@ protected: vtkStaticPointLocator(); ~vtkStaticPointLocator() override; + void BuildLocatorInternal() override; + int NumberOfPointsPerBucket; // Used with AutomaticOn to control subdivide int Divisions[3]; // Number of sub-divisions in x-y-z directions double H[3]; // Width of each bucket in x-y-z directions diff --git a/Common/DataModel/vtkStaticPointLocator2D.cxx b/Common/DataModel/vtkStaticPointLocator2D.cxx index c6560c6fcd4c..69e85e30bd2e 100644 --- a/Common/DataModel/vtkStaticPointLocator2D.cxx +++ b/Common/DataModel/vtkStaticPointLocator2D.cxx @@ -1739,23 +1739,41 @@ void vtkStaticPointLocator2D::FreeSearchStructure() } } +//------------------------------------------------------------------------------ +void vtkStaticPointLocator2D::BuildLocator() +{ + // don't rebuild if build time is newer than modified and dataset modified time + if (this->Buckets && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) + { + return; + } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->Buckets && this->UseExistingSearchStructure) + { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; + } + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkStaticPointLocator2D::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + //------------------------------------------------------------------------------ // Method to form subdivision of space based on the points provided and // subject to the constraints of levels and NumberOfPointsPerBucket. // The result is directly addressable and of uniform subdivision. // -void vtkStaticPointLocator2D::BuildLocator() +void vtkStaticPointLocator2D::BuildLocatorInternal() { int ndivs[3]; int i; vtkIdType numPts; - if ((this->Buckets != nullptr) && (this->BuildTime > this->MTime) && - (this->BuildTime > this->DataSet->GetMTime())) - { - return; - } - vtkDebugMacro(<< "Hashing points..."); this->Level = 1; // only single lowest level - from superclass diff --git a/Common/DataModel/vtkStaticPointLocator2D.h b/Common/DataModel/vtkStaticPointLocator2D.h index 90fdfe5d39a1..8a797f641e51 100644 --- a/Common/DataModel/vtkStaticPointLocator2D.h +++ b/Common/DataModel/vtkStaticPointLocator2D.h @@ -186,6 +186,7 @@ public: void Initialize() override; void FreeSearchStructure() override; void BuildLocator() override; + void ForceBuildLocator() override; ///@} /** @@ -279,6 +280,8 @@ protected: vtkStaticPointLocator2D(); ~vtkStaticPointLocator2D() override; + void BuildLocatorInternal() override; + int NumberOfPointsPerBucket; // Used with AutomaticOn to control subdivide int Divisions[2]; // Number of sub-divisions in x-y directions double H[2]; // Width of each bucket in x-y directions diff --git a/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx index e4bc429bd058..905bc881dbb7 100644 --- a/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx @@ -60,7 +60,6 @@ void IVFDataSetInfo::SetDataSet( { this->BSPTree = vtkSmartPointer::New(); } - this->BSPTree->SetLazyEvaluation(1); this->BSPTree->SetDataSet(this->DataSet); this->BSPTree->SetUseExistingSearchStructure(this->StaticDataSet); } diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.cxx b/Filters/FlowPaths/vtkModifiedBSPTree.cxx index 73a554bea873..159b6fd649b8 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.cxx +++ b/Filters/FlowPaths/vtkModifiedBSPTree.cxx @@ -12,6 +12,9 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +// VTK_DEPRECATED_IN_9_2_0() warnings for this class. +#define VTK_DEPRECATION_LEVEL 0 + #include "vtkModifiedBSPTree.h" #include "vtkAppendPolyData.h" @@ -50,8 +53,6 @@ vtkModifiedBSPTree::vtkModifiedBSPTree() this->NumberOfCellsPerNode = 32; this->mRoot = nullptr; this->UseExistingSearchStructure = 0; - this->LazyEvaluation = 1; - // this->npn = this->nln = this->tot_depth = 0; } @@ -65,10 +66,13 @@ vtkModifiedBSPTree::~vtkModifiedBSPTree() //------------------------------------------------------------------------------ void vtkModifiedBSPTree::FreeSearchStructure() { - delete this->mRoot; - this->mRoot = nullptr; - this->Level = 0; - this->npn = this->nln = this->tot_depth = 0; + if (this->mRoot) + { + delete this->mRoot; + this->mRoot = nullptr; + this->Level = 0; + this->npn = this->nln = this->tot_depth = 0; + } } ////////////////////////////////////////////////////////////////////////////// @@ -143,51 +147,30 @@ extern "C" int CompareMax(const void* pA, const void* B) //------------------------------------------------------------------------------ void vtkModifiedBSPTree::BuildLocator() { - if (this->LazyEvaluation) + // don't rebuild if build time is newer than modified and dataset modified time + if (this->mRoot && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) { return; } - this->ForceBuildLocator(); -} - -//------------------------------------------------------------------------------ -void vtkModifiedBSPTree::BuildLocatorIfNeeded() -{ - if (this->LazyEvaluation) + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->mRoot && this->UseExistingSearchStructure) { - if (!this->mRoot || (this->MTime > this->BuildTime)) - { - this->Modified(); - vtkDebugMacro(<< "Forcing BuildLocator"); - this->ForceBuildLocator(); - } + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; } + this->BuildLocatorInternal(); } //------------------------------------------------------------------------------ void vtkModifiedBSPTree::ForceBuildLocator() { - // - // don't rebuild if build time is newer than modified and dataset modified time - if ((this->mRoot) && (this->BuildTime > this->MTime) && - (this->BuildTime > this->DataSet->GetMTime())) - { - return; - } - // don't rebuild if UseExistingSearchStructure is ON and a tree structure already exists - if ((this->mRoot) && this->UseExistingSearchStructure) - { - this->BuildTime.Modified(); - vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); - return; - } this->BuildLocatorInternal(); } //------------------------------------------------------------------------------ void vtkModifiedBSPTree::BuildLocatorInternal() { - // vtkIdType numCells; if (!this->DataSet || (numCells = this->DataSet->GetNumberOfCells()) < 1) { @@ -547,10 +530,14 @@ typedef std::stack> nodestack; //------------------------------------------------------------------------------ void vtkModifiedBSPTree::GenerateRepresentation(int level, vtkPolyData* pd) { + this->BuildLocator(); + if (this->mRoot == nullptr) + { + return; + } nodestack ns; boxlist bl; BSPNode* node; - this->BuildLocatorIfNeeded(); ns.push(this->mRoot); // lets walk the tree and get all the level n node boxes while (!ns.empty()) @@ -656,7 +643,11 @@ int BSPNode::getDominantAxis(const double dir[3]) int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); + if (this->mRoot == nullptr) + { + return 0; + } BSPNode *node, *Near, *Mid, *Far; double tmin, tmax, tDist, tHitCell, tBest = VTK_DOUBLE_MAX, xBest[3], pCoordsBest[3]; double rayDir[3], x0[3], x1[3], hitCellBoundsPosition[3], cellBounds[6], *cellBoundsPtr; @@ -825,7 +816,11 @@ struct IntersectionInfo int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); + if (this->mRoot == nullptr) + { + return 0; + } // Initialize the list of points/cells if (points) { @@ -975,7 +970,11 @@ int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3] vtkIdType vtkModifiedBSPTree::FindCell( double x[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) { - this->BuildLocatorIfNeeded(); + this->BuildLocator(); + if (this->mRoot == nullptr) + { + return -1; + } // check if x outside of bounds if (!vtkAbstractCellLocator::IsInBounds(this->mRoot->Bounds, x)) { @@ -1028,11 +1027,10 @@ vtkIdType vtkModifiedBSPTree::FindCell( //------------------------------------------------------------------------------ vtkIdListCollection* vtkModifiedBSPTree::GetLeafNodeCellInformation() { - if (!this->mRoot) + if (this->mRoot == nullptr) { return nullptr; } - this->BuildLocatorIfNeeded(); // vtkIdListCollection* LeafCellsList = vtkIdListCollection::New(); nodestack ns; diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.h b/Filters/FlowPaths/vtkModifiedBSPTree.h index 6e0f257f3468..28c8c35edb46 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.h +++ b/Filters/FlowPaths/vtkModifiedBSPTree.h @@ -260,19 +260,17 @@ public: protected: vtkModifiedBSPTree(); ~vtkModifiedBSPTree() override; - // + + void BuildLocatorInternal() override; BSPNode* mRoot; // bounding box root node int npn; int nln; int tot_depth; - // // The main subdivision routine void Subdivide(BSPNode* node, Sorted_cell_extents_Lists* lists, vtkDataSet* dataSet, vtkIdType nCells, int depth, int maxlevel, vtkIdType maxCells, int& MaxDepth); - void BuildLocatorInternal() override; - private: vtkModifiedBSPTree(const vtkModifiedBSPTree&) = delete; void operator=(const vtkModifiedBSPTree&) = delete; diff --git a/Filters/General/Testing/Python/TestCellLocators.py b/Filters/General/Testing/Python/TestCellLocators.py index 29b2d934398d..3861f4d4a4db 100755 --- a/Filters/General/Testing/Python/TestCellLocators.py +++ b/Filters/General/Testing/Python/TestCellLocators.py @@ -169,7 +169,6 @@ print("\n") ############################################################# # Time the creation and building of the bsp tree locator3 = vtk.vtkModifiedBSPTree() -locator3.LazyEvaluationOff() locator3.SetDataSet(output) locator3.AutomaticOn() @@ -200,7 +199,6 @@ print("\n") ############################################################# # Time the creation and building of the obb tree locator4 = vtk.vtkOBBTree() -locator4.LazyEvaluationOff() locator4.SetDataSet(output) locator4.AutomaticOn() diff --git a/Filters/General/vtkOBBTree.cxx b/Filters/General/vtkOBBTree.cxx index b175a25ddf33..95fa2104f4a7 100644 --- a/Filters/General/vtkOBBTree.cxx +++ b/Filters/General/vtkOBBTree.cxx @@ -27,8 +27,10 @@ #include +//------------------------------------------------------------------------------ vtkStandardNewMacro(vtkOBBTree); +//------------------------------------------------------------------------------ #define vtkCELLTRIANGLES(CELLPTIDS, TYPE, IDX, PTID0, PTID1, PTID2) \ { \ switch (TYPE) \ @@ -50,6 +52,7 @@ vtkStandardNewMacro(vtkOBBTree); } \ } +//------------------------------------------------------------------------------ vtkOBBNode::vtkOBBNode() { this->Cells = nullptr; @@ -57,6 +60,7 @@ vtkOBBNode::vtkOBBNode() this->Kids = nullptr; } +//------------------------------------------------------------------------------ vtkOBBNode::~vtkOBBNode() { delete[] this->Kids; @@ -66,6 +70,7 @@ vtkOBBNode::~vtkOBBNode() } } +//------------------------------------------------------------------------------ // Construct with automatic computation of divisions, averaging // 25 cells per octant. vtkOBBTree::vtkOBBTree() @@ -80,11 +85,13 @@ vtkOBBTree::vtkOBBTree() this->OBBCount = 0; } +//------------------------------------------------------------------------------ vtkOBBTree::~vtkOBBTree() { this->FreeSearchStructure(); } +//------------------------------------------------------------------------------ void vtkOBBTree::FreeSearchStructure() { if (this->Tree) @@ -95,6 +102,7 @@ void vtkOBBTree::FreeSearchStructure() } } +//------------------------------------------------------------------------------ void vtkOBBTree::DeleteTree(vtkOBBNode* OBBptr) { if (OBBptr->Kids != nullptr) @@ -106,6 +114,7 @@ void vtkOBBTree::DeleteTree(vtkOBBNode* OBBptr) } } +//------------------------------------------------------------------------------ // Compute an OBB from the list of points given. Return the corner point // and the three axes defining the orientation of the OBB. Also return // a sorted list of relative "sizes" of axes for comparison purposes. @@ -225,6 +234,7 @@ void vtkOBBTree::ComputeOBB( } } +//------------------------------------------------------------------------------ // a method to compute the OBB of a dataset without having to go through the // Execute method; It does set void vtkOBBTree::ComputeOBB( @@ -274,6 +284,7 @@ void vtkOBBTree::ComputeOBB( cellList->Delete(); } +//------------------------------------------------------------------------------ // Compute an OBB from the list of cells given. Return the corner point // and the three axes defining the orientation of the OBB. Also return // a sorted list of relative "sizes" of axes for comparison purposes. @@ -452,6 +463,7 @@ void vtkOBBTree::ComputeOBB( } } +//------------------------------------------------------------------------------ // Efficient check for whether a line p1,p2 intersects with triangle // pt1,pt2,pt3 to within specified tolerance. This is included here // because vtkTriangle doesn't have an equivalently efficient method. @@ -461,7 +473,6 @@ void vtkOBBTree::ComputeOBB( // or -1 if exiting, according to normal of triangle) // The function return value is 1 if an intersection was found. - static inline int vtkOBBTreeLineIntersectsTriangle(const double p1[3], const double p2[3], double pt1[3], double pt2[3], double pt3[3], double tolerance, double point[3], double& t, int& sense) @@ -610,6 +621,7 @@ static inline int vtkOBBTreeLineIntersectsTriangle(const double p1[3], const dou return 0; } +//------------------------------------------------------------------------------ // just check whether a point lies inside or outside the DataSet, // assuming that the data is a closed vtkPolyData surface. int vtkOBBTree::InsideOrOutside(const double point[3]) @@ -674,6 +686,7 @@ int vtkOBBTree::InsideOrOutside(const double point[3]) return 0; } +//------------------------------------------------------------------------------ // Take the passed line segment and intersect it with the OBB cells. // This method assumes that the data set is a vtkPolyData that describes // a closed surface, and the intersection points that are returned in @@ -908,6 +921,7 @@ int vtkOBBTree::IntersectWithLine( return rval; } +//------------------------------------------------------------------------------ // Return intersection point (if any) AND the cell which was intersected by // finite line int vtkOBBTree::IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, @@ -976,6 +990,7 @@ int vtkOBBTree::IntersectWithLine(const double a0[3], const double a1[3], double return 0; } +//------------------------------------------------------------------------------ void vtkOBBNode::DebugPrintTree(int level, double* leaf_vol, int* minCells, int* maxCells) { double xp[3], volume, c[3]; @@ -1034,22 +1049,37 @@ void vtkOBBNode::DebugPrintTree(int level, double* leaf_vol, int* minCells, int* } } -// -// Method to form subdivision of space based on the cells provided and -// subject to the constraints of levels and NumberOfCellsInOctant. -// The result is directly addressable and of uniform subdivision. -// +//------------------------------------------------------------------------------ void vtkOBBTree::BuildLocator() +{ + // don't rebuild if build time is newer than modified and dataset modified time + if (this->Tree && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) + { + return; + } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->Tree && this->UseExistingSearchStructure) + { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; + } + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkOBBTree::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkOBBTree::BuildLocatorInternal() { vtkIdType numPts, numCells, i; vtkIdList* cellList; vtkDebugMacro(<< "Building OBB tree"); - if ((this->Tree != nullptr) && (this->BuildTime > this->MTime) && - (this->BuildTime > this->DataSet->GetMTime())) - { - return; - } numPts = this->DataSet->GetNumberOfPoints(); numCells = this->DataSet->GetNumberOfCells(); @@ -1078,11 +1108,8 @@ void vtkOBBTree::BuildLocator() cellList->InsertId(i, i); } - if (this->Tree) - { - this->DeleteTree(this->Tree); - delete this->Tree; - } + this->FreeSearchStructure(); + this->Tree = new vtkOBBNode; this->Level = 0; this->BuildTree(cellList, this->Tree, 0); @@ -1108,6 +1135,7 @@ void vtkOBBTree::BuildLocator() this->BuildTime.Modified(); } +//------------------------------------------------------------------------------ // NOTE: for better memory usage this recursive method // frees its first argument void vtkOBBTree::BuildTree(vtkIdList* cells, vtkOBBNode* OBBptr, int level) @@ -1275,6 +1303,7 @@ void vtkOBBTree::BuildTree(vtkIdList* cells, vtkOBBNode* OBBptr, int level) cellPts->Delete(); } +//------------------------------------------------------------------------------ // Create polygonal representation for OBB tree at specified level. If // level < 0, then the leaf OBB nodes will be gathered. The aspect ratio (ar) // and line diameter (d) are used to control the building of the @@ -1282,18 +1311,18 @@ void vtkOBBTree::BuildTree(vtkIdList* cells, vtkOBBNode* OBBptr, int level) // dimension of the OBB is collapsed (OBB->plane->line). A "line" OBB will be // represented either as two crossed polygons, or as a line, depending on // the relative diameter of the OBB compared to the diameter (d). - void vtkOBBTree::GenerateRepresentation(int level, vtkPolyData* pd) { - vtkPoints* pts; - vtkCellArray* polys; - + this->BuildLocator(); if (this->Tree == nullptr) { - vtkErrorMacro(<< "No tree to generate representation from"); + vtkErrorMacro(<< "Empty tree, most likely there are no cells in the input data set"); return; } + vtkPoints* pts; + vtkCellArray* polys; + pts = vtkPoints::New(); pts->Allocate(5000); polys = vtkCellArray::New(); @@ -1307,6 +1336,7 @@ void vtkOBBTree::GenerateRepresentation(int level, vtkPolyData* pd) pd->Squeeze(); } +//------------------------------------------------------------------------------ void vtkOBBTree::GeneratePolygons( vtkOBBNode* OBBptr, int level, int repLevel, vtkPoints* pts, vtkCellArray* polys) @@ -1401,6 +1431,7 @@ void vtkOBBTree::GeneratePolygons( } } +//------------------------------------------------------------------------------ int vtkOBBTree::DisjointOBBNodes(vtkOBBNode* nodeA, vtkOBBNode* nodeB, vtkMatrix4x4* XformBtoA) { if (nodeA == nullptr || nodeB == nullptr) @@ -1595,6 +1626,7 @@ int vtkOBBTree::DisjointOBBNodes(vtkOBBNode* nodeA, vtkOBBNode* nodeB, vtkMatrix return (0); } +//------------------------------------------------------------------------------ int vtkOBBTree::TriangleIntersectsNode( vtkOBBNode* nodeA, double p0[3], double p1[3], double p2[3], vtkMatrix4x4* XformBtoA) { @@ -1748,6 +1780,7 @@ int vtkOBBTree::TriangleIntersectsNode( return (1); } +//------------------------------------------------------------------------------ // check if a line intersects the node: the line doesn't have to actually // pass all the way through the node, but at least some portion of the line // must lie within the node. @@ -1792,6 +1825,7 @@ int vtkOBBTree::LineIntersectsNode(vtkOBBNode* pA, const double b0[3], const dou return (1); } +//------------------------------------------------------------------------------ // Intersect this OBBTree with OBBTreeB (as transformed) and // call processing function for each intersecting leaf node pair. // If the processing function returns a negative integer, terminate. @@ -1879,6 +1913,7 @@ int vtkOBBTree::IntersectWithOBBTree(vtkOBBTree* OBBTreeB, vtkMatrix4x4* XformBt return (count); } +//------------------------------------------------------------------------------ void vtkOBBTree::PrintSelf(ostream& os, vtkIndent indent) { this->Superclass::PrintSelf(os, indent); diff --git a/Filters/General/vtkOBBTree.h b/Filters/General/vtkOBBTree.h index 92e30a9fdb96..cb7fb4d877d9 100644 --- a/Filters/General/vtkOBBTree.h +++ b/Filters/General/vtkOBBTree.h @@ -40,12 +40,11 @@ * - MaxLevel (default 12) * - NumberOfCellsPerNode (default 32) * - RetainCellLists (default true) + * - UseExistingSearchStructure (default false) * * vtkOBBTree does NOT utilize the following parameters: * - Automatic * - CacheCellBounds - * - UseExistingSearchStructure - * - LazyEvaluation * * @warning * Since this algorithms works from a list of cells, the OBB tree will only @@ -189,6 +188,7 @@ public: */ void FreeSearchStructure() override; void BuildLocator() override; + void ForceBuildLocator() override; ///@} /** @@ -206,6 +206,8 @@ protected: vtkOBBTree(); ~vtkOBBTree() override; + void BuildLocatorInternal() override; + // Compute an OBB from the list of cells given. This used to be // public but should not have been. A public call has been added // so that the functionality can be accessed. diff --git a/Rendering/Core/Testing/Python/PickerWithLocator.py b/Rendering/Core/Testing/Python/PickerWithLocator.py index bda2ebf89dd3..1f5baefde82b 100755 --- a/Rendering/Core/Testing/Python/PickerWithLocator.py +++ b/Rendering/Core/Testing/Python/PickerWithLocator.py @@ -42,7 +42,6 @@ boneStripper.SetMaximumLength(5) boneLocator = vtk.vtkCellLocator() boneLocator.SetDataSet(boneStripper.GetOutput()) -boneLocator.LazyEvaluationOn() boneMapper = vtk.vtkPolyDataMapper() boneMapper.SetInputConnection(boneStripper.GetOutputPort()) diff --git a/Rendering/Core/vtkCellPicker.h b/Rendering/Core/vtkCellPicker.h index 9674fbcdb14a..ab036563007f 100644 --- a/Rendering/Core/vtkCellPicker.h +++ b/Rendering/Core/vtkCellPicker.h @@ -89,9 +89,7 @@ public: * Add a locator for one of the data sets that will be included in the * scene. You must set up the locator with exactly the same data set * that was input to the mapper of one or more of the actors in the - * scene. As well, you must either build the locator before doing the - * pick, or you must turn on LazyEvaluation in the locator to make it - * build itself on the first pick. Note that if you try to add the + * scene. Note that if you try to add the * same locator to the picker twice, the second addition will be ignored. */ void AddLocator(vtkAbstractCellLocator* locator); -- GitLab From 60a6d09a1704cf34bbe2a6cb3c4f3d170819d8e2 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 2 May 2022 01:47:59 -0400 Subject: [PATCH 0078/1015] CellLocators: CacheCellBounds by default Caching the bounds is really beneficial for repetitive queries, that's why it has become a default option. --- Common/DataModel/vtkAbstractCellLocator.cxx | 2 +- Common/DataModel/vtkCellLocator.h | 2 +- Common/DataModel/vtkCellTreeLocator.h | 2 +- Filters/General/Testing/Python/TestCellLocators.py | 1 - 4 files changed, 3 insertions(+), 4 deletions(-) diff --git a/Common/DataModel/vtkAbstractCellLocator.cxx b/Common/DataModel/vtkAbstractCellLocator.cxx index c2c93d10b6e8..8655bf296801 100644 --- a/Common/DataModel/vtkAbstractCellLocator.cxx +++ b/Common/DataModel/vtkAbstractCellLocator.cxx @@ -31,7 +31,7 @@ //------------------------------------------------------------------------------ vtkAbstractCellLocator::vtkAbstractCellLocator() { - this->CacheCellBounds = 0; + this->CacheCellBounds = 1; this->CellBounds = nullptr; this->MaxLevel = 8; this->Level = 0; diff --git a/Common/DataModel/vtkCellLocator.h b/Common/DataModel/vtkCellLocator.h index 3b481e8ae25a..719f29edcd4b 100644 --- a/Common/DataModel/vtkCellLocator.h +++ b/Common/DataModel/vtkCellLocator.h @@ -31,7 +31,7 @@ * - Level (default 8) * - MaxLevel (default 8) * - NumberOfCellsPerNode (default 25) - * - CacheCellBounds (default false) + * - CacheCellBounds (default true) * - UseExistingSearchStructure (default false) * * vtkCellLocator does NOT utilize the following parameters: diff --git a/Common/DataModel/vtkCellTreeLocator.h b/Common/DataModel/vtkCellTreeLocator.h index 4ccd66170fed..89396e1950c9 100644 --- a/Common/DataModel/vtkCellTreeLocator.h +++ b/Common/DataModel/vtkCellTreeLocator.h @@ -27,7 +27,7 @@ * * vtkCellTreeLocator utilizes the following parent class parameters: * - NumberOfCellsPerNode (default 8) - * - CacheCellBounds (default false) + * - CacheCellBounds (default true) * - UseExistingSearchStructure (default false) * * vtkCellTreeLocator does NOT utilize the following parameters: diff --git a/Filters/General/Testing/Python/TestCellLocators.py b/Filters/General/Testing/Python/TestCellLocators.py index 3861f4d4a4db..9949404dc29b 100755 --- a/Filters/General/Testing/Python/TestCellLocators.py +++ b/Filters/General/Testing/Python/TestCellLocators.py @@ -79,7 +79,6 @@ locator2 = vtk.vtkStaticCellLocator() locator2.SetDataSet(output) locator2.AutomaticOn() locator2.SetNumberOfCellsPerNode(20) -locator2.CacheCellBoundsOn() timer.StartTimer() locator2.BuildLocator() -- GitLab From ac77de43b6f3a0b6eac20e793e5fcddd7bad8e0d Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 2 May 2022 20:18:00 -0400 Subject: [PATCH 0079/1015] vtkCellTreeLocator: Support 64-bit ids --- Common/DataModel/vtkCellTreeLocator.cxx | 72 ++++++++++++------------- Common/DataModel/vtkCellTreeLocator.h | 24 ++++----- 2 files changed, 48 insertions(+), 48 deletions(-) diff --git a/Common/DataModel/vtkCellTreeLocator.cxx b/Common/DataModel/vtkCellTreeLocator.cxx index 8d39affe62bf..9b294458cf5e 100644 --- a/Common/DataModel/vtkCellTreeLocator.cxx +++ b/Common/DataModel/vtkCellTreeLocator.cxx @@ -55,7 +55,7 @@ enum // the bounding planes for all 3 dimensions in a single node. LeftMax and rm defines the bounding // planes. start is the location in the cell tree. e.g. for root node start is zero. size is the // number of the nodes under the tree -inline void vtkCellTreeLocator::vtkCellTreeNode::MakeNode(unsigned int left, unsigned int d, +inline void vtkCellTreeLocator::vtkCellTreeNode::MakeNode(vtkIdType left, vtkIdType d, double b[2]) // b is an array containing left max and right min values { this->Index = (d & 3) | (left << 2); @@ -64,7 +64,7 @@ inline void vtkCellTreeLocator::vtkCellTreeNode::MakeNode(unsigned int left, uns } //------------------------------------------------------------------------------ -inline void vtkCellTreeLocator::vtkCellTreeNode::SetChildren(unsigned int left) +inline void vtkCellTreeLocator::vtkCellTreeNode::SetChildren(vtkIdType left) { this->Index = GetDimension() | (left << 2); // In index 2 LSBs (Least Significant Bits) store the // dimension. MSBs store the position @@ -77,20 +77,20 @@ inline bool vtkCellTreeLocator::vtkCellTreeNode::IsNode() const } //------------------------------------------------------------------------------ -inline unsigned int vtkCellTreeLocator::vtkCellTreeNode::GetLeftChildIndex() const +inline vtkIdType vtkCellTreeLocator::vtkCellTreeNode::GetLeftChildIndex() const { return (this->Index >> 2); } //------------------------------------------------------------------------------ -inline unsigned int vtkCellTreeLocator::vtkCellTreeNode::GetRightChildIndex() const +inline vtkIdType vtkCellTreeLocator::vtkCellTreeNode::GetRightChildIndex() const { return (this->Index >> 2) + 1; // Right child node is adjacent to the Left child node in the data structure } //------------------------------------------------------------------------------ -inline unsigned int vtkCellTreeLocator::vtkCellTreeNode::GetDimension() const +inline vtkIdType vtkCellTreeLocator::vtkCellTreeNode::GetDimension() const { return this->Index & 3; } @@ -108,7 +108,7 @@ inline const double& vtkCellTreeLocator::vtkCellTreeNode::GetRightMinValue() con } //------------------------------------------------------------------------------ -inline void vtkCellTreeLocator::vtkCellTreeNode::MakeLeaf(unsigned int start, unsigned int size) +inline void vtkCellTreeLocator::vtkCellTreeNode::MakeLeaf(vtkIdType start, vtkIdType size) { this->Index = 3; this->Sz = size; @@ -122,13 +122,13 @@ bool vtkCellTreeLocator::vtkCellTreeNode::IsLeaf() const } //------------------------------------------------------------------------------ -unsigned int vtkCellTreeLocator::vtkCellTreeNode::Start() const +vtkIdType vtkCellTreeLocator::vtkCellTreeNode::Start() const { return this->St; } //------------------------------------------------------------------------------ -unsigned int vtkCellTreeLocator::vtkCellTreeNode::Size() const +vtkIdType vtkCellTreeLocator::vtkCellTreeNode::Size() const { return this->Sz; } @@ -140,8 +140,8 @@ class vtkCellPointTraversal { private: const vtkCellTreeLocator::vtkCellTree& m_ct; - unsigned int m_stack[CELLTREE_MAX_DEPTH]; - unsigned int* m_sp; // stack pointer + vtkIdType m_stack[CELLTREE_MAX_DEPTH]; + vtkIdType* m_sp; // stack pointer const double* m_pos; // 3-D coordinates of the points vtkCellPointTraversal(const vtkCellPointTraversal&) = delete; void operator=(vtkCellPointTraversal&) = delete; @@ -179,7 +179,7 @@ public: } const double p = m_pos[n->GetDimension()]; - const unsigned int left = n->GetLeftChildIndex(); + const vtkIdType left = n->GetLeftChildIndex(); bool l = p <= n->GetLeftMaxValue(); // Check if the points is within the left sub tree bool r = p >= n->GetRightMinValue(); // Check if the point is within the right sub tree @@ -221,7 +221,7 @@ private: { double Min; double Max; - unsigned int Cnt; + vtkIdType Cnt; Bucket() { @@ -250,13 +250,13 @@ private: { double Min[3]; double Max[3]; - unsigned int Ind; + vtkIdType Ind; }; struct CenterOrder { - unsigned int d; - CenterOrder(unsigned int _d) + vtkIdType d; + CenterOrder(vtkIdType _d) : d(_d) { } @@ -269,9 +269,9 @@ private: struct LeftPredicate { - unsigned int d; + vtkIdType d; double p; - LeftPredicate(unsigned int _d, double _p) + LeftPredicate(vtkIdType _d, double _p) : d(_d) , p(2.0f * _p) { @@ -289,7 +289,7 @@ private: return; } - for (unsigned int d = 0; d < 3; ++d) + for (vtkIdType d = 0; d < 3; ++d) { min[d] = begin->Min[d]; max[d] = begin->Max[d]; @@ -297,7 +297,7 @@ private: while (++begin != end) { - for (unsigned int d = 0; d < 3; ++d) + for (vtkIdType d = 0; d < 3; ++d) { if (begin->Min[d] < min[d]) min[d] = begin->Min[d]; @@ -309,10 +309,10 @@ private: // ------------------------------------------------------------------------- - void Split(unsigned int index, double min[3], double max[3]) + void Split(vtkIdType index, double min[3], double max[3]) { - unsigned int start = this->m_nodes[index].Start(); - unsigned int size = this->m_nodes[index].Size(); + vtkIdType start = this->m_nodes[index].Start(); + vtkIdType size = this->m_nodes[index].Size(); if (size < this->m_leafsize) { @@ -332,7 +332,7 @@ private: for (const PerCell* pc = begin; pc != end; ++pc) { - for (unsigned int d = 0; d < 3; ++d) + for (vtkIdType d = 0; d < 3; ++d) { double cen = (pc->Min[d] + pc->Max[d]) / 2.0f; int ind = (int)((cen - min[d]) * iext[d]); @@ -352,19 +352,19 @@ private: } double cost = std::numeric_limits::max(); - double plane = VTK_DOUBLE_MIN; // bad value in case it doesn't get setx - unsigned int dim = VTK_INT_MAX; // bad value in case it doesn't get set + double plane = VTK_DOUBLE_MIN; // bad value in case it doesn't get setx + vtkIdType dim = VTK_INT_MAX; // bad value in case it doesn't get set - for (unsigned int d = 0; d < 3; ++d) + for (vtkIdType d = 0; d < 3; ++d) { - unsigned int sum = 0; + vtkIdType sum = 0; - for (unsigned int n = 0; n < (unsigned int)nbuckets - 1; ++n) + for (vtkIdType n = 0; n < (vtkIdType)nbuckets - 1; ++n) { double lmax = -std::numeric_limits::max(); double rmin = std::numeric_limits::max(); - for (unsigned int m = 0; m <= n; ++m) + for (vtkIdType m = 0; m <= n; ++m) { if (b[d][m].Max > lmax) { @@ -372,7 +372,7 @@ private: } } - for (unsigned int m = n + 1; m < (unsigned int)nbuckets; ++m) + for (vtkIdType m = n + 1; m < (vtkIdType)nbuckets; ++m) { if (b[d][m].Min < rmin) { @@ -516,8 +516,8 @@ public: this->m_pc.clear(); } - unsigned int m_buckets; - unsigned int m_leafsize; + vtkIdType m_buckets; + vtkIdType m_leafsize; std::vector m_pc; std::vector m_nodes; }; @@ -608,8 +608,8 @@ vtkIdType vtkCellTreeLocator::FindCell( vtkCellPointTraversal pt(*(this->Tree), pos); while (const vtkCellTreeNode* n = pt.Next()) { - const unsigned int* begin = &(this->Tree->Leaves[n->Start()]); - const unsigned int* end = begin + n->Size(); + const vtkIdType* begin = &(this->Tree->Leaves[n->Start()]); + const vtkIdType* end = begin + n->Size(); for (; begin != end; ++begin) { @@ -759,7 +759,7 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] } // Ok, so we're a leaf node, first check the BBox against the ray // then test the candidates in our sorted ray direction order - for (unsigned int i = 0; i < node->Size(); i++) + for (vtkIdType i = 0; i < node->Size(); i++) { cId = this->Tree->Leaves[node->Start() + i]; if (!cellHasBeenVisited[cId]) @@ -922,7 +922,7 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] } // Ok, so we're a leaf node, first check the BBox against the ray // then test the candidates in our sorted ray direction order - for (unsigned int i = 0; i < node->Size(); i++) + for (vtkIdType i = 0; i < node->Size(); i++) { cId = this->Tree->Leaves[node->Start() + i]; if (!cellHasBeenVisited[cId]) diff --git a/Common/DataModel/vtkCellTreeLocator.h b/Common/DataModel/vtkCellTreeLocator.h index 89396e1950c9..bdf228c28d73 100644 --- a/Common/DataModel/vtkCellTreeLocator.h +++ b/Common/DataModel/vtkCellTreeLocator.h @@ -157,7 +157,7 @@ public: { public: std::vector Nodes; - std::vector Leaves; + std::vector Leaves; friend class vtkCellPointTraversal; friend class vtkCellTreeNode; friend class vtkCellTreeBuilder; @@ -180,29 +180,29 @@ public: { public: protected: - unsigned int Index; + vtkIdType Index; double LeftMax; // left max value double RightMin; // right min value - unsigned int Sz; // size - unsigned int St; // start + vtkIdType Sz; // size + vtkIdType St; // start friend class vtkCellPointTraversal; friend class vtkCellTreeBuilder; public: - void MakeNode(unsigned int left, unsigned int d, double b[2]); - void SetChildren(unsigned int left); + void MakeNode(vtkIdType left, vtkIdType d, double b[2]); + void SetChildren(vtkIdType left); bool IsNode() const; - unsigned int GetLeftChildIndex() const; - unsigned int GetRightChildIndex() const; - unsigned int GetDimension() const; + vtkIdType GetLeftChildIndex() const; + vtkIdType GetRightChildIndex() const; + vtkIdType GetDimension() const; const double& GetLeftMaxValue() const; const double& GetRightMinValue() const; - void MakeLeaf(unsigned int start, unsigned int size); + void MakeLeaf(vtkIdType start, vtkIdType size); bool IsLeaf() const; - unsigned int Start() const; - unsigned int Size() const; + vtkIdType Start() const; + vtkIdType Size() const; }; protected: -- GitLab From 24c16fc665629fe647207d487efa13cdb224149f Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 2 May 2022 01:50:16 -0400 Subject: [PATCH 0080/1015] Add changelog --- .../release/dev/improve-cell-locators.md | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 Documentation/release/dev/improve-cell-locators.md diff --git a/Documentation/release/dev/improve-cell-locators.md b/Documentation/release/dev/improve-cell-locators.md new file mode 100644 index 000000000000..48716ae42812 --- /dev/null +++ b/Documentation/release/dev/improve-cell-locators.md @@ -0,0 +1,35 @@ +## Improve Cell Locators + +vtkCellLocator, vtkStaticCellLocator, vtkCellTreeLocator, vtkModifiedBSPTree, Cell locators have several improvements as +listed below: + +1. Caching cell bounds has been multithreaded +2. InsideCellBounds has been modified to check if bounds have been cached for better performance +3. vtkCellTreeLocator's FindCell has been improved by inserting an InsideCellBounds check before EvaluatingPosition +4. vtkCellTreeLocator has been moved to Common/DataModel +5. vtkCellTreeLocator now supports 64-bit ids +7. vtModifiedBSPTree's BuildLocatorInternal has been partially multithreaded +8. vtkCellLocator is now fully thread safe +9. vtkStaticCellLocator now does not utilize Tolerance (like all the other cell locators). The tolerance was added in + the past to ameliorate issues inside IntersectWithLine/FindCellsAlongLine by padding the bin bounds. These issues + have now been fixed by using a double tolerance approach, hence the Tolerance is no longer needed. +10. Because vtkStaticCellLocator does not utilize Tolerance, UseDiagonalLengthTolerance has been deprecated. +11. vtkCellTreeLocator's and vtkModifiedBSPTree's IntersectWithLine are now thread-safe. +12. All cell locators now have a new IntersectWithLine function which returns the intersected cells and their + intersection points sorted by the parametric t. This new function is a more general case of FindCellsAlongLine, + therefore, all cell locators now also support FindCellsAlongLine. +13. Both IntersectWithLine and FindCellsAlongLine now follow the same approach across all locators. Additionally, the + tolerance parameter is now also used to check intersection with the cell bounds, to avoid false negatives. +14. All Cell/Points Locators now have UseExistingSearchStructure. This parameter allows the locator to NOT + be built again. This is useful when you have a dataset that either changes because the FieldData ( + PointData/CellData) changed or the actual dataset object changed, but it's actually the same geometry (useful when a + dataset has timesteps). When this flag is on you need to use ForceBuildLocator() to rebuild the locator, if your + dataset changes. +15. LazyEvaluation flag has been deprecated for all cell locators, because it could lead to thread-safety issues. Due + to this change, the function BuildLocatorIfNeeded has been deprecated across cell locators that they were defining + it. +16. All Cell Locators now cache their bounds by default (it's still an option) because it's highly beneficial + performance-wise. vtkModifiedBSPTree has been modified to cache the cell bounds optionally. +17. All Cell Locators now have clear documentation about which vtkLocator/vtkAbstractCellLocator parameters they are + using, and vtkAbstractCellLocator now clearly states which functions are thread-safe or not. The non-thread-safe + ones, use internal GenericCell or weights. -- GitLab From 952580e69f2d2fc693797c7cbed041e9958a361e Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Tue, 3 May 2022 13:55:01 +0200 Subject: [PATCH 0081/1015] fix a htg warning --- Common/DataModel/vtkHyperTreeGrid.cxx | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/Common/DataModel/vtkHyperTreeGrid.cxx b/Common/DataModel/vtkHyperTreeGrid.cxx index 55a6526b8224..6191782865a6 100644 --- a/Common/DataModel/vtkHyperTreeGrid.cxx +++ b/Common/DataModel/vtkHyperTreeGrid.cxx @@ -433,9 +433,12 @@ vtkHyperTreeGrid* vtkHyperTreeGrid::GetData(vtkInformationVector* v, int i) //------------------------------------------------------------------------------ void vtkHyperTreeGrid::CopyEmptyStructure(vtkDataObject* ds) { - assert("pre: ds_exists" && ds != nullptr); vtkHyperTreeGrid* htg = vtkHyperTreeGrid::SafeDownCast(ds); - assert("pre: same_type" && htg != nullptr); + if (!htg) + { + vtkErrorMacro("Unable to copy empty structure of a non-HTG or empty data object in an HTG"); + return; + } // RectilinearGrid memcpy(this->Dimensions, htg->GetDimensions(), 3 * sizeof(unsigned int)); @@ -472,9 +475,12 @@ void vtkHyperTreeGrid::CopyEmptyStructure(vtkDataObject* ds) //------------------------------------------------------------------------------ void vtkHyperTreeGrid::CopyStructure(vtkDataObject* ds) { - assert("pre: ds_exists" && ds != nullptr); vtkHyperTreeGrid* htg = vtkHyperTreeGrid::SafeDownCast(ds); - assert("pre: same_type" && htg != nullptr); + if (!htg) + { + vtkErrorMacro("Unable to copy structure of a non-HTG or empty data object in an HTG"); + return; + } // RectilinearGrid memcpy(this->Dimensions, htg->GetDimensions(), 3 * sizeof(unsigned int)); -- GitLab From 48d7d6cd8bb4027a6b5f6f8e47678082be66e2e8 Mon Sep 17 00:00:00 2001 From: Sean McBride Date: Wed, 27 Apr 2022 17:49:01 -0400 Subject: [PATCH 0082/1015] Fixed several warnings, mostly unused things, and one signed/unsigned compare --- Filters/Core/vtkSurfaceNets2D.cxx | 1 - Filters/Statistics/vtkLengthDistribution.cxx | 2 +- IO/AMR/vtkAMReXGridReader.cxx | 2 +- IO/Infovis/vtkDelimitedTextReader.cxx | 1 - 4 files changed, 2 insertions(+), 4 deletions(-) diff --git a/Filters/Core/vtkSurfaceNets2D.cxx b/Filters/Core/vtkSurfaceNets2D.cxx index 65138b4aae3f..a26a1648c4dd 100644 --- a/Filters/Core/vtkSurfaceNets2D.cxx +++ b/Filters/Core/vtkSurfaceNets2D.cxx @@ -351,7 +351,6 @@ struct SurfaceNets // The point on which the stencil operates vtkIdType pId = pIds[1]; - using ValueType = typename CellStateT::ValueType; auto* offsets = state.GetOffsets(); auto* conn = state.GetConnectivity(); diff --git a/Filters/Statistics/vtkLengthDistribution.cxx b/Filters/Statistics/vtkLengthDistribution.cxx index 6c29a956f3e3..a8abc17e5acc 100644 --- a/Filters/Statistics/vtkLengthDistribution.cxx +++ b/Filters/Statistics/vtkLengthDistribution.cxx @@ -96,7 +96,7 @@ int vtkLengthDistribution::RequestData( vtkReservoirSampler sampler; std::vector ids = sampler(numSamples, dataIn->GetNumberOfCells()); vtkSMPTools::For(0, static_cast(ids.size()), - [&dataIn, &table, &lengths, &sampler, &ids](vtkIdType begin, vtkIdType end) { + [&dataIn, &lengths, &sampler, &ids](vtkIdType begin, vtkIdType end) { vtkNew points; std::array endpoints; for (vtkIdType ii = begin; ii < end; ++ii) diff --git a/IO/AMR/vtkAMReXGridReader.cxx b/IO/AMR/vtkAMReXGridReader.cxx index ce99525a742e..8ba209cc05c6 100644 --- a/IO/AMR/vtkAMReXGridReader.cxx +++ b/IO/AMR/vtkAMReXGridReader.cxx @@ -357,7 +357,7 @@ void vtkAMReXGridReader::SetUpDataArraySelections() } // add extra multifab variables - for (int fab = 0; fab < this->Internal->Header->extraMultiFabVariables.size(); ++fab) + for (size_t fab = 0; fab < this->Internal->Header->extraMultiFabVariables.size(); ++fab) { const int fabTopology = this->Internal->Header->extraMultiFabVarTopology[fab]; for (const auto& variable : this->Internal->Header->extraMultiFabParsedVarNames) diff --git a/IO/Infovis/vtkDelimitedTextReader.cxx b/IO/Infovis/vtkDelimitedTextReader.cxx index 669795818f56..4c7d36ba7995 100644 --- a/IO/Infovis/vtkDelimitedTextReader.cxx +++ b/IO/Infovis/vtkDelimitedTextReader.cxx @@ -296,7 +296,6 @@ private: std::set Whitespace; std::set EscapeDelimiter; bool HaveHeaders; - bool UnicodeArrayOutput; bool WhiteSpaceOnlyString; vtkTable* OutputTable; vtkIdType CurrentRecordIndex; -- GitLab From 57abb432d6752a813d7087474df3319160b8f868 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Wed, 4 May 2022 00:01:31 -0400 Subject: [PATCH 0083/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 3d51d235c780..0482b7c06b6d 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220503) +set(VTK_BUILD_VERSION 20220504) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From ba2f5ca289a87f2d0b4ea846db75ddfecaa64068 Mon Sep 17 00:00:00 2001 From: Nicolas Vuaille Date: Tue, 3 May 2022 14:19:03 +0200 Subject: [PATCH 0084/1015] Enable PYI test only if PYI files are built --- Wrapping/Python/Testing/Python/CMakeLists.txt | 15 ++++++++++----- 1 file changed, 10 insertions(+), 5 deletions(-) diff --git a/Wrapping/Python/Testing/Python/CMakeLists.txt b/Wrapping/Python/Testing/Python/CMakeLists.txt index 931448056e20..8f9d1e0504dc 100644 --- a/Wrapping/Python/Testing/Python/CMakeLists.txt +++ b/Wrapping/Python/Testing/Python/CMakeLists.txt @@ -7,14 +7,19 @@ foreach (_vtk_python_module IN LISTS vtk_python_wrapped_modules) list(APPEND _vtk_python_wrapped_module_names "${_vtk_python_library_name}") endforeach () -set(TestCompilePYI_ARGS - "${CMAKE_BINARY_DIR}/${VTK_PYTHON_SITE_PACKAGES_SUFFIX}/vtkmodules" - ${_vtk_python_wrapped_module_names}) +set(python_tests + TestErrorObserver.py) + +if (TARGET vtkpythonmodules_pyi) + set(TestCompilePYI_ARGS + "${CMAKE_BINARY_DIR}/${VTK_PYTHON_SITE_PACKAGES_SUFFIX}/vtkmodules" + ${_vtk_python_wrapped_module_names}) + list(APPEND python_tests TestCompilePYI.py) +endif() vtk_add_test_python( NO_DATA NO_OUTPUT NO_VALID - TestErrorObserver.py - TestCompilePYI.py + ${python_tests} ) -- GitLab From add23aa95f1a4ad4f98bae6a54a20f103b504920 Mon Sep 17 00:00:00 2001 From: Timothee Chabat Date: Wed, 4 May 2022 09:40:05 +0200 Subject: [PATCH 0085/1015] Add a default sample rate property to the FFT Table filter Also cleanup some warnings --- Filters/General/Testing/Cxx/TestTableFFT.cxx | 65 +++++++---- Filters/General/vtkTableFFT.cxx | 109 +++++++++---------- Filters/General/vtkTableFFT.h | 27 ++++- 3 files changed, 117 insertions(+), 84 deletions(-) diff --git a/Filters/General/Testing/Cxx/TestTableFFT.cxx b/Filters/General/Testing/Cxx/TestTableFFT.cxx index 82fcd0a628b8..e61089ca6262 100644 --- a/Filters/General/Testing/Cxx/TestTableFFT.cxx +++ b/Filters/General/Testing/Cxx/TestTableFFT.cxx @@ -57,6 +57,8 @@ constexpr std::array e_col2 = { { Length, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0 } }; constexpr std::array e_freq = { { 0.0, 0.125, 0.25, 0.375, -0.5, -0.375, -0.25, -0.125 } }; +constexpr std::array e_freq2 = { { 0.0, 1.25, 2.5, 3.75, -5.0, -3.75, -2.5, + -1.25 } }; // ---------------------------------------------------------------------------- void InitializeTableInput(vtkTable* table) @@ -105,9 +107,39 @@ void InitializeTableReference(vtkTable* table) columnFreq->SetArray(const_cast(e_freq.data()), Length, /*save*/ 1); columnFreq->SetName("Frequency"); + vtkNew columnFreq2; + columnFreq2->SetNumberOfTuples(Length); + columnFreq2->SetNumberOfComponents(1); + columnFreq2->SetArray(const_cast(e_freq2.data()), Length, /*save*/ 1); + columnFreq2->SetName("Frequency2"); + table->AddColumn(column1); table->AddColumn(column2); table->AddColumn(columnFreq); + table->AddColumn(columnFreq2); +} + +// ---------------------------------------------------------------------------- +bool FuzzyCompare(vtkDoubleArray* inArray, vtkDoubleArray* expected, double epsilon) +{ + bool status = true; + + for (vtkIdType i = 0; i < inArray->GetNumberOfValues(); ++i) + { + if (!vtkMathUtilities::NearlyEqual(inArray->GetValue(i), expected->GetValue(i), epsilon)) + { + status = false; + + std::cerr << "[TestTableFFT] FAILURE for column <" << inArray->GetName() << ">" << std::endl; + std::cerr << "Expected : "; + PrintArray(expected); + std::cerr << "But got : "; + PrintArray(inArray); + break; + } + } + + return status; } // ---------------------------------------------------------------------------- @@ -120,29 +152,12 @@ bool FuzzyCompare(vtkTable* in, vtkTable* expected, double epsilon) vtkDoubleArray* inArray = vtkDoubleArray::SafeDownCast(in->GetColumn(col)); vtkDoubleArray* expArray = vtkDoubleArray::SafeDownCast(expected->GetColumn(col)); - for (vtkIdType i = 0; i < inArray->GetNumberOfValues(); ++i) - { - if (!vtkMathUtilities::NearlyEqual(inArray->GetValue(i), expArray->GetValue(i), epsilon)) - { - status = false; - - std::cerr << "[TestTableFFT] FAILURE for column <" << inArray->GetName() << ">" - << std::endl; - std::cerr << "Expected : "; - PrintArray(expArray); - std::cerr << "But got : "; - PrintArray(inArray); - break; - } - } + status = status && FuzzyCompare(inArray, expArray, epsilon); } - if (status) - { - std::cerr << "[TestTableFFT] We're all clear" << std::endl; - } return status; } + } // ---------------------------------------------------------------------------- @@ -159,18 +174,26 @@ int TestTableFFT(int vtkNotUsed(argc), char* vtkNotUsed(argv)[]) fftFilter->Update(); status += static_cast(!details::FuzzyCompare(fftFilter->GetOutput(), empty, 1.0e-6)); - // Initialize data + // Test actual data vtkNew input; details::InitializeTableInput(input); vtkNew reference; details::InitializeTableReference(reference); - // Test actual data fftFilter->SetInputData(input); fftFilter->CreateFrequencyColumnOn(); fftFilter->SetWindowingFunction(vtkTableFFT::RECTANGULAR); fftFilter->Update(); status += static_cast(!details::FuzzyCompare(fftFilter->GetOutput(), reference, 1.0e-6)); + // Test with a different sampling rate + input->RemoveColumnByName("Time"); + fftFilter->SetInputData(input); + fftFilter->SetDefaultSampleRate(10); + fftFilter->Update(); + auto* result = vtkDoubleArray::SafeDownCast(fftFilter->GetOutput()->GetColumnByName("Frequency")); + auto* expected = vtkDoubleArray::SafeDownCast(reference->GetColumnByName("Frequency2")); + status += static_cast(!details::FuzzyCompare(result, expected, 1.0e-6)); + return status; } diff --git a/Filters/General/vtkTableFFT.cxx b/Filters/General/vtkTableFFT.cxx index b4369227ada2..2f8f7f763e00 100644 --- a/Filters/General/vtkTableFFT.cxx +++ b/Filters/General/vtkTableFFT.cxx @@ -33,8 +33,8 @@ #include "vtkTable.h" #include "vtkTimeStamp.h" +#include #include -#include #include #include #include @@ -50,7 +50,7 @@ typename std::iterator_traits::value_type WindowEnergy(InputIt begin, I using T = typename std::iterator_traits::value_type; constexpr T zero(0); return std::inner_product(begin, end, begin, zero, std::plus(), std::multiplies()) / - std::distance(begin, end); + static_cast(std::distance(begin, end)); } // Easy access to the right windowing function using vtkTableFFT enumeration. @@ -79,7 +79,7 @@ struct vtkTableFFT::vtkInternal bool Average = false; - void UpdateWindow(int window, int size) + void UpdateWindow(int window, std::size_t size) { this->Window.resize(size); @@ -102,10 +102,7 @@ vtkTableFFT::vtkTableFFT() } //------------------------------------------------------------------------------ -vtkTableFFT::~vtkTableFFT() -{ - delete this->Internals; -} +vtkTableFFT::~vtkTableFFT() = default; //------------------------------------------------------------------------------ int vtkTableFFT::RequestData(vtkInformation* vtkNotUsed(request), @@ -121,63 +118,62 @@ int vtkTableFFT::RequestData(vtkInformation* vtkNotUsed(request), } if (input->GetNumberOfRows() == 0) { - // Input is empty, nothing to do return 1; } + // Initialize internal state such as output size, sampling frequency, etc this->Initialize(input); + // Process every column of the input vtkIdType numColumns = input->GetNumberOfColumns(); for (vtkIdType col = 0; col < numColumns; col++) { - vtkDataArray* array = vtkArrayDownCast(input->GetColumn(col)); - if (!array || array->GetNumberOfComponents() != 1) + vtkAbstractArray* array = input->GetColumn(col); + const char* arrayName = array->GetName(); + vtkDataArray* dataArray = vtkDataArray::SafeDownCast(array); + + // If array is the time array, skip + if (vtksys::SystemTools::Strucmp(arrayName, "time") == 0) { continue; } - const char* name = array->GetName(); - if (name) + // else if we can and should process the data array for the FFT, do it + else if (dataArray && !vtksys::SystemTools::StringStartsWith(arrayName, "vtk") && + dataArray->GetNumberOfComponents() == 1 && !array->IsA("vtkIdTypeArray")) + { + vtkSmartPointer fft = this->DoFFT(dataArray); + auto namefft = std::string("FFT_").append(arrayName); + fft->SetName(namefft.c_str()); + output->AddColumn(fft); + } + // else pass the array to the output + else { - if (vtksys::SystemTools::Strucmp(name, "time") == 0) + if (this->OptimizeForRealInput) { - continue; + vtkSmartPointer half; + half.TakeReference(array->NewInstance()); + half->DeepCopy(array); + half->SetNumberOfTuples(this->Internals->OutputSize); + half->Squeeze(); + output->AddColumn(half); } - if (strcmp(name, "vtkValidPointMask") == 0) + else { - if (this->OptimizeForRealInput) - { - vtkSmartPointer half; - half.TakeReference(array->NewInstance()); - half->DeepCopy(array); - half->SetNumberOfTuples(this->Internals->OutputSize); - half->Squeeze(); - output->AddColumn(half); - } - else - { - output->AddColumn(array); - } - continue; + output->AddColumn(array); } } - if (array->IsA("vtkIdTypeArray")) - { - continue; - } - - vtkSmartPointer fft = this->DoFFT(array); - auto namefft = std::string("FFT_").append(name); - fft->SetName(namefft.c_str()); - output->AddColumn(fft); } + // Create the frequency column if needed if (this->CreateFrequencyColumn) { - vtkIdType size = this->Internals->Window.size(); + std::size_t size = this->Internals->Window.size(); double spacing = 1.0 / this->Internals->SampleRate; - std::vector stdFreq = - this->OptimizeForRealInput ? vtkFFT::RFftFreq(size, spacing) : vtkFFT::FftFreq(size, spacing); + std::vector stdFreq = this->OptimizeForRealInput + ? vtkFFT::RFftFreq(static_cast(size), spacing) + : vtkFFT::FftFreq(static_cast(size), spacing); vtkNew frequencies; frequencies->SetName("Frequency"); @@ -196,7 +192,7 @@ int vtkTableFFT::RequestData(vtkInformation* vtkNotUsed(request), //------------------------------------------------------------------------------ void vtkTableFFT::Initialize(vtkTable* input) { - // Get temporal information + // Find time array and compute sample rate std::size_t nTimestep = input->GetNumberOfRows(); vtkDataArray* timeArray = nullptr; vtkIdType numColumns = input->GetNumberOfColumns(); @@ -208,28 +204,22 @@ void vtkTableFFT::Initialize(vtkTable* input) break; } } - double deltaT = 0.0; if (timeArray && timeArray->GetNumberOfTuples() > 1) { - deltaT = timeArray->GetTuple1(1) - timeArray->GetTuple1(0); + double deltaT = timeArray->GetTuple1(1) - timeArray->GetTuple1(0); + this->Internals->SampleRate = 1.0 / deltaT; } - - if (deltaT == 0.0) + else { - if (this->Normalize || this->CreateFrequencyColumn) - { - vtkWarningMacro("'Time' information not found, we will assume a 10'000 Hz sampling rate"); - } - deltaT = 1.0e-4; + this->Internals->SampleRate = this->DefaultSampleRate; } - this->Internals->SampleRate = 1.0 / deltaT; - // Generate windowing function + // Check if we can average and compute the size of the windowing function std::size_t actualSize = nTimestep; this->Internals->Average = this->AverageFft; if (this->AverageFft) { - actualSize = vtkMath::NearestPowerOfTwo(this->BlockSize); + actualSize = vtkMath::NearestPowerOfTwo(static_cast(this->BlockSize)); if (actualSize > (nTimestep - this->NumberOfBlock)) { vtkWarningMacro( @@ -239,11 +229,13 @@ void vtkTableFFT::Initialize(vtkTable* input) actualSize = nTimestep; } } + + // Generate windowing function // We're caching the windowing function for more efficiency when applying this filter // on different tables multiple times if (this->Internals->WindowLastUpdated < this->Internals->WindowTimeStamp.GetMTime()) { - this->Internals->UpdateWindow(this->WindowingFunction, static_cast(actualSize)); + this->Internals->UpdateWindow(this->WindowingFunction, actualSize); this->Internals->WindowLastUpdated = this->Internals->WindowTimeStamp.GetMTime(); } @@ -353,11 +345,8 @@ void vtkTableFFT::SetBlockSize(int _arg) void vtkTableFFT::SetWindowingFunction(int _arg) { vtkDebugMacro(<< this->GetClassName() << " (" << this << "): setting " - << "WindowingFunction" - " to " - << _arg); - int clamped = - (_arg < 0 ? 0 : (_arg >= MAX_WINDOWING_FUNCTION ? (MAX_WINDOWING_FUNCTION - 1) : _arg)); + << "WindowingFunction to " << _arg); + int clamped = std::min(std::max(_arg, 0), static_cast(MAX_WINDOWING_FUNCTION)); if (this->WindowingFunction != clamped) { this->WindowingFunction = clamped; diff --git a/Filters/General/vtkTableFFT.h b/Filters/General/vtkTableFFT.h index 838ae1c88c2e..72dbc3144dd5 100644 --- a/Filters/General/vtkTableFFT.h +++ b/Filters/General/vtkTableFFT.h @@ -27,6 +27,13 @@ * vtkTableFFT performs the Fast Fourier Transform on the columns of a table. * It can perform the FFT per block in order to resample the input and have a * smaller output, and also offer a interface for windowing the input signal. + * + * The filter will look for a "Time" array (case insensitive) to determine the + * sampling frequency. "Time" array is considered to have the same frequency + * all along. If no "Time" array is found then the filter use the default frequency + * value. + * + * This filter will not apply the FFT on any arrays which names begin with 'vtk'. */ #ifndef vtkTableFFT_h @@ -36,6 +43,8 @@ #include "vtkSmartPointer.h" // For internal method. #include "vtkTableAlgorithm.h" +#include // For unique_ptr + class VTKFILTERSGENERAL_EXPORT vtkTableFFT : public vtkTableAlgorithm { public: @@ -101,6 +110,17 @@ public: vtkBooleanMacro(CreateFrequencyColumn, bool); //@} + //@{ + /** + * If the "Time" column is not found then this value will be used. + * Expressed in Hz. + * + * Default is 10000 (Hz) + */ + vtkGetMacro(DefaultSampleRate, double); + vtkSetMacro(DefaultSampleRate, double); + //@} + //@{ /** * Only used if @c AverageFft is true @@ -112,7 +132,7 @@ public: * This parameter is ignored if @c BlockSize is superior * to the number of samples of the input array. * - * Default is 2. + * Default is 2 */ vtkGetMacro(NumberOfBlock, int); vtkSetMacro(NumberOfBlock, int); @@ -137,7 +157,7 @@ public: * If @c AverageFft is true the windowing function will be * applied per block and not on the whole input * - * Default is RECTANGULAR (does nothing). + * Default is RECTANGULAR (does nothing) */ vtkGetMacro(WindowingFunction, int); virtual void SetWindowingFunction(int); @@ -173,9 +193,10 @@ private: int NumberOfBlock = 2; vtkIdType BlockSize = 1024; int WindowingFunction = RECTANGULAR; + double DefaultSampleRate = 1e4; struct vtkInternal; - vtkInternal* Internals; + std::unique_ptr Internals; }; #endif // vtkTableFFT_h -- GitLab From 6015ab28101e4154f6cb6eaeaeffae354cdaaacc Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Fri, 15 Apr 2022 16:24:44 +0200 Subject: [PATCH 0086/1015] Change specular components in volume rendering In vtkVolumeShaderComposer, used in vtkOpenGLGPUVolumeRayCastMapper, change the computeLighting codes to have Phong's lighting Also fixes a bug when using lightingComplexity=1 (ie 1 light which is a headlight with intensity = 1.0) --- .../VolumeOpenGL2/vtkVolumeShaderComposer.h | 100 ++++++++++-------- 1 file changed, 54 insertions(+), 46 deletions(-) diff --git a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h index 470d41acafd0..07751855707c 100644 --- a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h +++ b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h @@ -840,24 +840,30 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n {\ \n normal = vec3(0.0, 0.0, 0.0);\ \n }\ - \n float nDotL = dot(normal, g_ldir[0]);\ - \n float nDotH = dot(normal, g_h[0]);\ + \n // XXX: normal is oriented inside the volume, so we take -g_ldir/-g_vdir \ + \n /* XXX: so lightingComplexity = 1 means 'only 1 light which is a headlight with intensity = 1.0'\ + \n so two things :\ + \n 1- that's very specific \ + \n 2- I think it implies g_ldir=g_vdir=g_h in every case ? ... maybe ? idk */\ + \n float nDotL = dot(normal, -g_ldir[0]);\ + \n vec3 r = normalize(2.0 * nDotL * normal + g_ldir[0]);\ + \n float vDotR = dot(r, -g_vdir[0]);\ \n if (nDotL < 0.0 && in_twoSidedLighting)\ \n {\ \n nDotL = -nDotL;\ \n }\ - \n if (nDotH < 0.0 && in_twoSidedLighting)\ + \n if (vDotR < 0.0 && in_twoSidedLighting)\ \n {\ - \n nDotH = -nDotH;\ + \n vDotR = -vDotR;\ \n }\ \n if (nDotL > 0.0)\ \n {\ - \n diffuse = nDotL * in_diffuse[component] *\ + \n diffuse = nDotL * in_diffuse[component] *\ \n in_lightDiffuseColor[0] * color.rgb;\ - \n }\ - \n specular = pow(nDotH, in_shininess[component]) *\ + \n specular = pow(vDotR, in_shininess[component]) *\ \n in_specular[component] *\ \n in_lightSpecularColor[0];\ + \n }\ \n // For the headlight, ignore the light's ambient color\ \n // for now as it is causing the old mapper tests to fail\ \n finalColor.xyz = in_ambient[component] * color.rgb +\ @@ -868,12 +874,12 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa { shaderStr += std::string("\ \n g_fragWorldPos = in_modelViewMatrix * in_volumeMatrix[0] *\ - \n in_textureDatasetMatrix[0] * vec4(-g_dataPos, 1.0);\ + \n in_textureDatasetMatrix[0] * vec4(g_dataPos, 1.0);\ \n if (g_fragWorldPos.w != 0.0)\ \n {\ \n g_fragWorldPos /= g_fragWorldPos.w;\ \n }\ - \n vec3 vdir = normalize(g_fragWorldPos.xyz);\ + \n vec3 vdir = normalize(-g_fragWorldPos.xyz);\ \n vec3 normal = gradient.xyz;\ \n vec3 ambient = vec3(0.0);\ \n vec3 diffuse = vec3(0.0);\ @@ -890,12 +896,6 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n for (int lightNum = 0; lightNum < in_numberOfLights; lightNum++)\ \n {\ \n vec3 ldir = in_lightDirection[lightNum].xyz;\ - \n vec3 h = normalize(ldir + vdir);\ - \n float nDotH = dot(normal, h);\ - \n if (nDotH < 0.0 && in_twoSidedLighting)\ - \n {\ - \n nDotH = -nDotH;\ - \n }\ \n float nDotL = dot(normal, ldir);\ \n if (nDotL < 0.0 && in_twoSidedLighting)\ \n {\ @@ -903,12 +903,18 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n }\ \n if (nDotL > 0.0)\ \n {\ - \n diffuse += in_lightDiffuseColor[lightNum] * nDotL;\ - \n }\ - \n if (nDotH > 0.0)\ - \n {\ - \n specular = in_lightSpecularColor[lightNum] *\ - \n pow(nDotH, in_shininess[component]);\ + \n diffuse += in_lightDiffuseColor[lightNum] * nDotL;\ + \n vec3 r = normalize(2.0 * nDotL * normal - ldir);\ + \n float rDotV = dot(r, -vdir);\ + \n if (rDotV < 0.0 && in_twoSidedLighting)\ + \n {\ + \n rDotV = -rDotV;\ + \n }\ + \n if (rDotV > 0.0)\ + \n {\ + \n specular = in_lightSpecularColor[lightNum] *\ + \n pow(rDotV, in_shininess[component]);\ + \n }\ \n }\ \n ambient += in_lightAmbientColor[lightNum];\ \n }\ @@ -973,19 +979,19 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n }\ \n if (nDotL > 0.0)\ \n {\ - \n float df = max(0.0, attenuation * nDotL);\ - \n diffuse += (df * in_lightDiffuseColor[lightNum]);\ - \n }\ - \n vec3 h = normalize(vertLightDirection + viewDirection);\ - \n float nDotH = dot(normal, h);\ - \n if (nDotH < 0.0 && in_twoSidedLighting)\ - \n {\ - \n nDotH = -nDotH;\ - \n }\ - \n if (nDotH > 0.0)\ - \n {\ - \n float sf = attenuation * pow(nDotH, in_shininess[component]);\ - \n specular += (sf * in_lightSpecularColor[lightNum]);\ + \n float df = max(0.0, attenuation * nDotL);\ + \n diffuse += (df * in_lightDiffuseColor[lightNum]);\ + \n vec3 r = normalize(2.0 * nDotL * normal - vertLightDirection);\ + \n float rDotV = dot(-viewDirection, r);\ + \n if (rDotV < 0.0 && in_twoSidedLighting)\ + \n {\ + \n rDotV = -rDotV;\ + \n }\ + \n if (rDotV > 0.0)\ + \n {\ + \n float sf = attenuation * pow(rDotV, in_shininess[component]);\ + \n specular += (sf * in_lightSpecularColor[lightNum]);\ + \n }\ \n }\ \n ambient += in_lightAmbientColor[lightNum];\ \n }\ @@ -1105,27 +1111,29 @@ std::string ComputeLightingMultiDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVol \n {\ \n normal = vec3(0.0, 0.0, 0.0);\ \n }\ - \n float nDotL = dot(normal, g_ldir[volIdx]);\ - \n float nDotH = dot(normal, g_h[volIdx]);\ + \n // normal is oriented inside the volume (because normal = gradient, oriented inside the volume)\ + \n // the we have to take minus everything. very clever\ + \n // it would probably be better to take normal = - gradient, but I'm afraid of breaking things\ + \n float nDotL = dot(normal, -g_ldir[volIdx]);\ + \n vec3 r = normalize(2.0 * nDotL * normal + g_ldir[volIdx]);\ + \n float vDotR = dot(r, -g_vdir[volIdx]);\ \n if (nDotL < 0.0 && in_twoSidedLighting)\ \n {\ \n nDotL = -nDotL;\ \n }\ - \n if (nDotH < 0.0 && in_twoSidedLighting)\ + \n if (vDotR < 0.0 && in_twoSidedLighting)\ \n {\ - \n nDotH = -nDotH;\ + \n vDotR = -vDotR;\ \n }\ \n if (nDotL > 0.0)\ \n {\ - \n diffuse = nDotL * in_diffuse[component] *\ - \n in_lightDiffuseColor[0] * color.rgb;\ + \n diffuse = nDotL * in_diffuse[component] *\ + \n in_lightDiffuseColor[0] * color.rgb;\ + \n specular = pow(vDotR, in_shininess[component]) *\ + \n in_specular[component] *\ + \n in_lightSpecularColor[0];\ \n }\ - \n specular = pow(nDotH, in_shininess[component]) *\ - \n in_specular[component] *\ - \n in_lightSpecularColor[0];\ - \n // For the headlight, ignore the light's ambient color\ - \n // for now as it is causing the old mapper tests to fail\ - \n finalColor.xyz = in_ambient[component] * color.rgb +\ + \n finalColor.xyz = in_ambient[component] * color.rgb * in_lightAmbientColor[0] +\ \n diffuse + specular;\ \n"); } -- GitLab From 686fadc1f67eb305cabccca4195c84e97925d34e Mon Sep 17 00:00:00 2001 From: Andras Lasso Date: Wed, 4 May 2022 11:40:19 -0400 Subject: [PATCH 0087/1015] Fix typo in comment --- Filters/Modeling/vtkSelectPolyData.h | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Filters/Modeling/vtkSelectPolyData.h b/Filters/Modeling/vtkSelectPolyData.h index c821e6158a50..62d3d657f753 100644 --- a/Filters/Modeling/vtkSelectPolyData.h +++ b/Filters/Modeling/vtkSelectPolyData.h @@ -52,7 +52,7 @@ * B) Dijkstra shortest path. This method guarantees to find the shortest * path between the loop points. * - * By default the greedu edge tracking method is used to preserve + * By default the greedy edge tracking method is used to preserve * backward compatibility, but generally the Dijkstra shortest path * method is recommended due to its robustness. * -- GitLab From 543f2cb8ae132b66819894f446f78fc2bccf99cf Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Wed, 4 May 2022 14:10:59 -0400 Subject: [PATCH 0088/1015] Gradient Test fix `TestGradientAndVorticity` had a `return EXIT_SUCESS` leftover before the test ends. There were some little issues downstream in the test. They are addressed. --- .../Testing/Cxx/TestGradientAndVorticity.cxx | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/Filters/General/Testing/Cxx/TestGradientAndVorticity.cxx b/Filters/General/Testing/Cxx/TestGradientAndVorticity.cxx index dc2d487a569e..13dec0141910 100644 --- a/Filters/General/Testing/Cxx/TestGradientAndVorticity.cxx +++ b/Filters/General/Testing/Cxx/TestGradientAndVorticity.cxx @@ -465,7 +465,7 @@ int TestPoints(vtkImageData* grid, vtkUnstructuredGrid* ref) } //------------------------------------------------------------------------------ -int TestCells(vtkImageData* grid, vtkUnstructuredGrid* ref) +int TestCells(vtkImageData* grid, vtkPointSet* ref) { auto gridArray = vtkArrayDownCast(grid->GetCellData()->GetAbstractArray("Pres")); auto refArray = vtkArrayDownCast(ref->GetPointData()->GetAbstractArray("Pres")); @@ -480,9 +480,9 @@ int TestCells(vtkImageData* grid, vtkUnstructuredGrid* ref) for (vtkIdType pointId = 0; pointId < ref->GetNumberOfPoints(); ++pointId) { ref->GetPoint(pointId, refPoint); - ijk[0] = (refPoint[0] - bounds[0]) / (bounds[1] - bounds[0]) * width[0]; - ijk[1] = (refPoint[1] - bounds[2]) / (bounds[3] - bounds[2]) * width[1]; - ijk[2] = (refPoint[2] - bounds[4]) / (bounds[5] - bounds[4]) * width[2]; + ijk[0] = (refPoint[0] - bounds[0]) / (bounds[1] - bounds[0]) * (width[0] - 1); + ijk[1] = (refPoint[1] - bounds[2]) / (bounds[3] - bounds[2]) * (width[1] - 1); + ijk[2] = (refPoint[2] - bounds[4]) / (bounds[5] - bounds[4]) * (width[2] - 1); vtkIdType gridPointId = vtkStructuredData::ComputeCellId(width, ijk); if (std::abs(gridArray->GetValue(gridPointId) - refArray->GetValue(pointId)) > 1e-6) @@ -627,7 +627,6 @@ int TestGradientAndVorticity(int argc, char* argv[]) { return EXIT_FAILURE; } - return EXIT_SUCCESS; vtkNew point2cell; point2cell->SetInputConnection(resampler->GetOutputPort()); @@ -638,6 +637,7 @@ int TestGradientAndVorticity(int argc, char* argv[]) vtkNew ugCellConverter; ugCellConverter->SetInputConnection(cellGradient->GetOutputPort()); + ugCellConverter->SetInputArrayToProcess(0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_CELLS, "Pres"); ugCellConverter->SetLowerThreshold(-std::numeric_limits::infinity()); ugCellConverter->SetUpperThreshold(std::numeric_limits::infinity()); @@ -646,13 +646,14 @@ int TestGradientAndVorticity(int argc, char* argv[]) cellRefGradient->SetInputConnection(ugCellConverter->GetOutputPort()); vtkNew cellCenterRefGradient; + cellCenterRefGradient->CopyArraysOn(); cellCenterRefGradient->SetInputConnection(cellRefGradient->GetOutputPort()); cellCenterRefGradient->Update(); cellGradient->Update(); if (TestCells(vtkImageData::SafeDownCast(cellGradient->GetOutput()), - vtkUnstructuredGrid::SafeDownCast(cellCenterRefGradient->GetOutput()))) + vtkPointSet::SafeDownCast(cellCenterRefGradient->GetOutput()))) { return EXIT_FAILURE; } -- GitLab From 538eb4a42229f44359ba4a08573d0efe226c420d Mon Sep 17 00:00:00 2001 From: Utkarsh Ayachit Date: Thu, 30 Dec 2021 15:09:32 -0500 Subject: [PATCH 0089/1015] vtkIOSSUtilities: remove cell global ids from nodesets NodeSets were assigned cell-global ids, which don't really exist. Fixed that. This was causing the node set to get assigned point gids as cell gids which has the potential to conflict with other cell gids thus breaking the uniqueness requirement. Fixed that. --- IO/IOSS/vtkIOSSReader.cxx | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/IO/IOSS/vtkIOSSReader.cxx b/IO/IOSS/vtkIOSSReader.cxx index 79d949f5f674..838ef77cdee6 100644 --- a/IO/IOSS/vtkIOSSReader.cxx +++ b/IO/IOSS/vtkIOSSReader.cxx @@ -2494,11 +2494,13 @@ bool vtkIOSSReader::vtkInternals::GetFields(vtkDataSetAttributes* dsa, case Ioss::EntityType::EDGEBLOCK: case Ioss::EntityType::FACEBLOCK: case Ioss::EntityType::ELEMENTBLOCK: - case Ioss::EntityType::NODESET: fieldnames.emplace_back("ids"); globalIdsFieldName = "ids"; break; + case Ioss::EntityType::NODESET: + break; + case Ioss::EntityType::STRUCTUREDBLOCK: if (vtkPointData::SafeDownCast(dsa)) { -- GitLab From 8b169fd5f305faebc624ce6f5be5dc94ac9b7043 Mon Sep 17 00:00:00 2001 From: Utkarsh Ayachit Date: Wed, 4 May 2022 10:40:16 -0400 Subject: [PATCH 0090/1015] vtkIOSSFilesScanner: add support for restarts with "exo" Since we're using `exo` as the extensions of IOSS writer for now, let's make the reader detect restarts with `exo-` in the filename as well. Previously, we only supported e|g. --- IO/IOSS/vtkIOSSFilesScanner.cxx | 24 +++++++++++++++++++++++- 1 file changed, 23 insertions(+), 1 deletion(-) diff --git a/IO/IOSS/vtkIOSSFilesScanner.cxx b/IO/IOSS/vtkIOSSFilesScanner.cxx index f73be73977e0..d89a80b5870f 100644 --- a/IO/IOSS/vtkIOSSFilesScanner.cxx +++ b/IO/IOSS/vtkIOSSFilesScanner.cxx @@ -108,6 +108,8 @@ std::set vtkIOSSFilesScanner::GetRelatedFiles( // where `-s{RS}` and/or `.{NUMRANKS}.{RANK}` is optional. vtksys::RegularExpression extensionRegexExodus( R"(^(.*\.[eg][^-.]*)(-s.[0-9]+)?(\.[0-9]+(\.[0-9]+)?)?$)"); + vtksys::RegularExpression extensionRegexExodus2( + R"(^(.*\.exo[^-.]*)(-s.[0-9]+)?(\.[0-9]+(\.[0-9]+)?)?$)"); vtksys::RegularExpression extensionRegexCGNS( R"(^(.*\.cgns[^-.]*)(-s.[0-9]+)?(\.[0-9]+(\.[0-9]+)?)?$)"); @@ -136,7 +138,13 @@ std::set vtkIOSSFilesScanner::GetRelatedFiles( // this happens if the unix_fname was not a full path. fname_wo_path = unix_fname; } - if (extensionRegexExodus.find(fname_wo_path)) + + if (extensionRegexExodus2.find(fname_wo_path)) + { + prefixes.insert( + std::make_pair(extensionRegexExodus2.match(1), getProcessCount(fname_wo_path))); + } + else if (extensionRegexExodus.find(fname_wo_path)) { prefixes.insert( std::make_pair(extensionRegexExodus.match(1), getProcessCount(fname_wo_path))); @@ -216,6 +224,20 @@ bool vtkIOSSFilesScanner::DoTestFilePatternMatching() return false; } + if (!verify({ "mysimoutput.exo-s.000" }, + { "mysimoutput.exo-s.000", "mysimoutput.exo-s.001", "mysimoutput.exo-s.002" }, + { "mysimoutput.exo-s.000", "mysimoutput.exo-s.001", "mysimoutput.exo-s.002" })) + { + return false; + } + + if (!verify({ "mysimoutput.exo-s00" }, + { "mysimoutput.exo-s00", "mysimoutput.exo-s01", "mysimoutput.exo-s02" }, + { "mysimoutput.exo-s00", "mysimoutput.exo-s01", "mysimoutput.exo-s02" })) + { + return false; + } + if (!verify({ "/tmp/mysimoutput.e-s.000" }, { "mysimoutput.e-s.000", "mysimoutput.e-s.001", "mysimoutput.e-s.002" }, { "/tmp/mysimoutput.e-s.000", "/tmp/mysimoutput.e-s.001", "/tmp/mysimoutput.e-s.002" })) -- GitLab From 67d42e64a97ec9716350c10609f37dbefb0f819c Mon Sep 17 00:00:00 2001 From: Sean McBride Date: Wed, 27 Apr 2022 15:59:00 -0400 Subject: [PATCH 0091/1015] Improve fallback upon lack of C++11 thread_local specifier - removed configure-time check that defines VTK_HAS_THREADLOCAL - introduced new VTK_THREAD_LOCAL macro in vtkSetGet.h that wraps raw thread_local keyword - replaced all uses of thread_local with VTK_THREAD_LOCAL - fallback to _Thread_local keyword with Xcode < 8 --- Common/Core/CMakeLists.txt | 11 ----------- Common/Core/vtkLogger.cxx | 7 ++----- Common/Core/vtkObjectBase.cxx | 26 ++++++-------------------- Common/Core/vtkSetGet.h | 10 ++++++++++ Common/Math/vtkReservoirSampler.cxx | 2 +- Common/Math/vtkReservoirSampler.h | 4 ++-- IO/LSDyna/vtkLSDynaReader.cxx | 4 ++-- 7 files changed, 23 insertions(+), 41 deletions(-) diff --git a/Common/Core/CMakeLists.txt b/Common/Core/CMakeLists.txt index 3e1ea65a5bf0..06cc37ff3535 100644 --- a/Common/Core/CMakeLists.txt +++ b/Common/Core/CMakeLists.txt @@ -517,21 +517,10 @@ configure_file( "${CMAKE_CURRENT_SOURCE_DIR}/vtkFloatingPointExceptionsConfigure.h.in" "${CMAKE_CURRENT_BINARY_DIR}/vtkFloatingPointExceptionsConfigure.h") -# Allow work arounds for lack of thread_local on odd compilers -set(vtk_logger_defines) -if (NOT (CMAKE_CXX_COMPILER_ID STREQUAL "AppleClang" AND CMAKE_CXX_COMPILER_VERSION VERSION_LESS 9.0) ) - list(APPEND vtk_object_base_defines "VTK_HAS_THREADLOCAL") - list(APPEND vtk_logger_defines "VTK_HAS_THREADLOCAL") -endif () - set_property(SOURCE vtkObjectBase.cxx PROPERTY COMPILE_DEFINITIONS ${vtk_object_base_defines}) -set_property(SOURCE vtkLogger.cxx - PROPERTY - COMPILE_DEFINITIONS ${vtk_logger_defines}) - if(MSVC) set_source_files_properties( vtkDataArray.cxx diff --git a/Common/Core/vtkLogger.cxx b/Common/Core/vtkLogger.cxx index d02f26f2bad9..b4799e443686 100644 --- a/Common/Core/vtkLogger.cxx +++ b/Common/Core/vtkLogger.cxx @@ -107,11 +107,8 @@ static void pop_scope(const char* id) } } #endif -#ifdef VTK_HAS_THREADLOCAL -static thread_local std::string ThreadName; -#else -static std::string ThreadName; -#endif + +static VTK_THREAD_LOCAL std::string ThreadName; } //============================================================================= diff --git a/Common/Core/vtkObjectBase.cxx b/Common/Core/vtkObjectBase.cxx index 07e92d6749da..a6ee1db825d8 100644 --- a/Common/Core/vtkObjectBase.cxx +++ b/Common/Core/vtkObjectBase.cxx @@ -368,33 +368,19 @@ void vtkObjectBase::ReportReferences(vtkGarbageCollector*) namespace { -#ifdef VTK_HAS_THREADLOCAL #ifdef VTK_USE_MEMKIND -thread_local char* MemkindDirectory = nullptr; -#endif -thread_local bool UsingMemkind = false; -thread_local vtkMallocingFunction CurrentMallocFunction = malloc; -thread_local vtkReallocingFunction CurrentReallocFunction = realloc; -thread_local vtkFreeingFunction CurrentFreeFunction = free; -thread_local vtkFreeingFunction AlternateFreeFunction = vtkCustomFree; -#else -#ifdef VTK_USE_MEMKIND -char* MemkindDirectory = nullptr; -#endif -bool UsingMemkind = false; -vtkMallocingFunction CurrentMallocFunction = malloc; -vtkReallocingFunction CurrentReallocFunction = realloc; -vtkFreeingFunction CurrentFreeFunction = free; -vtkFreeingFunction AlternateFreeFunction = vtkCustomFree; +VTK_THREAD_LOCAL char* MemkindDirectory = nullptr; #endif +VTK_THREAD_LOCAL bool UsingMemkind = false; +VTK_THREAD_LOCAL vtkMallocingFunction CurrentMallocFunction = malloc; +VTK_THREAD_LOCAL vtkReallocingFunction CurrentReallocFunction = realloc; +VTK_THREAD_LOCAL vtkFreeingFunction CurrentFreeFunction = free; +VTK_THREAD_LOCAL vtkFreeingFunction AlternateFreeFunction = vtkCustomFree; } //------------------------------------------------------------------------------ void vtkObjectBase::SetMemkindDirectory(const char* directoryname) { -#ifndef VTK_HAS_THREADLOCAL - vtkGenericWarningMacro(<< "Warning, memkind features are not thread safe on this platform."); -#endif #ifdef VTK_USE_MEMKIND if (MemkindDirectory == nullptr && MemkindHandle == nullptr) { diff --git a/Common/Core/vtkSetGet.h b/Common/Core/vtkSetGet.h index 195f587b526b..795a5f6719d4 100644 --- a/Common/Core/vtkSetGet.h +++ b/Common/Core/vtkSetGet.h @@ -1232,6 +1232,16 @@ public: #define VTK_FALLTHROUGH ((void)0) #endif +// XXX(xcode-8) +// AppleClang first supported thread_local only by Xcode 8, for older Xcodes +// fall back to the non-standard __thread which is equivalent for many, but +// not all, cases. Notably, it has limitations on variable scope. +#if defined(__apple_build_version__) && (__clang_major__ < 8) +#define VTK_THREAD_LOCAL _Thread_local +#else +#define VTK_THREAD_LOCAL thread_local +#endif + //---------------------------------------------------------------------------- // Macro to generate bitflag operators for C++11 scoped enums. diff --git a/Common/Math/vtkReservoirSampler.cxx b/Common/Math/vtkReservoirSampler.cxx index c07fc37884c5..1f6ae11c06f0 100644 --- a/Common/Math/vtkReservoirSampler.cxx +++ b/Common/Math/vtkReservoirSampler.cxx @@ -16,6 +16,6 @@ vtkReservoirSamplerBase::SeedType vtkReservoirSamplerBase::RandomSeed() { - thread_local std::random_device device; + VTK_THREAD_LOCAL std::random_device device; return device(); } diff --git a/Common/Math/vtkReservoirSampler.h b/Common/Math/vtkReservoirSampler.h index e227cd781bb8..d7960850cfc4 100644 --- a/Common/Math/vtkReservoirSampler.h +++ b/Common/Math/vtkReservoirSampler.h @@ -56,7 +56,7 @@ public: /// This will throw an exception if kk <= 0. const std::vector& operator()(Integer kk, Integer nn) const { - thread_local static std::vector data; + VTK_THREAD_LOCAL static std::vector data; this->GenerateSample(kk, nn, data); return data; } @@ -66,7 +66,7 @@ public: /// This will throw an exception if kk <= 0. const std::vector& operator()(Integer kk, vtkAbstractArray* array) const { - thread_local static std::vector data; + VTK_THREAD_LOCAL static std::vector data; if (!array) { throw std::invalid_argument("Null arrays are disallowed."); diff --git a/IO/LSDyna/vtkLSDynaReader.cxx b/IO/LSDyna/vtkLSDynaReader.cxx index 93626aa8dc1f..9be5a7c0710d 100644 --- a/IO/LSDyna/vtkLSDynaReader.cxx +++ b/IO/LSDyna/vtkLSDynaReader.cxx @@ -745,7 +745,7 @@ std::string vtkLSDynaReader::GetDatabaseDirectory() #else const char* vtkLSDynaReader::GetDatabaseDirectory() { - static thread_local std::string surrogate; + static VTK_THREAD_LOCAL std::string surrogate; surrogate = this->P->Fam.GetDatabaseDirectory(); return surrogate.c_str(); } @@ -810,7 +810,7 @@ std::string vtkLSDynaReader::GetFileName() #else const char* vtkLSDynaReader::GetFileName() { - static thread_local std::string surrogate; + static VTK_THREAD_LOCAL std::string surrogate; surrogate = this->P->Fam.GetDatabaseDirectory() + "/d3plot"; return surrogate.c_str(); } -- GitLab From 19f14300dc0ae8e4b5881ada4deb25e2aaa93401 Mon Sep 17 00:00:00 2001 From: Sean McBride Date: Thu, 14 Apr 2022 13:39:30 -0400 Subject: [PATCH 0092/1015] Fixed Thread Sanitizer complaint by making variable atomic Without this multiple threads are accessing IsParallel simultaneously without any synchroniztion/mutex. --- Common/Core/SMP/Common/vtkSMPToolsImpl.h | 4 +++- Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx | 17 ++++++++++----- Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx | 19 +++++++++++------ Common/Core/SMP/TBB/vtkSMPToolsImpl.txx | 21 +++++++++++++------ 4 files changed, 43 insertions(+), 18 deletions(-) diff --git a/Common/Core/SMP/Common/vtkSMPToolsImpl.h b/Common/Core/SMP/Common/vtkSMPToolsImpl.h index 9c82ac6d88b1..0fa8b5b6e670 100644 --- a/Common/Core/SMP/Common/vtkSMPToolsImpl.h +++ b/Common/Core/SMP/Common/vtkSMPToolsImpl.h @@ -20,6 +20,8 @@ #include "vtkObject.h" #include "vtkSMP.h" +#include + #define VTK_SMP_MAX_BACKENDS_NB 4 #define VTK_SMP_BACKEND_SEQUENTIAL 0 @@ -98,7 +100,7 @@ public: private: bool NestedActivated = true; - bool IsParallel = false; + std::atomic IsParallel{ false }; }; using ExecuteFunctorPtrType = void (*)(void*, vtkIdType, vtkIdType, vtkIdType); diff --git a/Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx b/Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx index 6ca40ee37b34..581df72242f1 100644 --- a/Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx +++ b/Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx @@ -61,17 +61,24 @@ void vtkSMPToolsImpl::For( } else { - // this->IsParallel may have threads conficts but it will be always between true and true, - // it is set to false only in sequential code. // /!\ This behaviour should be changed if we want more control on nested // (e.g only the 2 first nested For are in parallel) - bool fromParallelCode = this->IsParallel; - this->IsParallel = true; + bool fromParallelCode = this->IsParallel.exchange(true); vtkSMPToolsImplForOpenMP( first, last, grain, ExecuteFunctorOpenMP, &fi, this->NestedActivated); - this->IsParallel &= fromParallelCode; + // Atomic contortion to achieve this->IsParallel &= fromParallelCode. + // This compare&exchange basically boils down to: + // if (IsParallel == trueFlag) + // IsParallel = fromParallelCode; + // else + // trueFlag = IsParallel; + // Which either leaves IsParallel as false or sets it to fromParallelCode (i.e. &=). + // Note that the return value of compare_exchange_weak() is not needed, + // and that no looping is necessary. + bool trueFlag = true; + this->IsParallel.compare_exchange_weak(trueFlag, fromParallelCode); } } diff --git a/Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx b/Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx index 9d059b748d24..45cf1d32c9ba 100644 --- a/Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx +++ b/Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx @@ -55,7 +55,7 @@ void vtkSMPToolsImpl::For( return; } - if (grain >= n || (this->IsParallel && !this->NestedActivated)) + if (grain >= n || (!this->NestedActivated && this->IsParallel)) { fi.Execute(first, last); } @@ -69,12 +69,9 @@ void vtkSMPToolsImpl::For( grain = (estimateGrain > 0) ? estimateGrain : 1; } - // this->IsParallel may have threads conficts but it will be always between true and true, - // it is set to false only in sequential code. // /!\ This behaviour should be changed if we want more control on nested // (e.g only the 2 first nested For are in parallel) - bool fromParallelCode = this->IsParallel; - this->IsParallel = true; + bool fromParallelCode = this->IsParallel.exchange(true); vtkSMPThreadPool pool(threadNumber); for (vtkIdType from = first; from < last; from += grain) @@ -84,7 +81,17 @@ void vtkSMPToolsImpl::For( } pool.Join(); - this->IsParallel &= fromParallelCode; + // Atomic contortion to achieve this->IsParallel &= fromParallelCode. + // This compare&exchange basically boils down to: + // if (IsParallel == trueFlag) + // IsParallel = fromParallelCode; + // else + // trueFlag = IsParallel; + // Which either leaves IsParallel as false or sets it to fromParallelCode (i.e. &=). + // Note that the return value of compare_exchange_weak() is not needed, + // and that no looping is necessary. + bool trueFlag = true; + this->IsParallel.compare_exchange_weak(trueFlag, fromParallelCode); } } diff --git a/Common/Core/SMP/TBB/vtkSMPToolsImpl.txx b/Common/Core/SMP/TBB/vtkSMPToolsImpl.txx index 2427ca27f2a9..dcc7189b69ec 100644 --- a/Common/Core/SMP/TBB/vtkSMPToolsImpl.txx +++ b/Common/Core/SMP/TBB/vtkSMPToolsImpl.txx @@ -109,20 +109,29 @@ template void vtkSMPToolsImpl::For( vtkIdType first, vtkIdType last, vtkIdType grain, FunctorInternal& fi) { - if (this->IsParallel && !this->NestedActivated) + if (!this->NestedActivated && this->IsParallel) { fi.Execute(first, last); } else { - // this->IsParallel may have threads conficts but it will be always between true and true, - // it is set to false only in sequential code. // /!\ This behaviour should be changed if we want more control on nested // (e.g only the 2 first nested For are in parallel) - bool fromParallelCode = this->IsParallel; - this->IsParallel = true; + bool fromParallelCode = this->IsParallel.exchange(true); + vtkSMPToolsImplForTBB(first, last, grain, ExecuteFunctorTBB, &fi); - this->IsParallel &= fromParallelCode; + + // Atomic contortion to achieve this->IsParallel &= fromParallelCode. + // This compare&exchange basically boils down to: + // if (IsParallel == trueFlag) + // IsParallel = fromParallelCode; + // else + // trueFlag = IsParallel; + // Which either leaves IsParallel as false or sets it to fromParallelCode (i.e. &=). + // Note that the return value of compare_exchange_weak() is not needed, + // and that no looping is necessary. + bool trueFlag = true; + this->IsParallel.compare_exchange_weak(trueFlag, fromParallelCode); } } -- GitLab From bbaab8dc65991db69b2327171742c3d9b7729827 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Thu, 5 May 2022 00:01:41 -0400 Subject: [PATCH 0093/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 0482b7c06b6d..1f609d8c0e8f 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220504) +set(VTK_BUILD_VERSION 20220505) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 12d1a4b25914a3ca1d2da160834973b45a49de34 Mon Sep 17 00:00:00 2001 From: Nicolas Vuaille Date: Wed, 4 May 2022 16:50:24 +0200 Subject: [PATCH 0094/1015] Print only source filename without path in logging message * In logging macro, we use `__FILE__` to identify source file. This use to be the full absolute path (due to CMake). This is not relevant. Use the file name. --- Common/Core/vtkSetGet.h | 13 +++++++++---- 1 file changed, 9 insertions(+), 4 deletions(-) diff --git a/Common/Core/vtkSetGet.h b/Common/Core/vtkSetGet.h index 195f587b526b..8b149e9fd242 100644 --- a/Common/Core/vtkSetGet.h +++ b/Common/Core/vtkSetGet.h @@ -32,6 +32,7 @@ #include "vtkLegacy.h" #include "vtkOptions.h" #include "vtkSystemIncludes.h" +#include "vtksys/SystemTools.hxx" #include // for std::underlying type. #include @@ -776,7 +777,8 @@ extern VTKCOMMONCORE_EXPORT void vtkOutputWindowDisplayDebugText( vtkOStreamWrapper::UseEndl(endl); \ vtkOStrStreamWrapper vtkmsg; \ vtkmsg << "" x; \ - vtkOutputWindowDisplayGenericWarningText(__FILE__, __LINE__, vtkmsg.str()); \ + std::string filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ + vtkOutputWindowDisplayGenericWarningText(filename.c_str(), __LINE__, vtkmsg.str()); \ vtkmsg.rdbuf()->freeze(0); \ } \ } while (false) @@ -824,7 +826,8 @@ extern VTKCOMMONCORE_EXPORT void vtkOutputWindowDisplayDebugText( vtkmsg << "(nullptr): "; \ } \ vtkmsg << "" x; \ - vtkOutputWindowDisplayErrorText(__FILE__, __LINE__, vtkmsg.str(), _object); \ + std::string filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ + vtkOutputWindowDisplayErrorText(filename.c_str(), __LINE__, vtkmsg.str(), _object); \ vtkmsg.rdbuf()->freeze(0); \ vtkObject::BreakOnError(); \ } \ @@ -855,7 +858,8 @@ extern VTKCOMMONCORE_EXPORT void vtkOutputWindowDisplayDebugText( vtkmsg << "(nullptr): "; \ } \ vtkmsg << "" x; \ - vtkOutputWindowDisplayWarningText(__FILE__, __LINE__, vtkmsg.str(), _object); \ + std::string filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ + vtkOutputWindowDisplayWarningText(filename.c_str(), __LINE__, vtkmsg.str(), _object); \ vtkmsg.rdbuf()->freeze(0); \ } \ } while (false) @@ -891,7 +895,8 @@ extern VTKCOMMONCORE_EXPORT void vtkOutputWindowDisplayDebugText( vtkmsg << "(nullptr): "; \ } \ vtkmsg << "" x; \ - vtkOutputWindowDisplayDebugText(__FILE__, __LINE__, vtkmsg.str(), _object); \ + std::string filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ + vtkOutputWindowDisplayDebugText(filename.c_str(), __LINE__, vtkmsg.str(), _object); \ vtkmsg.rdbuf()->freeze(0); \ } \ } while (false) -- GitLab From 566a743152aa55e48ebd1de4048657f16f623041 Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Wed, 20 Apr 2022 12:02:55 +0200 Subject: [PATCH 0095/1015] Add density gradient support This commit adds the possibility to use the gradient of opacity (instead of the scalar gradient) for shading in vtkGPUVolumeRayCastMapper. It is also exposed in vtkSmartVolumeMapper. --- Rendering/Volume/vtkGPUVolumeRayCastMapper.h | 17 + .../VolumeOpenGL2/shaders/raycasterfs.glsl | 6 +- .../vtkOpenGLGPUVolumeRayCastMapper.cxx | 15 +- .../VolumeOpenGL2/vtkSmartVolumeMapper.cxx | 2 + .../VolumeOpenGL2/vtkSmartVolumeMapper.h | 20 + .../VolumeOpenGL2/vtkVolumeShaderComposer.h | 499 +++++++++++++++--- 6 files changed, 494 insertions(+), 65 deletions(-) diff --git a/Rendering/Volume/vtkGPUVolumeRayCastMapper.h b/Rendering/Volume/vtkGPUVolumeRayCastMapper.h index a1a6ad664fc2..c223d47d1141 100644 --- a/Rendering/Volume/vtkGPUVolumeRayCastMapper.h +++ b/Rendering/Volume/vtkGPUVolumeRayCastMapper.h @@ -315,6 +315,21 @@ public: vtkBooleanMacro(ClampDepthToBackface, vtkTypeBool); ///@} + ///@{ + /** + * If enabled, the volume(s) whose shading is enabled will use the gradient + * of opacity instead of the scalar gradient to estimate the surface's normal + * when applying the shading model. The opacity considered for the gradient + * is then the scalars converted to opacity by the transfer function(s). + * For now it is only supported in vtkGPUVolumeRayCastMapper. + * Note that enabling it might affect performances, espacially when + * using a 2D TF or a gradient opacity. It is disabled by default. + */ + vtkSetMacro(ComputeNormalFromOpacity, bool); + vtkGetMacro(ComputeNormalFromOpacity, bool); + vtkBooleanMacro(ComputeNormalFromOpacity, bool); + ///@} + /** * Low level API to export the depth texture as vtkImageData in * RenderToImage mode. @@ -597,6 +612,8 @@ protected: */ DataMap LastInputs; + bool ComputeNormalFromOpacity = false; + /** * Define the array used for the Y axis of transfer 2D. * This is used when the transfer function mode is set to 2D. If unset, the diff --git a/Rendering/VolumeOpenGL2/shaders/raycasterfs.glsl b/Rendering/VolumeOpenGL2/shaders/raycasterfs.glsl index 27b93066e8c6..6d62d2cf91d4 100644 --- a/Rendering/VolumeOpenGL2/shaders/raycasterfs.glsl +++ b/Rendering/VolumeOpenGL2/shaders/raycasterfs.glsl @@ -78,11 +78,15 @@ vec3 g_terminatePos; //VTK::Transfer2D::Dec +//VTK::ComputeGradientOpacity1D::Dec + //VTK::ComputeOpacity::Dec +//VTK::ComputeOpacity2DWithGradient::Dec + //VTK::ComputeGradient::Dec -//VTK::ComputeGradientOpacity1D::Dec +//VTK::ComputeDensityGradient::Dec //VTK::ComputeLighting::Dec diff --git a/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx b/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx index 239eece5e2f8..33086d13d336 100644 --- a/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx +++ b/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx @@ -2145,9 +2145,6 @@ vtkOpenGLGPUVolumeRayCastMapper::vtkOpenGLGPUVolumeRayCastMapper() this->ResourceCallback = new vtkOpenGLResourceFreeCallback( this, &vtkOpenGLGPUVolumeRayCastMapper::ReleaseGraphicsResources); - - // this->VolumeTexture = vtkVolumeTexture::New(); - // this->VolumeTexture->SetMapper(this); } //------------------------------------------------------------------------------ @@ -2428,6 +2425,13 @@ void vtkOpenGLGPUVolumeRayCastMapper::ReplaceShaderCompute( vtkShaderProgram::Substitute(fragmentShader, "//VTK::ComputeGradient::Dec", vtkvolume::ComputeGradientDeclaration(this, this->AssembledInputs)); + if (this->ComputeNormalFromOpacity) + { + vtkShaderProgram::Substitute(fragmentShader, "//VTK::ComputeDensityGradient::Dec", + vtkvolume::ComputeDensityGradientDeclaration(this, this->AssembledInputs, numComps, + independentComponents, this->Impl->Transfer2DUseGradient)); + } + if (this->Impl->MultiVolume) { vtkShaderProgram::Substitute(fragmentShader, "//VTK::GradientCache::Dec", @@ -2477,6 +2481,11 @@ void vtkOpenGLGPUVolumeRayCastMapper::ReplaceShaderCompute( vtkvolume::ComputeOpacity2DDeclaration(ren, this, vol, numComps, independentComponents, this->AssembledInputs[0].TransferFunctions2DMap, this->Impl->Transfer2DUseGradient)); + vtkShaderProgram::Substitute(fragmentShader, "//VTK::ComputeOpacity2DWithGradient::Dec", + vtkvolume::ComputeOpacity2DWithGradientDeclaration(ren, this, vol, numComps, + independentComponents, this->AssembledInputs[0].TransferFunctions2DMap, + this->Impl->Transfer2DUseGradient)); + vtkShaderProgram::Substitute(fragmentShader, "//VTK::ComputeColor::Dec", vtkvolume::ComputeColor2DDeclaration(ren, this, vol, numComps, independentComponents, this->AssembledInputs[0].TransferFunctions2DMap, this->Impl->Transfer2DUseGradient)); diff --git a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx index a8d02bd4eaf9..897f230a5409 100644 --- a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx +++ b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx @@ -94,6 +94,7 @@ vtkSmartVolumeMapper::vtkSmartVolumeMapper() // also true for the GPU ray cast mapper. this->RayCastMapper->LockSampleDistanceToInputSpacingOn(); this->GPUMapper->LockSampleDistanceToInputSpacingOn(); + this->GPUMapper->SetComputeNormalFromOpacity(this->ComputeNormalFromOpacity); // Default to the default mode - which will use the best option that // is supported by the hardware @@ -465,6 +466,7 @@ void vtkSmartVolumeMapper::ComputeRenderMode(vtkRenderer* ren, vtkVolume* vol) this->GPUMapper->SetFinalColorLevel(this->FinalColorLevel); this->GPUMapper->SetSampleDistance(this->SampleDistance); this->GPUMapper->SetTransfer2DYAxisArray(this->Transfer2DYAxisArray); + this->GPUMapper->SetComputeNormalFromOpacity(this->ComputeNormalFromOpacity); // Make the window current because we need the OpenGL context win->MakeCurrent(); diff --git a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h index e69b6a83942c..06c00c0113ea 100644 --- a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h +++ b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h @@ -293,6 +293,21 @@ public: vtkGetMacro(SampleDistance, float); ///@} + ///@{ + /** + * If enabled, the volume(s) whose shading is enabled will use the gradient + * of opacity instead of the scalar gradient to estimate the surface's normal + * when applying the shading model. The opacity considered for the gradient + * is then the scalars converted to opacity by the transfer function(s). + * For now it is only supported in vtkGPUVolumeRayCastMapper. + * Note that enabling it might affect performances, espacially when + * using a 2D TF or a gradient opacity. It is disabled by default. + */ + vtkSetMacro(ComputeNormalFromOpacity, bool); + vtkGetMacro(ComputeNormalFromOpacity, bool); + vtkBooleanMacro(ComputeNormalFromOpacity, bool); + ///@} + /** * WARNING: INTERNAL METHOD - NOT INTENDED FOR GENERAL USE * Initialize rendering for this volume. @@ -456,6 +471,11 @@ protected: */ float SampleDistance; + /** + * Is the normal for volume shading computed from opacity or from scalars + */ + bool ComputeNormalFromOpacity = false; + /** * Set whether or not the sample distance should be automatically calculated * within the internal volume mapper diff --git a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h index 07751855707c..28e01f9fb9e0 100644 --- a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h +++ b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h @@ -610,38 +610,42 @@ std::string ComputeGradientOpacity1DDecl(vtkVolume* vol, int noOfComponents, } std::string shaderStr = ss.str(); - if (volProperty->HasGradientOpacity() && (noOfComponents == 1 || !independentComponents)) - { - shaderStr += std::string("\ - \nfloat computeGradientOpacity(vec4 grad)\ - \n {\ - \n return texture2D(" + - gradientTableMap[0] + ", vec2(grad.w, 0.0)).r;\ - \n }"); - } - else if (noOfComponents > 1 && independentComponents && volProperty->HasGradientOpacity()) + + if (volProperty->HasGradientOpacity() && noOfComponents > 0) { - shaderStr += std::string("\ + if (noOfComponents == 1 || !independentComponents) + { + shaderStr += std::string("\ + \nfloat computeGradientOpacity(vec4 grad)\ + \n {\ + \n return texture2D(" + + gradientTableMap[0] + ", vec2(grad.w, 0.0)).r;\ + \n }"); + } + else + { + shaderStr += std::string("\ \nfloat computeGradientOpacity(vec4 grad, int component)\ \n {"); - for (int i = 0; i < noOfComponents; ++i) - { - std::ostringstream toString; - toString << i; - shaderStr += std::string("\ - \n if (component == " + - toString.str() + ")"); + for (int i = 0; i < noOfComponents; ++i) + { + std::ostringstream toString; + toString << i; + shaderStr += std::string("\ + \n if (component == " + + toString.str() + ")"); + + shaderStr += std::string("\ + \n {\ + \n return texture2D(" + + gradientTableMap[i] + ", vec2(grad.w, 0.0)).r;\ + \n }"); + } shaderStr += std::string("\ - \n {\ - \n return texture2D(" + - gradientTableMap[i] + ", vec2(grad.w, 0.0)).r;\ - \n }"); + \n }"); } - - shaderStr += std::string("\ - \n }"); } if (useLabelGradientOpacity) @@ -787,16 +791,344 @@ std::string ComputeGradientDeclaration( return shaderStr; } +//-------------------------------------------------------------------------- +std::string ComputeOpacity2DWithGradientDeclaration(vtkRenderer* vtkNotUsed(ren), + vtkVolumeMapper* vtkNotUsed(mapper), vtkVolume* vtkNotUsed(vol), int noOfComponents, + int independentComponents, std::map opacityTableMap, int useGradient) +{ + std::string resStr; + std::string functionBody; + bool severalIndpt = noOfComponents > 1 && independentComponents; + std::string functionSignature = severalIndpt + ? "float computeOpacityWithGrad(vec4 scalar, vec4 grad, int component)\n" + : "float computeOpacityWithGrad(vec4 scalar, vec4 grad)\n"; + + if (severalIndpt) + { + // Multiple independent components + + if (!useGradient) + { + functionBody += + "vec4 yscalar = texture3D(in_transfer2DYAxis, g_dataPos);\n" + "for (int i = 0; i < 4; ++i)\n" + "{\n" + " yscalar[i] = yscalar[i] * in_transfer2DYAxis_scale[i] + in_transfer2DYAxis_bias[i];\n" + "}\n"; + } + + for (int i = 0; i < noOfComponents; ++i) + { + std::string secondAxis(useGradient + // we take the same grad for all components so we have to be sure that + // the one given as a parameter is computed wrt the right component + ? "grad.w" + : std::string("yscalar[") + std::to_string(i) + "]"); + + functionBody += " if(component == " + std::to_string(i) + + ")\n" + " {\n" + " return texture2D(" + + opacityTableMap[i] + ",\n" + " vec2(scalar[" + std::to_string(i) + "], " + secondAxis + + ")).a\n" + " }\n"; + } + } + + else if (noOfComponents == 2 && !independentComponents) + { + std::string secondAxis(useGradient ? "grad.w" : "yscalar.y"); + + functionBody += " return texture2D(" + opacityTableMap[0] + + ",\n" + " vec2(scalar.y, " + + secondAxis + ")).a;\n"; + } + + else + { + if (useGradient) + { + // Dependent components (RGBA) || Single component + functionBody += " return texture2D(" + opacityTableMap[0] + + ",\n" + " vec2(scalar.a, grad.w)).a;\n"; + } + else + { + // Dependent compoennts (RGBA) || Single component + functionBody += + " vec4 yscalar = texture3D(in_transfer2DYAxis, g_dataPos);\n" + " yscalar.r = yscalar.r * in_transfer2DYAxis_scale.r + in_transfer2DYAxis_bias.r;\n" + " yscalar = vec4(yscalar.r);\n" + " return texture2D(" + + opacityTableMap[0] + + ",\n" + " vec2(scalar.a, yscalar.w)).a;\n"; + } + } + + resStr = functionSignature + "{\n" + functionBody + "}\n"; + + return resStr; +} + +//----------------------------------------------------------------------- +std::string ComputeOpacityEvaluationCall(vtkOpenGLGPUVolumeRayCastMapper* vtkNotUsed(mapper), + vtkOpenGLGPUVolumeRayCastMapper::VolumeInputMap& inputs, int noOfComponents, + int independentComponents, int useGradYAxis, std::string position) +{ + std::string resStr; + + if (inputs.size() > 1) + { + // Multi Volume + const bool hasGradOp = ::HasGradientOpacity(inputs); + resStr += " opacity = computeOpacity(vec4(scalar), opacityTF);\n"; + // either all volumes have a TF either none have one, so we can have + // the same opacity call for all volumes + if (hasGradOp) + { + resStr += std::string(" gradient = computeGradient(") + position + ", c, volume, index);\n"; + resStr += " opacity *= computeGradientOpacity(gradient, gradTF);\n"; + } + } + else + { + // Single Volume + vtkVolumeProperty* volProp = inputs[0].Volume->GetProperty(); + const bool hasGradOp = volProp->HasGradientOpacity() && !volProp->GetDisableGradientOpacity(); + const bool useLabelGradientOpacity = (volProp->HasLabelGradientOpacity() && + (noOfComponents == 1 || !independentComponents) && !volProp->GetDisableGradientOpacity()); + + const int tfMode = volProp->GetTransferFunctionMode(); + + bool indpComps = (noOfComponents > 1 && independentComponents); + std::string compArgument = (indpComps) ? std::string(", c") : std::string(); + + const bool needGrad = (tfMode == vtkVolumeProperty::TF_2D && useGradYAxis); // to be sure + + if (tfMode == vtkVolumeProperty::TF_1D) + { + + std::string compWeights = indpComps ? std::string(" * in_componentWeight[c]") : std::string(); + + resStr += std::string(" opacity = computeOpacity(vec4(scalar)") + compArgument + + std::string(")") + compWeights + ";\n"; + + if (hasGradOp || useLabelGradientOpacity) + { + resStr += std::string(" gradient = computeGradient(") + position + + std::string(", c, volume, index);\n" + " if(gradient.w >= 0.0) {\n") + + (hasGradOp ? (std::string(" opacity *= computeGradientOpacity(gradient") + + compArgument + ")" + compWeights + ";\n") + : std::string()) + + + (useLabelGradientOpacity + ? (std::string(" opacity *= computeGradientOpacityForLabel(gradient, label);\n")) + : std::string()) + + + std::string(" }\n"); + } + } + else + { + // 2D TF + if (needGrad) + { + resStr += + std::string(" gradient = computeGradient(") + position + ", c, volume, index);\n"; + } + resStr += std::string(" opacity = computeOpacityWithGrad(vec4(scalar), gradient") + + compArgument + std::string(");\n"); + } + } + + return resStr; +} + +//-------------------------------------------------------------------------- +std::string ComputeDensityGradientDeclaration(vtkOpenGLGPUVolumeRayCastMapper* mapper, + vtkOpenGLGPUVolumeRayCastMapper::VolumeInputMap& inputs, int noOfComponents, + int independentComponents, int useGradYAxis) +{ + const bool hasLighting = ::HasLighting(inputs); + const bool hasGradientOp = ::HasGradientOpacity(inputs); + + std::string functionSignature; + + if (inputs.size() > 1) + { + if (hasGradientOp) + { + functionSignature = std::string( + "vec4 computeDensityGradient(in vec3 texPos, in int c, in sampler3D volume, " + "const in sampler2D opacityTF, const in sampler2D gradTF, in int index, float label)\n"); + } + else + { + functionSignature = + std::string("vec4 computeDensityGradient(in vec3 texPos, in int c, in sampler3D volume, " + "const in sampler2D opacityTF, in int index, float label)\n"); + } + } + else + { + functionSignature = std::string("vec4 computeDensityGradient(in vec3 texPos, in int c, in " + "sampler3D volume, in int index, float label)\n"); + } + + std::string shaderStr; + if (hasLighting || hasGradientOp) + { + + std::string opacityTFcall; + std::string gradComput; + // this table remembers the correspondance results <-> texture coordinates + static const std::array, 6> results_texPos = { { + { " g1.x", "texPosPvec[0]" }, + { " g1.y", "texPosPvec[1]" }, + { " g1.z", "texPosPvec[2]" }, + { " g2.x", "texPosNvec[0]" }, + { " g2.y", "texPosNvec[1]" }, + { " g2.z", "texPosNvec[2]" }, + } }; + + shaderStr += std::string("// c is short for component\n") + functionSignature + + std::string("{\n" + " // Approximate Nabla(F) derivatives with central differences.\n" + " vec3 g1; // F_front\n" + " vec3 g2; // F_back\n" + " vec3 xvec = vec3(in_cellStep[index].x, 0.0, 0.0);\n" + " vec3 yvec = vec3(0.0, in_cellStep[index].y, 0.0);\n" + " vec3 zvec = vec3(0.0, 0.0, in_cellStep[index].z);\n" + " vec3 texPosPvec[3];\n" + " texPosPvec[0] = texPos + xvec;\n" + " texPosPvec[1] = texPos + yvec;\n" + " texPosPvec[2] = texPos + zvec;\n" + " vec3 texPosNvec[3];\n" + " texPosNvec[0] = texPos - xvec;\n" + " texPosNvec[1] = texPos - yvec;\n" + " texPosNvec[2] = texPos - zvec;\n" + " float scalar;\n" + " float opacity;\n" + " vec4 gradient;\n" + "\n"); + + for (auto& gradComp : results_texPos) + { + // opacityTFcall corresponds to code snippet used to compute the opacity + opacityTFcall = ComputeOpacityEvaluationCall( + mapper, inputs, noOfComponents, independentComponents, useGradYAxis, gradComp.second); + shaderStr += std::string(" scalar = texture3D(volume,") + gradComp.second + + std::string(")[c];\n" + " scalar = scalar * in_volume_scale[index][c] + in_volume_bias[index][c];\n") + + opacityTFcall + gradComp.first + " = opacity;\n"; + } + + if (::UseClippedVoxelIntensity(inputs) && mapper->GetClippingPlanes()) + { + shaderStr += + std::string(" vec4 g1ObjDataPos[3], g2ObjDataPos[3];\n" + " for (int i = 0; i < 3; ++i)\n" + " {\n" + " g1ObjDataPos[i] = clip_texToObjMat * vec4(texPosPvec[i], 1.0);\n" + " if (g1ObjDataPos[i].w != 0.0)\n" + " {\n" + " g1ObjDataPos[i] /= g1ObjDataPos[i].w;\n" + " }\n" + " g2ObjDataPos[i] = clip_texToObjMat * vec4(texPosNvec[i], 1.0);\n" + " if (g2ObjDataPos[i].w != 0.0)\n" + " {\n" + " g2ObjDataPos[i] /= g2ObjDataPos[i].w;\n" + " }\n" + " }\n" + "\n" + " for (int i = 0; i < clip_numPlanes && !g_skip; i = i + 6)\n" + " {\n" + " vec3 planeOrigin = vec3(in_clippingPlanes[i + 1],\n" + " in_clippingPlanes[i + 2],\n" + " in_clippingPlanes[i + 3]);\n" + " vec3 planeNormal = normalize(vec3(in_clippingPlanes[i + 4],\n" + " in_clippingPlanes[i + 5],\n" + " in_clippingPlanes[i + 6]));\n" + " for (int j = 0; j < 3; ++j)\n" + " {\n" + " if (dot(vec3(planeOrigin - g1ObjDataPos[j].xyz), planeNormal) > 0)\n" + " {\n" + " g1[j] = in_clippedVoxelIntensity;\n" + " }\n" + " if (dot(vec3(planeOrigin - g2ObjDataPos[j].xyz), planeNormal) > 0)\n" + " {\n" + " g2[j] = in_clippedVoxelIntensity;\n" + " }\n" + " }\n" + " }\n" + "\n"); + } + + if (!hasGradientOp) + { + shaderStr += + std::string(" // Central differences: (F_front - F_back) / 2h\n" + " // This version of computeGradient() is only used for lighting\n" + " // calculations (only direction matters), hence the difference is\n" + " // not scaled by 2h and a dummy gradient mag is returned (-1.).\n" + " return vec4((g1 - g2) / in_cellSpacing[index], -1.0);\n" + "}\n"); + } + else + { + shaderStr += std::string( + " // Scale values the actual scalar range.\n" + " float range = in_scalarsRange[4*index+c][1] - in_scalarsRange[4*index+c][0];\n" + " g1 = in_scalarsRange[4*index+c][0] + range * g1;\n" + " g2 = in_scalarsRange[4*index+c][0] + range * g2;\n" + "\n" + " // Central differences: (F_front - F_back) / 2h\n" + " g2 = g1 - g2;\n" + "\n" + " float avgSpacing = (in_cellSpacing[index].x +\n" + " in_cellSpacing[index].y + in_cellSpacing[index].z) / 3.0;\n" + " vec3 aspect = in_cellSpacing[index] * 2.0 / avgSpacing;\n" + " g2 /= aspect;\n" + " float grad_mag = length(g2);\n" + "\n" + " // Handle normalizing with grad_mag == 0.0\n" + " g2 = grad_mag > 0.0 ? normalize(g2) : vec3(0.0);\n" + "\n" + " // Since the actual range of the gradient magnitude is unknown,\n" + " // assume it is in the range [0, 0.25 * dataRange].\n" + " range = range != 0 ? range : 1.0;\n" + " grad_mag = grad_mag / (0.25 * range);\n" + " grad_mag = clamp(grad_mag, 0.0, 1.0);\n" + "\n" + " return vec4(g2.xyz, grad_mag);\n" + "}\n"); + } + } + else + { + shaderStr += functionSignature + + std::string("{\n" + " return vec4(0.0);\n" + "}\n"); + } + + return shaderStr; +} + //-------------------------------------------------------------------------- std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMapper* mapper, vtkVolume* vol, int noOfComponents, int independentComponents, int vtkNotUsed(numberOfLights), int lightingComplexity) { + auto glMapper = vtkOpenGLGPUVolumeRayCastMapper::SafeDownCast(mapper); vtkVolumeProperty* volProperty = vol->GetProperty(); std::string shaderStr = std::string("\ \nvec4 computeLighting(vec4 color, int component, float label)\ - \n {\ - \n vec4 finalColor = vec4(0.0);"); + \n{\ + \n vec4 finalColor = vec4(0.0);\n"); // Shading for composite blending only int const shadeReqd = volProperty->GetShade() && @@ -806,20 +1138,37 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa int const transferMode = volProperty->GetTransferFunctionMode(); - if (shadeReqd || volProperty->HasGradientOpacity() || volProperty->HasLabelGradientOpacity()) + // If shading is required, we compute a shading gradient (used for the shading model) + if (shadeReqd) { - switch (transferMode) + if (glMapper->GetComputeNormalFromOpacity()) + { + // we compute the gradienty according to the volume's opacity ! + shaderStr += + std::string(" vec4 shading_gradient = computeDensityGradient(g_dataPos, component, " + "in_volume[0], 0, label);\n"); + } + else { - case vtkVolumeProperty::TF_1D: - shaderStr += std::string( - " // Compute gradient function only once\n" - " vec4 gradient = computeGradient(g_dataPos, component, in_volume[0], 0);\n"); - break; - case vtkVolumeProperty::TF_2D: - shaderStr += std::string(" // TransferFunction2D is enabled so the gradient for\n" - " // each component has already been cached\n" - " vec4 gradient = g_gradients_0[component];\n"); - break; + // otherwise we take the scalar gradient directly + shaderStr += std::string( + " vec4 shading_gradient = computeGradient(g_dataPos, component, in_volume[0], 0);\n"); + } + } + + // If we need the scalar gradient (typically to sample a transfer function) + if (volProperty->HasGradientOpacity() || volProperty->HasLabelGradientOpacity()) + { + // If we didn't compute it before, we compute it + if (!shadeReqd || glMapper->GetComputeNormalFromOpacity()) + { + shaderStr += + std::string(" vec4 gradient = computeGradient(g_dataPos, component, in_volume[0], 0);\n"); + } + // otherwise, we use what we already computed + else + { + shaderStr += std::string(" vec4 gradient = shading_gradient;\n"); } } @@ -830,7 +1179,7 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa shaderStr += std::string("\ \n vec3 diffuse = vec3(0.0);\ \n vec3 specular = vec3(0.0);\ - \n vec3 normal = gradient.xyz;\ + \n vec3 normal = shading_gradient.xyz;\ \n float normalLength = length(normal);\ \n if (normalLength > 0.0)\ \n {\ @@ -841,10 +1190,6 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n normal = vec3(0.0, 0.0, 0.0);\ \n }\ \n // XXX: normal is oriented inside the volume, so we take -g_ldir/-g_vdir \ - \n /* XXX: so lightingComplexity = 1 means 'only 1 light which is a headlight with intensity = 1.0'\ - \n so two things :\ - \n 1- that's very specific \ - \n 2- I think it implies g_ldir=g_vdir=g_h in every case ? ... maybe ? idk */\ \n float nDotL = dot(normal, -g_ldir[0]);\ \n vec3 r = normalize(2.0 * nDotL * normal + g_ldir[0]);\ \n float vDotR = dot(r, -g_vdir[0]);\ @@ -880,7 +1225,7 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n g_fragWorldPos /= g_fragWorldPos.w;\ \n }\ \n vec3 vdir = normalize(-g_fragWorldPos.xyz);\ - \n vec3 normal = gradient.xyz;\ + \n vec3 normal = shading_gradient.xyz;\ \n vec3 ambient = vec3(0.0);\ \n vec3 diffuse = vec3(0.0);\ \n vec3 specular = vec3(0.0);\ @@ -936,7 +1281,7 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n vec3 diffuse = vec3(0,0,0);\ \n vec3 specular = vec3(0,0,0);\ \n vec3 vertLightDirection;\ - \n vec3 normal = normalize((in_textureToEye[0] * vec4(gradient.xyz, 0.0)).xyz);\ + \n vec3 normal = normalize((in_textureToEye[0] * vec4(shading_gradient.xyz, 0.0)).xyz);\ \n vec3 lightDir;\ \n for (int lightNum = 0; lightNum < in_numberOfLights; lightNum++)\ \n {\ @@ -1006,7 +1351,6 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa shaderStr += std::string("\n finalColor = vec4(color.rgb, 0.0);"); } - auto glMapper = vtkOpenGLGPUVolumeRayCastMapper::SafeDownCast(mapper); // For 1D transfers only (2D transfer functions hold scalar and // gradient-magnitude opacities combined in the same table). // For multiple inputs, a different computeGradientOpacity() signature @@ -1059,24 +1403,24 @@ std::string ComputeLightingMultiDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVol vtkVolume* vol, int noOfComponents, int independentComponents, int vtkNotUsed(numberOfLights), int lightingComplexity) { + auto glMapper = vtkOpenGLGPUVolumeRayCastMapper::SafeDownCast(mapper); vtkVolumeProperty* volProperty = vol->GetProperty(); - std::string shaderStr = std::string(); // if no gradient TF is needed, don't add it into the function signature if (volProperty->HasGradientOpacity()) { shaderStr += std::string("\ - \nvec4 computeLighting(vec3 texPos, vec4 color, const in sampler2D gradientTF, const in sampler3D volume, const int volIdx, int component)\ + \nvec4 computeLighting(vec3 texPos, vec4 color, const in sampler2D gradientTF, const in sampler3D volume, const in sampler2D opacityTF, const int volIdx, int component)\ \n {\ - \n vec4 finalColor = vec4(0.0);"); + \n vec4 finalColor = vec4(0.0);\n"); } else { shaderStr += std::string("\ - \nvec4 computeLighting(vec3 texPos, vec4 color, const in sampler3D volume, const int volIdx, int component)\ + \nvec4 computeLighting(vec3 texPos, vec4 color, const in sampler3D volume, const in sampler2D opacityTF, const int volIdx, int component)\ \n {\ - \n vec4 finalColor = vec4(0.0);"); + \n vec4 finalColor = vec4(0.0);\n"); } // Shading for composite blending only @@ -1086,14 +1430,46 @@ std::string ComputeLightingMultiDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVol int const transferMode = volProperty->GetTransferFunctionMode(); - if (shadeReqd || volProperty->HasGradientOpacity()) + // If shading is required, we compute a shading gradient (used for the shading model) + if (shadeReqd) { /* We compute the gradient every time, because the alternative would be to test whether the volume has gradient cache or not. But as both branches will be evaluated anyway on GPU, we might as well compute the gradient every time. */ - shaderStr += " vec4 gradient = computeGradient(texPos, component, volume, volIdx);\n"; + if (glMapper->GetComputeNormalFromOpacity()) + { + if (volProperty->HasGradientOpacity()) + { + shaderStr += " vec4 shading_gradient = computeDensityGradient(texPos, component, volume, " + "opacityTF, gradientTF, volIdx, 0.0);\n"; + } + else + { + shaderStr += " vec4 shading_gradient = computeDensityGradient(texPos, component, volume, " + "opacityTF, volIdx, 0.0);\n"; + } + } + else + { + shaderStr += + " vec4 shading_gradient = computeGradient(texPos, component, volume, volIdx);\n"; + } + } + + // If we need the scalar gradient (typically to sample a transfer function) + if (volProperty->HasGradientOpacity()) + { + if (!shadeReqd || glMapper->GetComputeNormalFromOpacity()) + { + shaderStr += " vec4 gradient = computeGradient(texPos, component, volume, volIdx);\n"; + } + else + { + // if we already computed it + shaderStr += " vec4 gradient = shading_gradient;\n"; + } } if (shadeReqd && lightingComplexity == 1) @@ -1101,7 +1477,7 @@ std::string ComputeLightingMultiDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVol shaderStr += std::string("\ \n vec3 diffuse = vec3(0.0);\ \n vec3 specular = vec3(0.0);\ - \n vec3 normal = gradient.xyz;\ + \n vec3 normal = shading_gradient.xyz;\ \n float normalLength = length(normal);\ \n if (normalLength > 0.0)\ \n {\ @@ -1112,8 +1488,7 @@ std::string ComputeLightingMultiDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVol \n normal = vec3(0.0, 0.0, 0.0);\ \n }\ \n // normal is oriented inside the volume (because normal = gradient, oriented inside the volume)\ - \n // the we have to take minus everything. very clever\ - \n // it would probably be better to take normal = - gradient, but I'm afraid of breaking things\ + \n // thus we have to take minus everything\ \n float nDotL = dot(normal, -g_ldir[volIdx]);\ \n vec3 r = normalize(2.0 * nDotL * normal + g_ldir[volIdx]);\ \n float vDotR = dot(r, -g_vdir[volIdx]);\ @@ -1304,10 +1679,12 @@ std::string ComputeColorMultiDeclaration( { ss << "vec4 computeColor(vec3 texPos, vec4 scalar, float opacity, const in sampler2D colorTF, " - "const in sampler2D gradientTF, const in sampler3D volume, const int volIdx)\n" + "const in sampler2D gradientTF, const in sampler3D volume, const in sampler2D " + "opacityTF, const int volIdx)\n\n" "{\n" " return clamp(computeLighting(texPos, vec4(texture2D(colorTF,\n" " vec2(scalar.w, 0.0)).xyz, opacity), gradientTF, volume, " + "opacityTF," "volIdx, 0), 0.0, 1.0);\n" "}\n"; } @@ -1315,10 +1692,10 @@ std::string ComputeColorMultiDeclaration( { ss << "vec4 computeColor(vec3 texPos, vec4 scalar, float opacity, const in sampler2D colorTF, " - "const in sampler3D volume, const int volIdx)\n" + "const in sampler3D volume, const in sampler2D opacityTF, const int volIdx)\n\n" "{\n" " return clamp(computeLighting(texPos, vec4(texture2D(colorTF,\n" - " vec2(scalar.w, 0.0)).xyz, opacity), volume, " + " vec2(scalar.w, 0.0)).xyz, opacity), volume, opacityTF," "volIdx, 0), 0.0, 1.0);\n" "}\n"; } @@ -1880,7 +2257,7 @@ std::string ShadingMultipleInputs( " {\n" " g_srcColor = computeColor(texPos, scalar, g_srcColor.a, " << input.RGBTablesMap[0] << ", " << gradientopacity_param << "in_volume[" << i - << "], " << i << ");\n"; + << "], " << input.OpacityTablesMap[0] << ", " << i << ");\n"; if (property->HasGradientOpacity()) { -- GitLab From 20dd079416fb6d0c05168f3836a634f62e9af14e Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Thu, 28 Apr 2022 09:58:02 +0200 Subject: [PATCH 0096/1015] Add test with ComputeNormalFromOpacity in VolumeRendering --- Rendering/Volume/Testing/Cxx/CMakeLists.txt | 1 + ...TestGPURayCastComputeNormalFromOpacity.cxx | 144 ++++++++++++++++++ ...RayCastComputeNormalFromOpacity.png.sha512 | 1 + 3 files changed, 146 insertions(+) create mode 100644 Rendering/Volume/Testing/Cxx/TestGPURayCastComputeNormalFromOpacity.cxx create mode 100644 Rendering/Volume/Testing/Data/Baseline/TestGPURayCastComputeNormalFromOpacity.png.sha512 diff --git a/Rendering/Volume/Testing/Cxx/CMakeLists.txt b/Rendering/Volume/Testing/Cxx/CMakeLists.txt index d51a41486271..83ca8e023ac5 100644 --- a/Rendering/Volume/Testing/Cxx/CMakeLists.txt +++ b/Rendering/Volume/Testing/Cxx/CMakeLists.txt @@ -18,6 +18,7 @@ set (VolumeCxxTests TestGPURayCastCompositeMask.cxx TestGPURayCastCompositeMaskBlend.cxx TestGPURayCastCompositeToMIP.cxx + TestGPURayCastComputeNormalFromOpacity.cxx TestGPURayCastCropping.cxx TestGPURayCastCropping1.cxx TestGPURayCastDataTypesMIP.cxx diff --git a/Rendering/Volume/Testing/Cxx/TestGPURayCastComputeNormalFromOpacity.cxx b/Rendering/Volume/Testing/Cxx/TestGPURayCastComputeNormalFromOpacity.cxx new file mode 100644 index 000000000000..1404ab5e8497 --- /dev/null +++ b/Rendering/Volume/Testing/Cxx/TestGPURayCastComputeNormalFromOpacity.cxx @@ -0,0 +1,144 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestGPURayCastComputeNormalFromOpacity.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ + +#include "vtkCamera.h" +#include "vtkColorTransferFunction.h" +#include "vtkFloatArray.h" +#include "vtkGPUVolumeRayCastMapper.h" +#include "vtkImageData.h" +#include "vtkLight.h" +#include "vtkNew.h" +#include "vtkPiecewiseFunction.h" +#include "vtkPointData.h" +#include "vtkRTAnalyticSource.h" +#include "vtkRenderWindow.h" +#include "vtkRenderWindowInteractor.h" +#include "vtkRenderer.h" +#include "vtkTestErrorObserver.h" +#include "vtkTesting.h" +#include "vtkTimerLog.h" +#include "vtkVolume.h" +#include "vtkVolumeProperty.h" + +int TestGPURayCastComputeNormalFromOpacity(int, char*[]) +{ + // we generate a volumetric sphere + double origin[3] = { 0, 0, 0 }; + double spacing[3] = { 0.005, 0.005, 0.005 }; + int dimension[3] = { 200, 200, 200 }; + + vtkNew sphere; + sphere->SetOrigin(origin); + sphere->SetSpacing(spacing); + sphere->SetDimensions(dimension); + + // the volume has scalar 1 outside the sphere and scalar 0 inside + + vtkNew dataArray; + dataArray->SetNumberOfComponents(1); + dataArray->SetNumberOfTuples(dimension[0] * dimension[1] * dimension[2]); + + for (int i = 0; i < dimension[0]; i++) + { + for (int j = 0; j < dimension[1]; j++) + { + for (int k = 0; k < dimension[2]; k++) + { + int coords2[3]; + coords2[0] = i - dimension[0] / 2; + coords2[1] = j - dimension[1] / 2; + coords2[2] = k - dimension[2] / 2; + int dist2 = coords2[0] * coords2[0] + coords2[1] * coords2[1] + coords2[2] * coords2[2]; + int array_idx = k * dimension[0] * dimension[1] + j * dimension[0] + i; + float val = (dist2 > 0.20 * dimension[0] * dimension[0]) ? 1.0 : 0.0; + dataArray->SetValue(array_idx, val); + } + } + } + + sphere->GetPointData()->SetScalars(dataArray); + + vtkNew errorObserver; + + vtkNew volumeMapper; + volumeMapper->SetAutoAdjustSampleDistances(0); + volumeMapper->SetSampleDistance(spacing[0]); + volumeMapper->SetInputData(sphere); + volumeMapper->SetComputeNormalFromOpacity(true); + volumeMapper->AddObserver(vtkCommand::ErrorEvent, errorObserver); + + vtkNew volumeProperty; + + // opacity TF : decreasing, so that the sphere can appear + vtkNew compositeOpacity; + compositeOpacity->AddPoint(0.0, 1.0); + compositeOpacity->AddPoint(1.0, 0.0); + volumeProperty->SetScalarOpacity(compositeOpacity); + + vtkNew ctf; + ctf->AddRGBPoint(0.0, 0.196, 0.659, 0.337); + ctf->AddRGBPoint(1.0, 0.196, 0.659, 0.337); + volumeProperty->SetColor(ctf); + + volumeProperty->SetDiffuse(1.0); + volumeProperty->SetSpecular(1.0); + volumeProperty->SetShade(1); + volumeProperty->SetScalarOpacityUnitDistance(spacing[0]); + + vtkNew volume; + volume->SetMapper(volumeMapper); + volume->SetProperty(volumeProperty); + + // Create the renderwindow, interactor and renderer + vtkNew renderWindow; + renderWindow->SetSize(401, 399); + vtkNew iren; + iren->SetRenderWindow(renderWindow); + vtkNew renderer; + renderer->SetBackground(0.4, 0.4, 0.4); + renderer->SetTwoSidedLighting(false); + renderWindow->AddRenderer(renderer); + + renderer->ClearLights(); + renderer->RemoveAllLights(); + + double lightPosition[3] = { 2.0, 2.0, 2.0 }; + double lightFocalPoint[3] = { 0.0, 0.0, 0.0 }; + vtkNew light; + light->SetLightTypeToSceneLight(); + light->SetPosition(lightPosition); + light->SetPositional(true); + light->SetConeAngle(60); + light->SetFocalPoint(lightFocalPoint); + light->SetIntensity(1.0); + renderer->AddLight(light); + + double cam_position[3] = { 0.0, 0.0, 3.0 }; + double cam_focal[3] = { 0.5, 0.5, 0.5 }; + double view_up[3] = { 0, 0, 1.0 }; + double cam_parallel_scale = 214; + + vtkCamera* cam = renderer->GetActiveCamera(); + cam->SetPosition(cam_position); + cam->SetFocalPoint(cam_focal); + cam->SetViewUp(view_up); + cam->SetParallelScale(cam_parallel_scale); + + renderer->AddVolume(volume); + renderWindow->Render(); + iren->Start(); + + return 0; +} diff --git a/Rendering/Volume/Testing/Data/Baseline/TestGPURayCastComputeNormalFromOpacity.png.sha512 b/Rendering/Volume/Testing/Data/Baseline/TestGPURayCastComputeNormalFromOpacity.png.sha512 new file mode 100644 index 000000000000..e7d0fbe475fb --- /dev/null +++ b/Rendering/Volume/Testing/Data/Baseline/TestGPURayCastComputeNormalFromOpacity.png.sha512 @@ -0,0 +1 @@ +22c5f22f42607fcee8b7fb99dc71bb03c762cfafc364b70826275657c899511e44e5388456c31d92a862dfd5b7c4134aa220fa52be1d8937d4611dd3334ef8e8 -- GitLab From 96ad8443da0e6e71b5b3fb275927efde7bf631a7 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 5 May 2022 06:26:19 -0400 Subject: [PATCH 0097/1015] Fix vtkLocator backwards compatibility --- .../DataModel/vtkIncrementalOctreePointLocator.h | 2 +- Common/DataModel/vtkLocator.h | 14 ++++++++++---- Common/DataModel/vtkOctreePointLocator.h | 2 +- 3 files changed, 12 insertions(+), 6 deletions(-) diff --git a/Common/DataModel/vtkIncrementalOctreePointLocator.h b/Common/DataModel/vtkIncrementalOctreePointLocator.h index 5cc52daae830..c47af53d5356 100644 --- a/Common/DataModel/vtkIncrementalOctreePointLocator.h +++ b/Common/DataModel/vtkIncrementalOctreePointLocator.h @@ -165,7 +165,7 @@ public: /** * Load points from a dataset to construct an octree for point location. * This function resorts to InitPointInsertion() to fulfill some of the work. - * This will NOT do anything if StaticDataSet is on. + * This will NOT do anything if UseExistingSearchStructure is on. */ void BuildLocator() override; diff --git a/Common/DataModel/vtkLocator.h b/Common/DataModel/vtkLocator.h index 460fd7e280b7..be6200d1cf0c 100644 --- a/Common/DataModel/vtkLocator.h +++ b/Common/DataModel/vtkLocator.h @@ -154,14 +154,17 @@ public: virtual void Initialize(); /** - * Build the locator from the input dataset. This will NOT do anything if StaticDataSet is on. + * Build the locator from the input dataset. This will NOT do anything if + * UseExistingSearchStructure is on. */ virtual void BuildLocator() = 0; /** - * Build the locator from the input dataset (even if StaticDataSet is on). + * Build the locator from the input dataset (even if UseExistingSearchStructure is on). + * + * This function is not pure virtual to maintain backwards compatibility. */ - virtual void ForceBuildLocator() = 0; + virtual void ForceBuildLocator() {} /** * Free the memory required for the spatial data structure. @@ -194,7 +197,10 @@ protected: vtkLocator(); ~vtkLocator() override; - virtual void BuildLocatorInternal() = 0; + /** + * This function is not pure virtual to maintain backwards compatibility. + */ + virtual void BuildLocatorInternal(){}; vtkDataSet* DataSet; vtkTypeBool UseExistingSearchStructure; diff --git a/Common/DataModel/vtkOctreePointLocator.h b/Common/DataModel/vtkOctreePointLocator.h index 6816bc4e8523..86267110623c 100644 --- a/Common/DataModel/vtkOctreePointLocator.h +++ b/Common/DataModel/vtkOctreePointLocator.h @@ -117,7 +117,7 @@ public: * or data sets. Cells are assigned to octree spatial regions * based on the location of their centroids. * - * This will NOT do anything if StaticDataSet is on. + * This will NOT do anything if UseExistingSearchStructure is on. */ void BuildLocator() override; -- GitLab From 4ccbbb4cc2b7896d5992cd6868d702ae4301fbca Mon Sep 17 00:00:00 2001 From: Will Schroeder Date: Thu, 5 May 2022 08:00:05 -0400 Subject: [PATCH 0098/1015] Triangulation tolerance tightened to minimize tessellation failures --- Filters/Core/vtkTriangleFilter.cxx | 28 ++++++++++++---------------- 1 file changed, 12 insertions(+), 16 deletions(-) diff --git a/Filters/Core/vtkTriangleFilter.cxx b/Filters/Core/vtkTriangleFilter.cxx index e59a6b1808b0..2966ff44d2bd 100644 --- a/Filters/Core/vtkTriangleFilter.cxx +++ b/Filters/Core/vtkTriangleFilter.cxx @@ -26,6 +26,7 @@ vtkStandardNewMacro(vtkTriangleFilter); +//------------------------------------------------------------------------- int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), vtkInformationVector** inputVector, vtkInformationVector* outputVector) { @@ -61,7 +62,7 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), if (this->PassVerts) { newId = output->GetNumberOfCells(); - newCells = vtkCellArray::New(); + vtkNew newCells; newCells->AllocateCopy(cells); for (cells->InitTraversal(); cells->GetNextCell(npts, pts) && !abort; cellNum++) { @@ -85,7 +86,6 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), } } output->SetVerts(newCells); - newCells->Delete(); } else { @@ -100,7 +100,7 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), if (this->PassLines) { newId = output->GetNumberOfCells(); - newCells = vtkCellArray::New(); + vtkNew newCells; newCells->AllocateCopy(cells); for (cells->InitTraversal(); cells->GetNextCell(npts, pts) && !abort; cellNum++) { @@ -124,7 +124,6 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), } } // for all lines output->SetLines(newCells); - newCells->Delete(); } else { @@ -132,18 +131,21 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), } } - vtkCellArray* newPolys = nullptr; + // Output from polygons and triangle strips cell arrays are placed + // in newPolys. + vtkSmartPointer newPolys; if (!abort && input->GetPolys()->GetNumberOfCells() > 0) { cells = input->GetPolys(); newId = output->GetNumberOfCells(); - newPolys = vtkCellArray::New(); + newPolys = vtkSmartPointer::New(); newPolys->AllocateCopy(cells); output->SetPolys(newPolys); - vtkIdList* ptIds = vtkIdList::New(); + vtkNew ptIds; ptIds->Allocate(VTK_CELL_SIZE); int numSimplices; - vtkPolygon* poly = vtkPolygon::New(); + vtkNew poly; + poly->SetTolerance(1.0e-08); // Tighten tessellation tolerance vtkIdType triPts[3]; for (cells->InitTraversal(); cells->GetNextCell(npts, pts) && !abort; cellNum++) @@ -186,8 +188,6 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), } // for each simplex } // triangulate polygon } - ptIds->Delete(); - poly->Delete(); } // strips @@ -197,7 +197,7 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), newId = output->GetNumberOfCells(); if (newPolys == nullptr) { - newPolys = vtkCellArray::New(); + newPolys = vtkSmartPointer::New(); newPolys->AllocateCopy(cells); output->SetPolys(newPolys); } @@ -216,11 +216,6 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), } // for all strips } - if (newPolys != nullptr) - { - newPolys->Delete(); - } - // Update output output->SetPoints(input->GetPoints()); output->GetPointData()->PassData(input->GetPointData()); @@ -232,6 +227,7 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), return 1; } +//------------------------------------------------------------------------- void vtkTriangleFilter::PrintSelf(ostream& os, vtkIndent indent) { this->Superclass::PrintSelf(os, indent); -- GitLab From a485cd2cbd6022139ec9c1700877637d13ac714d Mon Sep 17 00:00:00 2001 From: Utkarsh Ayachit Date: Tue, 21 Dec 2021 10:32:28 -0500 Subject: [PATCH 0099/1015] vtkIOSSWriter: a new writer to write exodus files Introducing a new writer to write Exodus files using IOSS. While this just an initial version and may now work in all cases, it will eventually replace the `vtkExodusIIWriter`. --- Documentation/release/dev/ioss-writer.md | 6 + IO/IOSS/CMakeLists.txt | 6 +- IO/IOSS/Testing/Cxx/CMakeLists.txt | 2 + IO/IOSS/Testing/Cxx/TestIOSSExodusWriter.cxx | 110 ++ .../Cxx/TestIOSSExodusWriterCrinkleClip.cxx | 125 +++ .../Baseline/TestIOSSExodusWriter.png.sha512 | 1 + ...TestIOSSExodusWriterCrinkleClip.png.sha512 | 1 + IO/IOSS/vtk.module | 1 + IO/IOSS/vtkIOSSModel.cxx | 974 ++++++++++++++++++ IO/IOSS/vtkIOSSModel.h | 67 ++ IO/IOSS/vtkIOSSUtilities.cxx | 108 ++ IO/IOSS/vtkIOSSUtilities.h | 14 + IO/IOSS/vtkIOSSWriter.cxx | 286 +++++ IO/IOSS/vtkIOSSWriter.h | 145 +++ 14 files changed, 1844 insertions(+), 2 deletions(-) create mode 100644 Documentation/release/dev/ioss-writer.md create mode 100644 IO/IOSS/Testing/Cxx/TestIOSSExodusWriter.cxx create mode 100644 IO/IOSS/Testing/Cxx/TestIOSSExodusWriterCrinkleClip.cxx create mode 100644 IO/IOSS/Testing/Data/Baseline/TestIOSSExodusWriter.png.sha512 create mode 100644 IO/IOSS/Testing/Data/Baseline/TestIOSSExodusWriterCrinkleClip.png.sha512 create mode 100644 IO/IOSS/vtkIOSSModel.cxx create mode 100644 IO/IOSS/vtkIOSSModel.h create mode 100644 IO/IOSS/vtkIOSSWriter.cxx create mode 100644 IO/IOSS/vtkIOSSWriter.h diff --git a/Documentation/release/dev/ioss-writer.md b/Documentation/release/dev/ioss-writer.md new file mode 100644 index 000000000000..0357849ae16a --- /dev/null +++ b/Documentation/release/dev/ioss-writer.md @@ -0,0 +1,6 @@ +## IOSS writer for writing Exodus files + +`vtkIOSSWriter` is a new writer that can be used to write Exodus files using the +IOSS library. This is an initial version of the writer and only supports +element blocks, node sets, and side sets. Further updates will continue to make +this writer more robust and feature complete. diff --git a/IO/IOSS/CMakeLists.txt b/IO/IOSS/CMakeLists.txt index e089378506e9..bb22bda02d88 100644 --- a/IO/IOSS/CMakeLists.txt +++ b/IO/IOSS/CMakeLists.txt @@ -1,9 +1,11 @@ set(classes - vtkIOSSReader) + vtkIOSSReader + vtkIOSSWriter) set(private_classes vtkIOSSFilesScanner - vtkIOSSUtilities) + vtkIOSSUtilities + vtkIOSSModel) vtk_module_add_module(VTK::IOIOSS CLASSES ${classes} diff --git a/IO/IOSS/Testing/Cxx/CMakeLists.txt b/IO/IOSS/Testing/Cxx/CMakeLists.txt index 35c8d74f968a..0828c8d69236 100644 --- a/IO/IOSS/Testing/Cxx/CMakeLists.txt +++ b/IO/IOSS/Testing/Cxx/CMakeLists.txt @@ -6,6 +6,8 @@ vtk_add_test_cxx(vtkIOIOSSCxxTests tests TestIOSSExodus.cxx,NO_VALID TestIOSSExodusRestarts.cxx,NO_VALID TestIOSSExodusSetArrays.cxx + TestIOSSExodusWriterCrinkleClip.cxx + TestIOSSExodusWriter.cxx TestIOSSFilePatternMatching.cxx,NO_VALID TestIOSSNoElementBlocks.cxx,NO_VALID TestIOSSTri6.cxx diff --git a/IO/IOSS/Testing/Cxx/TestIOSSExodusWriter.cxx b/IO/IOSS/Testing/Cxx/TestIOSSExodusWriter.cxx new file mode 100644 index 000000000000..957ddd1e20a7 --- /dev/null +++ b/IO/IOSS/Testing/Cxx/TestIOSSExodusWriter.cxx @@ -0,0 +1,110 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestIOSSExodusWriter.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +static std::string GetFileName(int argc, char* argv[], const std::string& fnameC) +{ + char* fileNameC = vtkTestUtilities::ExpandDataFileName(argc, argv, fnameC.c_str()); + std::string fname(fileNameC); + delete[] fileNameC; + return fname; +} + +static std::string GetOutputFileName(int argc, char* argv[], const std::string& suffix) +{ + vtkNew testing; + testing->AddArguments(argc, argv); + auto* tempDir = testing->GetTempDirectory(); + if (!tempDir) + { + vtkLogF(ERROR, "No output directory specified!"); + return {}; + } + + return std::string(tempDir) + "/" + suffix; +} + +int TestIOSSExodusWriter(int argc, char* argv[]) +{ + auto ofname = GetOutputFileName(argc, argv, "test_ioss_exodus_writer.ex2"); + if (ofname.empty()) + { + return EXIT_FAILURE; + } + + // Write data + vtkNew reader0; + auto fname = GetFileName(argc, argv, std::string("Data/Exodus/can.e.4/can.e.4.0")); + reader0->SetFileName(fname.c_str()); + reader0->UpdateInformation(); + reader0->GetElementBlockSelection()->EnableAllArrays(); + reader0->GetNodeSetSelection()->EnableAllArrays(); + reader0->GetSideSetSelection()->EnableAllArrays(); + + vtkNew writer; + writer->SetFileName(ofname.c_str()); + writer->SetInputConnection(reader0->GetOutputPort()); + writer->Write(); + + // Open the saved file and render it. + vtkNew reader; + reader->SetFileName(ofname.c_str()); + reader->GetElementBlockSelection()->EnableAllArrays(); + reader->GetNodeSetSelection()->EnableAllArrays(); + reader->GetSideSetSelection()->EnableAllArrays(); + + vtkNew surface; + vtkNew mapper; + vtkNew actor; + vtkNew renWin; + vtkNew ren; + vtkNew iren; + + surface->SetInputConnection(reader->GetOutputPort()); + mapper->SetInputConnection(surface->GetOutputPort()); + actor->SetMapper(mapper); + renWin->AddRenderer(ren); + iren->SetRenderWindow(renWin); + + ren->AddActor(actor); + renWin->SetSize(300, 300); + auto cam = ren->GetActiveCamera(); + cam->SetPosition(10., 10., 5.); + cam->SetViewUp(0., 0.4, 1.); + ren->ResetCamera(); + renWin->Render(); + + int retVal = vtkRegressionTestImage(renWin); + if (retVal == vtkRegressionTester::DO_INTERACTOR) + { + iren->Start(); + } + + return !retVal; +} diff --git a/IO/IOSS/Testing/Cxx/TestIOSSExodusWriterCrinkleClip.cxx b/IO/IOSS/Testing/Cxx/TestIOSSExodusWriterCrinkleClip.cxx new file mode 100644 index 000000000000..2ed60f1d3494 --- /dev/null +++ b/IO/IOSS/Testing/Cxx/TestIOSSExodusWriterCrinkleClip.cxx @@ -0,0 +1,125 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestIOSSExodusWriterCrinkleClip.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/** + * This test tests that vtkIOSSWriter can detect and create restarts when input + * mesh changes. + */ +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +static std::string GetFileName(int argc, char* argv[], const std::string& fnameC) +{ + char* fileNameC = vtkTestUtilities::ExpandDataFileName(argc, argv, fnameC.c_str()); + std::string fname(fileNameC); + delete[] fileNameC; + return fname; +} + +static std::string GetOutputFileName(int argc, char* argv[], const std::string& suffix) +{ + vtkNew testing; + testing->AddArguments(argc, argv); + auto* tempDir = testing->GetTempDirectory(); + if (!tempDir) + { + vtkLogF(ERROR, "No output directory specified!"); + return {}; + } + + return std::string(tempDir) + "/" + suffix; +} + +int TestIOSSExodusWriterCrinkleClip(int argc, char* argv[]) +{ + auto ofname = GetOutputFileName(argc, argv, "test_ioss_exodus_writer_crinkle_clip.ex2"); + if (ofname.empty()) + { + return EXIT_FAILURE; + } + + // Write data + vtkNew reader0; + auto fname = GetFileName(argc, argv, std::string("Data/Exodus/can.e.4/can.e.4.0")); + reader0->SetFileName(fname.c_str()); + reader0->UpdateInformation(); + reader0->GetElementBlockSelection()->EnableAllArrays(); + reader0->GetNodeSetSelection()->EnableAllArrays(); + reader0->GetSideSetSelection()->EnableAllArrays(); + + vtkNew plane; + plane->SetNormal(1, 1, 1); + + vtkNew clipper; + clipper->SetImplicitFunction(plane); + clipper->SetInputConnection(reader0->GetOutputPort()); + + vtkNew writer; + writer->SetFileName(ofname.c_str()); + writer->SetInputConnection(clipper->GetOutputPort()); + writer->Write(); + + // Open the saved file and render it. + vtkNew reader; + reader->SetFileName(ofname.c_str()); + reader->GetElementBlockSelection()->EnableAllArrays(); + reader->GetNodeSetSelection()->EnableAllArrays(); + reader->GetSideSetSelection()->EnableAllArrays(); + reader->UpdateInformation(); + reader->UpdateTimeStep(0.00100001); + + vtkNew surface; + vtkNew mapper; + vtkNew actor; + vtkNew renWin; + vtkNew ren; + vtkNew iren; + + surface->SetInputDataObject(reader->GetOutputDataObject(0)); + mapper->SetInputConnection(surface->GetOutputPort()); + actor->SetMapper(mapper); + renWin->AddRenderer(ren); + iren->SetRenderWindow(renWin); + + ren->AddActor(actor); + renWin->SetSize(300, 300); + auto cam = ren->GetActiveCamera(); + cam->SetPosition(10., 10., 5.); + cam->SetViewUp(0., 0.4, 1.); + ren->ResetCamera(); + renWin->Render(); + + int retVal = vtkRegressionTestImage(renWin); + if (retVal == vtkRegressionTester::DO_INTERACTOR) + { + iren->Start(); + } + + return !retVal; +} diff --git a/IO/IOSS/Testing/Data/Baseline/TestIOSSExodusWriter.png.sha512 b/IO/IOSS/Testing/Data/Baseline/TestIOSSExodusWriter.png.sha512 new file mode 100644 index 000000000000..feae876085b5 --- /dev/null +++ b/IO/IOSS/Testing/Data/Baseline/TestIOSSExodusWriter.png.sha512 @@ -0,0 +1 @@ +062527cfcde685da5ec1b49ea1508e6078cd78e137e81c76da415c1aadefb00d40612429220e28b9b31018c0e99476403f8532524c51d21ae678394eb54337c5 diff --git a/IO/IOSS/Testing/Data/Baseline/TestIOSSExodusWriterCrinkleClip.png.sha512 b/IO/IOSS/Testing/Data/Baseline/TestIOSSExodusWriterCrinkleClip.png.sha512 new file mode 100644 index 000000000000..4e2cb9947d13 --- /dev/null +++ b/IO/IOSS/Testing/Data/Baseline/TestIOSSExodusWriterCrinkleClip.png.sha512 @@ -0,0 +1 @@ +3223283f4e37fc1cfad9f4b443ac6e57d0454d64b56a6e49cd9aef896b71fdeb249181d1ebbd39dadacc3613254f4a6772e1046c58c91d4eeb91a8a8d8ad130a diff --git a/IO/IOSS/vtk.module b/IO/IOSS/vtk.module index 1ff8a867c03a..edaf0bb978c3 100644 --- a/IO/IOSS/vtk.module +++ b/IO/IOSS/vtk.module @@ -13,6 +13,7 @@ DEPENDS PRIVATE_DEPENDS VTK::FiltersCore VTK::FiltersExtraction + VTK::fmt VTK::ioss OPTIONAL_DEPENDS VTK::ParallelMPI diff --git a/IO/IOSS/vtkIOSSModel.cxx b/IO/IOSS/vtkIOSSModel.cxx new file mode 100644 index 000000000000..1d495dee938f --- /dev/null +++ b/IO/IOSS/vtkIOSSModel.cxx @@ -0,0 +1,974 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkIOSSModel.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +#include "vtkIOSSModel.h" + +#include "vtkArrayDispatch.h" +#include "vtkCellData.h" +#include "vtkDataArrayRange.h" +#include "vtkDataAssembly.h" +#include "vtkDummyController.h" +#include "vtkIOSSUtilities.h" +#include "vtkIOSSWriter.h" +#include "vtkIdTypeArray.h" +#include "vtkInformation.h" +#include "vtkMultiProcessController.h" +#include "vtkObjectFactory.h" +#include "vtkPartitionedDataSet.h" +#include "vtkPartitionedDataSetCollection.h" +#include "vtkPointData.h" +#include "vtkSMPTools.h" +#include "vtkSmartPointer.h" +#include "vtkUnsignedCharArray.h" +#include "vtkUnstructuredGrid.h" + +#include + +// Ioss includes +#include +// clang-format off +#include VTK_IOSS(Ioss_Assembly.h) +#include VTK_IOSS(Ioss_DatabaseIO.h) +#include VTK_IOSS(Ioss_EdgeBlock.h) +#include VTK_IOSS(Ioss_EdgeSet.h) +#include VTK_IOSS(Ioss_ElementBlock.h) +#include VTK_IOSS(Ioss_ElementSet.h) +#include VTK_IOSS(Ioss_ElementTopology.h) +#include VTK_IOSS(Ioss_FaceBlock.h) +#include VTK_IOSS(Ioss_FaceSet.h) +#include VTK_IOSS(Ioss_IOFactory.h) +#include VTK_IOSS(Ioss_NodeBlock.h) +#include VTK_IOSS(Ioss_NodeSet.h) +#include VTK_IOSS(Ioss_Region.h) +#include VTK_IOSS(Ioss_SideBlock.h) +#include VTK_IOSS(Ioss_SideSet.h) +#include VTK_IOSS(Ioss_StructuredBlock.h) +// clang-format on + +#include +#include +#include + +namespace +{ +std::set GetDatasetIndices(vtkDataAssembly* assembly, const char* name) +{ + if (assembly && assembly->GetRootNodeName() && strcmp(assembly->GetRootNodeName(), "IOSS") == 0) + { + const auto idx = assembly->FindFirstNodeWithName(name); + if (idx != -1) + { + const auto vector = assembly->GetDataSetIndices(assembly->FindFirstNodeWithName(name)); + return std::set{ vector.begin(), vector.end() }; + } + } + return {}; +} + +std::map GetElementCounts( + vtkPartitionedDataSet* pd, vtkMultiProcessController* controller) +{ + std::set cellTypes; + auto datasets = vtkCompositeDataSet::GetDataSets(pd); + for (auto& ug : datasets) + { + auto* distinctCellTypes = ug->GetDistinctCellTypesArray(); + auto range = vtk::DataArrayValueRange(distinctCellTypes); + std::copy(range.begin(), range.end(), std::inserter(cellTypes, cellTypes.end())); + } + + // now reduce this across all ranks as well. + if (controller->GetNumberOfProcesses() > 1) + { + vtkNew source; + source->SetNumberOfTuples(cellTypes.size()); + std::copy(cellTypes.begin(), cellTypes.end(), source->GetPointer(0)); + + vtkNew result; + controller->AllGatherV(source, result); + + auto range = vtk::DataArrayValueRange(result); + std::copy(range.begin(), range.end(), std::inserter(cellTypes, cellTypes.end())); + } + + // compute element counts + std::map> elementCounts; + for (auto& type : cellTypes) + { + elementCounts[type] = 0; + } + + for (auto& ug : datasets) + { + vtkSMPTools::For(0, ug->GetNumberOfCells(), [&](vtkIdType start, vtkIdType end) { + for (vtkIdType cc = start; cc < end; ++cc) + { + ++elementCounts[static_cast(ug->GetCellType(cc))]; + } + }); + } + + return { elementCounts.begin(), elementCounts.end() }; +} + +Ioss::Field::BasicType GetFieldType(vtkDataArray* array) +{ + if (array->GetDataType() == VTK_DOUBLE || array->GetDataType() == VTK_FLOAT) + { + return Ioss::Field::DOUBLE; + } + else if (array->GetDataTypeSize() <= 32) + { + return Ioss::Field::INT32; + } + else + { + return Ioss::Field::INT64; + } +} + +std::vector> GetFields( + int association, vtkCompositeDataSet* pdc, vtkMultiProcessController* vtkNotUsed(controller)) +{ + std::vector> fields; + vtkDataSetAttributesFieldList fieldList; + for (auto& ds : vtkCompositeDataSet::GetDataSets(pdc)) + { + fieldList.IntersectFieldList(ds->GetAttributes(association)); + } + + vtkNew tmp; + tmp->CopyAllocate(fieldList, 0); + for (int idx = 0, max = tmp->GetNumberOfArrays(); idx < max; ++idx) + { + if (auto* array = tmp->GetArray(idx)) + { + if (array == tmp->GetGlobalIds()) + { + // we don't want to add global ids again. + continue; + } + if (strcmp(array->GetName(), "object_id") == 0) + { + // skip "object_id". that's an array added by Ioss reader. + continue; + } + const auto type = ::GetFieldType(array); + fields.emplace_back(array->GetName(), type, array->GetNumberOfComponents()); + } + } + + // TODO: reduce in parallel; for non IOSS input, we'll need to explicitly + // ensure all blocks have same fields across all ranks. + return fields; +} + +template +struct PutFieldWorker +{ + std::vector> Data; + size_t Offset{ 0 }; + const std::vector* SourceIds = nullptr; + PutFieldWorker(int numComponents, size_t targetSize) + : Data(numComponents) + { + for (int cc = 0; cc < numComponents; ++cc) + { + this->Data[cc].resize(targetSize); + } + } + + void SetSourceIds(const std::vector* ids) { this->SourceIds = ids; } + + template + void operator()(ArrayType* array) + { + using SourceT = vtk::GetAPIType; + vtkSMPTools::For(0, this->SourceIds->size(), [&](vtkIdType start, vtkIdType end) { + SourceT* tuple = new SourceT[this->Data.size()]; + for (vtkIdType cc = start; cc < end; ++cc) + { + array->GetTypedTuple((*this->SourceIds)[cc], tuple); + for (size_t comp = 0; comp < this->Data.size(); ++comp) + { + this->Data[comp][this->Offset + cc] = tuple[comp]; + } + } + delete[] tuple; + }); + + this->Offset += this->SourceIds->size(); + } +}; + +template +struct DisplacementWorker +{ + std::vector>& Data; + size_t Offset{ 0 }; + double Magnitude; + const std::vector* SourceIds = nullptr; + DisplacementWorker(std::vector>& data, double magnitude) + : Data(data) + , Magnitude(magnitude) + { + } + + void SetSourceIds(const std::vector* ids) { this->SourceIds = ids; } + + template + void operator()(ArrayType* array) + { + using SourceT = vtk::GetAPIType; + vtkSMPTools::For(0, this->SourceIds->size(), [&](vtkIdType start, vtkIdType end) { + SourceT* displ = new SourceT[this->Data.size()]; + for (vtkIdType cc = start; cc < end; ++cc) + { + array->GetTypedTuple((*this->SourceIds)[cc], displ); + for (size_t comp = 0; comp < this->Data.size(); ++comp) + { + this->Data[comp][this->Offset + cc] -= (displ[comp] * this->Magnitude); + } + } + delete[] displ; + }); + + this->Offset += this->SourceIds->size(); + } +}; + +struct vtkGroupingEntity +{ + vtkIOSSWriter* Writer = nullptr; + vtkGroupingEntity(vtkIOSSWriter* writer) + : Writer(writer) + { + } + virtual ~vtkGroupingEntity() = default; + virtual void Define(Ioss::Region& region) const = 0; + virtual void Model(Ioss::Region& region) const = 0; + virtual void DefineTransient(Ioss::Region& region) const = 0; + virtual void Transient(Ioss::Region& region) const = 0; + virtual void AppendMD5(vtksysMD5* md5) const = 0; + +protected: + template + void PutFields(IossGroupingEntityT* block, + const std::vector>& fields, + const std::vector>& lIds, const std::vector& datasets, + int association) const + { + for (const auto& field : fields) + { + switch (std::get<1>(field)) + { + case Ioss::Field::DOUBLE: + this->PutField( + block, std::get<0>(field), std::get<2>(field), lIds, datasets, association); + break; + + case Ioss::Field::INT32: + this->PutField( + block, std::get<0>(field), std::get<2>(field), lIds, datasets, association); + break; + + case Ioss::Field::INT64: + this->PutField( + block, std::get<0>(field), std::get<2>(field), lIds, datasets, association); + break; + + default: + vtkLogF(TRACE, "Unsupported field type. Skipping %s", std::get<0>(field).c_str()); + break; + } + } + } + + template + void PutField(IossGroupingEntityT* block, const std::string& name, int numComponents, + const std::vector>& lIds, const std::vector& datasets, + int association) const + { + assert(datasets.size() == lIds.size()); + const size_t totalSize = std::accumulate(lIds.begin(), lIds.end(), static_cast(0), + [](size_t sum, const std::vector& ids) { return sum + ids.size(); }); + + using Dispatcher = vtkArrayDispatch::DispatchByValueType; + PutFieldWorker worker(numComponents, totalSize); + for (size_t dsIndex = 0; dsIndex < datasets.size(); ++dsIndex) + { + auto& ds = datasets[dsIndex]; + auto& lids = lIds[dsIndex]; + worker.SetSourceIds(&lids); + Dispatcher::Execute(ds->GetAttributes(association)->GetArray(name.c_str()), worker); + } + + for (int comp = 0; comp < numComponents; ++comp) + { + const auto fieldName = numComponents == 1 ? name : name + std::to_string(comp + 1); + block->put_field_data(fieldName, worker.Data[comp]); + } + } + + void DefineFields(Ioss::GroupingEntity* block, + const std::vector>& fields, + Ioss::Field::RoleType role, int64_t elementCount) const + { + for (const auto& field : fields) + { + if (std::get<2>(field) == 1) + { + block->field_add( + Ioss::Field(std::get<0>(field), std::get<1>(field), "scalar", role, elementCount)); + } + else + { + for (int comp = 0; comp < std::get<2>(field); ++comp) + { + block->field_add(Ioss::Field(std::get<0>(field) + std::to_string(comp + 1), + std::get<1>(field), "scalar", role, elementCount)); + } + } + } + } +}; + +} // end namespace {} + +/** + * Builds an Ioss::NodeBlock. Since an exodus file has a single common node + * block, we need to build one based on all points from all blocks. + * + * Another thing to handle is displacements. If input dataset is coming from + * IOSS reader, the point coordinates may have been displaced using the + * displacement vectors in the dataset. + */ +struct vtkNodeBlock : vtkGroupingEntity +{ + const std::vector DataSets; + const std::string Name; + + // build a map of ds idx, gid, and lid and use that later. + std::vector Ids; + std::vector> IdsRaw; + + std::vector> Fields; + + vtkNodeBlock(vtkPartitionedDataSetCollection* pdc, const std::string& name, + vtkMultiProcessController* controller, vtkIOSSWriter* writer) + : vtkGroupingEntity(writer) + , DataSets{ vtkCompositeDataSet::GetDataSets(pdc) } + , Name(name) + { + this->IdsRaw.reserve(this->DataSets.size()); + + std::set id_set; + for (auto& ds : this->DataSets) + { + auto* pd = ds->GetPointData(); + auto* gids = vtkIdTypeArray::SafeDownCast(pd->GetGlobalIds()); + if (!gids) + { + throw std::runtime_error("point global ids missing."); + } + + const auto numPoints = ds->GetNumberOfPoints(); + assert(gids->GetNumberOfTuples() == numPoints); + + this->Ids.reserve(this->Ids.size() + numPoints); + this->IdsRaw.emplace_back(); + this->IdsRaw.back().reserve(numPoints); + const vtkIdType gidOffset = writer->GetOffsetGlobalIds() ? 1 : 0; + for (vtkIdType cc = 0; cc < numPoints; ++cc) + { + const auto gid = gids->GetValue(cc); + if (id_set.insert(gid).second) + { + this->Ids.push_back(gid + gidOffset); + this->IdsRaw.back().push_back(cc); + } + } + } + + assert(this->DataSets.size() == this->IdsRaw.size()); + this->Fields = ::GetFields(vtkDataObject::POINT, pdc, controller); + } + + void AppendMD5(vtksysMD5* md5) const override + { + vtksysMD5_Append(md5, reinterpret_cast(&this->Ids[0]), + static_cast(sizeof(int32_t) * this->Ids.size())); + } + + void Define(Ioss::Region& region) const override + { + auto* block = new Ioss::NodeBlock(region.get_database(), this->Name, this->Ids.size(), 3); + // block->property_add(Ioss::Property("id", 1)); // block id. + region.add(block); + } + + void DefineTransient(Ioss::Region& region) const override + { + auto* block = region.get_node_block(this->Name); + this->DefineFields(block, this->Fields, Ioss::Field::TRANSIENT, this->Ids.size()); + } + + void Model(Ioss::Region& region) const override + { + auto* block = region.get_node_block(this->Name); + block->put_field_data("ids", this->Ids); + + // add mesh coordinates + using Dispatcher = vtkArrayDispatch::DispatchByValueType; + PutFieldWorker worker(3, this->Ids.size()); + for (size_t dsIndex = 0; dsIndex < this->DataSets.size(); ++dsIndex) + { + auto& ds = this->DataSets[dsIndex]; + auto& lids = this->IdsRaw[dsIndex]; + worker.SetSourceIds(&lids); + Dispatcher::Execute(ds->GetPoints()->GetData(), worker); + } + + // if displacement array is present, offset the mesh coordinates by the + // provided displacement. + const auto displMagnitude = + this->DataSets.empty() ? 0.0 : this->Writer->GetDisplacementMagnitude(); + const std::string displName = + displMagnitude > 0 ? vtkIOSSUtilities::GetDisplacementFieldName(this->DataSets.front()) : ""; + if (!displName.empty() && displMagnitude > 0.0) + { + DisplacementWorker dworker(worker.Data, displMagnitude); + for (size_t dsIndex = 0; dsIndex < this->DataSets.size(); ++dsIndex) + { + auto& ds = this->DataSets[dsIndex]; + auto& lids = this->IdsRaw[dsIndex]; + dworker.SetSourceIds(&lids); + Dispatcher::Execute(ds->GetPointData()->GetArray(displName.c_str()), dworker); + } + } + + block->put_field_data("mesh_model_coordinates_x", worker.Data[0]); + block->put_field_data("mesh_model_coordinates_y", worker.Data[1]); + block->put_field_data("mesh_model_coordinates_z", worker.Data[2]); + } + + void Transient(Ioss::Region& region) const override + { + auto* block = region.get_node_block(this->Name); + this->PutFields(block, this->Fields, this->IdsRaw, this->DataSets, vtkDataObject::POINT); + } +}; + +/** + * Builds a Ioss::ElementBlock from a vtkPartitionedDataSet. The differences + * between the Ioss and VTK data model for the two are handled as follows: + * + * * We only support vtkPartitionedDataSet comprising of one or more vtkUnstructuredGrids. + * All other dataset types are simply ignored. + * + * * An ElementBlock cannot have multiple "pieces" in the same file. So if a + * vtkPartitionedDataSet has multiple datasets, we need to "combine" them into + * one. + * + * * An ElementBlock cannot have elements of different types. However, + * vtkUnstructuredGrid supports heterogeneous cells. So if all + * vtkUnstructuredGrids in the vtkPartitionedDataSet have more than 1 cell type, + * we create multiple element blocks. Each ElementBlock is uniquely named by + * using the given block name and the element type as a suffix. + * + * In MPI world, the cell types are gathered across all ranks to ensure each + * ranks creates identical blocks / block names. + * + */ +struct vtkElementBlock : public vtkGroupingEntity +{ + vtkPartitionedDataSet* PartitionedDataSet; + std::string RootName; + std::map ElementCounts; + std::vector> Fields; + + vtkElementBlock(vtkPartitionedDataSet* pd, const std::string& name, + vtkMultiProcessController* controller, vtkIOSSWriter* writer) + : vtkGroupingEntity(writer) + , PartitionedDataSet(pd) + , RootName{ name } + { + auto datasets = vtkCompositeDataSet::GetDataSets(pd); + for (auto& ug : datasets) + { + auto* cd = ug->GetCellData(); + auto* gids = vtkIdTypeArray::SafeDownCast(cd->GetGlobalIds()); + if (!gids) + { + throw std::runtime_error("cell global ids missing!"); + } + } + + this->ElementCounts = ::GetElementCounts(pd, controller); + this->Fields = ::GetFields(vtkDataObject::CELL, pd, controller); + } + + void AppendMD5(vtksysMD5* md5) const override + { + vtksysMD5_Append(md5, reinterpret_cast(this->RootName.c_str()), -1); + for (auto& pair : this->ElementCounts) + { + vtksysMD5_Append(md5, reinterpret_cast(&pair.first), + static_cast(sizeof(pair.first))); + vtksysMD5_Append(md5, reinterpret_cast(&pair.second), + static_cast(sizeof(pair.second))); + } + } + + void Define(Ioss::Region& region) const override + { + for (auto& pair : this->ElementCounts) + { + const int64_t elementCount = pair.second; + const unsigned char vtk_cell_type = pair.first; + + const auto* element = vtkIOSSUtilities::GetElementTopology(vtk_cell_type); + const auto& elementType = element->name(); + + const std::string bname = + (this->ElementCounts.size() == 1) ? this->RootName : this->RootName + "_" + elementType; + auto* block = new Ioss::ElementBlock(region.get_database(), bname, elementType, elementCount); + // FIXME: for now, we let IOSS figure out the id; we need to add logic to + // preserve input id, if we can. + // block->property_add(Ioss::Property("id", id++)); + region.add(block); + } + } + + void DefineTransient(Ioss::Region& region) const override + { + for (auto& pair : this->ElementCounts) + { + unsigned char vtk_cell_type = pair.first; + const int64_t elementCount = pair.second; + + const auto* element = vtkIOSSUtilities::GetElementTopology(vtk_cell_type); + const auto& elementType = element->name(); + const std::string bname = + (this->ElementCounts.size() == 1) ? this->RootName : this->RootName + "_" + elementType; + + auto* block = region.get_element_block(bname); + this->DefineFields(block, this->Fields, Ioss::Field::TRANSIENT, elementCount); + } + } + + void Model(Ioss::Region& region) const override + { + auto datasets = vtkCompositeDataSet::GetDataSets(this->PartitionedDataSet); + for (auto& pair : this->ElementCounts) + { + unsigned char vtk_cell_type = pair.first; + const int64_t elementCount = pair.second; + + const auto* element = vtkIOSSUtilities::GetElementTopology(vtk_cell_type); + const auto& elementType = element->name(); + const int nodeCount = element->number_nodes(); + const std::string bname = + (this->ElementCounts.size() == 1) ? this->RootName : this->RootName + "_" + elementType; + + auto* block = region.get_element_block(bname); + + // populate ids. + std::vector elementIds; // these are global ids. + elementIds.reserve(elementCount); + + std::vector connectivity; + connectivity.reserve(elementCount * nodeCount); + + const int32_t gidOffset = this->Writer->GetOffsetGlobalIds() ? 1 : 0; + for (auto& ug : datasets) + { + auto* gids = vtkIdTypeArray::SafeDownCast(ug->GetCellData()->GetGlobalIds()); + auto* pointGIDs = vtkIdTypeArray::SafeDownCast(ug->GetPointData()->GetGlobalIds()); + + for (vtkIdType cc = 0, max = ug->GetNumberOfCells(); cc < max; ++cc) + { + if (ug->GetCellType(cc) == vtk_cell_type) + { + elementIds.push_back(gidOffset + gids->GetValue(cc)); + + vtkIdType numPts; + vtkIdType const* cellPoints; + ug->GetCellPoints(cc, numPts, cellPoints); + assert(numPts == nodeCount); + + // map cell's point to global ids for those points. + std::transform(cellPoints, cellPoints + numPts, std::back_inserter(connectivity), + [&](vtkIdType ptid) { return gidOffset + pointGIDs->GetValue(ptid); }); + } + } + } + assert(elementIds.size() == elementCount); + assert(connectivity.size() == elementCount * nodeCount); + block->put_field_data("ids", elementIds); + block->put_field_data("connectivity", connectivity); + } + } + + void Transient(Ioss::Region& region) const override + { + auto datasets = vtkCompositeDataSet::GetDataSets(this->PartitionedDataSet); + for (auto& pair : this->ElementCounts) + { + unsigned char vtk_cell_type = pair.first; + const int64_t elementCount = pair.second; + + const auto* element = vtkIOSSUtilities::GetElementTopology(vtk_cell_type); + const auto& elementType = element->name(); + const int nodeCount = element->number_nodes(); + const std::string bname = + (this->ElementCounts.size() == 1) ? this->RootName : this->RootName + "_" + elementType; + + auto* block = region.get_element_block(bname); + + // populate ids. + std::vector> lIds; // these are local ids. + for (auto& ug : datasets) + { + lIds.emplace_back(); + lIds.back().reserve(ug->GetNumberOfCells()); + for (vtkIdType cc = 0, max = ug->GetNumberOfCells(); cc < max; ++cc) + { + if (ug->GetCellType(cc) == vtk_cell_type) + { + lIds.back().push_back(cc); + } + } + } + + // add fields. + this->PutFields(block, this->Fields, lIds, datasets, vtkDataObject::CELL); + } + } +}; + +struct vtkNodeSet : public vtkGroupingEntity +{ + vtkPartitionedDataSet* PartitionedDataSet; + std::string Name; + int64_t Count{ 0 }; + vtkNodeSet(vtkPartitionedDataSet* pd, const std::string& name, + vtkMultiProcessController* vtkNotUsed(controller), vtkIOSSWriter* writer) + : vtkGroupingEntity(writer) + , PartitionedDataSet(pd) + , Name(name) + { + auto datasets = vtkCompositeDataSet::GetDataSets(pd); + for (auto& ug : datasets) + { + auto* gids = vtkIdTypeArray::SafeDownCast(ug->GetPointData()->GetGlobalIds()); + if (!gids) + { + throw std::runtime_error("missing point global ids for nodesets."); + } + this->Count += ug->GetNumberOfPoints(); + } + // TODO: identify nodeset-only fields. + } + + void AppendMD5(vtksysMD5* md5) const override + { + vtksysMD5_Append(md5, reinterpret_cast(this->Name.c_str()), -1); + vtksysMD5_Append(md5, reinterpret_cast(&this->Count), + static_cast(sizeof(this->Count))); + } + + void Define(Ioss::Region& region) const override + { + auto* nodeset = new Ioss::NodeSet(region.get_database(), this->Name, this->Count); + // nodeset->property_add(Ioss::Property("id", id++)); + region.add(nodeset); + } + + void DefineTransient(Ioss::Region& vtkNotUsed(region)) const override {} + + void Model(Ioss::Region& region) const override + { + auto* nodeset = region.get_nodeset(this->Name); + std::vector ids; + ids.reserve(this->Count); + for (auto& ug : vtkCompositeDataSet::GetDataSets(this->PartitionedDataSet)) + { + auto* gids = vtkIdTypeArray::SafeDownCast(ug->GetPointData()->GetGlobalIds()); + std::copy( + gids->GetPointer(0), gids->GetPointer(gids->GetNumberOfTuples()), std::back_inserter(ids)); + } + nodeset->put_field_data("ids", ids); + } + + void Transient(Ioss::Region& vtkNotUsed(region)) const override {} +}; + +struct vtkSideSet : public vtkGroupingEntity +{ + vtkPartitionedDataSet* PartitionedDataSet; + std::string Name; + int64_t Count; + + vtkSideSet(vtkPartitionedDataSet* pd, const std::string& name, + vtkMultiProcessController* vtkNotUsed(controller), vtkIOSSWriter* writer) + : vtkGroupingEntity(writer) + , PartitionedDataSet(pd) + , Name(name) + , Count{ 0 } + { + auto datasets = vtkCompositeDataSet::GetDataSets(pd); + for (auto& ug : datasets) + { + auto* cd = ug->GetCellData(); + if (vtkIdTypeArray::SafeDownCast(cd->GetGlobalIds()) != nullptr) + { + throw std::runtime_error("cell global ids present, must not be a sideset."); + } + + if (vtkIntArray::SafeDownCast(cd->GetArray("element_side")) == nullptr) + { + throw std::runtime_error("missing 'element_side' cell array."); + } + + this->Count += ug->GetNumberOfCells(); + } + } + + void AppendMD5(vtksysMD5* md5) const override + { + vtksysMD5_Append(md5, reinterpret_cast(this->Name.c_str()), -1); + vtksysMD5_Append(md5, reinterpret_cast(&this->Count), + static_cast(sizeof(this->Count))); + } + + void Define(Ioss::Region& region) const override + { + // for mixed topology blocks, IOSS uses "unknown" + const auto* mixed_topo = Ioss::ElementTopology::factory("unknown"); + const auto& elementType = mixed_topo->name(); + auto* sideblock = new Ioss::SideBlock( + region.get_database(), "sideblock_0", elementType, elementType, this->Count); + + auto* sideset = new Ioss::SideSet(region.get_database(), this->Name); + sideset->add(sideblock); + region.add(sideset); + } + + void DefineTransient(Ioss::Region& vtkNotUsed(region)) const override {} + + void Model(Ioss::Region& region) const override + { + auto* sideset = region.get_sideset(this->Name); + auto* sideblock = sideset->get_side_block("sideblock_0"); + + std::vector elementSide; + elementSide.reserve(this->Count * 2); + + auto datasets = vtkCompositeDataSet::GetDataSets(this->PartitionedDataSet); + for (auto& ug : datasets) + { + for (const auto& tuple : vtk::DataArrayTupleRange( + vtkIntArray::SafeDownCast(ug->GetCellData()->GetArray("element_side")))) + { + for (const auto& comp : tuple) + { + elementSide.push_back(comp); + } + } + } + + assert(elementSide.size() == this->Count * 2); + sideblock->put_field_data("element_side", elementSide); + } + + void Transient(Ioss::Region& vtkNotUsed(region)) const override {} +}; + +//============================================================================= +class vtkIOSSModel::vtkInternals +{ +public: + vtkSmartPointer Controller; + std::multimap> EntityGroups; +}; + +//---------------------------------------------------------------------------- +vtkIOSSModel::vtkIOSSModel(vtkPartitionedDataSetCollection* dataset, vtkIOSSWriter* writer) + : Internals(new vtkIOSSModel::vtkInternals()) +{ + auto* controller = writer->GetController(); + auto& internals = (*this->Internals); + internals.Controller = controller + ? vtk::MakeSmartPointer(controller) + : vtk::TakeSmartPointer(vtkMultiProcessController::SafeDownCast(vtkDummyController::New())); + + auto* assembly = dataset->GetDataAssembly(); + const bool isIOSS = writer->GetPreserveInputEntityGroups() && + (assembly && assembly->GetRootNodeName() && strcmp(assembly->GetRootNodeName(), "IOSS") == 0); + const auto elementBlockIndices = ::GetDatasetIndices(assembly, "element_blocks"); + const auto nodeSetIndices = ::GetDatasetIndices(assembly, "node_sets"); + const auto sideSetIndices = ::GetDatasetIndices(assembly, "side_sets"); + + // first things first, determine all information necessary about nodes. + // there's just 1 node block for exodus, build that. + internals.EntityGroups.emplace(Ioss::EntityType::NODEBLOCK, + std::make_shared(dataset, "nodeblock_1", internals.Controller, writer)); + + // process element blocks. + // now, if input is not coming for IOSS reader, then all blocks are simply + // treated as element blocks, there's no way for us to deduce otherwise. + // let's start by simply doing that. + for (unsigned int pidx = 0; pidx < dataset->GetNumberOfPartitionedDataSets(); ++pidx) + { + std::string bname = "block_" + std::to_string(pidx + 1); + if (auto info = dataset->GetMetaData(pidx)) + { + if (info->Has(vtkCompositeDataSet::NAME())) + { + bname = info->Get(vtkCompositeDataSet::NAME()); + } + } + + // now create each type of GroupingEntity. + if (!isIOSS || elementBlockIndices.find(pidx) != elementBlockIndices.end()) + { + try + { + internals.EntityGroups.emplace(Ioss::EntityType::ELEMENTBLOCK, + std::make_shared( + dataset->GetPartitionedDataSet(pidx), bname, internals.Controller, writer)); + continue; + } + catch (std::runtime_error&) + { + // if isIOSS, raise error...perhaps? + break; + } + } + + if (sideSetIndices.find(pidx) != sideSetIndices.end()) + { + try + { + internals.EntityGroups.emplace(Ioss::EntityType::SIDESET, + std::make_shared( + dataset->GetPartitionedDataSet(pidx), bname, internals.Controller, writer)); + continue; + } + catch (std::runtime_error&) + { + break; + } + } + + // nodesets are the most forgiving kind, so let's do them last. + if (nodeSetIndices.find(pidx) != nodeSetIndices.end()) + { + try + { + internals.EntityGroups.emplace(Ioss::EntityType::NODESET, + std::make_shared( + dataset->GetPartitionedDataSet(pidx), bname, internals.Controller, writer)); + continue; + } + catch (std::runtime_error&) + { + break; + } + } + + vtkLogF(WARNING, "Skipping block '%s'. Unsure how classify it.", bname.c_str()); + } +} + +//---------------------------------------------------------------------------- +vtkIOSSModel::~vtkIOSSModel() = default; + +//---------------------------------------------------------------------------- +void vtkIOSSModel::DefineModel(Ioss::Region& region) const +{ + auto& internals = (*this->Internals); + region.begin_mode(Ioss::STATE_DEFINE_MODEL); + for (auto& entity : internals.EntityGroups) + { + entity.second->Define(region); + } + region.end_mode(Ioss::STATE_DEFINE_MODEL); +} + +//---------------------------------------------------------------------------- +void vtkIOSSModel::Model(Ioss::Region& region) const +{ + auto& internals = (*this->Internals); + region.begin_mode(Ioss::STATE_MODEL); + for (auto& entity : internals.EntityGroups) + { + entity.second->Model(region); + } + region.end_mode(Ioss::STATE_MODEL); +} + +//---------------------------------------------------------------------------- +void vtkIOSSModel::DefineTransient(Ioss::Region& region) const +{ + auto& internals = (*this->Internals); + region.begin_mode(Ioss::STATE_DEFINE_TRANSIENT); + for (auto& entity : internals.EntityGroups) + { + entity.second->DefineTransient(region); + } + region.end_mode(Ioss::STATE_DEFINE_TRANSIENT); +} + +//---------------------------------------------------------------------------- +void vtkIOSSModel::Transient(Ioss::Region& region, double time) const +{ + auto& internals = (*this->Internals); + region.begin_mode(Ioss::STATE_TRANSIENT); + const int step = region.add_state(time); + region.begin_state(step); + for (auto& entity : internals.EntityGroups) + { + entity.second->Transient(region); + } + region.end_state(step); + region.end_mode(Ioss::STATE_TRANSIENT); +} + +//---------------------------------------------------------------------------- +std::string vtkIOSSModel::MD5() const +{ + unsigned char digest[16]; + char md5Hash[33]; + + vtksysMD5* md5 = vtksysMD5_New(); + vtksysMD5_Initialize(md5); + + const auto& internals = (*this->Internals); + size_t numberOfItems = internals.EntityGroups.size(); + vtksysMD5_Append( + md5, reinterpret_cast(&numberOfItems), static_cast(sizeof(size_t))); + + for (const auto& entity : internals.EntityGroups) + { + entity.second->AppendMD5(md5); + } + + vtksysMD5_Finalize(md5, digest); + vtksysMD5_DigestToHex(digest, md5Hash); + vtksysMD5_Delete(md5); + md5Hash[32] = '\0'; + return std::string(md5Hash); +} diff --git a/IO/IOSS/vtkIOSSModel.h b/IO/IOSS/vtkIOSSModel.h new file mode 100644 index 000000000000..f95ca57fbdfb --- /dev/null +++ b/IO/IOSS/vtkIOSSModel.h @@ -0,0 +1,67 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkIOSSModel.h + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/** + * @class vtkIOSSModel + * @brief internal class used by vtkIOSSWriter + * + * vtkIOSSModel is a helper class used by vtkIOSSWriter. It helps us construct a + * data structure more suitable for serializing to IOSS from a + * vtkPartitionedDataSetCollection. + */ + +#ifndef vtkIOSSModel_h +#define vtkIOSSModel_h + +#include "vtkObject.h" +#include // for std::unique_ptr + +// Ioss includes +#include +// clang-format off +#include VTK_IOSS(Ioss_Region.h) +// clang-format on + +class vtkIOSSWriter; +class vtkPartitionedDataSetCollection; + +class vtkIOSSModel +{ +public: + vtkIOSSModel(vtkPartitionedDataSetCollection* pdc, vtkIOSSWriter* self); + ~vtkIOSSModel(); + + void DefineModel(Ioss::Region& region) const; + void DefineTransient(Ioss::Region& region) const; + void Model(Ioss::Region& region) const; + void Transient(Ioss::Region& region, double time) const; + + /** + * Generates an MD5 sum summarizing the model. This is used to test if the + * model has changed enough so that it requires a redefinition. + * + * This is not perfect, but is a reasonable option for now. + */ + std::string MD5() const; + +private: + vtkIOSSModel(const vtkIOSSModel&) = delete; + void operator=(const vtkIOSSModel&) = delete; + + class vtkInternals; + std::unique_ptr Internals; +}; + +#endif +// VTK-HeaderTest-Exclude: vtkIOSSModel.h diff --git a/IO/IOSS/vtkIOSSUtilities.cxx b/IO/IOSS/vtkIOSSUtilities.cxx index ba42ffa94ded..e5d62f01eef8 100644 --- a/IO/IOSS/vtkIOSSUtilities.cxx +++ b/IO/IOSS/vtkIOSSUtilities.cxx @@ -22,10 +22,12 @@ #include "vtkArrayDispatch.h" #include "vtkCellArray.h" #include "vtkCellType.h" +#include "vtkDataSet.h" #include "vtkGenericCell.h" #include "vtkIdTypeArray.h" #include "vtkLogger.h" #include "vtkObjectFactory.h" +#include "vtkPointData.h" #include "vtkPoints.h" #include @@ -394,6 +396,87 @@ int GetCellType(const Ioss::ElementTopology* topology) throw std::runtime_error("Unsupported topology " + topology->name()); } +//---------------------------------------------------------------------------- +const Ioss::ElementTopology* GetElementTopology(int vtk_cell_type) +{ + const char* elementType = nullptr; + switch (vtk_cell_type) + { + case VTK_VERTEX: + case VTK_POLY_VERTEX: + elementType = "point"; + break; + case VTK_LINE: + elementType = "edge2"; + break; + case VTK_QUADRATIC_EDGE: + elementType = "edge4"; + break; + case VTK_TRIANGLE: + elementType = "tri3"; + break; + case VTK_QUADRATIC_TRIANGLE: + elementType = "tri6"; + break; + case VTK_QUAD: + elementType = "quad4"; + break; + case VTK_QUADRATIC_QUAD: + elementType = "quad8"; + break; + case VTK_BIQUADRATIC_QUAD: + elementType = "quad9"; + break; + case VTK_TETRA: + elementType = "tet4"; + break; + case VTK_QUADRATIC_TETRA: + elementType = "tet11"; + break; + case VTK_LAGRANGE_TETRAHEDRON: + elementType = "tet15"; + break; + case VTK_QUADRATIC_PYRAMID: + elementType = "pyramid13"; + break; + case VTK_TRIQUADRATIC_PYRAMID: + elementType = "pyramid19"; + break; + case VTK_PYRAMID: + elementType = "pyramid5"; + break; + case VTK_QUADRATIC_WEDGE: + elementType = "wedge15"; + break; + case VTK_BIQUADRATIC_QUADRATIC_WEDGE: + elementType = "wedge18"; + break; + case VTK_LAGRANGE_WEDGE: + elementType = "wedge21"; + break; + case VTK_WEDGE: + elementType = "wedge6"; + break; + case VTK_HEXAHEDRON: + elementType = "hex8"; + break; + case VTK_QUADRATIC_HEXAHEDRON: + elementType = "hex20"; + break; + case VTK_TRIQUADRATIC_HEXAHEDRON: + elementType = "hex27"; + break; + } + + if (auto* element = elementType ? Ioss::ElementTopology::factory(elementType) : nullptr) + { + return element; + } + + vtkLogF(ERROR, "VTK cell type (%d) cannot be mapped to an Ioss element type!", vtk_cell_type); + throw std::runtime_error("Unsupported cell type " + std::to_string(vtk_cell_type)); +} + //---------------------------------------------------------------------------- // internal: get number of points in VTK cell type. static vtkIdType GetNumberOfPointsInCellType(int vtk_cell_type) @@ -769,6 +852,31 @@ std::string GetDisplacementFieldName(Ioss::GroupingEntity* nodeblock) return std::string(); } +//---------------------------------------------------------------------------- +std::string GetDisplacementFieldName(vtkDataSet* dataset) +{ + if (dataset == nullptr) + { + return std::string(); + } + + auto* pd = dataset->GetPointData(); + for (int cc = 0, max = pd->GetNumberOfArrays(); cc < max; ++cc) + { + auto* array = pd->GetArray(cc); + std::string arrayName = (array && array->GetName()) ? array->GetName() : ""; + if (vtksys::SystemTools::UpperCase(arrayName.substr(0, 3)) == "DIS" && + array->GetNumberOfComponents() == 3) + { + // while not true currently, once paraview/paraview#21237 is fixed, all + // displacement vectors will be 3 component arrays. + return arrayName; + } + } + + return std::string(); +} + //---------------------------------------------------------------------------- DatabaseFormatType DetectType(const std::string& dbaseName) { diff --git a/IO/IOSS/vtkIOSSUtilities.h b/IO/IOSS/vtkIOSSUtilities.h index 084c5f032cf1..6cc5138cb5ec 100644 --- a/IO/IOSS/vtkIOSSUtilities.h +++ b/IO/IOSS/vtkIOSSUtilities.h @@ -54,6 +54,8 @@ #include class vtkCellArray; +class vtkDataSet; + namespace vtkIOSSUtilities { @@ -215,6 +217,15 @@ vtkSmartPointer GetData(const Ioss::GroupingEntity* entity, */ int GetCellType(const Ioss::ElementTopology* topology); +/** + * Returns an Ioss topology element, if possible, given a VTK cell type. + * + * This is inverse of GetCellType. + * + * Throws `std::runtime_error` for unknown and unsupported element types. + */ +const Ioss::ElementTopology* GetElementTopology(int vtk_cell_type); + /** * Read connectivity information from the group_entity. * @@ -244,10 +255,13 @@ vtkSmartPointer GetMeshModelCoordinates( */ bool IsFieldTransient(Ioss::GroupingEntity* entity, const std::string& fieldname); +///@{ /** * Finds a displacement field name. Returns empty string if none can be found. */ std::string GetDisplacementFieldName(Ioss::GroupingEntity* nodeblock); +std::string GetDisplacementFieldName(vtkDataSet* dataset); +///@} /** * Must be called before using any Ioss library functions. Necessary to diff --git a/IO/IOSS/vtkIOSSWriter.cxx b/IO/IOSS/vtkIOSSWriter.cxx new file mode 100644 index 000000000000..cd65a242bb78 --- /dev/null +++ b/IO/IOSS/vtkIOSSWriter.cxx @@ -0,0 +1,286 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkIOSSWriter.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +#include "vtkIOSSWriter.h" + +#include "vtkIOSSModel.h" +#include "vtkInformation.h" +#include "vtkInformationVector.h" +#include "vtkLogger.h" +#include "vtkMultiProcessController.h" +#include "vtkObjectFactory.h" +#include "vtkPartitionedDataSet.h" +#include "vtkPartitionedDataSetCollection.h" +#include "vtkStreamingDemandDrivenPipeline.h" +#include "vtkUnstructuredGrid.h" +#include "vtkVersion.h" + +// Ioss includes +#include +// clang-format off +#include VTK_IOSS(Ionit_Initializer.h) +#include VTK_IOSS(Ioss_Assembly.h) +#include VTK_IOSS(Ioss_DatabaseIO.h) +#include VTK_IOSS(Ioss_EdgeBlock.h) +#include VTK_IOSS(Ioss_EdgeSet.h) +#include VTK_IOSS(Ioss_ElementBlock.h) +#include VTK_IOSS(Ioss_ElementSet.h) +#include VTK_IOSS(Ioss_FaceBlock.h) +#include VTK_IOSS(Ioss_FaceSet.h) +#include VTK_IOSS(Ioss_IOFactory.h) +#include VTK_IOSS(Ioss_NodeBlock.h) +#include VTK_IOSS(Ioss_NodeSet.h) +#include VTK_IOSS(Ioss_Region.h) +#include VTK_IOSS(Ioss_SideBlock.h) +#include VTK_IOSS(Ioss_SideSet.h) +#include VTK_IOSS(Ioss_StructuredBlock.h) +// clang-format on + +#include +#include +#include + +// clang-format off +#include // needed for `fmt` +#include VTK_FMT(fmt/core.h) +// clang-format on + +class vtkIOSSWriter::vtkInternals +{ + Ioss::Init::Initializer io; + vtkIOSSWriter* Self = nullptr; + +public: + std::unique_ptr Region; + std::vector TimeSteps; + int CurrentTimeStep{ 0 }; + int RestartIndex{ 0 }; + std::string LastMD5; + + vtkInternals(vtkIOSSWriter* self) + : Self(self) + { + } + ~vtkInternals() = default; +}; + +vtkStandardNewMacro(vtkIOSSWriter); +vtkCxxSetObjectMacro(vtkIOSSWriter, Controller, vtkMultiProcessController); +//---------------------------------------------------------------------------- +vtkIOSSWriter::vtkIOSSWriter() + : Internals(new vtkIOSSWriter::vtkInternals(this)) + , Controller(nullptr) + , FileName(nullptr) + , OffsetGlobalIds(false) + , PreserveInputEntityGroups(false) + , DisplacementMagnitude(1.0) + , MaximumTimeStepsPerFile(0) +{ + this->SetController(vtkMultiProcessController::GetGlobalController()); +} + +//---------------------------------------------------------------------------- +vtkIOSSWriter::~vtkIOSSWriter() +{ + this->SetController(nullptr); + this->SetFileName(nullptr); +} + +//------------------------------------------------------------------------------ +int vtkIOSSWriter::FillInputPortInformation(int vtkNotUsed(port), vtkInformation* info) +{ + info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPartitionedDataSetCollection"); + info->Append(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPartitionedDataSet"); + info->Append(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkUnstructuredGrid"); + return 1; +} + +//------------------------------------------------------------------------------ +bool vtkIOSSWriter::Write() +{ + // Make sure we have input. + if (this->GetNumberOfInputConnections(0) < 1) + { + vtkErrorMacro("No input provided!"); + return false; + } + + // always write even if the data hasn't changed + this->Modified(); + this->Update(); + return true; +} + +//---------------------------------------------------------------------------- +int vtkIOSSWriter::RequestInformation( + vtkInformation* request, vtkInformationVector** inputVector, vtkInformationVector* outputVector) +{ + auto& internals = (*this->Internals); + auto* inInfo = inputVector[0]->GetInformationObject(0); + if (inInfo->Has(vtkStreamingDemandDrivenPipeline::TIME_STEPS())) + { + const auto numTimesteps = inInfo->Length(vtkStreamingDemandDrivenPipeline::TIME_STEPS()); + const auto* timesteps = inInfo->Get(vtkStreamingDemandDrivenPipeline::TIME_STEPS()); + internals.TimeSteps.resize(numTimesteps); + std::copy(timesteps, timesteps + numTimesteps, internals.TimeSteps.begin()); + } + else + { + internals.TimeSteps.clear(); + } + internals.CurrentTimeStep = 0; + + return this->Superclass::RequestInformation(request, inputVector, outputVector); +} + +//---------------------------------------------------------------------------- +int vtkIOSSWriter::RequestUpdateExtent( + vtkInformation* request, vtkInformationVector** inputVector, vtkInformationVector* outputVector) +{ + auto* info = inputVector[0]->GetInformationObject(0); + if (auto* controller = this->GetController()) + { + const int rank = controller->GetLocalProcessId(); + const int numRanks = controller->GetNumberOfProcesses(); + + info->Set(vtkStreamingDemandDrivenPipeline::UPDATE_PIECE_NUMBER(), rank); + info->Set(vtkStreamingDemandDrivenPipeline::UPDATE_NUMBER_OF_PIECES(), numRanks); + } + + auto& internals = (*this->Internals); + if (internals.CurrentTimeStep >= 0 && + internals.CurrentTimeStep < static_cast(internals.TimeSteps.size())) + { + info->Set(vtkStreamingDemandDrivenPipeline::UPDATE_TIME_STEP(), + internals.TimeSteps[internals.CurrentTimeStep]); + } + else + { + info->Remove(vtkStreamingDemandDrivenPipeline::UPDATE_TIME_STEP()); + } + + return this->Superclass::RequestUpdateExtent(request, inputVector, outputVector); +} + +//---------------------------------------------------------------------------- +int vtkIOSSWriter::RequestData(vtkInformation* request, vtkInformationVector** inputVector, + vtkInformationVector* vtkNotUsed(outputVector)) +{ + if (!this->FileName || !this->FileName[0]) + { + vtkErrorMacro("Cannot write without a valid filename!"); + return 0; + } + + vtkSmartPointer inputDO = vtkDataObject::GetData(inputVector[0], 0); + if (vtkUnstructuredGrid::SafeDownCast(inputDO)) + { + vtkNew pd; + pd->SetPartition(0, inputDO); + inputDO = pd; + } + + if (auto* pd = vtkPartitionedDataSet::SafeDownCast(inputDO)) + { + vtkNew pdc; + pdc->SetPartitionedDataSet(0, pd); + inputDO = pdc; + } + + auto* inputPDC = vtkPartitionedDataSetCollection::SafeDownCast(inputDO); + if (!inputPDC) + { + vtkErrorMacro("Incorrect input type!"); + return 0; + } + + auto* controller = this->GetController(); + + const vtkIOSSModel model(inputPDC, this); + const auto md5 = model.MD5(); + vtkLogF(TRACE, "MD5: %s", md5.c_str()); + + auto& internals = (*this->Internals); + if (internals.CurrentTimeStep == 0 || internals.LastMD5 != md5 || + (this->MaximumTimeStepsPerFile > 0 && + internals.CurrentTimeStep % this->MaximumTimeStepsPerFile == 0)) + { + internals.RestartIndex = internals.CurrentTimeStep == 0 ? 0 : (internals.RestartIndex + 1); + + Ioss::PropertyManager properties; + // if I use "8" here, then I get the following error: + // EXODUS: ERROR: 64-bit integer storage requested, but the netcdf library + // does not support the required netcdf-4 or 64BIT_DATA extensions. + // So until we can track that down, just leaving this at 32-bit (4 byte). + properties.add(Ioss::Property("INTEGER_SIZE_API", 4)); + properties.add(Ioss::Property("FIELD_SUFFIX_SEPARATOR", "_")); + if (controller && controller->GetNumberOfProcesses() > 1) + { + properties.add(Ioss::Property("my_processor", controller->GetLocalProcessId())); + properties.add(Ioss::Property("processor_count", controller->GetNumberOfProcesses())); + } + const auto fname = internals.RestartIndex > 0 + ? fmt::format("{}-s{:04}", this->FileName, internals.RestartIndex) + : std::string(this->FileName); + + Ioss::DatabaseIO* dbase = Ioss::IOFactory::create( + "exodus", fname, Ioss::WRITE_RESTART, Ioss::ParallelUtils::comm_world(), properties); + if (dbase == nullptr || !dbase->ok(true)) + { + return 0; + } + + // note: region takes ownership of `dbase` pointer. + internals.Region.reset(new Ioss::Region(dbase, "region_1")); + internals.Region->property_add(Ioss::Property("code_name", std::string("VTK"))); + internals.Region->property_add( + Ioss::Property("code_version", std::string(vtkVersion::GetVTKVersion()))); + + model.DefineModel(*internals.Region); + model.DefineTransient(*internals.Region); + model.Model(*internals.Region); + internals.LastMD5 = md5; + } + + auto inputInfo = inputDO->GetInformation(); + const double time = inputInfo->Has(vtkDataObject::DATA_TIME_STEP()) + ? inputInfo->Get(vtkDataObject::DATA_TIME_STEP()) + : 0.0; + + model.Transient(*internals.Region, /*time=*/time); + + ++internals.CurrentTimeStep; + if (internals.CurrentTimeStep < internals.TimeSteps.size()) + { + request->Set(vtkStreamingDemandDrivenPipeline::CONTINUE_EXECUTING(), 1); + } + else + { + internals.CurrentTimeStep = 0; + request->Remove(vtkStreamingDemandDrivenPipeline::CONTINUE_EXECUTING()); + } + return 1; +} + +//---------------------------------------------------------------------------- +void vtkIOSSWriter::PrintSelf(ostream& os, vtkIndent indent) +{ + this->Superclass::PrintSelf(os, indent); + os << indent << "FileName: " << (this->FileName ? this->FileName : "(nullptr)") << endl; + os << indent << "Controller: " << this->Controller << endl; + os << indent << "OffsetGlobalIds: " << OffsetGlobalIds << endl; + os << indent << "PreserveInputEntityGroups: " << this->PreserveInputEntityGroups << endl; + os << indent << "DisplacementMagnitude: " << this->DisplacementMagnitude << endl; + os << indent << "MaximumTimeStepsPerFile: " << this->MaximumTimeStepsPerFile << endl; +} diff --git a/IO/IOSS/vtkIOSSWriter.h b/IO/IOSS/vtkIOSSWriter.h new file mode 100644 index 000000000000..6dd7123fe181 --- /dev/null +++ b/IO/IOSS/vtkIOSSWriter.h @@ -0,0 +1,145 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkIOSSWriter.h + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/** + * @class vtkIOSSWriter + * @brief writer using IOSS + * + * vtkIOSSWriter is a writer to write datasets using IOSS library. Currently + * this writer supports writing Exodus files. This writer is a work in progress + * and currently only supports targeted use-cases. The writer will be + * iteratively cleaned up and fixed to support all types of incoming datasets. + */ + +#ifndef vtkIOSSWriter_h +#define vtkIOSSWriter_h + +#include "vtkDataObjectAlgorithm.h" +#include "vtkIOIOSSModule.h" // for export macros + +#include // for std::unique_ptr + +class vtkMultiProcessController; + +class VTKIOIOSS_EXPORT vtkIOSSWriter : public vtkDataObjectAlgorithm +{ +public: + static vtkIOSSWriter* New(); + vtkTypeMacro(vtkIOSSWriter, vtkDataObjectAlgorithm); + void PrintSelf(ostream& os, vtkIndent indent) override; + + ///@{ + /** + * Get/set the filename. When writing in a distributed environment, the + * actual filename written out may be different. + */ + vtkSetStringMacro(FileName); + vtkGetStringMacro(FileName); + ///@} + + ///@{ + /** + * Exodus wants global ids to start with 1, while VTK generally produces + * global ids starting with 0. Set this to true (default false), if the global + * ids are generated by VTK and hence start with 0. When writing to the output + * file, they will be offset by 1 to ensure the ids are valid exodus ids. + */ + vtkSetMacro(OffsetGlobalIds, bool); + vtkGetMacro(OffsetGlobalIds, bool); + vtkBooleanMacro(OffsetGlobalIds, bool); + ///@} + + ///@{ + /** + * If input is untransformed IOSS dataset, then the writer can preserve entity + * group classifications, such as element blocks, side sets etc. The same is + * not true if the input has been transformed e.g. through a clip filter. Thus + * flag is used to indicate whether the input has valid element + * classifications. + */ + vtkSetMacro(PreserveInputEntityGroups, bool); + vtkGetMacro(PreserveInputEntityGroups, bool); + vtkBooleanMacro(PreserveInputEntityGroups, bool); + ///@} + + ///@{ + /** + * If input dataset has displacements pre-applied, setting the displacement + * magnitude to non-zero ensures that the point coordinates in the dataset are + * correctly transformed using the displacement field array, if present. + * + * Defaults to 1.0. + */ + vtkSetClampMacro(DisplacementMagnitude, double, 0, VTK_DOUBLE_MAX); + vtkGetMacro(DisplacementMagnitude, double); + ///@} + + ///@{ + /** + * A debugging variable, set this to non-zero positive number to save at most + * the specified number of timesteps in a single file before starting a new + * one. The writer may start new files (aka restarts) automatically if it + * determines that the mesh has changed. + * + * Defaults to 0 i.e. unlimited timesteps per file. + */ + vtkSetClampMacro(MaximumTimeStepsPerFile, int, 0, VTK_INT_MAX); + vtkGetMacro(MaximumTimeStepsPerFile, int); + ///@} + + ///@{ + /** + * Get/Set the controller to use when working in parallel. Initialized to + * `vtkMultiProcessController::GetGlobalController` in the constructor. + * + * The controller is used to determine the upstream piece request in + * RequestUpdateExtent. + */ + void SetController(vtkMultiProcessController* controller); + vtkGetObjectMacro(Controller, vtkMultiProcessController); + ///@} + + /** + * Writes the input dataset. + */ + bool Write(); + +protected: + vtkIOSSWriter(); + ~vtkIOSSWriter() override; + + int FillInputPortInformation(int port, vtkInformation* info) override; + int RequestInformation(vtkInformation* request, vtkInformationVector** inputVector, + vtkInformationVector* outputVector) override; + int RequestUpdateExtent(vtkInformation* request, vtkInformationVector** inputVector, + vtkInformationVector* outputVector) override; + int RequestData(vtkInformation* request, vtkInformationVector** inputVector, + vtkInformationVector* outputVector) override; + +private: + vtkIOSSWriter(const vtkIOSSWriter&) = delete; + void operator=(const vtkIOSSWriter&) = delete; + + class vtkInternals; + std::unique_ptr Internals; + + vtkMultiProcessController* Controller; + char* FileName; + bool OffsetGlobalIds; + bool PreserveInputEntityGroups; + double DisplacementMagnitude; + int MaximumTimeStepsPerFile; +}; + +#endif -- GitLab From a514cbb8021132e178ce26e3a65788593f70cd95 Mon Sep 17 00:00:00 2001 From: Jean-Christophe Fillion-Robin Date: Thu, 14 Apr 2022 09:47:59 -0400 Subject: [PATCH 0100/1015] wheel: Support building VTK wheel along with VTK SDK --- CMake/vtkWheelPreparation.cmake | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/CMake/vtkWheelPreparation.cmake b/CMake/vtkWheelPreparation.cmake index 905deb8815a2..f2f807ab0c71 100644 --- a/CMake/vtkWheelPreparation.cmake +++ b/CMake/vtkWheelPreparation.cmake @@ -65,7 +65,9 @@ else () endif () set(VTK_PYTHON_SITE_PACKAGES_SUFFIX ".") set(VTK_CUSTOM_LIBRARY_SUFFIX "") -set(VTK_INSTALL_SDK OFF) +if(NOT DEFINED VTK_INSTALL_SDK) + set(VTK_INSTALL_SDK OFF) +endif() set(VTK_INSTALL_PYTHON_EXES OFF) set(BUILD_SHARED_LIBS ON) -- GitLab From c29c922abd0d723dc02d270571fb16200f8f665a Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Fri, 6 May 2022 00:01:32 -0400 Subject: [PATCH 0101/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 1f609d8c0e8f..a154cf4b8df7 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220505) +set(VTK_BUILD_VERSION 20220506) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 38014527baa08855e5d49849d2f2f10a21e76caa Mon Sep 17 00:00:00 2001 From: Nicolas Vuaille Date: Fri, 10 Dec 2021 12:31:19 +0100 Subject: [PATCH 0102/1015] Introduce CatalystConduit module * from ParaView. --- .../release/dev/CatalystConduitModule.md | 13 + IO/CatalystConduit/CMakeLists.txt | 13 + IO/CatalystConduit/Testing/CMakeLists.txt | 1 + IO/CatalystConduit/Testing/Cxx/CMakeLists.txt | 6 + .../Testing/Cxx/TestConduitSource.cxx | 219 +++++ .../Testing/Cxx/TestDataObjectToConduit.cxx | 801 ++++++++++++++++++ IO/CatalystConduit/vtk.module | 15 + .../vtkConduitArrayUtilities.cxx | 544 ++++++++++++ IO/CatalystConduit/vtkConduitArrayUtilities.h | 98 +++ IO/CatalystConduit/vtkConduitSource.cxx | 770 +++++++++++++++++ IO/CatalystConduit/vtkConduitSource.h | 114 +++ IO/CatalystConduit/vtkDataObjectToConduit.cxx | 501 +++++++++++ IO/CatalystConduit/vtkDataObjectToConduit.h | 46 + 13 files changed, 3141 insertions(+) create mode 100644 Documentation/release/dev/CatalystConduitModule.md create mode 100644 IO/CatalystConduit/CMakeLists.txt create mode 100644 IO/CatalystConduit/Testing/CMakeLists.txt create mode 100644 IO/CatalystConduit/Testing/Cxx/CMakeLists.txt create mode 100644 IO/CatalystConduit/Testing/Cxx/TestConduitSource.cxx create mode 100644 IO/CatalystConduit/Testing/Cxx/TestDataObjectToConduit.cxx create mode 100644 IO/CatalystConduit/vtk.module create mode 100644 IO/CatalystConduit/vtkConduitArrayUtilities.cxx create mode 100644 IO/CatalystConduit/vtkConduitArrayUtilities.h create mode 100644 IO/CatalystConduit/vtkConduitSource.cxx create mode 100644 IO/CatalystConduit/vtkConduitSource.h create mode 100644 IO/CatalystConduit/vtkDataObjectToConduit.cxx create mode 100644 IO/CatalystConduit/vtkDataObjectToConduit.h diff --git a/Documentation/release/dev/CatalystConduitModule.md b/Documentation/release/dev/CatalystConduitModule.md new file mode 100644 index 000000000000..2025e8d7f4fa --- /dev/null +++ b/Documentation/release/dev/CatalystConduitModule.md @@ -0,0 +1,13 @@ +# Introduce Catalyst Conduit Module + +[Conduit](https://llnl-conduit.readthedocs.io/en/latest/index.html) is a standard to describe and exchange simulation data, with HPC context in mind. + +CatalystConduit is a new optional module, relying on [Catalyst Conduit](https://catalyst-in-situ.readthedocs.io/en/latest/introduction.html#relationship-with-conduit). +This is an external dependency so on have to get the [Catalyst lib](https://gitlab.kitware.com/paraview/catalyst) on their own. + +We rely on Catalyst version of Conduit, to ensure compatibility with Catalyst implementations. + +Main content: + * `vtkConduitSource` : a VTK source that can generate a `vtkPartionedDataSet` or `vtkPartionedDataSetCollection` from a given Conduit node. + It also has an option to output `vtkMultiBlockDataSet` for historical reason. + * `vtkDataObjectToConduit` is a utility namespace to get a conduit node from any `vtkDataObject`. diff --git a/IO/CatalystConduit/CMakeLists.txt b/IO/CatalystConduit/CMakeLists.txt new file mode 100644 index 000000000000..a82cd04593d0 --- /dev/null +++ b/IO/CatalystConduit/CMakeLists.txt @@ -0,0 +1,13 @@ +set(classes + vtkConduitArrayUtilities + vtkConduitSource + vtkDataObjectToConduit) + +vtk_module_find_package(PACKAGE catalyst) + +vtk_module_add_module(VTK::IOCatalystConduit + CLASSES ${classes}) + +vtk_module_link(VTK::IOCatalystConduit + PUBLIC + catalyst::catalyst) diff --git a/IO/CatalystConduit/Testing/CMakeLists.txt b/IO/CatalystConduit/Testing/CMakeLists.txt new file mode 100644 index 000000000000..35f9732a938a --- /dev/null +++ b/IO/CatalystConduit/Testing/CMakeLists.txt @@ -0,0 +1 @@ +add_subdirectory(Cxx) diff --git a/IO/CatalystConduit/Testing/Cxx/CMakeLists.txt b/IO/CatalystConduit/Testing/Cxx/CMakeLists.txt new file mode 100644 index 000000000000..550c5ee74085 --- /dev/null +++ b/IO/CatalystConduit/Testing/Cxx/CMakeLists.txt @@ -0,0 +1,6 @@ +vtk_add_test_cxx(vtkConduitCxxTests tests + NO_DATA NO_VALID NO_OUTPUT + TestDataObjectToConduit.cxx + TestConduitSource.cxx) + +vtk_test_cxx_executable(vtkConduitCxxTests tests) diff --git a/IO/CatalystConduit/Testing/Cxx/TestConduitSource.cxx b/IO/CatalystConduit/Testing/Cxx/TestConduitSource.cxx new file mode 100644 index 000000000000..8a4a80d6d163 --- /dev/null +++ b/IO/CatalystConduit/Testing/Cxx/TestConduitSource.cxx @@ -0,0 +1,219 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestConduitSource.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ + +#include "vtkCellData.h" +#include "vtkConduitSource.h" +#include "vtkImageData.h" +#include "vtkLogger.h" +#include "vtkNew.h" +#include "vtkPartitionedDataSet.h" +#include "vtkRectilinearGrid.h" +#include "vtkSmartPointer.h" +#include "vtkStructuredGrid.h" +#include "vtkUnstructuredGrid.h" +#include "vtkVector.h" +#include "vtkVectorOperators.h" + +#include + +#define VERIFY(x, ...) \ + if ((x) == false) \ + { \ + vtkLogF(ERROR, __VA_ARGS__); \ + return false; \ + } + +namespace +{ + +vtkSmartPointer Convert(const conduit_cpp::Node& node) +{ + vtkNew source; + source->SetNode(conduit_cpp::c_node(&node)); + source->Update(); + return source->GetOutputDataObject(0); +} + +bool ValidateMeshTypeUniform() +{ + conduit_cpp::Node mesh; + conduit_cpp::BlueprintMesh::Example::basic("uniform", 3, 3, 3, mesh); + auto data = Convert(mesh); + VERIFY(vtkPartitionedDataSet::SafeDownCast(data) != nullptr, + "incorrect data type, expected vtkPartitionedDataSet, got %s", vtkLogIdentifier(data)); + auto pds = vtkPartitionedDataSet::SafeDownCast(data); + VERIFY(pds->GetNumberOfPartitions() == 1, "incorrect number of partitions, expected 1, got %d", + pds->GetNumberOfPartitions()); + auto img = vtkImageData::SafeDownCast(pds->GetPartition(0)); + VERIFY(img != nullptr, "missing partition 0"); + VERIFY(vtkVector3i(img->GetDimensions()) == vtkVector3i(3, 3, 3), + "incorrect dimensions, expected=3x3x3, got=%dx%dx%d", img->GetDimensions()[0], + img->GetDimensions()[1], img->GetDimensions()[2]); + + return true; +} + +bool ValidateMeshTypeRectilinear() +{ + conduit_cpp::Node mesh; + conduit_cpp::BlueprintMesh::Example::basic("rectilinear", 3, 3, 3, mesh); + auto data = Convert(mesh); + VERIFY(vtkPartitionedDataSet::SafeDownCast(data) != nullptr, + "incorrect data type, expected vtkPartitionedDataSet, got %s", vtkLogIdentifier(data)); + auto pds = vtkPartitionedDataSet::SafeDownCast(data); + VERIFY(pds->GetNumberOfPartitions() == 1, "incorrect number of partitions, expected 1, got %d", + pds->GetNumberOfPartitions()); + auto rg = vtkRectilinearGrid::SafeDownCast(pds->GetPartition(0)); + VERIFY(rg != nullptr, "missing partition 0"); + VERIFY(vtkVector3i(rg->GetDimensions()) == vtkVector3i(3, 3, 3), + "incorrect dimensions, expected=3x3x3, got=%dx%dx%d", rg->GetDimensions()[0], + rg->GetDimensions()[1], rg->GetDimensions()[2]); + + return true; +} + +bool ValidateMeshTypeStructured() +{ + conduit_cpp::Node mesh; + conduit_cpp::BlueprintMesh::Example::basic("structured", 3, 3, 3, mesh); + auto data = Convert(mesh); + VERIFY(vtkPartitionedDataSet::SafeDownCast(data) != nullptr, + "incorrect data type, expected vtkPartitionedDataSet, got %s", vtkLogIdentifier(data)); + auto pds = vtkPartitionedDataSet::SafeDownCast(data); + VERIFY(pds->GetNumberOfPartitions() == 1, "incorrect number of partitions, expected 1, got %d", + pds->GetNumberOfPartitions()); + auto sg = vtkStructuredGrid::SafeDownCast(pds->GetPartition(0)); + VERIFY(sg != nullptr, "missing partition 0"); + VERIFY(vtkVector3i(sg->GetDimensions()) == vtkVector3i(3, 3, 3), + "incorrect dimensions, expected=3x3x3, got=%dx%dx%d", sg->GetDimensions()[0], + sg->GetDimensions()[1], sg->GetDimensions()[2]); + + return true; +} + +bool ValidateMeshTypeUnstructured() +{ + conduit_cpp::Node mesh; + // generate simple explicit tri-based 2d 'basic' mesh + conduit_cpp::BlueprintMesh::Example::basic("tris", 3, 3, 0, mesh); + + auto data = Convert(mesh); + VERIFY(vtkPartitionedDataSet::SafeDownCast(data) != nullptr, + "incorrect data type, expected vtkPartitionedDataSet, got %s", vtkLogIdentifier(data)); + auto pds = vtkPartitionedDataSet::SafeDownCast(data); + VERIFY(pds->GetNumberOfPartitions() == 1, "incorrect number of partitions, expected 1, got %d", + pds->GetNumberOfPartitions()); + auto ug = vtkUnstructuredGrid::SafeDownCast(pds->GetPartition(0)); + VERIFY(ug != nullptr, "missing partition 0"); + + VERIFY(ug->GetNumberOfPoints() == 9, "incorrect number of points, expected 9, got %lld", + ug->GetNumberOfPoints()); + VERIFY(ug->GetNumberOfCells() == 8, "incorrect number of cells, expected 8, got %lld", + ug->GetNumberOfCells()); + VERIFY(ug->GetCellData()->GetArray("field") != nullptr, "missing 'field' cell-data array"); + return true; +} + +bool CheckFieldDataMeshConversion(conduit_cpp::Node& mesh_node, int expected_number_of_arrays, + const std::string& expected_array_name, int expected_number_of_components, + std::vector expected_values) +{ + auto data = Convert(mesh_node); + auto field_data = data->GetFieldData(); + VERIFY(field_data->GetNumberOfArrays() == expected_number_of_arrays, + "incorrect number of arrays in field data, expected 0, got %d", + field_data->GetNumberOfArrays()); + + if (expected_number_of_arrays > 0) + { + auto field_array = field_data->GetAbstractArray(0); + + VERIFY(std::string(field_array->GetName()) == expected_array_name, + "wrong array name, expected \"integer_field_data\", got %s", field_array->GetName()); + VERIFY(field_array->GetNumberOfComponents() == expected_number_of_components, + "wrong number of component"); + VERIFY(static_cast(field_array->GetNumberOfTuples()) == expected_values.size(), + "wrong number of tuples"); + for (size_t i = 0; i < expected_values.size(); ++i) + { + VERIFY(field_array->GetVariantValue(i) == expected_values[i], "wrong value"); + } + } + + return true; +} + +bool ValidateFieldData() +{ + conduit_cpp::Node mesh; + conduit_cpp::BlueprintMesh::Example::basic("uniform", 3, 3, 3, mesh); + + auto field_data_node = mesh["state/fields"]; + + auto empty_field_data = field_data_node["empty_field_data"]; + VERIFY(CheckFieldDataMeshConversion(mesh, 0, empty_field_data.name(), 0, {}), + "Verification failed for empty field data."); + + field_data_node.remove(0); + auto integer_field_data = field_data_node["integer_field_data"]; + integer_field_data.set_int64(42); + VERIFY(CheckFieldDataMeshConversion(mesh, 1, integer_field_data.name(), 1, { 42 }), + "Verification failed for integer field data."); + + field_data_node.remove(0); + auto float_field_data = field_data_node["float_field_data"]; + float_field_data.set_float64(5.0); + VERIFY(CheckFieldDataMeshConversion(mesh, 1, float_field_data.name(), 1, { 5.0 }), + "Verification failed for float field data."); + + field_data_node.remove(0); + auto string_field_data = field_data_node["string_field_data"]; + string_field_data.set_string("test"); + VERIFY(CheckFieldDataMeshConversion(mesh, 1, string_field_data.name(), 1, { "test" }), + "Verification failed for string field data."); + + field_data_node.remove(0); + auto integer_vector_field_data = field_data_node["integer_vector_field_data"]; + integer_vector_field_data.set_int64_vector({ 1, 2, 3 }); + VERIFY(CheckFieldDataMeshConversion(mesh, 1, integer_vector_field_data.name(), 1, { 1, 2, 3 }), + "Verification failed for integer vector field data."); + + field_data_node.remove(0); + auto float_vector_field_data = field_data_node["float_vector_field_data"]; + float_vector_field_data.set_float64_vector({ 4.0, 5.0, 6.0 }); + VERIFY( + CheckFieldDataMeshConversion(mesh, 1, float_vector_field_data.name(), 1, { 4.0, 5.0, 6.0 }), + "Verification failed for float vector field data."); + + field_data_node.remove(0); + std::vector integer_buffer = { 123, 456, 789 }; + auto external_integer_vector_field_data = field_data_node["external_integer_vector"]; + external_integer_vector_field_data.set_external_int32_ptr( + integer_buffer.data(), integer_buffer.size()); + VERIFY(CheckFieldDataMeshConversion( + mesh, 1, external_integer_vector_field_data.name(), 1, { 123, 456, 789 }), + "Verification failed for external integer vector field data."); + + return true; +} +} + +int TestConduitSource(int, char*[]) +{ + return ValidateMeshTypeUniform() && ValidateMeshTypeRectilinear() && + ValidateMeshTypeStructured() && ValidateMeshTypeUnstructured() && ValidateFieldData() + ? EXIT_SUCCESS + : EXIT_FAILURE; +} diff --git a/IO/CatalystConduit/Testing/Cxx/TestDataObjectToConduit.cxx b/IO/CatalystConduit/Testing/Cxx/TestDataObjectToConduit.cxx new file mode 100644 index 000000000000..3d12e9a27658 --- /dev/null +++ b/IO/CatalystConduit/Testing/Cxx/TestDataObjectToConduit.cxx @@ -0,0 +1,801 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestDataObjectToConduit.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ + +#include "vtkDataObjectToConduit.h" + +#include + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +bool TestNonDataSetObject() +{ + conduit_cpp::Node node; + vtkNew table; + + auto previous_verbosity = vtkLogger::GetCurrentVerbosityCutoff(); + vtkLogger::SetStderrVerbosity(vtkLogger::VERBOSITY_OFF); + + bool is_table_supported = vtkDataObjectToConduit::FillConduitNode(table, node); + + vtkLogger::SetStderrVerbosity(previous_verbosity); + + return !is_table_supported; +} + +bool TestImageData() +{ + conduit_cpp::Node node; + vtkNew image; + + image->SetDimensions(2, 3, 1); + image->SetSpacing(10, 20, 30); + image->SetOrigin(-1, -2, -3); + image->AllocateScalars(VTK_INT, 1); + int* dims = image->GetDimensions(); + + for (int z = 0; z < dims[2]; z++) + { + for (int y = 0; y < dims[1]; y++) + { + for (int x = 0; x < dims[0]; x++) + { + image->SetScalarComponentFromFloat(x, y, z, 0, 2); + } + } + } + + bool is_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(image), node); + + if (!is_success) + { + std::cerr << "FillConduitNode failed for TestImageData" << std::endl; + return is_success; + } + + conduit_cpp::Node expected_node; + auto coords_node = expected_node["coordsets/coords"]; + coords_node["type"] = "uniform"; + coords_node["dims/i"] = image->GetDimensions()[0]; + coords_node["dims/j"] = image->GetDimensions()[1]; + coords_node["dims/k"] = image->GetDimensions()[2]; + coords_node["origin/x"] = image->GetOrigin()[0]; + coords_node["origin/y"] = image->GetOrigin()[1]; + coords_node["origin/z"] = image->GetOrigin()[2]; + coords_node["spacing/dx"] = image->GetSpacing()[0]; + coords_node["spacing/dy"] = image->GetSpacing()[1]; + coords_node["spacing/dz"] = image->GetSpacing()[2]; + + auto topologies_node = expected_node["topologies/mesh"]; + topologies_node["type"] = "uniform"; + topologies_node["coordset"] = "coords"; + + auto field_node = expected_node["fields/ImageScalars"]; + field_node["association"] = "vertex"; + field_node["topology"] = "mesh"; + field_node["volume_dependent"] = "false"; + field_node["values"] = std::vector{ 2, 2, 2, 2, 2, 2 }; + + conduit_cpp::Node diff_info; + bool are_nodes_different = node.diff(expected_node, diff_info, 1e-6); + if (are_nodes_different) + { + diff_info.print(); + } + + is_success = !are_nodes_different; + + return is_success; +} + +bool TestRectilinearGrid() +{ + conduit_cpp::Node node; + vtkNew rectilinear_grid; + + rectilinear_grid->SetDimensions(2, 3, 1); + + std::vector x_coordinates = { 0, 2 }; + vtkNew xArray; + xArray->SetArray(x_coordinates.data(), x_coordinates.size(), 1); + rectilinear_grid->SetXCoordinates(xArray); + + std::vector y_coordinates = { 0, 1, 2 }; + vtkNew yArray; + yArray->SetArray(y_coordinates.data(), y_coordinates.size(), 1); + rectilinear_grid->SetYCoordinates(yArray); + + std::vector z_coordinates = { 0 }; + vtkNew zArray; + zArray->SetArray(z_coordinates.data(), z_coordinates.size(), 1); + rectilinear_grid->SetZCoordinates(zArray); + + std::vector field_values = { 0, 0, 1, 2, 2, 4, 3, 6, 4, 8, 5, 10 }; + vtkNew fieldArray; + fieldArray->SetName("rectilinear_field"); + fieldArray->SetNumberOfComponents(2); + fieldArray->SetNumberOfTuples(6); + fieldArray->SetArray(field_values.data(), field_values.size(), 1); + + rectilinear_grid->GetPointData()->AddArray(fieldArray); + + bool is_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(rectilinear_grid), node); + + if (!is_success) + { + std::cerr << "FillConduitNode failed for TestRectilinearGrid" << std::endl; + return is_success; + } + + conduit_cpp::Node expected_node; + auto coords_node = expected_node["coordsets/coords"]; + coords_node["type"] = "rectilinear"; + coords_node["values/x"] = x_coordinates; + coords_node["values/y"] = y_coordinates; + coords_node["values/z"] = z_coordinates; + + auto topologies_node = expected_node["topologies/mesh"]; + topologies_node["type"] = "rectilinear"; + topologies_node["coordset"] = "coords"; + + auto field_node = expected_node["fields/rectilinear_field"]; + field_node["association"] = "vertex"; + field_node["topology"] = "mesh"; + field_node["volume_dependent"] = "false"; + field_node["values"] = field_values; + + conduit_cpp::Node diff_info; + bool are_nodes_different = node.diff(expected_node, diff_info, 1e-6); + if (are_nodes_different) + { + diff_info.print(); + } + + is_success = !are_nodes_different; + + return is_success; +} + +bool TestStructuredGrid() +{ + conduit_cpp::Node node; + vtkNew structured_grid; + + vtkIdType nx = 2, ny = 3, nz = 2; + auto dataSize = nx * ny * nz; + + vtkNew pointValues; + pointValues->SetNumberOfComponents(1); + pointValues->SetNumberOfTuples(dataSize); + for (vtkIdType i = 0; i < dataSize; ++i) + { + pointValues->SetValue(i, i); + } + pointValues->SetName("point_field"); + + auto numberOfCells = (nx - 1) * (ny - 1) * (nz - 1); + vtkNew cellValues; + cellValues->SetNumberOfTuples(numberOfCells); + for (vtkIdType i = 0; i < numberOfCells; ++i) + { + cellValues->SetValue(i, i * 2.0); + } + cellValues->SetName("cell_field"); + + vtkNew points; + auto x = 0.0; + auto y = 0.0; + auto z = 0.0; + for (unsigned int k = 0; k < nz; k++) + { + z += 2.0; + for (unsigned int j = 0; j < ny; j++) + { + y += 1.0; + for (unsigned int i = 0; i < nx; i++) + { + x += .5; + points->InsertNextPoint(x, y, z); + } + } + } + + structured_grid->SetDimensions(static_cast(nx), static_cast(ny), static_cast(nz)); + structured_grid->SetPoints(points); + structured_grid->GetCellData()->SetScalars(cellValues); + structured_grid->GetPointData()->SetScalars(pointValues); + + bool is_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(structured_grid), node); + + if (!is_success) + { + std::cerr << "FillConduitNode failed for TestStructuredGrid" << std::endl; + return is_success; + } + + conduit_cpp::Node expected_node; + auto coords_node = expected_node["coordsets/coords"]; + coords_node["type"] = "explicit"; + coords_node["values/x"] = + std::vector{ 0.5, 1, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5, 6.0 }; + coords_node["values/y"] = std::vector{ 1, 1, 2, 2, 3, 3, 4, 4, 5, 5, 6, 6 }; + coords_node["values/z"] = std::vector{ 2, 2, 2, 2, 2, 2, 4, 4, 4, 4, 4, 4 }; + + auto topologies_node = expected_node["topologies/mesh"]; + topologies_node["type"] = "structured"; + topologies_node["coordset"] = "coords"; + topologies_node["elements/dims/i"] = 2; + topologies_node["elements/dims/j"] = 3; + topologies_node["elements/dims/k"] = 2; + + auto point_field_node = expected_node["fields/point_field"]; + point_field_node["association"] = "vertex"; + point_field_node["topology"] = "mesh"; + point_field_node["volume_dependent"] = "false"; + point_field_node["values"] = std::vector{ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 }; + + auto cell_field_node = expected_node["fields/cell_field"]; + cell_field_node["association"] = "element"; + cell_field_node["topology"] = "mesh"; + cell_field_node["volume_dependent"] = "false"; + cell_field_node["values"] = std::vector{ 0, 2 }; + + conduit_cpp::Node diff_info; + bool are_nodes_different = node.diff(expected_node, diff_info, 1e-6); + if (are_nodes_different) + { + diff_info.print(); + } + + is_success = !are_nodes_different; + + return is_success; +} + +static double unstructured_grid_points_coordinates[27][3] = { { 0, 0, 0 }, { 1, 0, 0 }, { 2, 0, 0 }, + { 0, 1, 0 }, { 1, 1, 0 }, { 2, 1, 0 }, { 0, 0, 1 }, { 1, 0, 1 }, { 2, 0, 1 }, { 0, 1, 1 }, + { 1, 1, 1 }, { 2, 1, 1 }, { 0, 1, 2 }, { 1, 1, 2 }, { 2, 1, 2 }, { 0, 1, 3 }, { 1, 1, 3 }, + { 2, 1, 3 }, { 0, 1, 4 }, { 1, 1, 4 }, { 2, 1, 4 }, { 0, 1, 5 }, { 1, 1, 5 }, { 2, 1, 5 }, + { 0, 1, 6 }, { 1, 1, 6 }, { 2, 1, 6 } }; + +static struct +{ + VTKCellType cell_type; + std::vector connectivity; +} unstructured_grid_cell_connectivities[] = { { VTK_HEXAHEDRON, { 0, 1, 4, 3, 6, 7, 10, 9 } }, + { VTK_HEXAHEDRON, { 1, 2, 5, 4, 7, 8, 11, 10 } }, { VTK_TETRA, { 6, 10, 9, 12 } }, + { VTK_TETRA, { 8, 11, 10, 14 } }, { VTK_POLYGON, { 16, 17, 14, 13, 12, 15 } }, + { VTK_TRIANGLE_STRIP, { 18, 15, 19, 16, 20, 17 } }, { VTK_QUAD, { 22, 23, 20, 19 } }, + { VTK_TRIANGLE, { 21, 22, 18 } }, { VTK_TRIANGLE, { 22, 19, 18 } }, { VTK_LINE, { 23, 26 } }, + { VTK_LINE, { 21, 24 } }, { VTK_VERTEX, { 25 } } }; + +bool TestMixedShapedUnstructuredGrid() +{ + conduit_cpp::Node node; + vtkNew unstructured_grid; + + vtkNew points; + for (int i = 0; i < 27; i++) + { + points->InsertPoint(i, unstructured_grid_points_coordinates[i]); + } + unstructured_grid->SetPoints(points); + + unstructured_grid->Allocate(100); + for (auto const& connectivity : unstructured_grid_cell_connectivities) + { + unstructured_grid->InsertNextCell( + connectivity.cell_type, connectivity.connectivity.size(), connectivity.connectivity.data()); + } + + auto previous_verbosity = vtkLogger::GetCurrentVerbosityCutoff(); + vtkLogger::SetStderrVerbosity(vtkLogger::VERBOSITY_OFF); + + bool is_filling_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(unstructured_grid), node); + + vtkLogger::SetStderrVerbosity(previous_verbosity); + + // Not supported for now. + return !is_filling_success; +} + +bool TestHexahedronUnstructuredGrid() +{ + vtkNew unstructured_grid; + vtkNew points; + for (int i = 0; i < 27; i++) + { + points->InsertPoint(i, unstructured_grid_points_coordinates[i]); + } + unstructured_grid->SetPoints(points); + unstructured_grid->Allocate(100); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[0].cell_type, + unstructured_grid_cell_connectivities[0].connectivity.size(), + unstructured_grid_cell_connectivities[0].connectivity.data()); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[1].cell_type, + unstructured_grid_cell_connectivities[1].connectivity.size(), + unstructured_grid_cell_connectivities[1].connectivity.data()); + + vtkNew cellValues; + cellValues->SetNumberOfTuples(2); + cellValues->SetValue(0, 10); + cellValues->SetValue(1, -10); + cellValues->SetName("cell_field"); + unstructured_grid->GetCellData()->AddArray(cellValues); + + conduit_cpp::Node node; + bool is_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(unstructured_grid), node); + + if (!is_success) + { + std::cerr << "FillConduitNode failed for TestHexahedronUnstructuredGrid" << std::endl; + return is_success; + } + + conduit_cpp::Node expected_node; + auto coords_node = expected_node["coordsets/coords"]; + coords_node["type"] = "explicit"; + coords_node["values/x"] = std::vector{ 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, + 2, 0, 1, 2, 0, 1, 2, 0, 1, 2 }; + coords_node["values/y"] = std::vector{ 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 }; + coords_node["values/z"] = std::vector{ 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 2, 2, 2, 3, 3, + 3, 4, 4, 4, 5, 5, 5, 6, 6, 6 }; + + auto topologies_node0 = expected_node["topologies/mesh"]; + topologies_node0["type"] = "unstructured"; + topologies_node0["coordset"] = "coords"; + topologies_node0["elements/shape"] = "hex"; + if (unstructured_grid->GetCells()->IsStorage64Bit()) + { + topologies_node0["elements/connectivity"] = + std::vector{ 0, 1, 4, 3, 6, 7, 10, 9, 1, 2, 5, 4, 7, 8, 11, 10 }; + } + else + { + topologies_node0["elements/connectivity"] = + std::vector{ 0, 1, 4, 3, 6, 7, 10, 9, 1, 2, 5, 4, 7, 8, 11, 10 }; + } + + auto cell_field_node = expected_node["fields/cell_field"]; + cell_field_node["association"] = "element"; + cell_field_node["topology"] = "mesh"; + cell_field_node["volume_dependent"] = "false"; + cell_field_node["values"] = std::vector{ 10, -10 }; + + conduit_cpp::Node diff_info; + bool are_nodes_different = node.diff(expected_node, diff_info, 1e-6); + if (are_nodes_different) + { + diff_info.print(); + } + + is_success = !are_nodes_different; + + return is_success; +} + +bool TestTetrahedronUnstructuredGrid() +{ + vtkNew unstructured_grid; + vtkNew points; + for (int i = 0; i < 27; i++) + { + points->InsertPoint(i, unstructured_grid_points_coordinates[i]); + } + unstructured_grid->SetPoints(points); + unstructured_grid->Allocate(100); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[2].cell_type, + unstructured_grid_cell_connectivities[2].connectivity.size(), + unstructured_grid_cell_connectivities[2].connectivity.data()); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[3].cell_type, + unstructured_grid_cell_connectivities[3].connectivity.size(), + unstructured_grid_cell_connectivities[3].connectivity.data()); + + vtkNew cellValues; + cellValues->SetNumberOfTuples(2); + cellValues->SetValue(0, 10); + cellValues->SetValue(1, -10); + cellValues->SetName("cell_field"); + unstructured_grid->GetCellData()->AddArray(cellValues); + + conduit_cpp::Node node; + bool is_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(unstructured_grid), node); + + if (!is_success) + { + std::cerr << "FillConduitNode failed for TestTetrahedronUnstructuredGrid" << std::endl; + return is_success; + } + + conduit_cpp::Node expected_node; + auto coords_node = expected_node["coordsets/coords"]; + coords_node["type"] = "explicit"; + coords_node["values/x"] = std::vector{ 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, + 2, 0, 1, 2, 0, 1, 2, 0, 1, 2 }; + coords_node["values/y"] = std::vector{ 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 }; + coords_node["values/z"] = std::vector{ 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 2, 2, 2, 3, 3, + 3, 4, 4, 4, 5, 5, 5, 6, 6, 6 }; + + auto topologies_node = expected_node["topologies/mesh"]; + topologies_node["type"] = "unstructured"; + topologies_node["coordset"] = "coords"; + topologies_node["elements/shape"] = "tet"; + if (unstructured_grid->GetCells()->IsStorage64Bit()) + { + topologies_node["elements/connectivity"] = + std::vector{ 6, 10, 9, 12, 8, 11, 10, 14 }; + } + else + { + topologies_node["elements/connectivity"] = + std::vector{ 6, 10, 9, 12, 8, 11, 10, 14 }; + } + + auto cell_field_node = expected_node["fields/cell_field"]; + cell_field_node["association"] = "element"; + cell_field_node["topology"] = "mesh"; + cell_field_node["volume_dependent"] = "false"; + cell_field_node["values"] = std::vector{ 10, -10 }; + + conduit_cpp::Node diff_info; + bool are_nodes_different = node.diff(expected_node, diff_info, 1e-6); + if (are_nodes_different) + { + diff_info.print(); + } + + is_success = !are_nodes_different; + + return is_success; +} + +bool TestQuadUnstructuredGrid() +{ + vtkNew unstructured_grid; + vtkNew points; + for (int i = 0; i < 27; i++) + { + points->InsertPoint(i, unstructured_grid_points_coordinates[i]); + } + unstructured_grid->SetPoints(points); + unstructured_grid->Allocate(100); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[6].cell_type, + unstructured_grid_cell_connectivities[6].connectivity.size(), + unstructured_grid_cell_connectivities[6].connectivity.data()); + + vtkNew pointValues; + pointValues->SetNumberOfTuples(4); + pointValues->SetValue(0, 10); + pointValues->SetValue(1, -10); + pointValues->SetValue(2, 20); + pointValues->SetValue(3, -20); + pointValues->SetName("point_field"); + unstructured_grid->GetPointData()->AddArray(pointValues); + + conduit_cpp::Node node; + bool is_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(unstructured_grid), node); + + if (!is_success) + { + std::cerr << "FillConduitNode failed for TestQuadUnstructuredGrid" << std::endl; + return is_success; + } + + conduit_cpp::Node expected_node; + auto coords_node = expected_node["coordsets/coords"]; + coords_node["type"] = "explicit"; + coords_node["values/x"] = std::vector{ 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, + 2, 0, 1, 2, 0, 1, 2, 0, 1, 2 }; + coords_node["values/y"] = std::vector{ 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 }; + coords_node["values/z"] = std::vector{ 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 2, 2, 2, 3, 3, + 3, 4, 4, 4, 5, 5, 5, 6, 6, 6 }; + + auto topologies_node = expected_node["topologies/mesh"]; + topologies_node["type"] = "unstructured"; + topologies_node["coordset"] = "coords"; + topologies_node["elements/shape"] = "quad"; + if (unstructured_grid->GetCells()->IsStorage64Bit()) + { + topologies_node["elements/connectivity"] = std::vector{ 22, 23, 20, 19 }; + } + else + { + topologies_node["elements/connectivity"] = std::vector{ 22, 23, 20, 19 }; + } + + auto cell_field_node = expected_node["fields/point_field"]; + cell_field_node["association"] = "vertex"; + cell_field_node["topology"] = "mesh"; + cell_field_node["volume_dependent"] = "false"; + cell_field_node["values"] = std::vector{ 10, -10, 20, -20 }; + + conduit_cpp::Node diff_info; + bool are_nodes_different = node.diff(expected_node, diff_info, 1e-6); + if (are_nodes_different) + { + diff_info.print(); + } + + is_success = !are_nodes_different; + + return is_success; +} + +bool TestTriangleUnstructuredGrid() +{ + vtkNew unstructured_grid; + vtkNew points; + for (int i = 0; i < 27; i++) + { + points->InsertPoint(i, unstructured_grid_points_coordinates[i]); + } + unstructured_grid->SetPoints(points); + unstructured_grid->Allocate(100); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[7].cell_type, + unstructured_grid_cell_connectivities[7].connectivity.size(), + unstructured_grid_cell_connectivities[7].connectivity.data()); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[8].cell_type, + unstructured_grid_cell_connectivities[8].connectivity.size(), + unstructured_grid_cell_connectivities[8].connectivity.data()); + + vtkNew cellValues; + cellValues->SetNumberOfTuples(2); + cellValues->SetValue(0, 10); + cellValues->SetValue(1, -10); + cellValues->SetName("cell_field"); + unstructured_grid->GetCellData()->AddArray(cellValues); + + conduit_cpp::Node node; + bool is_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(unstructured_grid), node); + + if (!is_success) + { + std::cerr << "FillConduitNode failed for TestTriangleUnstructuredGrid" << std::endl; + return is_success; + } + + conduit_cpp::Node expected_node; + auto coords_node = expected_node["coordsets/coords"]; + coords_node["type"] = "explicit"; + coords_node["values/x"] = std::vector{ 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, + 2, 0, 1, 2, 0, 1, 2, 0, 1, 2 }; + coords_node["values/y"] = std::vector{ 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 }; + coords_node["values/z"] = std::vector{ 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 2, 2, 2, 3, 3, + 3, 4, 4, 4, 5, 5, 5, 6, 6, 6 }; + + auto topologies_node = expected_node["topologies/mesh"]; + topologies_node["type"] = "unstructured"; + topologies_node["coordset"] = "coords"; + topologies_node["elements/shape"] = "tri"; + if (unstructured_grid->GetCells()->IsStorage64Bit()) + { + topologies_node["elements/connectivity"] = std::vector{ 21, 22, 18, 22, 19, 18 }; + } + else + { + topologies_node["elements/connectivity"] = std::vector{ 21, 22, 18, 22, 19, 18 }; + } + + auto cell_field_node = expected_node["fields/cell_field"]; + cell_field_node["association"] = "element"; + cell_field_node["topology"] = "mesh"; + cell_field_node["volume_dependent"] = "false"; + cell_field_node["values"] = std::vector{ 10, -10 }; + + conduit_cpp::Node diff_info; + bool are_nodes_different = node.diff(expected_node, diff_info, 1e-6); + if (are_nodes_different) + { + diff_info.print(); + } + + is_success = !are_nodes_different; + + return is_success; +} + +bool TestLineUnstructuredGrid() +{ + vtkNew unstructured_grid; + vtkNew points; + for (int i = 0; i < 27; i++) + { + points->InsertPoint(i, unstructured_grid_points_coordinates[i]); + } + unstructured_grid->SetPoints(points); + unstructured_grid->Allocate(100); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[9].cell_type, + unstructured_grid_cell_connectivities[9].connectivity.size(), + unstructured_grid_cell_connectivities[9].connectivity.data()); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[10].cell_type, + unstructured_grid_cell_connectivities[10].connectivity.size(), + unstructured_grid_cell_connectivities[10].connectivity.data()); + + vtkNew cellValues; + cellValues->SetNumberOfTuples(2); + cellValues->SetValue(0, 10); + cellValues->SetValue(1, -10); + cellValues->SetName("cell_field"); + unstructured_grid->GetCellData()->AddArray(cellValues); + + conduit_cpp::Node node; + bool is_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(unstructured_grid), node); + + if (!is_success) + { + std::cerr << "FillConduitNode failed for TestLineUnstructuredGrid" << std::endl; + return is_success; + } + + conduit_cpp::Node expected_node; + auto coords_node = expected_node["coordsets/coords"]; + coords_node["type"] = "explicit"; + coords_node["values/x"] = std::vector{ 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, + 2, 0, 1, 2, 0, 1, 2, 0, 1, 2 }; + coords_node["values/y"] = std::vector{ 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 }; + coords_node["values/z"] = std::vector{ 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 2, 2, 2, 3, 3, + 3, 4, 4, 4, 5, 5, 5, 6, 6, 6 }; + + auto topologies_node = expected_node["topologies/mesh"]; + topologies_node["type"] = "unstructured"; + topologies_node["coordset"] = "coords"; + topologies_node["elements/shape"] = "line"; + if (unstructured_grid->GetCells()->IsStorage64Bit()) + { + topologies_node["elements/connectivity"] = std::vector{ 23, 26, 21, 24 }; + } + else + { + topologies_node["elements/connectivity"] = std::vector{ 23, 26, 21, 24 }; + } + + auto cell_field_node = expected_node["fields/cell_field"]; + cell_field_node["association"] = "element"; + cell_field_node["topology"] = "mesh"; + cell_field_node["volume_dependent"] = "false"; + cell_field_node["values"] = std::vector{ 10, -10 }; + + conduit_cpp::Node diff_info; + bool are_nodes_different = node.diff(expected_node, diff_info, 1e-6); + if (are_nodes_different) + { + diff_info.print(); + } + + is_success = !are_nodes_different; + + return is_success; +} + +bool TestPointUnstructuredGrid() +{ + vtkNew unstructured_grid; + vtkNew points; + for (int i = 0; i < 27; i++) + { + points->InsertPoint(i, unstructured_grid_points_coordinates[i]); + } + unstructured_grid->SetPoints(points); + unstructured_grid->Allocate(100); + unstructured_grid->InsertNextCell(unstructured_grid_cell_connectivities[11].cell_type, + unstructured_grid_cell_connectivities[11].connectivity.size(), + unstructured_grid_cell_connectivities[11].connectivity.data()); + + vtkNew cellValues; + cellValues->SetNumberOfTuples(1); + cellValues->SetValue(0, 10); + cellValues->SetName("cell_field"); + unstructured_grid->GetCellData()->AddArray(cellValues); + + conduit_cpp::Node node; + bool is_success = + vtkDataObjectToConduit::FillConduitNode(vtkDataObject::SafeDownCast(unstructured_grid), node); + + if (!is_success) + { + std::cerr << "FillConduitNode failed for TestPointUnstructuredGrid" << std::endl; + return is_success; + } + + conduit_cpp::Node expected_node; + auto coords_node = expected_node["coordsets/coords"]; + coords_node["type"] = "explicit"; + coords_node["values/x"] = std::vector{ 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, + 2, 0, 1, 2, 0, 1, 2, 0, 1, 2 }; + coords_node["values/y"] = std::vector{ 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 }; + coords_node["values/z"] = std::vector{ 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 2, 2, 2, 3, 3, + 3, 4, 4, 4, 5, 5, 5, 6, 6, 6 }; + + auto topologies_node = expected_node["topologies/mesh"]; + topologies_node["type"] = "unstructured"; + topologies_node["coordset"] = "coords"; + topologies_node["elements/shape"] = "point"; + if (unstructured_grid->GetCells()->IsStorage64Bit()) + { + topologies_node["elements/connectivity"] = std::vector{ 25 }; + } + else + { + topologies_node["elements/connectivity"] = std::vector{ 25 }; + } + + auto cell_field_node = expected_node["fields/cell_field"]; + cell_field_node["association"] = "element"; + cell_field_node["topology"] = "mesh"; + cell_field_node["volume_dependent"] = "false"; + cell_field_node["values"] = std::vector{ 10 }; + + conduit_cpp::Node diff_info; + bool are_nodes_different = node.diff(expected_node, diff_info, 1e-6); + if (are_nodes_different) + { + diff_info.print(); + } + + is_success = !are_nodes_different; + + return is_success; +} + +bool TestUnstructuredGrid() +{ + bool is_success = true; + + is_success &= TestMixedShapedUnstructuredGrid(); + is_success &= TestHexahedronUnstructuredGrid(); + is_success &= TestTetrahedronUnstructuredGrid(); + is_success &= TestQuadUnstructuredGrid(); + is_success &= TestTriangleUnstructuredGrid(); + is_success &= TestLineUnstructuredGrid(); + is_success &= TestPointUnstructuredGrid(); + + return is_success; +} + +int TestDataObjectToConduit(int, char*[]) +{ + bool is_success = true; + + is_success &= TestNonDataSetObject(); + is_success &= TestImageData(); + is_success &= TestRectilinearGrid(); + is_success &= TestStructuredGrid(); + is_success &= TestUnstructuredGrid(); + + return is_success ? EXIT_SUCCESS : EXIT_FAILURE; +} diff --git a/IO/CatalystConduit/vtk.module b/IO/CatalystConduit/vtk.module new file mode 100644 index 000000000000..21d699cd00da --- /dev/null +++ b/IO/CatalystConduit/vtk.module @@ -0,0 +1,15 @@ +NAME + VTK::IOCatalystConduit +LIBRARY_NAME + vtkIOCatalystConduit +DESCRIPTION + Catalyst implementation for VTK, including Conduit to/from VTK conversion. +KIT + VTK::IO +DEPENDS + VTK::CommonDataModel + VTK::CommonExecutionModel +PRIVATE_DEPENDS + VTK::FiltersCore +TEST_DEPENDS + VTK::TestingCore diff --git a/IO/CatalystConduit/vtkConduitArrayUtilities.cxx b/IO/CatalystConduit/vtkConduitArrayUtilities.cxx new file mode 100644 index 000000000000..fdd0ece3f690 --- /dev/null +++ b/IO/CatalystConduit/vtkConduitArrayUtilities.cxx @@ -0,0 +1,544 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkConduitArrayUtilities.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +#include "vtkConduitArrayUtilities.h" + +#include "vtkArrayDispatch.h" +#include "vtkCellArray.h" +#include "vtkLogger.h" +#include "vtkObjectFactory.h" +#include "vtkSOADataArrayTemplate.h" +#include "vtkTypeFloat32Array.h" +#include "vtkTypeFloat64Array.h" +#include "vtkTypeInt16Array.h" +#include "vtkTypeInt32Array.h" +#include "vtkTypeInt64Array.h" +#include "vtkTypeInt8Array.h" +#include "vtkTypeUInt16Array.h" +#include "vtkTypeUInt32Array.h" +#include "vtkTypeUInt64Array.h" +#include "vtkTypeUInt8Array.h" + +#include +#include + +#include + +namespace internals +{ + +using AOSArrays = vtkTypeList::Unique< + vtkTypeList::Create, vtkAOSDataArrayTemplate, + vtkAOSDataArrayTemplate, vtkAOSDataArrayTemplate, + vtkAOSDataArrayTemplate, vtkAOSDataArrayTemplate, + vtkAOSDataArrayTemplate, vtkAOSDataArrayTemplate, + vtkAOSDataArrayTemplate, vtkAOSDataArrayTemplate>>::Result; + +using SOAArrays = vtkTypeList::Unique< + vtkTypeList::Create, vtkSOADataArrayTemplate, + vtkSOADataArrayTemplate, vtkSOADataArrayTemplate, + vtkSOADataArrayTemplate, vtkSOADataArrayTemplate, + vtkSOADataArrayTemplate, vtkSOADataArrayTemplate, + vtkSOADataArrayTemplate, vtkSOADataArrayTemplate>>::Result; + +bool is_contiguous(const conduit_cpp::Node& node) +{ + if (node.is_contiguous()) + { + return true; + } + conduit_index_t nchildren = node.number_of_children(); + for (auto i = 0; i < nchildren; ++i) + { + auto child = node[i]; + if (!child.is_contiguous()) + { + return false; + } + } + return true; +} + +template +vtkSmartPointer CreateAOSArray( + vtkIdType number_of_tuples, int number_of_components, const typename ArrayT::ValueType* raw_ptr) +{ + auto array = vtkSmartPointer::New(); + array->SetNumberOfComponents(number_of_components); + array->SetArray(const_cast(raw_ptr), + number_of_tuples * number_of_components, /*save=*/1); + return array; +} + +template +vtkSmartPointer> CreateSOArray( + vtkIdType number_of_tuples, int number_of_components, const std::vector& raw_ptrs) +{ + auto array = vtkSmartPointer>::New(); + array->SetNumberOfComponents(number_of_components); + for (int cc = 0; cc < number_of_components; ++cc) + { + array->SetArray(cc, reinterpret_cast(raw_ptrs.at(cc)), number_of_tuples, + /*updateMaxId=*/true, /*save*/ true); + } + return array; +} + +//---------------------------------------------------------------------------- +// internal: change components helper. +struct ChangeComponentsAOSImpl +{ + vtkDataArray* Input; + template + void operator()(ArrayT* output) + { + using ValueType = typename ArrayT::ValueType; + ArrayT* input = vtkArrayDownCast(this->Input); + const int numComps = std::max(input->GetNumberOfComponents(), output->GetNumberOfComponents()); + ValueType* tuple = new ValueType[numComps]; + std::fill(tuple, tuple + numComps, static_cast(0)); + for (vtkIdType cc = 0, max = input->GetNumberOfTuples(); cc < max; ++cc) + { + input->GetTypedTuple(cc, tuple); + output->SetTypedTuple(cc, tuple); + } + delete[] tuple; + } +}; + +//---------------------------------------------------------------------------- +// internal: change components. +static vtkSmartPointer ChangeComponentsAOS(vtkDataArray* array, int num_components) +{ + vtkSmartPointer result; + result.TakeReference(array->NewInstance()); + result->SetName(array->GetName()); + result->SetNumberOfComponents(num_components); + result->SetNumberOfTuples(array->GetNumberOfTuples()); + + ChangeComponentsAOSImpl worker{ array }; + using Dispatch = vtkArrayDispatch::DispatchByArray; + if (!Dispatch::Execute(result, worker)) + { + std::runtime_error("Failed to strip extra components from array!"); + } + return result; +} + +struct ChangeComponentsSOAImpl +{ + int Target; + + template + void operator()(vtkSOADataArrayTemplate* array) + { + const auto numTuples = array->GetNumberOfTuples(); + const auto numComps = array->GetNumberOfComponents(); + array->SetNumberOfComponents(this->Target); + + ValueT* buffer = new ValueT[numTuples]; + std::fill_n(buffer, numTuples, 0); + + for (int cc = numComps; cc < this->Target; ++cc) + { + array->SetArray(cc, buffer, numTuples, /*updateMaxId=*/true, + /*save=*/cc == numComps, /*deletMethod*/ vtkAbstractArray::VTK_DATA_ARRAY_DELETE); + } + } +}; +//---------------------------------------------------------------------------- +static vtkSmartPointer ChangeComponentsSOA(vtkDataArray* array, int num_components) +{ + if (array->GetNumberOfComponents() > num_components) + { + array->SetNumberOfComponents(num_components); + return array; + } + + ChangeComponentsSOAImpl worker{ num_components }; + using Dispatch = vtkArrayDispatch::DispatchByArray; + if (!Dispatch::Execute(array, worker)) + { + std::runtime_error("Failed to strip extra components from array!"); + } + return array; +} + +//---------------------------------------------------------------------------- +conduit_cpp::DataType::Id GetTypeId(conduit_cpp::DataType::Id type, bool force_signed) +{ + if (!force_signed) + { + return type; + } + switch (type) + { + case conduit_cpp::DataType::Id::uint8: + return conduit_cpp::DataType::Id::int8; + + case conduit_cpp::DataType::Id::uint16: + return conduit_cpp::DataType::Id::int16; + + case conduit_cpp::DataType::Id::uint32: + return conduit_cpp::DataType::Id::int32; + + case conduit_cpp::DataType::Id::uint64: + return conduit_cpp::DataType::Id::int64; + + default: + return type; + } +} + +} // internals + +vtkStandardNewMacro(vtkConduitArrayUtilities); +//---------------------------------------------------------------------------- +vtkConduitArrayUtilities::vtkConduitArrayUtilities() = default; + +//---------------------------------------------------------------------------- +vtkConduitArrayUtilities::~vtkConduitArrayUtilities() = default; + +//---------------------------------------------------------------------------- +vtkSmartPointer vtkConduitArrayUtilities::MCArrayToVTKArray( + const conduit_node* mcarray, const std::string& arrayname) +{ + if (auto array = vtkConduitArrayUtilities::MCArrayToVTKArray(mcarray)) + { + array->SetName(arrayname.c_str()); + return array; + } + return nullptr; +} + +//---------------------------------------------------------------------------- +vtkSmartPointer vtkConduitArrayUtilities::MCArrayToVTKArray( + const conduit_node* mcarray) +{ + return vtkConduitArrayUtilities::MCArrayToVTKArrayImpl(mcarray, false); +} + +//---------------------------------------------------------------------------- +vtkSmartPointer vtkConduitArrayUtilities::MCArrayToVTKArrayImpl( + const conduit_node* c_mcarray, bool force_signed) +{ + // XXX(const-correctness): This should really be `const Node`, but is used + // non-const in the `set_external` below. + conduit_cpp::Node mcarray = conduit_cpp::cpp_node(const_cast(c_mcarray)); + + conduit_cpp::Node info; + if (!conduit_cpp::BlueprintMcArray::verify(mcarray, info)) + { + // in some-cases, this may directly be an array of numeric values; is so, handle that. + if (mcarray.dtype().is_number()) + { + conduit_cpp::Node temp; + temp.append().set_external(mcarray); + return vtkConduitArrayUtilities::MCArrayToVTKArrayImpl( + conduit_cpp::c_node(&temp), force_signed); + } + else + { + vtkLogF(ERROR, "invalid node of type '%s'", mcarray.dtype().name().c_str()); + return nullptr; + } + } + + const int number_of_components = mcarray.number_of_children(); + if (number_of_components <= 0) + { + vtkLogF(ERROR, "invalid number of components '%d'", number_of_components); + return nullptr; + } + + // confirm that all components have same type. we don't support mixed component types currently. + // we can easily by deep copying, but we won't until needed. + + for (conduit_index_t cc = 1; cc < mcarray.number_of_children(); ++cc) + { + const conduit_cpp::DataType dtype0 = mcarray.child(0).dtype(); + const conduit_cpp::DataType dtypeCC = mcarray.child(cc).dtype(); + if (dtype0.id() != dtypeCC.id()) + { + vtkLogF(ERROR, + "mismatched component types for component 0 (%s) and %d (%s); currently not supported.", + dtype0.name().c_str(), static_cast(cc), dtypeCC.name().c_str()); + return nullptr; + } + } + + if (conduit_cpp::BlueprintMcArray::is_interleaved(mcarray)) + { + return vtkConduitArrayUtilities::MCArrayToVTKAOSArray( + conduit_cpp::c_node(&mcarray), force_signed); + } + else if (internals::is_contiguous(mcarray)) + { + return vtkConduitArrayUtilities::MCArrayToVTKSOAArray( + conduit_cpp::c_node(&mcarray), force_signed); + } + else if (mcarray.dtype().number_of_elements() == 1) + { + return vtkConduitArrayUtilities::MCArrayToVTKSOAArray( + conduit_cpp::c_node(&mcarray), force_signed); + } + else + { + // TODO: we can do a deep-copy in this case, so we can still handle it quite easily when needed. + vtkLogF(ERROR, "unsupported array layout."); + return nullptr; + } + + return nullptr; +} + +//---------------------------------------------------------------------------- +vtkSmartPointer vtkConduitArrayUtilities::MCArrayToVTKAOSArray( + const conduit_node* c_mcarray, bool force_signed) +{ + const conduit_cpp::Node mcarray = conduit_cpp::cpp_node(const_cast(c_mcarray)); + auto& child0 = mcarray.child(0); + const conduit_cpp::DataType dtype0 = child0.dtype(); + + const int num_components = static_cast(mcarray.number_of_children()); + const vtkIdType num_tuples = static_cast(dtype0.number_of_elements()); + + switch (internals::GetTypeId(dtype0.id(), force_signed)) + { + case conduit_cpp::DataType::Id::int8: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + case conduit_cpp::DataType::Id::int16: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + case conduit_cpp::DataType::Id::int32: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + case conduit_cpp::DataType::Id::int64: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + case conduit_cpp::DataType::Id::uint8: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + case conduit_cpp::DataType::Id::uint16: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + case conduit_cpp::DataType::Id::uint32: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + case conduit_cpp::DataType::Id::uint64: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + case conduit_cpp::DataType::Id::float32: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + case conduit_cpp::DataType::Id::float64: + return internals::CreateAOSArray(num_tuples, num_components, + reinterpret_cast(child0.element_ptr(0))); + + default: + vtkLogF(ERROR, "unsupported data type '%s' ", dtype0.name().c_str()); + return nullptr; + } +} + +//---------------------------------------------------------------------------- +vtkSmartPointer vtkConduitArrayUtilities::MCArrayToVTKSOAArray( + const conduit_node* c_mcarray, bool force_signed) +{ + const conduit_cpp::Node mcarray = conduit_cpp::cpp_node(const_cast(c_mcarray)); + const conduit_cpp::DataType dtype0 = mcarray.child(0).dtype(); + const int num_components = static_cast(mcarray.number_of_children()); + const vtkIdType num_tuples = static_cast(dtype0.number_of_elements()); + + std::vector ptrs; + ptrs.reserve(num_components); + for (int cc = 0; cc < num_components; ++cc) + { + ptrs.push_back(const_cast(mcarray.child(cc).element_ptr(0))); + } + + switch (internals::GetTypeId(dtype0.id(), force_signed)) + { + case conduit_cpp::DataType::Id::int8: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + case conduit_cpp::DataType::Id::int16: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + case conduit_cpp::DataType::Id::int32: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + case conduit_cpp::DataType::Id::int64: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + case conduit_cpp::DataType::Id::uint8: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + case conduit_cpp::DataType::Id::uint16: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + case conduit_cpp::DataType::Id::uint32: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + case conduit_cpp::DataType::Id::uint64: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + case conduit_cpp::DataType::Id::float32: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + case conduit_cpp::DataType::Id::float64: + return internals::CreateSOArray(num_tuples, num_components, ptrs); + + default: + vtkLogF(ERROR, "unsupported data type '%s' ", dtype0.name().c_str()); + return nullptr; + } +} + +//---------------------------------------------------------------------------- +vtkSmartPointer vtkConduitArrayUtilities::SetNumberOfComponents( + vtkDataArray* array, int num_components) +{ + if (array == nullptr || array->GetNumberOfComponents() == num_components) + { + return array; + } + + if (array->HasStandardMemoryLayout()) + { + return internals::ChangeComponentsAOS(array, num_components); + } + else + { + return internals::ChangeComponentsSOA(array, num_components); + } +} + +struct NoOp +{ + template + void operator()(T*) + { + } +}; + +//---------------------------------------------------------------------------- +vtkSmartPointer vtkConduitArrayUtilities::MCArrayToVTKCellArray( + vtkIdType cellSize, const conduit_node* mcarray) +{ + auto array = vtkConduitArrayUtilities::MCArrayToVTKArrayImpl(mcarray, /*force_signed*/ true); + if (!array) + { + return nullptr; + } + + // now the array matches the type accepted by vtkCellArray (in most cases). + vtkNew cellArray; + cellArray->SetData(cellSize, array); + return cellArray; +} + +namespace +{ + +struct O2MRelationToVTKCellArrayWorker +{ + vtkNew Cells; + + template + void operator()(ElementsArray* elements, SizesArray* sizes, OffsetsArray* offsets) + { + VTK_ASSUME(elements->GetNumberOfComponents() == 1); + VTK_ASSUME(sizes->GetNumberOfComponents() == 1); + VTK_ASSUME(offsets->GetNumberOfComponents() == 1); + + auto& cellArray = this->Cells; + cellArray->AllocateEstimate(offsets->GetNumberOfTuples(), + std::max(static_cast(sizes->GetRange(0)[1]), vtkIdType(1))); + + vtkDataArrayAccessor e(elements); + vtkDataArrayAccessor s(sizes); + vtkDataArrayAccessor o(offsets); + + const auto numElements = sizes->GetNumberOfTuples(); + for (vtkIdType id = 0; id < numElements; ++id) + { + const auto offset = static_cast(o.Get(id, 0)); + const auto size = static_cast(s.Get(id, 0)); + + cellArray->InsertNextCell(size); + for (vtkIdType cc = 0; cc < size; ++cc) + { + cellArray->InsertCellPoint(e.Get(offset + cc, 0)); + } + } + } +}; +} +//---------------------------------------------------------------------------- +vtkSmartPointer vtkConduitArrayUtilities::O2MRelationToVTKCellArray( + const conduit_node* c_o2mrelation, const std::string& leafname) +{ + const conduit_cpp::Node o2mrelation = + conduit_cpp::cpp_node(const_cast(c_o2mrelation)); + const auto leaf = o2mrelation[leafname]; + auto elements = vtkConduitArrayUtilities::MCArrayToVTKArrayImpl( + conduit_cpp::c_node(&leaf), /*force_signed*/ true); + if (!elements) + { + return nullptr; + } + + if (o2mrelation.has_child("indices")) + { + vtkLogF(WARNING, "'indices' in a O2MRelation are currently ignored."); + } + + const auto node_sizes = o2mrelation["sizes"]; + auto sizes = vtkConduitArrayUtilities::MCArrayToVTKArrayImpl( + conduit_cpp::c_node(&node_sizes), /*force_signed*/ true); + const auto node_offsets = o2mrelation["offsets"]; + auto offsets = vtkConduitArrayUtilities::MCArrayToVTKArrayImpl( + conduit_cpp::c_node(&node_offsets), /*force_signed*/ true); + + O2MRelationToVTKCellArrayWorker worker; + + // Using a reduced type list for typical id types. + using TypeList = + vtkTypeList::Unique>::Result; + + using Dispatcher = vtkArrayDispatch::Dispatch3ByValueType; + if (!Dispatcher::Execute(elements.GetPointer(), sizes.GetPointer(), offsets.GetPointer(), worker)) + { + worker(elements.GetPointer(), sizes.GetPointer(), offsets.GetPointer()); + } + + return worker.Cells; +} + +//---------------------------------------------------------------------------- +void vtkConduitArrayUtilities::PrintSelf(ostream& os, vtkIndent indent) +{ + this->Superclass::PrintSelf(os, indent); +} diff --git a/IO/CatalystConduit/vtkConduitArrayUtilities.h b/IO/CatalystConduit/vtkConduitArrayUtilities.h new file mode 100644 index 000000000000..ac6ab71259e4 --- /dev/null +++ b/IO/CatalystConduit/vtkConduitArrayUtilities.h @@ -0,0 +1,98 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkConduitArrayUtilities.h + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/** + * @class vtkConduitArrayUtilities + * @brief helper to convert Conduit arrays to VTK arrays. + * @ingroup Insitu + * + * vtkConduitArrayUtilities is intended to convert Conduit nodes satisfying the + * `mcarray` protocol to VTK arrays. It uses zero-copy, as much as possible. + * Currently implementation fails if zero-copy is not possible. In future, that + * may be changed to do a deep-copy (with appropriate warnings) if necessary. + * + * This is primarily designed for use by vtkConduitSource. + */ + +#ifndef vtkConduitArrayUtilities_h +#define vtkConduitArrayUtilities_h + +#include "vtkIOCatalystConduitModule.h" // for exports +#include "vtkObject.h" +#include "vtkSmartPointer.h" // for vtkSmartPointer +#include // for std::string + +class vtkCellArray; +class vtkDataArray; + +extern "C" +{ + typedef void conduit_node; +} + +class VTKIOCATALYSTCONDUIT_EXPORT vtkConduitArrayUtilities : public vtkObject +{ +public: + static vtkConduitArrayUtilities* New(); + vtkTypeMacro(vtkConduitArrayUtilities, vtkObject); + void PrintSelf(ostream& os, vtkIndent indent) override; + + //@{ + /** + * Returns a vtkDataArray from a conduit node in the conduit mcarray protocol. + */ + static vtkSmartPointer MCArrayToVTKArray(const conduit_node* mcarray); + static vtkSmartPointer MCArrayToVTKArray( + const conduit_node* mcarray, const std::string& arrayname); + //@} + + /** + * Converts an mcarray to vtkCellArray. + * + * This may reinterpret unsigned array as signed arrays to avoid deep-copying + * of data to match data type expected by vtkCellArray API. + */ + static vtkSmartPointer MCArrayToVTKCellArray( + vtkIdType cellSize, const conduit_node* mcarray); + + /** + * If the number of components in the array does not match the target, a new + * array is created. + */ + static vtkSmartPointer SetNumberOfComponents( + vtkDataArray* array, int num_components); + + /** + * Read a O2MRelation element + */ + static vtkSmartPointer O2MRelationToVTKCellArray( + const conduit_node* o2mrelation, const std::string& leafname); + +protected: + vtkConduitArrayUtilities(); + ~vtkConduitArrayUtilities(); + + static vtkSmartPointer MCArrayToVTKArrayImpl( + const conduit_node* mcarray, bool force_signed); + static vtkSmartPointer MCArrayToVTKAOSArray( + const conduit_node* mcarray, bool force_signed); + static vtkSmartPointer MCArrayToVTKSOAArray( + const conduit_node* mcarray, bool force_signed); + +private: + vtkConduitArrayUtilities(const vtkConduitArrayUtilities&) = delete; + void operator=(const vtkConduitArrayUtilities&) = delete; +}; + +#endif diff --git a/IO/CatalystConduit/vtkConduitSource.cxx b/IO/CatalystConduit/vtkConduitSource.cxx new file mode 100644 index 000000000000..1ecda671282a --- /dev/null +++ b/IO/CatalystConduit/vtkConduitSource.cxx @@ -0,0 +1,770 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkConduitSource.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +#include "vtkConduitSource.h" + +#include "vtkCellArray.h" +#include "vtkCellArrayIterator.h" +#include "vtkConduitArrayUtilities.h" +#include "vtkConvertToMultiBlockDataSet.h" +#include "vtkDataArray.h" +#include "vtkDataAssembly.h" +#include "vtkDataSetAttributes.h" +#include "vtkDoubleArray.h" +#include "vtkFloatArray.h" +#include "vtkImageData.h" +#include "vtkInformation.h" +#include "vtkInformationVector.h" +#include "vtkIntArray.h" +#include "vtkLogger.h" +#include "vtkMultiBlockDataSet.h" +#include "vtkNew.h" +#include "vtkObjectFactory.h" +#include "vtkPartitionedDataSet.h" +#include "vtkPartitionedDataSetCollection.h" +#include "vtkPoints.h" +#include "vtkRectilinearGrid.h" +#include "vtkSmartPointer.h" +#include "vtkStreamingDemandDrivenPipeline.h" +#include "vtkStringArray.h" +#include "vtkStructuredGrid.h" +#include "vtkUnstructuredGrid.h" + +#include +#include + +#include +#include +#include + +namespace detail +{ + +//---------------------------------------------------------------------------- +int GetAssociation(const std::string& assoc) +{ + if (assoc == "element") + { + return vtkDataObject::CELL; + } + else if (assoc == "vertex") + { + return vtkDataObject::POINT; + } + + throw std::runtime_error("unsupported association " + assoc); +} + +//---------------------------------------------------------------------------- +int GetCellType(const std::string& shape) +{ + if (shape == "point") + { + return VTK_VERTEX; + } + else if (shape == "line") + { + return VTK_LINE; + } + else if (shape == "tri") + { + return VTK_TRIANGLE; + } + else if (shape == "quad") + { + return VTK_QUAD; + } + else if (shape == "tet") + { + return VTK_TETRA; + } + else if (shape == "hex") + { + return VTK_HEXAHEDRON; + } + else if (shape == "polyhedral") + { + return VTK_POLYHEDRON; + } + else if (shape == "polygonal") + { + return VTK_POLYGON; + } + else + { + throw std::runtime_error("unsupported shape " + shape); + } +} + +//---------------------------------------------------------------------------- +// internal: get number of points in VTK cell type. +static vtkIdType GetNumberOfPointsInCellType(int vtk_cell_type) +{ + switch (vtk_cell_type) + { + case VTK_VERTEX: + return 1; + case VTK_LINE: + return 2; + case VTK_TRIANGLE: + return 3; + case VTK_QUAD: + case VTK_TETRA: + return 4; + case VTK_HEXAHEDRON: + return 8; + default: + throw std::runtime_error("unsupported cell type " + std::to_string(vtk_cell_type)); + } +} + +//---------------------------------------------------------------------------- +vtkSmartPointer CreatePoints(const conduit_cpp::Node& coords) +{ + if (coords["type"].as_string() != "explicit") + { + throw std::runtime_error("invalid node!"); + } + + conduit_cpp::Node values = coords["values"]; + auto array = vtkConduitArrayUtilities::MCArrayToVTKArray(conduit_cpp::c_node(&values), "coords"); + if (array == nullptr) + { + throw std::runtime_error("failed to convert to VTK array!"); + } + if (array->GetNumberOfComponents() < 3) + { + array = vtkConduitArrayUtilities::SetNumberOfComponents(array, 3); + } + else if (array->GetNumberOfComponents() > 3) + { + throw std::runtime_error("points cannot have more than 3 components!"); + } + + vtkNew pts; + pts->SetData(array); + return pts; +} + +//---------------------------------------------------------------------------- +void SetPolyhedralCells( + vtkUnstructuredGrid* grid, vtkCellArray* elements, vtkCellArray* subelements) +{ + vtkNew connectivity; + vtkNew faces; + vtkNew faceLocations; + + connectivity->AllocateEstimate(elements->GetNumberOfCells(), 10); + faces->Allocate(subelements->GetConnectivityArray()->GetNumberOfTuples()); + faceLocations->Allocate(elements->GetNumberOfCells()); + + auto eIter = vtk::TakeSmartPointer(elements->NewIterator()); + auto seIter = vtk::TakeSmartPointer(subelements->NewIterator()); + + std::vector cellPoints; + for (eIter->GoToFirstCell(); !eIter->IsDoneWithTraversal(); eIter->GoToNextCell()) + { + // init; + cellPoints.clear(); + + // get cell from 'elements'. + vtkIdType size; + vtkIdType const* seIds; + eIter->GetCurrentCell(size, seIds); + + faceLocations->InsertNextValue(faces->GetNumberOfTuples()); + faces->InsertNextValue(size); // number-of-cell-faces. + for (vtkIdType fIdx = 0; fIdx < size; ++fIdx) + { + seIter->GoToCell(seIds[fIdx]); + + vtkIdType ptSize; + vtkIdType const* ptIds; + seIter->GetCurrentCell(ptSize, ptIds); + faces->InsertNextValue(ptSize); // number-of-face-points. + for (vtkIdType ptIdx = 0; ptIdx < ptSize; ++ptIdx) + { + faces->InsertNextValue(ptIds[ptIdx]); + } + + // accumulate pts from all faces in this cell to build the 'connectivity' array. + std::copy(ptIds, ptIds + ptSize, std::back_inserter(cellPoints)); + } + + connectivity->InsertNextCell( + static_cast(cellPoints.size()), cellPoints.empty() ? nullptr : &cellPoints[0]); + } + + connectivity->Squeeze(); + faces->Squeeze(); + faceLocations->Squeeze(); + + vtkNew cellTypes; + cellTypes->SetNumberOfTuples(connectivity->GetNumberOfCells()); + cellTypes->FillValue(static_cast(VTK_POLYHEDRON)); + grid->SetCells(cellTypes, connectivity, faceLocations, faces); +} + +//---------------------------------------------------------------------------- +vtkSmartPointer GetMesh( + const conduit_cpp::Node& topologyNode, const conduit_cpp::Node& coordsets) +{ + // get the coordset for this topology element. + auto coords = coordsets[topologyNode["coordset"].as_string()]; + if (topologyNode["type"].as_string() == "uniform" && coords["type"].as_string() == "uniform") + { + vtkNew img; + int dims[3] = { 1, 1, 1 }; + const char* dims_paths[] = { "dims/i", "dims/j", "dims/k" }; + double origin[3] = { 0, 0, 0 }; + const char* origin_paths[] = { "origin/x", "origin/y", "origin/z" }; + double spacing[3] = { 1, 1, 1 }; + const char* spacing_paths[] = { "spacing/dx", "spacing/dy", "spacing/dz" }; + for (int cc = 0; cc < 3; ++cc) + { + if (coords.has_path(dims_paths[cc])) + { + dims[cc] = coords[dims_paths[cc]].to_int32(); + } + if (coords.has_path(origin_paths[cc])) + { + origin[cc] = coords[origin_paths[cc]].to_double(); + } + if (coords.has_path(spacing_paths[cc])) + { + spacing[cc] = coords[spacing_paths[cc]].to_double(); + } + } + img->SetOrigin(origin); + img->SetSpacing(spacing); + img->SetDimensions(dims); + return img; + } + else if (topologyNode["type"].as_string() == "rectilinear" && + coords["type"].as_string() == "rectilinear") + { + vtkNew rg; + conduit_cpp::Node values_x = coords["values/x"]; + conduit_cpp::Node values_y = coords["values/y"]; + conduit_cpp::Node values_z = coords["values/z"]; + auto xArray = + vtkConduitArrayUtilities::MCArrayToVTKArray(conduit_cpp::c_node(&values_x), "xcoords"); + auto yArray = + vtkConduitArrayUtilities::MCArrayToVTKArray(conduit_cpp::c_node(&values_y), "ycoords"); + auto zArray = + vtkConduitArrayUtilities::MCArrayToVTKArray(conduit_cpp::c_node(&values_z), "zcoords"); + rg->SetDimensions( + xArray->GetNumberOfTuples(), yArray->GetNumberOfTuples(), zArray->GetNumberOfTuples()); + rg->SetXCoordinates(xArray); + rg->SetYCoordinates(xArray); + rg->SetZCoordinates(xArray); + return rg; + } + else if (topologyNode["type"].as_string() == "structured" && + coords["type"].as_string() == "explicit") + { + vtkNew sg; + sg->SetPoints(CreatePoints(coords)); + sg->SetDimensions( + topologyNode.has_path("elements/dims/i") ? topologyNode["elements/dims/i"].to_int32() + 1 : 1, + topologyNode.has_path("elements/dims/j") ? topologyNode["elements/dims/j"].to_int32() + 1 : 1, + topologyNode.has_path("elements/dims/k") ? topologyNode["elements/dims/k"].to_int32() + 1 + : 1); + return sg; + } + else if (topologyNode["type"].as_string() == "unstructured" && + coords["type"].as_string() == "explicit") + { + vtkNew ug; + conduit_cpp::Node connectivity = topologyNode["elements/connectivity"]; + const conduit_cpp::DataType dtype0 = connectivity.dtype(); + const auto nb_cells = dtype0.number_of_elements(); + if (nb_cells > 0) + { + ug->SetPoints(CreatePoints(coords)); + const auto vtk_cell_type = GetCellType(topologyNode["elements/shape"].as_string()); + if (vtk_cell_type == VTK_POLYHEDRON) + { + // polyhedra uses O2M and not M2C arrays, so need to process it + // differently. + conduit_cpp::Node t_elements = topologyNode["elements"]; + conduit_cpp::Node t_subelements = topologyNode["subelements"]; + auto elements = vtkConduitArrayUtilities::O2MRelationToVTKCellArray( + conduit_cpp::c_node(&t_elements), "connectivity"); + auto subelements = vtkConduitArrayUtilities::O2MRelationToVTKCellArray( + conduit_cpp::c_node(&t_subelements), "connectivity"); + + // currently, this is an ugly deep-copy. Once vtkUnstructuredGrid is modified + // as proposed here (vtk/vtk#18190), this will get simpler. + SetPolyhedralCells(ug, elements, subelements); + } + else if (vtk_cell_type == VTK_POLYGON) + { + // polygons use O2M and not M2C arrays, so need to process it + // differently. + conduit_cpp::Node t_elements = topologyNode["elements"]; + auto cellArray = vtkConduitArrayUtilities::O2MRelationToVTKCellArray( + conduit_cpp::c_node(&t_elements), "connectivity"); + ug->SetCells(vtk_cell_type, cellArray); + } + else + { + const auto cell_size = GetNumberOfPointsInCellType(vtk_cell_type); + auto cellArray = vtkConduitArrayUtilities::MCArrayToVTKCellArray( + cell_size, conduit_cpp::c_node(&connectivity)); + ug->SetCells(vtk_cell_type, cellArray); + } + } + // if there are no cells in the Conduit mesh, return an empty ug + return ug; + } + else + { + throw std::runtime_error("unsupported topology or coordset"); + } +} + +//---------------------------------------------------------------------------- +bool RequestMesh(vtkPartitionedDataSet* output, const conduit_cpp::Node& node) +{ + conduit_cpp::Node info; + if (!conduit_cpp::BlueprintMesh::verify(node, info)) + { + vtkLogF(ERROR, "Mesh blueprint verification failed!"); + return false; + } + + std::map> datasets; + + // process "topologies". + auto topologies = node["topologies"]; + conduit_index_t nchildren = topologies.number_of_children(); + for (conduit_index_t i = 0; i < nchildren; ++i) + { + auto child = topologies.child(i); + try + { + if (auto ds = detail::GetMesh(child, node["coordsets"])) + { + auto idx = output->GetNumberOfPartitions(); + output->SetPartition(idx, ds); + output->GetMetaData(idx)->Set(vtkCompositeDataSet::NAME(), child.name().c_str()); + datasets[child.name()] = ds; + } + } + catch (std::exception& e) + { + vtkLogF(ERROR, "failed to process '../topologies/%s'.", child.name().c_str()); + vtkLogF(ERROR, "ERROR: \n%s\n", e.what()); + return false; + } + } + + // process "fields" + if (!node.has_path("fields")) + { + return true; + } + + auto fields = node["fields"]; + nchildren = fields.number_of_children(); + for (conduit_index_t i = 0; i < nchildren; ++i) + { + auto fieldNode = fields.child(i); + const auto fieldname = fieldNode.name(); + try + { + auto dataset = datasets.at(fieldNode["topology"].as_string()); + const auto vtk_association = detail::GetAssociation(fieldNode["association"].as_string()); + auto dsa = dataset->GetAttributes(vtk_association); + auto values = fieldNode["values"]; + size_t dataset_size; + if (values.number_of_children() == 0) + { + dataset_size = values.dtype().number_of_elements(); + } + else + { + dataset_size = values.child(0).dtype().number_of_elements(); + } + if (dataset_size > 0) + { + auto array = + vtkConduitArrayUtilities::MCArrayToVTKArray(conduit_cpp::c_node(&values), fieldname); + if (array->GetNumberOfTuples() != dataset->GetNumberOfElements(vtk_association)) + { + throw std::runtime_error("mismatched tuple count!"); + } + dsa->AddArray(array); + } + } + catch (std::exception& e) + { + vtkLogF(ERROR, "failed to process '../fields/%s'.", fieldname.c_str()); + vtkLogF(ERROR, "ERROR: \n%s\n", e.what()); + return false; + } + } + + return true; +} + +bool AddGlobalData(vtkDataObject* output, const conduit_cpp::Node& globalFields) +{ + auto fd = output->GetFieldData(); + + // this can be made very generic. For now, I am only processing known + // fields. + if (globalFields.has_path("time")) + { + // for compatibility with older Catalyst scripts. + vtkNew timeValue; + timeValue->SetName("TimeValue"); + timeValue->SetNumberOfTuples(1); + timeValue->SetTypedComponent(0, 0, globalFields["time"].to_float64()); + fd->AddArray(timeValue); + + // "time" is a better name than "TimeValue" + vtkNew time; + time->SetName("time"); + time->SetNumberOfTuples(1); + time->SetTypedComponent(0, 0, globalFields["time"].to_float64()); + fd->AddArray(time); + + // let's also set DATA_TIME_STEP. + output->GetInformation()->Set( + vtkDataObject::DATA_TIME_STEP(), globalFields["time"].to_float64()); + } + if (globalFields.has_path("cycle")) + { + vtkNew cycle; + cycle->SetName("cycle"); + cycle->SetNumberOfTuples(1); + cycle->SetTypedComponent(0, 0, globalFields["cycle"].to_int64()); + fd->AddArray(cycle); + } + if (globalFields.has_path("timestep")) + { + vtkNew timestep; + timestep->SetName("timestep"); + timestep->SetNumberOfTuples(1); + timestep->SetTypedComponent(0, 0, globalFields["timestep"].to_int64()); + fd->AddArray(timestep); + } + if (globalFields.has_path("channel")) + { + vtkNew channel; + channel->SetName("__CatalystChannel__"); + channel->InsertNextValue(globalFields["channel"].as_string().c_str()); + fd->AddArray(channel); + } + return true; +} + +bool AddFieldData(vtkDataObject* output, const conduit_cpp::Node& stateFields) +{ + auto field_data = output->GetFieldData(); + auto number_of_children = stateFields.number_of_children(); + for (conduit_index_t child_index = 0; child_index < number_of_children; ++child_index) + { + auto field_node = stateFields.child(child_index); + const auto field_name = field_node.name(); + + try + { + size_t dataset_size = 0; + if (field_node.number_of_children() == 0) + { + dataset_size = field_node.dtype().number_of_elements(); + } + else + { + dataset_size = field_node.child(0).dtype().number_of_elements(); + } + + if (dataset_size > 0) + { + vtkSmartPointer dataArray; + if (field_node.dtype().is_string()) + { + auto stringArray = vtkSmartPointer::New(); + stringArray->SetNumberOfTuples(1); + stringArray->SetValue(0, field_node.as_string().c_str()); + dataArray = stringArray; + dataArray->SetName(field_name.c_str()); + } + else + { + dataArray = vtkConduitArrayUtilities::MCArrayToVTKArray( + conduit_cpp::c_node(&field_node), field_name); + } + + if (dataArray) + { + field_data->AddArray(dataArray); + } + } + } + catch (std::exception& e) + { + vtkLogF(ERROR, "failed to process '../state/fields/%s'.", field_name.c_str()); + vtkLogF(ERROR, "ERROR: \n%s\n", e.what()); + return false; + } + } + return true; +} + +} // namespace detail + +class vtkConduitSource::vtkInternals +{ +public: + conduit_cpp::Node Node; + conduit_cpp::Node GlobalFieldsNode; + conduit_cpp::Node AssemblyNode; + bool GlobalFieldsNodeValid{ false }; + bool AssemblyNodeValid{ false }; +}; + +vtkStandardNewMacro(vtkConduitSource); +//---------------------------------------------------------------------------- +vtkConduitSource::vtkConduitSource() + : Internals(new vtkConduitSource::vtkInternals()) + , UseMultiMeshProtocol(false) + , OutputMultiBlock(false) +{ + this->SetNumberOfInputPorts(0); + this->SetNumberOfOutputPorts(1); +} + +//---------------------------------------------------------------------------- +vtkConduitSource::~vtkConduitSource() = default; + +//---------------------------------------------------------------------------- +void vtkConduitSource::SetNode(const conduit_node* node) +{ + if (conduit_cpp::c_node(&this->Internals->Node) == node) + { + return; + } + this->Internals->Node = conduit_cpp::cpp_node(const_cast(node)); + this->Modified(); +} + +//---------------------------------------------------------------------------- +void vtkConduitSource::SetGlobalFieldsNode(const conduit_node* node) +{ + if (this->Internals->GlobalFieldsNodeValid && + conduit_cpp::c_node(&this->Internals->GlobalFieldsNode) == node) + { + return; + } + + if (node) + { + this->Internals->GlobalFieldsNode = conduit_cpp::cpp_node(const_cast(node)); + } + this->Internals->GlobalFieldsNodeValid = (node != nullptr); + this->Modified(); +} + +//---------------------------------------------------------------------------- +void vtkConduitSource::SetAssemblyNode(const conduit_node* node) +{ + if (this->Internals->AssemblyNodeValid && + conduit_cpp::c_node(&this->Internals->AssemblyNode) == node) + { + return; + } + + if (node) + { + this->Internals->AssemblyNode = conduit_cpp::cpp_node(const_cast(node)); + } + this->Internals->AssemblyNodeValid = (node != nullptr); + this->Modified(); +} + +//---------------------------------------------------------------------------- +int vtkConduitSource::RequestDataObject( + vtkInformation*, vtkInformationVector**, vtkInformationVector* outputVector) +{ + const int dataType = this->OutputMultiBlock + ? VTK_MULTIBLOCK_DATA_SET + : this->UseMultiMeshProtocol ? VTK_PARTITIONED_DATA_SET_COLLECTION : VTK_PARTITIONED_DATA_SET; + + return this->SetOutputDataObject(dataType, outputVector->GetInformationObject(0), /*exact=*/true) + ? 1 + : 0; +} + +//---------------------------------------------------------------------------- +int vtkConduitSource::RequestData( + vtkInformation*, vtkInformationVector**, vtkInformationVector* outputVector) +{ + auto& internals = (*this->Internals); + vtkDataObject* real_output = vtkDataObject::GetData(outputVector, 0); + if (this->UseMultiMeshProtocol) + { + vtkNew pdc_output; + const auto& node = internals.Node; + const auto count = node.number_of_children(); + pdc_output->SetNumberOfPartitionedDataSets(static_cast(count)); + + std::map name_map; + for (conduit_index_t cc = 0; cc < count; ++cc) + { + const auto child = node.child(cc); + auto pd = pdc_output->GetPartitionedDataSet(static_cast(cc)); + assert(pd != nullptr); + if (!detail::RequestMesh(pd, child)) + { + vtkLogF(ERROR, "Failed reading mesh '%s'", child.name().c_str()); + real_output->Initialize(); + return 0; + } + + // set the mesh name. + pdc_output->GetMetaData(cc)->Set(vtkCompositeDataSet::NAME(), child.name().c_str()); + name_map[child.name()] = static_cast(cc); + + // set field data. + if (child.has_path("state/fields")) + { + detail::AddFieldData(pd, child["state/fields"]); + } + } + + if (internals.AssemblyNodeValid) + { + vtkNew assembly; + std::function helper; + helper = [&name_map, &assembly, &helper](int parent, const conduit_cpp::Node& node) { + if (node.dtype().is_object()) + { + for (conduit_index_t cc = 0; cc < node.number_of_children(); ++cc) + { + auto child = node.child(cc); + auto nodeName = vtkDataAssembly::MakeValidNodeName(child.name().c_str()); + auto childId = assembly->AddNode(nodeName.c_str(), parent); + assembly->SetAttribute(childId, "label", child.name().c_str()); + helper(childId, child); + } + } + else if (node.dtype().is_list()) + { + for (conduit_index_t cc = 0; cc < node.number_of_children(); ++cc) + { + auto child = node.child(cc); + if (!child.dtype().is_string()) + { + vtkLogF(ERROR, "list cannot have non-string items!"); + continue; + } + helper(parent, node.child(cc)); + } + } + else if (node.dtype().is_string()) + { + auto value = node.as_string(); + auto iter = name_map.find(node.as_string()); + if (iter != name_map.end()) + { + assembly->AddDataSetIndex(parent, iter->second); + } + else + { + vtkLogF(ERROR, "Assembly referring to unknown node '%s'. Skipping.", value.c_str()); + } + } + }; + // assembly->SetRootNodeName(....); What should this be? + helper(assembly->GetRootNode(), internals.AssemblyNode); + pdc_output->SetDataAssembly(assembly); + } + real_output->ShallowCopy(pdc_output); + } + else + { + vtkNew pd_output; + if (!detail::RequestMesh(pd_output, internals.Node)) + { + vtkLogF(ERROR, "Failed reading mesh from '%s'", internals.Node.name().c_str()); + real_output->Initialize(); + return 0; + } + real_output->ShallowCopy(pd_output); + } + + if (this->OutputMultiBlock) + { + vtkNew converter; + converter->SetInputData(real_output); + converter->Update(); + real_output->ShallowCopy(converter->GetOutput()); + } + + if (internals.GlobalFieldsNodeValid) + { + detail::AddGlobalData(real_output, internals.GlobalFieldsNode); + } + + if (internals.Node.has_path("state/fields")) + { + detail::AddFieldData(real_output, internals.Node["state/fields"]); + } + + return 1; +} + +//---------------------------------------------------------------------------- +int vtkConduitSource::RequestInformation( + vtkInformation* request, vtkInformationVector** inputVector, vtkInformationVector* outputVector) +{ + if (!this->Superclass::RequestInformation(request, inputVector, outputVector)) + { + return 0; + } + + vtkInformation* outInfo = outputVector->GetInformationObject(0); + outInfo->Set(CAN_HANDLE_PIECE_REQUEST(), 1); + + if (!this->Internals->GlobalFieldsNodeValid) + { + return 1; + } + + auto& node = this->Internals->GlobalFieldsNode; + if (node.has_path("time")) + { + double time = node["time"].to_float64(); + double timesteps[2] = { time, time }; + outInfo->Set(vtkStreamingDemandDrivenPipeline::TIME_STEPS(), &time, 1); + outInfo->Set(vtkStreamingDemandDrivenPipeline::TIME_RANGE(), timesteps, 2); + } + else + { + outInfo->Remove(vtkStreamingDemandDrivenPipeline::TIME_STEPS()); + outInfo->Remove(vtkStreamingDemandDrivenPipeline::TIME_RANGE()); + } + + return 1; +} + +//---------------------------------------------------------------------------- +void vtkConduitSource::PrintSelf(ostream& os, vtkIndent indent) +{ + this->Superclass::PrintSelf(os, indent); +} diff --git a/IO/CatalystConduit/vtkConduitSource.h b/IO/CatalystConduit/vtkConduitSource.h new file mode 100644 index 000000000000..abc03829b7de --- /dev/null +++ b/IO/CatalystConduit/vtkConduitSource.h @@ -0,0 +1,114 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkConduitSource.h + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/** + * @class vtkConduitSource + * @brief data source for Conduit Mesh Blueprint. + * @ingroup Insitu + * + * vtkConduitSource is a data source that processes a Conduit node + * using [Conduit Mesh + * Blueprint](https://llnl-conduit.readthedocs.io/en/latest/blueprint_mesh.html#) + * to describe computational mesh and associated meta-data. + * + * vtkConduitSource currently produces a `vtkParitionedDataSet` or + * `vtkPartitionedDataSetCollection` + * + * @sa vtkConduitArrayUtilities + */ + +#ifndef vtkConduitSource_h +#define vtkConduitSource_h + +#include "vtkDataObjectAlgorithm.h" +#include "vtkIOCatalystConduitModule.h" // for exports +#include // for std::unique_ptr +extern "C" +{ + typedef void conduit_node; +} +class VTKIOCATALYSTCONDUIT_EXPORT vtkConduitSource : public vtkDataObjectAlgorithm +{ +public: + static vtkConduitSource* New(); + vtkTypeMacro(vtkConduitSource, vtkDataObjectAlgorithm); + void PrintSelf(ostream& os, vtkIndent indent) override; + + ///@{ + /** + * vtkConduitSource supports single 'mesh' and multiple 'mesh' (aka 'multimesh') protocols. + * Set this to true if the source is handling multimesh (default is false). + */ + vtkSetMacro(UseMultiMeshProtocol, bool); + vtkGetMacro(UseMultiMeshProtocol, bool); + vtkBooleanMacro(UseMultiMeshProtocol, bool); + ///@} + + ///@{ + /** + * vtkConduitSource supports output vtkMultiBlock instead of vtkPartitionedDataSetCollection + * Set this to true if the source should output vtkMultiBlock (default is false). + */ + vtkSetMacro(OutputMultiBlock, bool); + vtkGetMacro(OutputMultiBlock, bool); + vtkBooleanMacro(OutputMultiBlock, bool); + ///@} + + //@{ + /** + * Get/Set the conduit_node. This must be the node satisfying the Conduit Mesh + * Blueprint. + */ + void SetNode(const conduit_node* node); + //@} + + //@{ + /** + * Mechanism to add global / field-data arrays. + * + * This is currently experimental and expected to change. It is experimental + * since it's unclear to the developer if Conduit Blueprint already supports + * specifying global fields i.e. without any association. Doesn't look like + * it, but if it does, this should be changed to directly leverage that. + */ + void SetGlobalFieldsNode(const conduit_node* node); + //@} + + //@{ + /** + * Set the node to read the assembly information from, if any. + */ + void SetAssemblyNode(const conduit_node* node); + //@} + +protected: + vtkConduitSource(); + ~vtkConduitSource() override; + + int RequestDataObject(vtkInformation*, vtkInformationVector**, vtkInformationVector*) override; + int RequestData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) override; + int RequestInformation(vtkInformation* request, vtkInformationVector** inputVector, + vtkInformationVector* outputVector) override; + +private: + vtkConduitSource(const vtkConduitSource&) = delete; + void operator=(const vtkConduitSource&) = delete; + + class vtkInternals; + std::unique_ptr Internals; + bool UseMultiMeshProtocol; + bool OutputMultiBlock; +}; + +#endif diff --git a/IO/CatalystConduit/vtkDataObjectToConduit.cxx b/IO/CatalystConduit/vtkDataObjectToConduit.cxx new file mode 100644 index 000000000000..a595381c9cb9 --- /dev/null +++ b/IO/CatalystConduit/vtkDataObjectToConduit.cxx @@ -0,0 +1,501 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkDataObjectToConduit.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +#include "vtkDataObjectToConduit.h" + +#include "vtkAOSDataArrayTemplate.h" +#include "vtkCellData.h" +#include "vtkDataArray.h" +#include "vtkDataObject.h" +#include "vtkDataSet.h" +#include "vtkFieldData.h" +#include "vtkImageData.h" +#include "vtkLogger.h" +#include "vtkPointData.h" +#include "vtkPointSet.h" +#include "vtkPoints.h" +#include "vtkRectilinearGrid.h" +#include "vtkSOADataArrayTemplate.h" +#include "vtkStringArray.h" +#include "vtkStructuredGrid.h" +#include "vtkTypeFloat32Array.h" +#include "vtkTypeFloat64Array.h" +#include "vtkTypeInt16Array.h" +#include "vtkTypeInt32Array.h" +#include "vtkTypeInt64Array.h" +#include "vtkTypeInt8Array.h" +#include "vtkTypeUInt16Array.h" +#include "vtkTypeUInt32Array.h" +#include "vtkTypeUInt64Array.h" +#include "vtkTypeUInt8Array.h" +#include "vtkUnstructuredGrid.h" + +#include + +namespace +{ + +//---------------------------------------------------------------------------- +bool IsMixedShape(vtkUnstructuredGrid* unstructured_grid) +{ + auto* cell_types = unstructured_grid->GetDistinctCellTypesArray(); + return cell_types->GetNumberOfTuples() > 1; +} + +//---------------------------------------------------------------------------- +bool IsSignedIntegralType(int data_type) +{ + constexpr bool is_char_type_signed = (CHAR_MIN == SCHAR_MIN) && (CHAR_MAX == SCHAR_MAX); + + return (is_char_type_signed && (data_type == VTK_CHAR)) || (data_type == VTK_SIGNED_CHAR) || + (data_type == VTK_SHORT) || (data_type == VTK_INT) || (data_type == VTK_LONG) || + (data_type == VTK_ID_TYPE) || (data_type == VTK_LONG_LONG) || (data_type == VTK_TYPE_INT64); +} + +//---------------------------------------------------------------------------- +bool IsUnsignedIntegralType(int data_type) +{ + constexpr bool is_char_type_signed = (CHAR_MIN == SCHAR_MIN) && (CHAR_MAX == SCHAR_MAX); + + return (!is_char_type_signed && (data_type == VTK_CHAR)) || (data_type == VTK_UNSIGNED_CHAR) || + (data_type == VTK_UNSIGNED_SHORT) || (data_type == VTK_UNSIGNED_INT) || + (data_type == VTK_UNSIGNED_LONG) || (data_type == VTK_ID_TYPE) || + (data_type == VTK_UNSIGNED_LONG_LONG); +} + +//---------------------------------------------------------------------------- +bool IsFloatType(int data_type) +{ + return ((data_type == VTK_FLOAT) || (data_type == VTK_DOUBLE)); +} + +//---------------------------------------------------------------------------- +bool ConvertDataArrayToMCArray( + vtkDataArray* data_array, int offset, int stride, conduit_cpp::Node& conduit_node) +{ + stride = std::max(stride, 1); + conduit_index_t number_of_elements = data_array->GetNumberOfValues() / stride; + + int data_type = data_array->GetDataType(); + int data_type_size = data_array->GetDataTypeSize(); + int array_type = data_array->GetArrayType(); + + if (array_type != vtkAbstractArray::AoSDataArrayTemplate) + { + vtkLog(ERROR, "Unsupported data array type: " << data_array->GetDataTypeAsString()); + return false; + } + + // The code below uses the legacy GetVoidPointer on purpose to get zero copy. + bool is_supported = true; + if (IsSignedIntegralType(data_type)) + { + switch (data_type_size) + { + case 1: + conduit_node.set_external_int8_ptr((conduit_int8*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_int8), stride * sizeof(conduit_int8)); + break; + + case 2: + conduit_node.set_external_int16_ptr((conduit_int16*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_int16), stride * sizeof(conduit_int16)); + break; + + case 4: + conduit_node.set_external_int32_ptr((conduit_int32*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_int32), stride * sizeof(conduit_int32)); + break; + + case 8: + conduit_node.set_external_int64_ptr((conduit_int64*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_int64), stride * sizeof(conduit_int64)); + break; + + default: + is_supported = false; + } + } + else if (IsUnsignedIntegralType(data_type)) + { + switch (data_type_size) + { + case 1: + conduit_node.set_external_uint8_ptr((conduit_uint8*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_uint8), stride * sizeof(conduit_uint8)); + break; + + case 2: + conduit_node.set_external_uint16_ptr((conduit_uint16*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_uint16), stride * sizeof(conduit_uint16)); + break; + + case 4: + conduit_node.set_external_uint32_ptr((conduit_uint32*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_uint32), stride * sizeof(conduit_uint32)); + break; + + case 8: + conduit_node.set_external_uint64_ptr((conduit_uint64*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_uint64), stride * sizeof(conduit_uint64)); + break; + + default: + is_supported = false; + } + } + else if (IsFloatType(data_type)) + { + switch (data_type_size) + { + case 4: + conduit_node.set_external_float32_ptr((conduit_float32*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_float32), stride * sizeof(conduit_float32)); + break; + + case 8: + conduit_node.set_external_float64_ptr((conduit_float64*)data_array->GetVoidPointer(0), + number_of_elements, offset * sizeof(conduit_float64), stride * sizeof(conduit_float64)); + break; + + default: + is_supported = false; + } + } + + if (!is_supported) + { + vtkLog(ERROR, + "Unsupported data array type: " << data_array->GetDataTypeAsString() + << " size: " << data_type_size << " type: " << array_type); + } + + return is_supported; +} + +//---------------------------------------------------------------------------- +bool ConvertDataArrayToMCArray(vtkDataArray* data_array, conduit_cpp::Node& conduit_node) +{ + return ConvertDataArrayToMCArray(data_array, 0, 0, conduit_node); +} + +//---------------------------------------------------------------------------- +bool ConvertPoints(vtkPoints* points, conduit_cpp::Node& x_values_node, + conduit_cpp::Node& y_values_node, conduit_cpp::Node& z_values_node) +{ + if (auto data_array = points->GetData()) + { + return ConvertDataArrayToMCArray(data_array, 0, 3, x_values_node) && + ConvertDataArrayToMCArray(data_array, 1, 3, y_values_node) && + ConvertDataArrayToMCArray(data_array, 2, 3, z_values_node); + } + + return false; +} + +//---------------------------------------------------------------------------- +bool FillTopology(vtkDataSet* data_set, conduit_cpp::Node& conduit_node) +{ + if (auto imageData = vtkImageData::SafeDownCast(data_set)) + { + auto coords_node = conduit_node["coordsets/coords"]; + + coords_node["type"] = "uniform"; + + int* dimensions = imageData->GetDimensions(); + coords_node["dims/i"] = dimensions[0]; + coords_node["dims/j"] = dimensions[1]; + coords_node["dims/k"] = dimensions[2]; + + double* origin = imageData->GetOrigin(); + coords_node["origin/x"] = origin[0]; + coords_node["origin/y"] = origin[1]; + coords_node["origin/z"] = origin[2]; + + double* spacing = imageData->GetSpacing(); + coords_node["spacing/dx"] = spacing[0]; + coords_node["spacing/dy"] = spacing[1]; + coords_node["spacing/dz"] = spacing[2]; + + auto topologies_node = conduit_node["topologies/mesh"]; + topologies_node["type"] = "uniform"; + topologies_node["coordset"] = "coords"; + } + else if (auto rectilinear_grid = vtkRectilinearGrid::SafeDownCast(data_set)) + { + auto coords_node = conduit_node["coordsets/coords"]; + + coords_node["type"] = "rectilinear"; + + auto x_values_node = coords_node["values/x"]; + if (!ConvertDataArrayToMCArray(rectilinear_grid->GetXCoordinates(), x_values_node)) + { + vtkLog(ERROR, "Failed ConvertDataArrayToMCArray for values/x"); + return false; + } + + auto y_values_node = coords_node["values/y"]; + if (!ConvertDataArrayToMCArray(rectilinear_grid->GetYCoordinates(), y_values_node)) + { + vtkLog(ERROR, "Failed ConvertDataArrayToMCArray for values/y"); + return false; + } + + auto z_values_node = coords_node["values/z"]; + if (!ConvertDataArrayToMCArray(rectilinear_grid->GetZCoordinates(), z_values_node)) + { + vtkLog(ERROR, "Failed ConvertDataArrayToMCArray for values/z"); + return false; + } + + auto topologies_node = conduit_node["topologies/mesh"]; + topologies_node["type"] = "rectilinear"; + topologies_node["coordset"] = "coords"; + } + else if (auto structured_grid = vtkStructuredGrid::SafeDownCast(data_set)) + { + auto coords_node = conduit_node["coordsets/coords"]; + + coords_node["type"] = "explicit"; + + auto x_values_node = coords_node["values/x"]; + auto y_values_node = coords_node["values/y"]; + auto z_values_node = coords_node["values/z"]; + + if (!ConvertPoints(structured_grid->GetPoints(), x_values_node, y_values_node, z_values_node)) + { + vtkLog(ERROR, "Failed ConvertPoints for structured grid"); + return false; + } + + auto topologies_node = conduit_node["topologies/mesh"]; + topologies_node["type"] = "structured"; + topologies_node["coordset"] = "coords"; + int* dimensions = structured_grid->GetDimensions(); + topologies_node["elements/dims/i"] = dimensions[0]; + topologies_node["elements/dims/j"] = dimensions[1]; + topologies_node["elements/dims/k"] = dimensions[2]; + } + else if (auto unstructured_grid = vtkUnstructuredGrid::SafeDownCast(data_set)) + { + if (IsMixedShape(unstructured_grid)) + { + vtkLogF(ERROR, "Unstructured type with mixed shape type unsupported."); + return false; + } + + auto coords_node = conduit_node["coordsets/coords"]; + + coords_node["type"] = "explicit"; + + auto x_values_node = coords_node["values/x"]; + auto y_values_node = coords_node["values/y"]; + auto z_values_node = coords_node["values/z"]; + + auto* points = unstructured_grid->GetPoints(); + + if (points) + { + if (!ConvertPoints(points, x_values_node, y_values_node, z_values_node)) + { + vtkLogF(ERROR, "ConvertPoints failed for unstructured grid."); + return false; + } + } + else + { + x_values_node = std::vector(); + y_values_node = std::vector(); + z_values_node = std::vector(); + } + + auto topologies_node = conduit_node["topologies/mesh"]; + topologies_node["type"] = "unstructured"; + topologies_node["coordset"] = "coords"; + + int cell_type = VTK_VERTEX; + const auto number_of_cells = unstructured_grid->GetNumberOfCells(); + if (number_of_cells > 0) + { + cell_type = unstructured_grid->GetCellType(0); + } + + switch (cell_type) + { + case VTK_HEXAHEDRON: + topologies_node["elements/shape"] = "hex"; + break; + case VTK_TETRA: + topologies_node["elements/shape"] = "tet"; + break; + case VTK_QUAD: + topologies_node["elements/shape"] = "quad"; + break; + case VTK_TRIANGLE: + topologies_node["elements/shape"] = "tri"; + break; + case VTK_LINE: + topologies_node["elements/shape"] = "line"; + break; + case VTK_VERTEX: + topologies_node["elements/shape"] = "point"; + break; + default: + vtkLog(ERROR, << "Unsupported cell type in unstructured grid. Cell type: " + << vtkCellTypes::GetClassNameFromTypeId(cell_type)); + return false; + } + + auto cell_connectivity = unstructured_grid->GetCells(); + auto connectivity_node = topologies_node["elements/connectivity"]; + + if (!ConvertDataArrayToMCArray(cell_connectivity->GetConnectivityArray(), connectivity_node)) + { + vtkLogF(ERROR, "ConvertDataArrayToMCArray failed for unstructured grid."); + return false; + } + } + else + { + vtkLog(ERROR, "Unsupported data set type: " << data_set->GetClassName()); + return false; + } + + return true; +} + +//---------------------------------------------------------------------------- +bool FillFields( + vtkFieldData* field_data, const std::string& association, conduit_cpp::Node& conduit_node) +{ + bool is_success = true; + + int array_count = field_data->GetNumberOfArrays(); + for (int array_index = 0; is_success && array_index < array_count; ++array_index) + { + auto array = field_data->GetAbstractArray(array_index); + auto name = array->GetName(); + if (!name) + { + vtkLogF(WARNING, "Unamed array, it will be ignored."); + continue; + } + + if (association.empty()) + { + // VTK Field Data are translated to state/fields childs. + auto field_node = conduit_node["state/fields"][name]; + + if (auto string_array = vtkStringArray::SafeDownCast(array)) + { + if (string_array->GetNumberOfValues() > 0) + { + field_node.set_string(string_array->GetValue(0)); + if (string_array->GetNumberOfValues() > 1) + { + vtkLog(WARNING, + "The string array '" << string_array->GetName() + << "' contains more than one element. Only the first one will " + "be converted to conduit node.") + } + } + } + else if (auto data_array = vtkDataArray::SafeDownCast(array)) + { + is_success = ConvertDataArrayToMCArray(data_array, field_node); + } + else + { + vtkLogF(ERROR, "Unknown array type '%s' in Field Data.", name); + is_success = false; + } + } + else if (auto data_array = vtkDataArray::SafeDownCast(array)) + { + auto field_node = conduit_node["fields"][name]; + field_node["association"] = association; + field_node["topology"] = "mesh"; + field_node["volume_dependent"] = "false"; + + auto values_node = field_node["values"]; + is_success = ConvertDataArrayToMCArray(data_array, values_node); + } + else + { + vtkLogF(ERROR, "Unknown array type '%s' associated to: %s", name, association.c_str()); + is_success = false; + } + } + + return is_success; +} + +//---------------------------------------------------------------------------- +bool FillFields(vtkDataSet* data_set, conduit_cpp::Node& conduit_node) +{ + if (auto cell_data = data_set->GetCellData()) + { + if (!FillFields(cell_data, "element", conduit_node)) + { + vtkVLog(vtkLogger::VERBOSITY_ERROR, "FillFields with element failed."); + return false; + } + } + + if (auto point_data = data_set->GetPointData()) + { + if (!FillFields(point_data, "vertex", conduit_node)) + { + vtkVLog(vtkLogger::VERBOSITY_ERROR, "FillFields with vertex failed."); + return false; + } + } + + if (auto field_data = data_set->GetFieldData()) + { + if (!FillFields(field_data, "", conduit_node)) + { + vtkVLog(vtkLogger::VERBOSITY_ERROR, "FillFields with field data failed."); + return false; + } + } + + return true; +} + +//---------------------------------------------------------------------------- +bool FillConduitNodeFromDataSet(vtkDataSet* data_set, conduit_cpp::Node& conduit_node) +{ + return FillTopology(data_set, conduit_node) && FillFields(data_set, conduit_node); +} + +} // anonymous namespace + +namespace vtkDataObjectToConduit +{ + +//---------------------------------------------------------------------------- +bool FillConduitNode(vtkDataObject* data_object, conduit_cpp::Node& conduit_node) +{ + auto data_set = vtkDataSet::SafeDownCast(data_object); + if (!data_set) + { + vtkLogF(ERROR, "Only Data Set objects are supported in vtkDataObjectToConduit."); + return false; + } + + return FillConduitNodeFromDataSet(data_set, conduit_node); +} + +} // vtkDataObjectToConduit namespace diff --git a/IO/CatalystConduit/vtkDataObjectToConduit.h b/IO/CatalystConduit/vtkDataObjectToConduit.h new file mode 100644 index 000000000000..275e7b4fe56a --- /dev/null +++ b/IO/CatalystConduit/vtkDataObjectToConduit.h @@ -0,0 +1,46 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkDataObjectToConduit.h + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/** + * @class vtkDataObjectToConduit + * @brief Convert VTK Data Object to Conduit Node + */ + +#ifndef vtkDataObjectToConduit_h +#define vtkDataObjectToConduit_h + +#include "vtkIOCatalystConduitModule.h" // For windows import/export of shared libraries +#include "vtkObject.h" + +namespace conduit_cpp +{ +class Node; +} + +class vtkDataObject; + +namespace vtkDataObjectToConduit +{ +/** + * Fill the given conduit node with the data from the data object. + * The final structure is a valid blueprint mesh. + * + * At the moment, only vtkDataSet are supported. + */ +VTKIOCATALYSTCONDUIT_EXPORT bool FillConduitNode( + vtkDataObject* data_object, conduit_cpp::Node& conduit_node); +}; + +#endif +// VTK-HeaderTest-Exclude: vtkDataObjectToConduit.h -- GitLab From 388fc7ca8c49f91241f364da915492d49936c2e2 Mon Sep 17 00:00:00 2001 From: Nicolas Vuaille Date: Wed, 23 Feb 2022 10:30:59 +0100 Subject: [PATCH 0103/1015] Generify ConduitSource data array generation --- IO/CatalystConduit/vtkConduitArrayUtilities.h | 2 +- IO/CatalystConduit/vtkConduitSource.cxx | 69 +++++++------------ 2 files changed, 26 insertions(+), 45 deletions(-) diff --git a/IO/CatalystConduit/vtkConduitArrayUtilities.h b/IO/CatalystConduit/vtkConduitArrayUtilities.h index ac6ab71259e4..938aab121483 100644 --- a/IO/CatalystConduit/vtkConduitArrayUtilities.h +++ b/IO/CatalystConduit/vtkConduitArrayUtilities.h @@ -81,7 +81,7 @@ public: protected: vtkConduitArrayUtilities(); - ~vtkConduitArrayUtilities(); + ~vtkConduitArrayUtilities() override; static vtkSmartPointer MCArrayToVTKArrayImpl( const conduit_node* mcarray, bool force_signed); diff --git a/IO/CatalystConduit/vtkConduitSource.cxx b/IO/CatalystConduit/vtkConduitSource.cxx index 1ecda671282a..1be70906d531 100644 --- a/IO/CatalystConduit/vtkConduitSource.cxx +++ b/IO/CatalystConduit/vtkConduitSource.cxx @@ -424,51 +424,32 @@ bool AddGlobalData(vtkDataObject* output, const conduit_cpp::Node& globalFields) { auto fd = output->GetFieldData(); - // this can be made very generic. For now, I am only processing known - // fields. - if (globalFields.has_path("time")) - { - // for compatibility with older Catalyst scripts. - vtkNew timeValue; - timeValue->SetName("TimeValue"); - timeValue->SetNumberOfTuples(1); - timeValue->SetTypedComponent(0, 0, globalFields["time"].to_float64()); - fd->AddArray(timeValue); - - // "time" is a better name than "TimeValue" - vtkNew time; - time->SetName("time"); - time->SetNumberOfTuples(1); - time->SetTypedComponent(0, 0, globalFields["time"].to_float64()); - fd->AddArray(time); - - // let's also set DATA_TIME_STEP. - output->GetInformation()->Set( - vtkDataObject::DATA_TIME_STEP(), globalFields["time"].to_float64()); - } - if (globalFields.has_path("cycle")) - { - vtkNew cycle; - cycle->SetName("cycle"); - cycle->SetNumberOfTuples(1); - cycle->SetTypedComponent(0, 0, globalFields["cycle"].to_int64()); - fd->AddArray(cycle); - } - if (globalFields.has_path("timestep")) - { - vtkNew timestep; - timestep->SetName("timestep"); - timestep->SetNumberOfTuples(1); - timestep->SetTypedComponent(0, 0, globalFields["timestep"].to_int64()); - fd->AddArray(timestep); - } - if (globalFields.has_path("channel")) - { - vtkNew channel; - channel->SetName("__CatalystChannel__"); - channel->InsertNextValue(globalFields["channel"].as_string().c_str()); - fd->AddArray(channel); + const conduit_index_t nchildren = globalFields.number_of_children(); + for (conduit_index_t idx = 0; idx < nchildren; idx++) + { + const auto child = globalFields.child(idx); + std::string fieldName = child.name(); + + if (child.dtype().is_string()) + { + vtkNew stringArray; + stringArray->SetName(fieldName.c_str()); + stringArray->InsertNextValue(child.as_string().c_str()); + fd->AddArray(stringArray); + continue; + } + + auto array = + vtkConduitArrayUtilities::MCArrayToVTKArray(conduit_cpp::c_node(&child), fieldName); + fd->AddArray(array); + + if ((fieldName == "time" || fieldName == "TimeValue") && child.dtype().is_float()) + { + // let's also set DATA_TIME_STEP. + output->GetInformation()->Set(vtkDataObject::DATA_TIME_STEP(), child.to_float64()); + } } + return true; } -- GitLab From f97b45fd4fcbcae8d7208accaa10ea20f0224bc6 Mon Sep 17 00:00:00 2001 From: Nicolas Vuaille Date: Wed, 23 Feb 2022 14:32:11 +0100 Subject: [PATCH 0104/1015] Add catalyst dependency in CI --- .gitlab/ci/configure_common.cmake | 2 + .gitlab/ci/configure_el8.cmake | 3 ++ ...e_fedora34_cuda_mpi_offscreen_osmesa.cmake | 3 ++ .gitlab/ci/configure_macos.cmake | 1 + .gitlab/ci/configure_wheel.cmake | 1 + .gitlab/ci/configure_windows.cmake | 1 + .gitlab/ci/docker/fedora34/Dockerfile | 3 ++ .../ci/docker/fedora34/install_catalyst.sh | 45 +++++++++++++++++++ 8 files changed, 59 insertions(+) create mode 100755 .gitlab/ci/docker/fedora34/install_catalyst.sh diff --git a/.gitlab/ci/configure_common.cmake b/.gitlab/ci/configure_common.cmake index 5069962d749e..aa1abc3f54cc 100644 --- a/.gitlab/ci/configure_common.cmake +++ b/.gitlab/ci/configure_common.cmake @@ -13,6 +13,8 @@ set(VTK_DEBUG_LEAKS ON CACHE BOOL "") set(VTK_USE_LARGE_DATA ON CACHE BOOL "") set(VTK_LINKER_FATAL_WARNINGS ON CACHE BOOL "") +set(VTK_ENABLE_CATALYST ON CACHE BOOL "") + # The install trees on CI machines need help since dependencies are not in a # default location. set(VTK_RELOCATABLE_INSTALL ON CACHE BOOL "") diff --git a/.gitlab/ci/configure_el8.cmake b/.gitlab/ci/configure_el8.cmake index d0fbc3f5f83e..270082808a11 100644 --- a/.gitlab/ci/configure_el8.cmake +++ b/.gitlab/ci/configure_el8.cmake @@ -1 +1,4 @@ +# catalyst is not installed on el8 image +set(VTK_ENABLE_CATALYST OFF CACHE BOOL "") + include("${CMAKE_CURRENT_LIST_DIR}/configure_fedora_common.cmake") diff --git a/.gitlab/ci/configure_fedora34_cuda_mpi_offscreen_osmesa.cmake b/.gitlab/ci/configure_fedora34_cuda_mpi_offscreen_osmesa.cmake index 81d0b1703707..6013af2093b2 100644 --- a/.gitlab/ci/configure_fedora34_cuda_mpi_offscreen_osmesa.cmake +++ b/.gitlab/ci/configure_fedora34_cuda_mpi_offscreen_osmesa.cmake @@ -5,4 +5,7 @@ set(VTK_MODULE_ENABLE_VTK_fides NO CACHE STRING "") # Lowest-common denominator. set(VTKm_CUDA_Architecture "pascal" CACHE STRING "") +# catalyst is not installed on cuda image +set(VTK_ENABLE_CATALYST OFF CACHE BOOL "") + include("${CMAKE_CURRENT_LIST_DIR}/configure_fedora34.cmake") diff --git a/.gitlab/ci/configure_macos.cmake b/.gitlab/ci/configure_macos.cmake index 5e5d2c38b2a5..567c7085eba3 100644 --- a/.gitlab/ci/configure_macos.cmake +++ b/.gitlab/ci/configure_macos.cmake @@ -22,6 +22,7 @@ set(VTK_MODULE_ENABLE_VTK_RenderingOpenXR NO CACHE STRING "") # OpenXR set(VTK_MODULE_ENABLE_VTK_RenderingRayTracing NO CACHE STRING "") # ospray set(VTK_MODULE_ENABLE_VTK_fides NO CACHE STRING "") # adios set(VTK_MODULE_ENABLE_VTK_xdmf3 NO CACHE STRING "") # boost +set(VTK_ENABLE_CATALYST OFF CACHE BOOL "") # catalyst # Add rpath entries for Xcode frameworks. set(CMAKE_BUILD_RPATH "$ENV{DEVELOPER_DIR}/Library/Frameworks" CACHE STRING "") diff --git a/.gitlab/ci/configure_wheel.cmake b/.gitlab/ci/configure_wheel.cmake index 3362dcdc8e5c..4c62249b7e38 100644 --- a/.gitlab/ci/configure_wheel.cmake +++ b/.gitlab/ci/configure_wheel.cmake @@ -59,5 +59,6 @@ set(VTK_MODULE_ENABLE_VTK_RenderingOpenXR NO CACHE STRING "") # OpenXR set(VTK_MODULE_ENABLE_VTK_RenderingRayTracing NO CACHE STRING "") # OSPRay set(VTK_MODULE_ENABLE_VTK_fides NO CACHE STRING "") # ADIOS2 set(VTK_MODULE_ENABLE_VTK_xdmf3 NO CACHE STRING "") # Boost +set(VTK_ENABLE_CATALYST OFF CACHE BOOL "") # catalyst include("${CMAKE_CURRENT_LIST_DIR}/configure_common.cmake") diff --git a/.gitlab/ci/configure_windows.cmake b/.gitlab/ci/configure_windows.cmake index 72c471d821a4..6e01935a3e0c 100644 --- a/.gitlab/ci/configure_windows.cmake +++ b/.gitlab/ci/configure_windows.cmake @@ -23,6 +23,7 @@ set(VTK_MODULE_ENABLE_VTK_RenderingOpenXR NO CACHE STRING "") # openxr set(VTK_MODULE_ENABLE_VTK_RenderingRayTracing NO CACHE STRING "") # ospray set(VTK_MODULE_ENABLE_VTK_fides NO CACHE STRING "") # adios set(VTK_MODULE_ENABLE_VTK_xdmf3 NO CACHE STRING "") # boost +set(VTK_ENABLE_CATALYST OFF CACHE BOOL "") # catalyst # Windows-only features set(VTK_USE_MICROSOFT_MEDIA_FOUNDATION ON CACHE BOOL "") diff --git a/.gitlab/ci/docker/fedora34/Dockerfile b/.gitlab/ci/docker/fedora34/Dockerfile index 606e66614108..8d7f6f5d0aa3 100644 --- a/.gitlab/ci/docker/fedora34/Dockerfile +++ b/.gitlab/ci/docker/fedora34/Dockerfile @@ -13,6 +13,9 @@ RUN sh /root/install_adios.sh COPY install_openvr.sh /root/install_openvr.sh RUN sh /root/install_openvr.sh +COPY install_catalyst.sh /root/install_catalyst.sh +RUN sh /root/install_catalyst.sh + # XXX(fedora34): ispc is too old in Fedora 34 # COPY install_ospray.sh /root/install_ospray.sh # RUN sh /root/install_ospray.sh diff --git a/.gitlab/ci/docker/fedora34/install_catalyst.sh b/.gitlab/ci/docker/fedora34/install_catalyst.sh new file mode 100755 index 000000000000..fccb14b08027 --- /dev/null +++ b/.gitlab/ci/docker/fedora34/install_catalyst.sh @@ -0,0 +1,45 @@ +#!/bin/sh + +readonly catalyst_repo="https://gitlab.kitware.com/paraview/catalyst" +# we are pre-release, use the most recent commit (Feb 23, 2022) +readonly catalyst_commit="3f7871c0a2e737cb9ed35fc1c2208456fcc00a0e" + +readonly catalyst_root="$HOME/catalyst" +readonly catalyst_src="$catalyst_root/src" +readonly catalyst_build_root="$catalyst_root/build" + +git clone -b "$catalyst_commit" "$catalyst_repo" "$catalyst_src" + +catalyst_build () { + local subdir="$1" + shift + + local prefix="$1" + shift + + cmake -GNinja \ + -S "$catalyst_src" \ + -B "$catalyst_build_root/$subdir" \ + -DCATALYST_BUILD_SHARED_LIBS=ON \ + -DCATALYST_BUILD_TESTING=OFF \ + -DCMAKE_BUILD_TYPE=Release \ + "-DCMAKE_INSTALL_PREFIX=$prefix" \ + "$@" + cmake --build "$catalyst_build_root/$subdir" --target install +} + +# MPI-less +catalyst_build nompi /usr \ + -DCATALYST_USE_MPI=OFF + +# MPICH +catalyst_build mpich /usr/lib64/mpich \ + -DCATALYST_USE_MPI=ON \ + -DCMAKE_INSTALL_LIBDIR=lib + +# OpenMPI +catalyst_build openmpi /usr/lib64/openmpi \ + -DCATALYST_USE_MPI=ON \ + -DCMAKE_INSTALL_LIBDIR=lib + +rm -rf "$catalyst_root" -- GitLab From 63e5c78b065b67f3687dc8ee30d7fe3eb17dea9c Mon Sep 17 00:00:00 2001 From: Nicolas Vuaille Date: Fri, 11 Mar 2022 09:27:04 +0100 Subject: [PATCH 0105/1015] Update linux docker image for catalyst dependency --- .gitlab/os-linux.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab/os-linux.yml b/.gitlab/os-linux.yml index 6457652a2c79..c3b4f6982e8e 100644 --- a/.gitlab/os-linux.yml +++ b/.gitlab/os-linux.yml @@ -50,7 +50,7 @@ .fedora34: extends: .linux - image: "kitware/vtk:ci-fedora34-20211020" + image: "kitware/vtk:ci-fedora34-20220310" .el8_icc: extends: .linux -- GitLab From cb7723bda33f9c342b0d3031a1e39a141f18cfad Mon Sep 17 00:00:00 2001 From: Nicolas Vuaille Date: Wed, 2 Mar 2022 14:57:18 +0100 Subject: [PATCH 0106/1015] Introduce VTKCatalyst implementation * just forward call to the stub implementation --- CMake/vtkInstallCMakePackage.cmake | 9 ++++ CMakeLists.txt | 15 ++++++ Documentation/dev/build.md | 2 + .../release/dev/CatalystConduitModule.md | 2 + IO/CatalystConduit/CMakeLists.txt | 7 ++- IO/CatalystConduit/Catalyst/CMakeLists.txt | 38 ++++++++++++++ IO/CatalystConduit/Catalyst/VTKCatalyst.cxx | 52 +++++++++++++++++++ 7 files changed, 124 insertions(+), 1 deletion(-) create mode 100644 IO/CatalystConduit/Catalyst/CMakeLists.txt create mode 100644 IO/CatalystConduit/Catalyst/VTKCatalyst.cxx diff --git a/CMake/vtkInstallCMakePackage.cmake b/CMake/vtkInstallCMakePackage.cmake index b664f2272a5c..dae8f9e5cb77 100644 --- a/CMake/vtkInstallCMakePackage.cmake +++ b/CMake/vtkInstallCMakePackage.cmake @@ -6,6 +6,15 @@ if (NOT (DEFINED vtk_cmake_dir AND "vtkInstallCMakePackage is missing input variables.") endif () +set(vtk_has_catalyst 0) +set(vtk_catalyst_directory "") +if (TARGET VTK::catalyst-vtk) + set(vtk_has_catalyst 1) + get_property(vtk_catalyst_directory GLOBAL + PROPERTY vtk_catalyst_directory) +endif () + + set(vtk_all_components) foreach (vtk_module IN LISTS vtk_modules) string(REPLACE "VTK::" "" vtk_component "${vtk_module}") diff --git a/CMakeLists.txt b/CMakeLists.txt index 14be7c98b5e0..a9d56e765cdf 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -139,6 +139,11 @@ endif() option(VTK_ENABLE_LOGGING "Enable logging support." ON) mark_as_advanced(VTK_ENABLE_LOGGING) +#----------------------------------------------------------------------------- +# Add an option to enable/disable catalyst2 support. +option(VTK_ENABLE_CATALYST "Build IOCatalystConduit module and VTK catalyst implementation." OFF) +mark_as_advanced(VTK_ENABLE_CATALYST) + include(vtkEncodeString) # Set up our directory structure for output libraries and binaries @@ -192,6 +197,15 @@ if (VTK_ENABLE_LOGGING) set("_vtk_module_reason_VTK::loguru" "via `VTK_ENABLE_LOGGING`") endif () +if (VTK_ENABLE_CATALYST) + list(APPEND vtk_request_modules + VTK::IOCatalystConduit) +else() + list(APPEND vtk_rejected_modules + VTK::IOCatalystConduit) +endif() +set("_vtk_module_reason_VTK::IOCatalystConduit" + "via `VTK_ENABLE_CATALYST`") if (VTK_BUILD_TESTING) list(APPEND vtk_requested_modules @@ -405,6 +419,7 @@ vtk_module_build( TARGET_SPECIFIC_COMPONENTS "${VTK_TARGET_SPECIFIC_COMPONENTS}" TEST_INPUT_DATA_DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/Testing" TEST_OUTPUT_DATA_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/ExternalData/Testing") + include(vtkModuleJson) vtk_module_json( MODULES ${vtk_modules} diff --git a/Documentation/dev/build.md b/Documentation/dev/build.md index f839b73b7d78..77e04d54b9c1 100644 --- a/Documentation/dev/build.md +++ b/Documentation/dev/build.md @@ -213,6 +213,8 @@ Less common, but variables which may be of interest to some: will be implemented by default. Must be either `Sequential`, `STDThread`, `OpenMP` or `TBB`. The backend can be changed at runtime if the desired backend has his option `VTK_SMP_ENABLE_` set to `ON`. + * `VTK_ENABLE_CATALYST` (default `OFF`): Enable the CatlystConduit module + and build the VTK Catalyst implementation. Depends on an external Catalyst. More advanced options: diff --git a/Documentation/release/dev/CatalystConduitModule.md b/Documentation/release/dev/CatalystConduitModule.md index 2025e8d7f4fa..3c3da09c230e 100644 --- a/Documentation/release/dev/CatalystConduitModule.md +++ b/Documentation/release/dev/CatalystConduitModule.md @@ -11,3 +11,5 @@ Main content: * `vtkConduitSource` : a VTK source that can generate a `vtkPartionedDataSet` or `vtkPartionedDataSetCollection` from a given Conduit node. It also has an option to output `vtkMultiBlockDataSet` for historical reason. * `vtkDataObjectToConduit` is a utility namespace to get a conduit node from any `vtkDataObject`. + + Also note that VTK now provide a stub implementation of Catalyst. diff --git a/IO/CatalystConduit/CMakeLists.txt b/IO/CatalystConduit/CMakeLists.txt index a82cd04593d0..87909d1cf02d 100644 --- a/IO/CatalystConduit/CMakeLists.txt +++ b/IO/CatalystConduit/CMakeLists.txt @@ -3,7 +3,10 @@ set(classes vtkConduitSource vtkDataObjectToConduit) -vtk_module_find_package(PACKAGE catalyst) +# SDK component is required for Catalyst implementation (see Catalyst subdir) +vtk_module_find_package(PACKAGE catalyst VERSION 2.0 COMPONENTS SDK) + +set_property(GLOBAL PROPERTY vtk_catalyst_dir_primary "${catalyst_DIR}") vtk_module_add_module(VTK::IOCatalystConduit CLASSES ${classes}) @@ -11,3 +14,5 @@ vtk_module_add_module(VTK::IOCatalystConduit vtk_module_link(VTK::IOCatalystConduit PUBLIC catalyst::catalyst) + +add_subdirectory(Catalyst) diff --git a/IO/CatalystConduit/Catalyst/CMakeLists.txt b/IO/CatalystConduit/Catalyst/CMakeLists.txt new file mode 100644 index 000000000000..f4858f85334c --- /dev/null +++ b/IO/CatalystConduit/Catalyst/CMakeLists.txt @@ -0,0 +1,38 @@ +if (WIN32) + set(catalyst_library_destination + "${_vtk_build_RUNTIME_DESTINATION}/catalyst") +else () + set(catalyst_library_destination + "${_vtk_build_LIBRARY_DESTINATION}/catalyst") + file(RELATIVE_PATH _catalyst_impl_relpath + "/prefix/${catalyst_library_destination}" + "/prefix/${_vtk_build_LIBRARY_DESTINATION}") + if (APPLE) + set(catalyst_rel_rpath + "@loader_path/${_catalyst_impl_relpath}") + else () + set(catalyst_rel_rpath + "$ORIGIN/${_catalyst_impl_relpath}") + endif () + + list(APPEND CMAKE_INSTALL_RPATH + "${catalyst_rel_rpath}") +endif () + +catalyst_implementation( + NAME vtk + TARGET catalyst-vtk + EXPORT "${_vtk_build_INSTALL_EXPORT}" + LIBRARY_DESTINATION + "${catalyst_library_destination}" + SOURCES + VTKCatalyst.cxx + CATALYST_TARGET catalyst::catalyst) + +add_library(VTK::catalyst-vtk ALIAS catalyst-vtk) + +# Clear the `-pvVERSION` suffix (if any). +set(_vtk_build_LIBRARY_NAME_SUFFIX "") +# Clear version information. +set(_vtk_build_VERSION "") +set(_vtk_build_SOVERSION "") diff --git a/IO/CatalystConduit/Catalyst/VTKCatalyst.cxx b/IO/CatalystConduit/Catalyst/VTKCatalyst.cxx new file mode 100644 index 000000000000..93c8557d6ba1 --- /dev/null +++ b/IO/CatalystConduit/Catalyst/VTKCatalyst.cxx @@ -0,0 +1,52 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: VTKCatalyst.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ + +#include +#include +#include + +#include "catalyst_impl_vtk.h" + +//----------------------------------------------------------------------------- +enum catalyst_status catalyst_initialize_vtk(const conduit_node* params) +{ + return catalyst_stub_initialize(params); +} + +//----------------------------------------------------------------------------- +enum catalyst_status catalyst_execute_vtk(const conduit_node* params) +{ + return catalyst_stub_execute(params); +} + +//----------------------------------------------------------------------------- +enum catalyst_status catalyst_finalize_vtk(const conduit_node* params) +{ + return catalyst_stub_finalize(params); +} + +//----------------------------------------------------------------------------- +enum catalyst_status catalyst_about_vtk(conduit_node* params) +{ + catalyst_status status = catalyst_stub_about(params); + conduit_node_set_path_char8_str(params, "catalyst/implementation", "vtk"); + return status; +} + +//----------------------------------------------------------------------------- +enum catalyst_status catalyst_results_vtk(conduit_node* params) +{ + return catalyst_stub_results(params); +} -- GitLab From a5efecdb6f753d7d12d495781831ac734f541c45 Mon Sep 17 00:00:00 2001 From: Will Schroeder Date: Fri, 6 May 2022 05:18:27 -0400 Subject: [PATCH 0107/1015] Expose the vtkPolygon::Tolerance data member Expose the vtkPolygon::Tolerance data member for additional control over the triangulation process of n-sided polygons (where n>4 since triangles and quads have specialized methods). --- Filters/Core/vtkTriangleFilter.cxx | 11 ++++++++--- Filters/Core/vtkTriangleFilter.h | 16 ++++++++++++++++ 2 files changed, 24 insertions(+), 3 deletions(-) diff --git a/Filters/Core/vtkTriangleFilter.cxx b/Filters/Core/vtkTriangleFilter.cxx index 2966ff44d2bd..57663eb38304 100644 --- a/Filters/Core/vtkTriangleFilter.cxx +++ b/Filters/Core/vtkTriangleFilter.cxx @@ -47,7 +47,7 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), vtkCellData* inCD = input->GetCellData(); vtkCellData* outCD = output->GetCellData(); vtkIdType updateInterval; - vtkCellArray *cells, *newCells; + vtkCellArray* cells; vtkPoints* inPts = input->GetPoints(); int abort = 0; @@ -144,9 +144,14 @@ int vtkTriangleFilter::RequestData(vtkInformation* vtkNotUsed(request), vtkNew ptIds; ptIds->Allocate(VTK_CELL_SIZE); int numSimplices; - vtkNew poly; - poly->SetTolerance(1.0e-08); // Tighten tessellation tolerance vtkIdType triPts[3]; + // It may be necessary to specify a custom tessellation + // tolerance. + vtkNew poly; + if (this->Tolerance > 0.0) + { + poly->SetTolerance(this->Tolerance); // Tighten tessellation tolerance + } for (cells->InitTraversal(); cells->GetNextCell(npts, pts) && !abort; cellNum++) { diff --git a/Filters/Core/vtkTriangleFilter.h b/Filters/Core/vtkTriangleFilter.h index 3276dba5ebe9..f69ff282aee2 100644 --- a/Filters/Core/vtkTriangleFilter.h +++ b/Filters/Core/vtkTriangleFilter.h @@ -59,10 +59,25 @@ public: vtkGetMacro(PassLines, vtkTypeBool); ///@} + ///@{ + /** + * Optionally specify the polygon triangulation tolerance to use. This + * simply passes the tolerance to the internal vtkPolygon::Tolerance used + * for triangulation of polygons. This is for advanced usage, and + * generally does not need to be set unless tessellation of n-sided + * polygons with n>4 is required, and special accuracy requirements are + * needed. Note that by default if a value <=0 is specified, then the + * default vtkPolygon::Tolerance is used. + */ + vtkSetMacro(Tolerance, double); + vtkGetMacro(Tolerance, double); + ///@} + protected: vtkTriangleFilter() : PassVerts(1) , PassLines(1) + , Tolerance(-1.0) // use default vtkPolygon::Tolerance { } ~vtkTriangleFilter() override = default; @@ -72,6 +87,7 @@ protected: vtkTypeBool PassVerts; vtkTypeBool PassLines; + double Tolerance; private: vtkTriangleFilter(const vtkTriangleFilter&) = delete; -- GitLab From 8f1c8904401b38b81fa54290c07e19957daf63cc Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Fri, 6 May 2022 13:50:19 -0400 Subject: [PATCH 0108/1015] vtkFieldData::GetRange bug fix. There was a bug if an array's number of components get changed at some point withing a `vtkFieldData`. We need to check, when fetching the range, if the number of components has changed. --- Common/DataModel/vtkFieldData.cxx | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/Common/DataModel/vtkFieldData.cxx b/Common/DataModel/vtkFieldData.cxx index 267a4763b410..8402d02a4735 100644 --- a/Common/DataModel/vtkFieldData.cxx +++ b/Common/DataModel/vtkFieldData.cxx @@ -52,6 +52,14 @@ bool GetRangeImpl(vtkFieldData* self, int index, double range[2], int comp, CachedGhostRangeType& cache = ranges[index][comp == -1 ? 0 : 1]; vtkMTimeType& arrayTime = std::get<0>(cache); vtkMTimeType& ghostTime = std::get<1>(cache); + + // It is possible that the number of components get changed at some point. + // If it happens, just update the cache size. The range will be recomputed no matter + // what thanks to the time stamp + if (comp != -1) + { + std::get<2>(cache).resize(array->GetNumberOfComponents() * 2); + } double* cachedRange = std::get<2>(cache).data(); vtkUnsignedCharArray* ghosts = self->GetGhostArray(); -- GitLab From b2aefba17da9ece59824e36260d2f20f8ed52d55 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sat, 7 May 2022 00:01:35 -0400 Subject: [PATCH 0109/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index a154cf4b8df7..d1619da694c6 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220506) +set(VTK_BUILD_VERSION 20220507) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 0a1b70b8a90217cf6633c07466ebe44140ab179c Mon Sep 17 00:00:00 2001 From: Chris Harris Date: Mon, 2 May 2022 13:26:34 -0400 Subject: [PATCH 0110/1015] Add support for uploading wheel SDKs Wheels builds are now installed and the contents are used to generate a tarball that is uploaded as an articfact. One a week the tarball is also rsynced to vtk.org:/files/wheel-sdks/ Co-authored-by: Chris Harris Co-authored-by: Patrick Avery --- .gitlab-ci.yml | 52 ++++++++++++++++++++++++++ .gitlab/artifacts.yml | 1 + .gitlab/issue_templates/new-release.md | 2 + .gitlab/os-linux.yml | 9 +++++ .gitlab/os-macos.yml | 13 +++++++ .gitlab/os-windows.yml | 8 ++++ .gitlab/upload.yml | 18 +++++++++ 7 files changed, 103 insertions(+) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 7779d1e3efd0..5936193bba54 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -448,6 +448,58 @@ wheel:vtk:upload: - wheel-windows-python310-x86_64:build - wheel-windows-python310-x86_64:test +wheel-sdk:upload: + extends: + - .rsync_upload_wheel_sdk + - .weekly_upload_only + dependencies: + - wheel-linux-python37-x86_64:build + - wheel-linux-python38-x86_64:build + - wheel-linux-python39-x86_64:build + - wheel-linux-python310-x86_64:build + - wheel-macos-python37-x86_64:build + - wheel-macos-python38-x86_64:build + - wheel-macos-python39-arm64:build + - wheel-macos-python39-x86_64:build + - wheel-macos-python310-arm64:build + - wheel-macos-python310-x86_64:build + - wheel-windows-python37-x86_64:build + - wheel-windows-python38-x86_64:build + - wheel-windows-python39-x86_64:build + - wheel-windows-python310-x86_64:build + needs: + - wheel-linux-python37-x86_64:build + - wheel-linux-python37-x86_64:test + - wheel-linux-python38-x86_64:build + - wheel-linux-python38-x86_64:test + - wheel-linux-python39-x86_64:build + - wheel-linux-python39-x86_64:test + - wheel-linux-python310-x86_64:build + - wheel-linux-python310-x86_64:test + - wheel-macos-python37-x86_64:build + - wheel-macos-python37-x86_64:test + - wheel-macos-python38-x86_64:build + - wheel-macos-python38-x86_64:test + - wheel-macos-python39-arm64:build + - wheel-macos-python39-arm64:test + - wheel-macos-python39-x86_64:build + - wheel-macos-python39-x86_64:test + - wheel-macos-python310-arm64:build + - wheel-macos-python310-arm64:test + - wheel-macos-python310-x86_64:build + - wheel-macos-python310-x86_64:test + - wheel-windows-python37-x86_64:build + - wheel-windows-python37-x86_64:test + - wheel-windows-python38-x86_64:build + - wheel-windows-python38-x86_64:test + - wheel-windows-python39-x86_64:build + - wheel-windows-python39-x86_64:test + - wheel-windows-python310-x86_64:build + - wheel-windows-python310-x86_64:test + variables: + RSYNC_SOURCE: build/*-sdk.tar.xz + RSYNC_DESTINATION: wheel-sdks/ + ## Static analysis builds fedora34-tidy:build: diff --git a/.gitlab/artifacts.yml b/.gitlab/artifacts.yml index 1541b0b2258d..4ca0beade127 100644 --- a/.gitlab/artifacts.yml +++ b/.gitlab/artifacts.yml @@ -108,6 +108,7 @@ - wheel_output.log - build/dist/*.whl + - build/*-sdk.tar.xz .cmake_release_artifacts: artifacts: diff --git a/.gitlab/issue_templates/new-release.md b/.gitlab/issue_templates/new-release.md index 437428468b22..5d85a9aa0d32 100644 --- a/.gitlab/issue_templates/new-release.md +++ b/.gitlab/issue_templates/new-release.md @@ -67,8 +67,10 @@ git commit -m 'Update version number to @VERSION@@RC@' CMake/vtkVersion.cmake - [ ] Source (from the `build:source` CI job in the tag pipeline) - [ ] Documentation (from the `release-prep:documentation` CI job in the tag pipeline) - [ ] Wheels (from the `build:wheel-*` jobs). + - [ ] Wheel SDKs (from the `build:wheel-*` jobs (`*.-sdk.tar.xz`)). - Upload assets to `vtk.org` - [ ] `rsync -rptv $tarballs $wheels user@host:vtk_release/@MAJOR@.@MINOR@/` + - [ ] `rsync -rptv $wheel_sdks user@host:wheel-sdks/` - [ ] Update `vtk.org/download` with the new release (email `comm@kitware.com` with filenames and hashes) - Software process updates (these can all be done independently) diff --git a/.gitlab/os-linux.yml b/.gitlab/os-linux.yml index c3b4f6982e8e..a0fd02ce42bd 100644 --- a/.gitlab/os-linux.yml +++ b/.gitlab/os-linux.yml @@ -12,6 +12,7 @@ variables: GIT_CLONE_PATH: $CI_BUILDS_DIR/gitlab-kitware-sciviz-ci + VTK_INSTALL: 1 .wheel_linux36_x86_64: extends: .manylinux2014_x86_64 @@ -394,6 +395,14 @@ - auditwheel repair dist/*.whl >> $GIT_CLONE_PATH/wheel_output.log - mv -v dist/ dist-orig/ - mv -v wheelhouse/ dist/ + - pushd . + - cd dist + - 'sdk_name="$( ls *.whl | sed -e "s/\.whl/-sdk/" )"' + - popd + - mv install $sdk_name + - tar czf $sdk_name.tar.xz $sdk_name + - mv $sdk_name install + interruptible: true .cmake_test_wheel_linux: diff --git a/.gitlab/os-macos.yml b/.gitlab/os-macos.yml index 64812354efc6..871ab114ccd9 100644 --- a/.gitlab/os-macos.yml +++ b/.gitlab/os-macos.yml @@ -12,6 +12,9 @@ .wheel_macos_arm64: extends: .macos + variables: + VTK_INSTALL: 1 + .wheel_macos39_arm64: extends: .wheel_macos_arm64 @@ -31,6 +34,9 @@ .wheel_macos_x86_64: extends: .macos + variables: + VTK_INSTALL: 1 + .wheel_macos36_x86_64: extends: .wheel_macos_x86_64 @@ -213,6 +219,13 @@ - "$PYTHON_PREFIX/bin/python$PYTHON_VERSION_SUFFIX -m venv venv" - venv/bin/pip install wheel - venv/bin/python3 setup.py bdist_wheel + - pushd . + - cd dist + - 'sdk_name="$( ls *.whl | sed -e "s/\.whl/-sdk/" )"' + - popd + - mv install $sdk_name + - tar czf $sdk_name.tar.xz $sdk_name + - mv $sdk_name install # XXX: `delocate` can't handle `@loader_path` or do recursive # dependency scanning. Ignore it and just do it manually because # apparently VTK is the most complicated wheel in the world. diff --git a/.gitlab/os-windows.yml b/.gitlab/os-windows.yml index 9a0536f32e3f..4d3da6500e3d 100644 --- a/.gitlab/os-windows.yml +++ b/.gitlab/os-windows.yml @@ -14,6 +14,7 @@ VCVARSALL: "${VS160COMNTOOLS}\\..\\..\\VC\\Auxiliary\\Build\\vcvarsall.bat" VCVARSPLATFORM: "x64" VCVARSVERSION: "14.28.29333" + VTK_INSTALL: 1 .wheel_windows36_x86_64: extends: .wheel_windows_x86_64 @@ -255,6 +256,13 @@ - . .\venv\Scripts\Activate.ps1 - pip install wheel - python setup.py bdist_wheel + - pushd . + - cd dist + - $sdk_name = (ls *.whl).Name.replace('.whl', '-sdk') + - popd + - mv install $sdk_name + - tar czf "$sdk_name.tar.xz" "$sdk_name" + - mv $sdk_name install # XXX(delvewheel): It is finding 32bit Visual Studio libraries and # bailing instead of continuing to search for 64bit versions of the # DLL. diff --git a/.gitlab/upload.yml b/.gitlab/upload.yml index d603915702ff..fea8359ebca6 100644 --- a/.gitlab/upload.yml +++ b/.gitlab/upload.yml @@ -17,6 +17,24 @@ - ssh-keygen -y -f $RSYNC_BINARY_KEY > $RSYNC_BINARY_KEY.pub - rsync -tv --recursive -e "ssh -i $RSYNC_BINARY_KEY -o StrictHostKeyChecking=no" build/$SRC_SUBDIR kitware@web.kitware.com:$RSYNC_DESTINATION/ +.rsync_upload_wheel_sdk: + image: "fedora:34" + stage: upload + tags: + - docker + - linux + - build + environment: + name: rsync-upload-wheel-sdk + + script: + - ls build/ + - dnf install -y --setopt=install_weak_deps=False rsync openssh-clients + - chmod 400 $RSYNC_WHEEL_SDK_KEY + - ssh-keygen -y -f $RSYNC_WHEEL_SDK_KEY > $RSYNC_WHEEL_SDK_KEY.pub + - rsync -tv --recursive -e "ssh -i $RSYNC_WHEEL_SDK_KEY -o StrictHostKeyChecking=no" $RSYNC_SOURCE kitware@vtk.org:$RSYNC_DESTINATION/ + + .pypi_upload: image: "fedora:34" stage: upload -- GitLab From c0a315062e214dfd3d2d8cb8159ef5e84db5094b Mon Sep 17 00:00:00 2001 From: Chris Harris Date: Wed, 4 May 2022 16:11:20 -0400 Subject: [PATCH 0111/1015] Upload wheel SDKs for release directory as well --- .gitlab/issue_templates/new-release.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab/issue_templates/new-release.md b/.gitlab/issue_templates/new-release.md index 5d85a9aa0d32..a59fefd2ef79 100644 --- a/.gitlab/issue_templates/new-release.md +++ b/.gitlab/issue_templates/new-release.md @@ -69,7 +69,7 @@ git commit -m 'Update version number to @VERSION@@RC@' CMake/vtkVersion.cmake - [ ] Wheels (from the `build:wheel-*` jobs). - [ ] Wheel SDKs (from the `build:wheel-*` jobs (`*.-sdk.tar.xz`)). - Upload assets to `vtk.org` - - [ ] `rsync -rptv $tarballs $wheels user@host:vtk_release/@MAJOR@.@MINOR@/` + - [ ] `rsync -rptv $tarballs $wheels $wheel_sdks user@host:vtk_release/@MAJOR@.@MINOR@/` - [ ] `rsync -rptv $wheel_sdks user@host:wheel-sdks/` - [ ] Update `vtk.org/download` with the new release (email `comm@kitware.com` with filenames and hashes) -- GitLab From 651075cd5f496b362be524ae58c60e0b3b25642f Mon Sep 17 00:00:00 2001 From: Chris Harris Date: Wed, 4 May 2022 16:13:23 -0400 Subject: [PATCH 0112/1015] Upload 3.6 wheel SDKs as they are already built --- .gitlab-ci.yml | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 5936193bba54..e6fccf959d0b 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -453,21 +453,25 @@ wheel-sdk:upload: - .rsync_upload_wheel_sdk - .weekly_upload_only dependencies: + - wheel-linux-python36-x86_64:build - wheel-linux-python37-x86_64:build - wheel-linux-python38-x86_64:build - wheel-linux-python39-x86_64:build - wheel-linux-python310-x86_64:build + - wheel-macos-python36-x86_64:build - wheel-macos-python37-x86_64:build - wheel-macos-python38-x86_64:build - wheel-macos-python39-arm64:build - wheel-macos-python39-x86_64:build - wheel-macos-python310-arm64:build - wheel-macos-python310-x86_64:build + - wheel-windows-python36-x86_64:build - wheel-windows-python37-x86_64:build - wheel-windows-python38-x86_64:build - wheel-windows-python39-x86_64:build - wheel-windows-python310-x86_64:build needs: + - wheel-linux-python36-x86_64:build - wheel-linux-python37-x86_64:build - wheel-linux-python37-x86_64:test - wheel-linux-python38-x86_64:build @@ -476,6 +480,8 @@ wheel-sdk:upload: - wheel-linux-python39-x86_64:test - wheel-linux-python310-x86_64:build - wheel-linux-python310-x86_64:test + - wheel-macos-python36-x86_64:build + - wheel-macos-python36-x86_64:test - wheel-macos-python37-x86_64:build - wheel-macos-python37-x86_64:test - wheel-macos-python38-x86_64:build @@ -488,6 +494,7 @@ wheel-sdk:upload: - wheel-macos-python310-arm64:test - wheel-macos-python310-x86_64:build - wheel-macos-python310-x86_64:test + - wheel-windows-python36-x86_64:build - wheel-windows-python37-x86_64:build - wheel-windows-python37-x86_64:test - wheel-windows-python38-x86_64:build -- GitLab From 5e4eb957f5de12e54bac2c8d6f83207000a5dd70 Mon Sep 17 00:00:00 2001 From: Patrick Avery Date: Wed, 4 May 2022 20:33:53 -0500 Subject: [PATCH 0113/1015] Use python script to make sdk tarball Signed-off-by: Patrick Avery --- .gitlab/ci/wheel_sdk.py | 15 +++++++++++++++ .gitlab/os-linux.yml | 8 +------- .gitlab/os-macos.yml | 8 +------- .gitlab/os-windows.yml | 8 +------- 4 files changed, 18 insertions(+), 21 deletions(-) create mode 100644 .gitlab/ci/wheel_sdk.py diff --git a/.gitlab/ci/wheel_sdk.py b/.gitlab/ci/wheel_sdk.py new file mode 100644 index 000000000000..34ddea63867b --- /dev/null +++ b/.gitlab/ci/wheel_sdk.py @@ -0,0 +1,15 @@ +from pathlib import Path +import subprocess + +dist_path = Path('dist') +install_path = Path('install') + +wheel_file = next(dist_path.glob('*.whl')) +sdk_name = f'{wheel_file.stem}-sdk' +tarball_name = f'{sdk_name}.tar.xz' + +install_path.rename(sdk_name) +try: + subprocess.check_call(['tar', 'czf', tarball_name, sdk_name]) +finally: + Path(sdk_name).rename(install_path) diff --git a/.gitlab/os-linux.yml b/.gitlab/os-linux.yml index a0fd02ce42bd..1731cd29750e 100644 --- a/.gitlab/os-linux.yml +++ b/.gitlab/os-linux.yml @@ -395,13 +395,7 @@ - auditwheel repair dist/*.whl >> $GIT_CLONE_PATH/wheel_output.log - mv -v dist/ dist-orig/ - mv -v wheelhouse/ dist/ - - pushd . - - cd dist - - 'sdk_name="$( ls *.whl | sed -e "s/\.whl/-sdk/" )"' - - popd - - mv install $sdk_name - - tar czf $sdk_name.tar.xz $sdk_name - - mv $sdk_name install + - "$PYTHON_PREFIX/bin/python $GIT_CLONE_PATH/.gitlab/ci/wheel_sdk.py" interruptible: true diff --git a/.gitlab/os-macos.yml b/.gitlab/os-macos.yml index 871ab114ccd9..2ecae24a73d5 100644 --- a/.gitlab/os-macos.yml +++ b/.gitlab/os-macos.yml @@ -219,13 +219,7 @@ - "$PYTHON_PREFIX/bin/python$PYTHON_VERSION_SUFFIX -m venv venv" - venv/bin/pip install wheel - venv/bin/python3 setup.py bdist_wheel - - pushd . - - cd dist - - 'sdk_name="$( ls *.whl | sed -e "s/\.whl/-sdk/" )"' - - popd - - mv install $sdk_name - - tar czf $sdk_name.tar.xz $sdk_name - - mv $sdk_name install + - venv/bin/python3 $GIT_CLONE_PATH/.gitlab/ci/wheel_sdk.py # XXX: `delocate` can't handle `@loader_path` or do recursive # dependency scanning. Ignore it and just do it manually because # apparently VTK is the most complicated wheel in the world. diff --git a/.gitlab/os-windows.yml b/.gitlab/os-windows.yml index 4d3da6500e3d..8f66f80a51d9 100644 --- a/.gitlab/os-windows.yml +++ b/.gitlab/os-windows.yml @@ -256,13 +256,7 @@ - . .\venv\Scripts\Activate.ps1 - pip install wheel - python setup.py bdist_wheel - - pushd . - - cd dist - - $sdk_name = (ls *.whl).Name.replace('.whl', '-sdk') - - popd - - mv install $sdk_name - - tar czf "$sdk_name.tar.xz" "$sdk_name" - - mv $sdk_name install + - python "$env:GIT_CLONE_PATH\.gitlab\ci\wheel_sdk.py" # XXX(delvewheel): It is finding 32bit Visual Studio libraries and # bailing instead of continuing to search for 64bit versions of the # DLL. -- GitLab From f0da391f5218642f0413b7381bbc3b5f86943522 Mon Sep 17 00:00:00 2001 From: Patrick Avery Date: Wed, 4 May 2022 20:50:14 -0500 Subject: [PATCH 0114/1015] Add release notes for wheel sdks Signed-off-by: Patrick Avery --- Documentation/release/dev/python-wheel-sdks.md | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 Documentation/release/dev/python-wheel-sdks.md diff --git a/Documentation/release/dev/python-wheel-sdks.md b/Documentation/release/dev/python-wheel-sdks.md new file mode 100644 index 000000000000..35a80d62ed82 --- /dev/null +++ b/Documentation/release/dev/python-wheel-sdks.md @@ -0,0 +1,4 @@ +## Python Wheel SDKs + +SDKs (install trees) for each wheel are now uploaded as artifacts, and +weekly SDKs for each wheel are uploaded to vtk.org. -- GitLab From 97c97d44578bc8a10f50f9b04adb2a40f8d51923 Mon Sep 17 00:00:00 2001 From: Chris Harris Date: Fri, 6 May 2022 11:12:54 -0400 Subject: [PATCH 0115/1015] Update wheel SDK tarball name Add 'wheel-sdk' to front rather than the end. --- .gitlab-ci.yml | 2 +- .gitlab/artifacts.yml | 2 +- .gitlab/ci/wheel_sdk.py | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index e6fccf959d0b..eaa606b7168c 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -504,7 +504,7 @@ wheel-sdk:upload: - wheel-windows-python310-x86_64:build - wheel-windows-python310-x86_64:test variables: - RSYNC_SOURCE: build/*-sdk.tar.xz + RSYNC_SOURCE: build/vtk-wheel-sdk-*.tar.xz RSYNC_DESTINATION: wheel-sdks/ ## Static analysis builds diff --git a/.gitlab/artifacts.yml b/.gitlab/artifacts.yml index 4ca0beade127..23c946a2ae29 100644 --- a/.gitlab/artifacts.yml +++ b/.gitlab/artifacts.yml @@ -108,7 +108,7 @@ - wheel_output.log - build/dist/*.whl - - build/*-sdk.tar.xz + - build/vtk-wheel-sdk-*.tar.xz .cmake_release_artifacts: artifacts: diff --git a/.gitlab/ci/wheel_sdk.py b/.gitlab/ci/wheel_sdk.py index 34ddea63867b..0b95d3f0b3cb 100644 --- a/.gitlab/ci/wheel_sdk.py +++ b/.gitlab/ci/wheel_sdk.py @@ -5,7 +5,7 @@ dist_path = Path('dist') install_path = Path('install') wheel_file = next(dist_path.glob('*.whl')) -sdk_name = f'{wheel_file.stem}-sdk' +sdk_name = wheel_file.stem.replace('vtk-', 'vtk-wheel-sdk-') tarball_name = f'{sdk_name}.tar.xz' install_path.rename(sdk_name) -- GitLab From 06fcd41ac4922ee5802fc97033138dfe87d37b5d Mon Sep 17 00:00:00 2001 From: Chris Harris Date: Fri, 6 May 2022 11:53:10 -0400 Subject: [PATCH 0116/1015] Set VTK_INSTALL_SDK for wheel builds --- .gitlab/ci/configure_wheel.cmake | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.gitlab/ci/configure_wheel.cmake b/.gitlab/ci/configure_wheel.cmake index 4c62249b7e38..77b171ff6f5e 100644 --- a/.gitlab/ci/configure_wheel.cmake +++ b/.gitlab/ci/configure_wheel.cmake @@ -21,6 +21,8 @@ if ("$ENV{CMAKE_CONFIGURATION}" MATCHES "macos") endif () set(VTK_WHEEL_BUILD ON CACHE BOOL "") +set(VTK_INSTALL_SDK ON CACHE BOOL "") + set(CMAKE_PREFIX_PATH "$ENV{PYTHON_PREFIX}" CACHE STRING "") set(Python3_EXECUTABLE "$ENV{PYTHON_PREFIX}/${python_subdir}python$ENV{PYTHON_VERSION_SUFFIX}" CACHE FILEPATH "") # We always want the Python specified here, not the system one. -- GitLab From f269fdb60fafa8eee555d8ed6662e04e69775bda Mon Sep 17 00:00:00 2001 From: Chris Harris Date: Fri, 6 May 2022 11:30:16 -0400 Subject: [PATCH 0117/1015] Rename wheel_sdk => create_wheel_sdk_archive.py --- .gitlab/ci/{wheel_sdk.py => create_wheel_sdk_archive.py} | 0 .gitlab/os-linux.yml | 2 +- .gitlab/os-macos.yml | 2 +- .gitlab/os-windows.yml | 2 +- 4 files changed, 3 insertions(+), 3 deletions(-) rename .gitlab/ci/{wheel_sdk.py => create_wheel_sdk_archive.py} (100%) diff --git a/.gitlab/ci/wheel_sdk.py b/.gitlab/ci/create_wheel_sdk_archive.py similarity index 100% rename from .gitlab/ci/wheel_sdk.py rename to .gitlab/ci/create_wheel_sdk_archive.py diff --git a/.gitlab/os-linux.yml b/.gitlab/os-linux.yml index 1731cd29750e..ec054c79692c 100644 --- a/.gitlab/os-linux.yml +++ b/.gitlab/os-linux.yml @@ -395,7 +395,7 @@ - auditwheel repair dist/*.whl >> $GIT_CLONE_PATH/wheel_output.log - mv -v dist/ dist-orig/ - mv -v wheelhouse/ dist/ - - "$PYTHON_PREFIX/bin/python $GIT_CLONE_PATH/.gitlab/ci/wheel_sdk.py" + - "$PYTHON_PREFIX/bin/python $GIT_CLONE_PATH/.gitlab/ci/create_wheel_sdk_archive.py" interruptible: true diff --git a/.gitlab/os-macos.yml b/.gitlab/os-macos.yml index 2ecae24a73d5..7e7caf9f497a 100644 --- a/.gitlab/os-macos.yml +++ b/.gitlab/os-macos.yml @@ -219,7 +219,7 @@ - "$PYTHON_PREFIX/bin/python$PYTHON_VERSION_SUFFIX -m venv venv" - venv/bin/pip install wheel - venv/bin/python3 setup.py bdist_wheel - - venv/bin/python3 $GIT_CLONE_PATH/.gitlab/ci/wheel_sdk.py + - venv/bin/python3 $GIT_CLONE_PATH/.gitlab/ci/create_wheel_sdk_archive.py # XXX: `delocate` can't handle `@loader_path` or do recursive # dependency scanning. Ignore it and just do it manually because # apparently VTK is the most complicated wheel in the world. diff --git a/.gitlab/os-windows.yml b/.gitlab/os-windows.yml index 8f66f80a51d9..9f1a3b2f846e 100644 --- a/.gitlab/os-windows.yml +++ b/.gitlab/os-windows.yml @@ -256,7 +256,7 @@ - . .\venv\Scripts\Activate.ps1 - pip install wheel - python setup.py bdist_wheel - - python "$env:GIT_CLONE_PATH\.gitlab\ci\wheel_sdk.py" + - python "$env:GIT_CLONE_PATH\.gitlab\ci\create_wheel_sdk_archive.py" # XXX(delvewheel): It is finding 32bit Visual Studio libraries and # bailing instead of continuing to search for 64bit versions of the # DLL. -- GitLab From 3cc15d0f2f53e346b62a6b0204dfe0a74fd0bdbf Mon Sep 17 00:00:00 2001 From: Chris Harris Date: Fri, 6 May 2022 11:54:56 -0400 Subject: [PATCH 0118/1015] Fix new release notes --- .gitlab/issue_templates/new-release.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab/issue_templates/new-release.md b/.gitlab/issue_templates/new-release.md index a59fefd2ef79..7cac98429044 100644 --- a/.gitlab/issue_templates/new-release.md +++ b/.gitlab/issue_templates/new-release.md @@ -67,7 +67,7 @@ git commit -m 'Update version number to @VERSION@@RC@' CMake/vtkVersion.cmake - [ ] Source (from the `build:source` CI job in the tag pipeline) - [ ] Documentation (from the `release-prep:documentation` CI job in the tag pipeline) - [ ] Wheels (from the `build:wheel-*` jobs). - - [ ] Wheel SDKs (from the `build:wheel-*` jobs (`*.-sdk.tar.xz`)). + - [ ] Wheel SDKs (from the `build:wheel-*` jobs (`vtk-wheel-sdk-*.tar.xz`)). - Upload assets to `vtk.org` - [ ] `rsync -rptv $tarballs $wheels $wheel_sdks user@host:vtk_release/@MAJOR@.@MINOR@/` - [ ] `rsync -rptv $wheel_sdks user@host:wheel-sdks/` -- GitLab From 6b26668d2f8f678f32a3adeb3fede9b1b096c779 Mon Sep 17 00:00:00 2001 From: Patrick Avery Date: Sat, 7 May 2022 06:07:34 -0500 Subject: [PATCH 0119/1015] Use xz format Although the extension was "xz", it was actually performing "gz" compression. Signed-off-by: Patrick Avery --- .gitlab/ci/create_wheel_sdk_archive.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab/ci/create_wheel_sdk_archive.py b/.gitlab/ci/create_wheel_sdk_archive.py index 0b95d3f0b3cb..49c535b3e47f 100644 --- a/.gitlab/ci/create_wheel_sdk_archive.py +++ b/.gitlab/ci/create_wheel_sdk_archive.py @@ -10,6 +10,6 @@ tarball_name = f'{sdk_name}.tar.xz' install_path.rename(sdk_name) try: - subprocess.check_call(['tar', 'czf', tarball_name, sdk_name]) + subprocess.check_call(['tar', 'cJf', tarball_name, sdk_name]) finally: Path(sdk_name).rename(install_path) -- GitLab From d6c30cd36f2bc6230731c425121f5e2225d260b8 Mon Sep 17 00:00:00 2001 From: Patrick Avery Date: Sat, 7 May 2022 06:40:06 -0500 Subject: [PATCH 0120/1015] Use the `tar` that comes with cmake Signed-off-by: Patrick Avery --- .gitlab/ci/create_wheel_sdk_archive.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.gitlab/ci/create_wheel_sdk_archive.py b/.gitlab/ci/create_wheel_sdk_archive.py index 49c535b3e47f..02c8351c60a0 100644 --- a/.gitlab/ci/create_wheel_sdk_archive.py +++ b/.gitlab/ci/create_wheel_sdk_archive.py @@ -10,6 +10,7 @@ tarball_name = f'{sdk_name}.tar.xz' install_path.rename(sdk_name) try: - subprocess.check_call(['tar', 'cJf', tarball_name, sdk_name]) + cmd = ['cmake', '-E', 'tar', 'cJf', tarball_name, sdk_name] + subprocess.check_call(cmd) finally: Path(sdk_name).rename(install_path) -- GitLab From 44aab0377affc583a50314d95df9a3a06c22d9b6 Mon Sep 17 00:00:00 2001 From: Will Schroeder Date: Sat, 7 May 2022 10:08:54 -0400 Subject: [PATCH 0121/1015] Ensure that bounding boxes have non-zero sides vtkPolygon::PointInPolygon was failing in rare cases when the polygon lay precisely on a x-y-z plane. This was due to tolerancing issues with a polygon bounding box check. Inflating the bounding box slightly resolved this issue. --- Common/DataModel/vtkBoundingBox.cxx | 16 ++++++++++++++++ Common/DataModel/vtkBoundingBox.h | 12 ++++++++---- Common/DataModel/vtkPolygon.cxx | 16 ++++++++++++---- 3 files changed, 36 insertions(+), 8 deletions(-) diff --git a/Common/DataModel/vtkBoundingBox.cxx b/Common/DataModel/vtkBoundingBox.cxx index 1d4023da0438..e089cff4e604 100644 --- a/Common/DataModel/vtkBoundingBox.cxx +++ b/Common/DataModel/vtkBoundingBox.cxx @@ -236,6 +236,22 @@ void vtkBoundingBox::Inflate() } } +//------------------------------------------------------------------------------ +// Make sure the length of all sides of the bounding box are non-zero, and at +// least 2*delta thick. +void vtkBoundingBox::InflateSlice(double delta) +{ + for (auto i = 0; i < 3; ++i) + { + double w = this->MaxPnt[i] - this->MinPnt[i]; + if (w < (2.0 * delta)) + { + this->MinPnt[i] -= delta; + this->MaxPnt[i] += delta; + } + } +} + //------------------------------------------------------------------------------ int vtkBoundingBox::IntersectBox(const vtkBoundingBox& bbox) { diff --git a/Common/DataModel/vtkBoundingBox.h b/Common/DataModel/vtkBoundingBox.h index 6886ab3c4982..136eff9cffb6 100644 --- a/Common/DataModel/vtkBoundingBox.h +++ b/Common/DataModel/vtkBoundingBox.h @@ -281,14 +281,18 @@ public: /** * Expand the bounding box. Inflate(delta) expands by delta on each side, * the box will grow by 2*delta in x, y, and z. Inflate(dx,dy,dz) expands - * by the given amounts in each of the x, y, z directions. Finally, - * Inflate() expands the bounds so that it has non-zero volume. Edges that - * are inflated are adjusted 1% of the longest edge. Or if an edge is - * zero length, the bounding box is inflated by 1 unit in that direction. + * by the given amounts in each of the x, y, z directions. Inflate() + * expands the bounds so that it has non-zero volume. Sides that are + * inflated are adjusted by 1% of the longest edge. Or if an edge is zero + * length, the bounding box is inflated by 1 unit in that direction. + * Finally, InflateSlice(delta) will expand any side of the bounding box by + * +/- delta if that side has length <2*delta (i.e., it is a slice as + * measured by the user-specified delta)). */ void Inflate(double delta); void Inflate(double deltaX, double deltaY, double deltaZ); void Inflate(); + void InflateSlice(double delta); ///@} ///@{ diff --git a/Common/DataModel/vtkPolygon.cxx b/Common/DataModel/vtkPolygon.cxx index 95c10f94dbb6..2ac8958825e5 100644 --- a/Common/DataModel/vtkPolygon.cxx +++ b/Common/DataModel/vtkPolygon.cxx @@ -14,6 +14,7 @@ =========================================================================*/ #include "vtkPolygon.h" +#include "vtkBoundingBox.h" #include "vtkBox.h" #include "vtkCellArray.h" #include "vtkDataSet.h" @@ -37,6 +38,8 @@ vtkStandardNewMacro(vtkPolygon); +#define VTK_POLYGON_TOL 1.e-08 // Absolute tolerance for testing near polygon boundary + //------------------------------------------------------------------------------ // Instantiate polygon. vtkPolygon::vtkPolygon() @@ -352,7 +355,7 @@ int vtkPolygon::EvaluatePosition(const double x[3], double closestPoint[3], int& { int i; double p0[3], p10[3], l10, p20[3], l20, n[3], cp[3]; - double ray[3]; + double ray[3], bounds[6]; subId = 0; this->ParameterizePolygon(p0, p10, l10, p20, l20, n); @@ -367,9 +370,16 @@ int vtkPolygon::EvaluatePosition(const double x[3], double closestPoint[3], int& pcoords[1] = vtkMath::Dot(ray, p20) / (l20 * l20); pcoords[2] = 0.0; + // Make sure that the bounding box has non-zero volume, so that all + // bounding box sides have non-zero thickness. This prevents tolerancing + // issues when the polygon lies exactly on a coordinate plane. + vtkBoundingBox bbox(this->GetBounds()); + bbox.InflateSlice(VTK_POLYGON_TOL); + bbox.GetBounds(bounds); + if (pcoords[0] >= 0.0 && pcoords[0] <= 1.0 && pcoords[1] >= 0.0 && pcoords[1] <= 1.0 && (vtkPolygon::PointInPolygon(cp, this->Points->GetNumberOfPoints(), - static_cast(this->Points->GetData())->GetPointer(0), this->GetBounds(), + static_cast(this->Points->GetData())->GetPointer(0), bounds, n) == VTK_POLYGON_INSIDE)) { if (closestPoint) @@ -671,8 +681,6 @@ inline double PointLocation(int axis0, int axis1, double* p0, double* p1, double } } -#define VTK_POLYGON_TOL 1.e-08 // Tolerance for testing on polygon boundary - //------------------------------------------------------------------------------ // Determine whether a point is inside a polygon. The function uses a winding // number calculation generalized to the 3D plane one which the polygon -- GitLab From 16d1af3f850ca7befe0554fa2bfe1be7548925d0 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sun, 8 May 2022 00:01:20 -0400 Subject: [PATCH 0122/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index d1619da694c6..600090d5cd4d 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220507) +set(VTK_BUILD_VERSION 20220508) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 855f780d187880eacd165334fa0569007c2dee87 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 09:49:44 +0200 Subject: [PATCH 0123/1015] Fix a filename warning with macros --- Common/Core/vtkSetGet.h | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/Common/Core/vtkSetGet.h b/Common/Core/vtkSetGet.h index 8b149e9fd242..deeb104cb5df 100644 --- a/Common/Core/vtkSetGet.h +++ b/Common/Core/vtkSetGet.h @@ -777,8 +777,8 @@ extern VTKCOMMONCORE_EXPORT void vtkOutputWindowDisplayDebugText( vtkOStreamWrapper::UseEndl(endl); \ vtkOStrStreamWrapper vtkmsg; \ vtkmsg << "" x; \ - std::string filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ - vtkOutputWindowDisplayGenericWarningText(filename.c_str(), __LINE__, vtkmsg.str()); \ + std::string _filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ + vtkOutputWindowDisplayGenericWarningText(_filename.c_str(), __LINE__, vtkmsg.str()); \ vtkmsg.rdbuf()->freeze(0); \ } \ } while (false) @@ -826,8 +826,8 @@ extern VTKCOMMONCORE_EXPORT void vtkOutputWindowDisplayDebugText( vtkmsg << "(nullptr): "; \ } \ vtkmsg << "" x; \ - std::string filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ - vtkOutputWindowDisplayErrorText(filename.c_str(), __LINE__, vtkmsg.str(), _object); \ + std::string _filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ + vtkOutputWindowDisplayErrorText(_filename.c_str(), __LINE__, vtkmsg.str(), _object); \ vtkmsg.rdbuf()->freeze(0); \ vtkObject::BreakOnError(); \ } \ @@ -858,8 +858,8 @@ extern VTKCOMMONCORE_EXPORT void vtkOutputWindowDisplayDebugText( vtkmsg << "(nullptr): "; \ } \ vtkmsg << "" x; \ - std::string filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ - vtkOutputWindowDisplayWarningText(filename.c_str(), __LINE__, vtkmsg.str(), _object); \ + std::string _filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ + vtkOutputWindowDisplayWarningText(_filename.c_str(), __LINE__, vtkmsg.str(), _object); \ vtkmsg.rdbuf()->freeze(0); \ } \ } while (false) @@ -895,8 +895,8 @@ extern VTKCOMMONCORE_EXPORT void vtkOutputWindowDisplayDebugText( vtkmsg << "(nullptr): "; \ } \ vtkmsg << "" x; \ - std::string filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ - vtkOutputWindowDisplayDebugText(filename.c_str(), __LINE__, vtkmsg.str(), _object); \ + std::string _filename = vtksys::SystemTools::GetFilenameName(__FILE__); \ + vtkOutputWindowDisplayDebugText(_filename.c_str(), __LINE__, vtkmsg.str(), _object); \ vtkmsg.rdbuf()->freeze(0); \ } \ } while (false) -- GitLab From 150360ddfbff26daa91395b5c8c81f9abeb28b3a Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Sat, 7 May 2022 11:48:27 -0600 Subject: [PATCH 0124/1015] Fix pyi method duplication check The check for duplicated method signatures in the pyi files was done incorrectly, because some processing was done between the check and appending to the list. Also, the 'static' check on the C++ method was unnecessary, and normalization of whitespace was done incorrectly. --- Wrapping/Python/vtkmodules/generate_pyi.py | 32 ++++++++++++---------- 1 file changed, 18 insertions(+), 14 deletions(-) diff --git a/Wrapping/Python/vtkmodules/generate_pyi.py b/Wrapping/Python/vtkmodules/generate_pyi.py index 219c304588f6..b563d2a5e589 100755 --- a/Wrapping/Python/vtkmodules/generate_pyi.py +++ b/Wrapping/Python/vtkmodules/generate_pyi.py @@ -161,8 +161,8 @@ def topologically_sorted_items(d): # regular expressions for parsing string = re.compile(r"""("([^\\"]|\\.)*"|'([^\\']|\\.)*')""") -identifier = re.compile(r"""[ \t]*([A-Za-z_]([A-Za-z0-9_]|[.][A-Za-z_])*)""") -indent = re.compile(r"[ \t]+\S") +identifier = re.compile(r"""([A-Za-z_]([A-Za-z0-9_]|[.][A-Za-z_])*)""") +indent = re.compile(r"[ \t]+(?=\S)") has_self = re.compile(r"[(]self[,)]") # important characters for rapidly parsing code @@ -181,17 +181,18 @@ def parse_error(message, text, begin, pos): def push_signature(o, l, signature): """Process a method signature and add it to the list. """ + # eliminate newlines and indents signature = re.sub(r"\s+", " ", signature) + # no space after opening delimiter or ':' or '=' + signature = re.sub(r"([({\[:=]) ", "\\1", signature) if signature.startswith('C++:'): - # if C++ method is static, mark Python signature static - if isvtkmethod(o) and signature.find(" static ") != -1 and len(l) > 0: - if not l[-1].startswith("@staticmethod"): - l[-1] = "@staticmethod\n" + l[-1] + # the C++ method signatures are unused + pass elif signature.startswith(o.__name__ + "("): if isvtkmethod(o) and not has_self.search(signature): - if not signature.startswith("@staticmethod"): - signature = "@staticmethod\n" + signature - l.append(signature) + signature = "@staticmethod\n" + signature + if signature not in l: + l.append(signature) def get_signatures(o): """Return a list of method signatures found in the docstring. @@ -209,7 +210,7 @@ def get_signatures(o): # loop through docstring using longest strides possible # (this will go line-by-line or until first ( ) { } [ ] " ' : >) while pos < len(doc): - # look for the next "character of insterest" in docstring + # look for the next "character of interest" in docstring match = keychar.search(doc, pos) # did we find a match before the end of docstring? if match: @@ -235,7 +236,10 @@ def get_signatures(o): break elif c == ':' or (c == '>' and doc[pos-1] == '-'): # what follows is a type - m = identifier.match(doc, pos+1) + m = indent.match(doc, end) + if m: + pos,end = m.span() + m = identifier.match(doc, end) if m: pos,end = m.span(1) name = m.group(1) @@ -247,7 +251,7 @@ def get_signatures(o): # a newline not followed by an indent marks end of signature, # except for within brackets signature = doc[begin:pos].strip() - if signature and signature not in signatures: + if signature: push_signature(o, signatures, signature) begin = end else: @@ -258,7 +262,7 @@ def get_signatures(o): end = len(doc) if not delim_stack: signature = doc[begin:pos].strip() - if signature and signature not in signatures: + if signature: push_signature(o, signatures, signature) else: parse_error("Unmatched bracket", doc, begin, pos) @@ -299,7 +303,7 @@ def make_def(s, indent): """ pos = 0 out = "" - while pos < len(s) and s[pos] == '@': + while s.startswith('@', pos): end = s.find('\n', pos) + 1 if end == 0: end = len(s) -- GitLab From 5abf7db29d3ed25d5547565b890926873177bfb1 Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Sun, 8 May 2022 08:31:26 -0600 Subject: [PATCH 0125/1015] Refactor .pyi generator to simplify code --- Wrapping/Python/vtkmodules/generate_pyi.py | 78 ++++++++++++++-------- 1 file changed, 50 insertions(+), 28 deletions(-) diff --git a/Wrapping/Python/vtkmodules/generate_pyi.py b/Wrapping/Python/vtkmodules/generate_pyi.py index b563d2a5e589..70fef9117cee 100755 --- a/Wrapping/Python/vtkmodules/generate_pyi.py +++ b/Wrapping/Python/vtkmodules/generate_pyi.py @@ -178,6 +178,38 @@ def parse_error(message, text, begin, pos): sys.stderr.write(text[begin:end] + "\n"); sys.stderr.write('-' * (pos - begin) + "^\n") +def fix_annotations(signature): + """Fix the annotations in a method definition. + The signature must be a single-line function def, no decorators. + """ + # get the FunctionDef object from the parse tree + definition = ast.parse(signature).body[0] + annotations = [arg.annotation for arg in definition.args.args] + annotations.append(definition.returns) + + # create a list of changes to apply to the annotations + changes = [] + for a in annotations: + if isinstance(a, ast.Name): + name = a.id + if name not in types: + # quote the type + name = '\'' + name + '\'' + changes.append((a.col_offset, a.end_col_offset, name)) + + # apply changes to generate a new signature + if changes: + newsig = "" + lastpos = 0 + for begin,end,text in changes: + newsig += signature[lastpos:begin] + newsig += text + lastpos = end + newsig += signature[lastpos:] + signature = newsig + + return signature + def push_signature(o, l, signature): """Process a method signature and add it to the list. """ @@ -185,12 +217,13 @@ def push_signature(o, l, signature): signature = re.sub(r"\s+", " ", signature) # no space after opening delimiter or ':' or '=' signature = re.sub(r"([({\[:=]) ", "\\1", signature) + if signature.startswith('C++:'): # the C++ method signatures are unused pass elif signature.startswith(o.__name__ + "("): - if isvtkmethod(o) and not has_self.search(signature): - signature = "@staticmethod\n" + signature + # make it into a python method definition + signature = "def " + signature + ': ...' if signature not in l: l.append(signature) @@ -284,39 +317,26 @@ def get_constructors(c): return constructors signatures = get_signatures(c) for signature in signatures: - if signature.startswith(name + "("): + if signature.startswith("def " + name + "("): signature = re.sub("-> \'?" + name + "\'?", "-> None", signature) - if signature.startswith(name + "()"): + if signature.startswith("def " + name + "()"): constructors.append(re.sub(name + r"\(", "__init__(self", signature, 1)) else: constructors.append(re.sub(name + r"\(", "__init__(self, ", signature, 1)) return constructors +def handle_static(o, signature): + """If method has no "self", add @static decorator.""" + if isvtkmethod(o) and not has_self.search(signature): + return "@staticmethod\n" + signature + else: + return signature + def add_indent(s, indent): """Add the given indent before every line in the string. """ return indent + re.sub(r"\n(?=([^\n]))", "\n" + indent, s) -def make_def(s, indent): - """Generate a method definition stub from the signature and an indent. - The indent is a string (tabs or spaces). - """ - pos = 0 - out = "" - while s.startswith('@', pos): - end = s.find('\n', pos) + 1 - if end == 0: - end = len(s) - out += indent - out += s[pos:end] - pos = end - if pos < len(s): - out += indent - out += "def " - out += s[pos:] - out += ": ..." - return out - def namespace_pyi(c, mod): """Fake a namespace by creating a dummy class. """ @@ -394,10 +414,10 @@ def class_pyi(c): else: count += 1 if len(constructors) == 1: - out += make_def(constructors[0], " ") + "\n" + out += add_indent(constructors[0], " ") + "\n" else: for overload in constructors: - out += make_def("@overload\n" + overload, " ") + "\n" + out += add_indent("@overload\n" + overload, " ") + "\n" # do the methods items = others @@ -409,10 +429,12 @@ def class_pyi(c): continue count += 1 if len(signatures) == 1: - out += make_def(signatures[0], " ") + "\n" + signature = handle_static(o, signatures[0]) + out += add_indent(signature, " ") + "\n" continue for overload in signatures: - out += make_def("@overload\n" + overload, " ") + "\n" + signature = handle_static(o, overload) + out += add_indent("@overload\n" + signature, " ") + "\n" else: others.append((m, o)) -- GitLab From b04376986571a98f6943a604bc01bfc6038218bf Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Sun, 8 May 2022 10:32:54 -0600 Subject: [PATCH 0126/1015] In generate_pyi, use ast to modify annotations Using Python's own parser provides more robustness/flexibility. --- Wrapping/Python/vtkmodules/generate_pyi.py | 43 +++++++++++----------- 1 file changed, 21 insertions(+), 22 deletions(-) diff --git a/Wrapping/Python/vtkmodules/generate_pyi.py b/Wrapping/Python/vtkmodules/generate_pyi.py index 70fef9117cee..1afd2e40eac0 100755 --- a/Wrapping/Python/vtkmodules/generate_pyi.py +++ b/Wrapping/Python/vtkmodules/generate_pyi.py @@ -166,7 +166,7 @@ indent = re.compile(r"[ \t]+(?=\S)") has_self = re.compile(r"[(]self[,)]") # important characters for rapidly parsing code -keychar = re.compile(r"[\'\"{}\[\]()>:\n]") +keychar = re.compile(r"[\'\"{}\[\]()\n]") def parse_error(message, text, begin, pos): """Print a parse error, syntax or otherwise. @@ -178,6 +178,17 @@ def parse_error(message, text, begin, pos): sys.stderr.write(text[begin:end] + "\n"); sys.stderr.write('-' * (pos - begin) + "^\n") +def annotation_text(a, text, is_return): + """Return the new text to be used for an annotation. + """ + if isinstance(a, ast.Name): + name = a.id + if name not in types: + # quote the type, in case it isn't yet defined + text = '\'' + name + '\'' + + return text + def fix_annotations(signature): """Fix the annotations in a method definition. The signature must be a single-line function def, no decorators. @@ -185,17 +196,17 @@ def fix_annotations(signature): # get the FunctionDef object from the parse tree definition = ast.parse(signature).body[0] annotations = [arg.annotation for arg in definition.args.args] + return_i = len(annotations) # index of annotation for return annotations.append(definition.returns) # create a list of changes to apply to the annotations changes = [] - for a in annotations: - if isinstance(a, ast.Name): - name = a.id - if name not in types: - # quote the type - name = '\'' + name + '\'' - changes.append((a.col_offset, a.end_col_offset, name)) + for i,a in enumerate(annotations): + if a is not None: + old_text = signature[a.col_offset:a.end_col_offset] + text = annotation_text(a, old_text, (i == return_i)) + if text != old_text: + changes.append((a.col_offset, a.end_col_offset, text)) # apply changes to generate a new signature if changes: @@ -224,6 +235,7 @@ def push_signature(o, l, signature): elif signature.startswith(o.__name__ + "("): # make it into a python method definition signature = "def " + signature + ': ...' + signature = fix_annotations(signature) if signature not in l: l.append(signature) @@ -241,7 +253,7 @@ def get_signatures(o): delim_stack = [] # keep track of bracket depth # loop through docstring using longest strides possible - # (this will go line-by-line or until first ( ) { } [ ] " ' : >) + # (this will go line-by-line or until first ( ) { } [ ] " ') while pos < len(doc): # look for the next "character of interest" in docstring match = keychar.search(doc, pos) @@ -267,19 +279,6 @@ def get_signatures(o): if not delim_stack or c != delim_stack.pop(): parse_error("Unmatched bracket", doc, begin, pos) break - elif c == ':' or (c == '>' and doc[pos-1] == '-'): - # what follows is a type - m = indent.match(doc, end) - if m: - pos,end = m.span() - m = identifier.match(doc, end) - if m: - pos,end = m.span(1) - name = m.group(1) - if name not in types: - # quote the type - doc = doc[0:pos] + ('\'' + name + '\'') + doc[end:] - end += 2 elif c == '\n' and not (delim_stack or indent.match(doc, end)): # a newline not followed by an indent marks end of signature, # except for within brackets -- GitLab From 3735164424c24da47666203f6cec0a87186a2412 Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Sun, 8 May 2022 13:27:46 -0600 Subject: [PATCH 0127/1015] Use Tuple, List, Sequence in pyi files The parameter annotations previously used bare lists and tuples, which are not PEP-484 friendly and therefore not recognized by all IDE type-hinters. --- Wrapping/Python/vtkmodules/generate_pyi.py | 23 +++++++++++++++++++++- 1 file changed, 22 insertions(+), 1 deletion(-) diff --git a/Wrapping/Python/vtkmodules/generate_pyi.py b/Wrapping/Python/vtkmodules/generate_pyi.py index 1afd2e40eac0..ca5c4dbca21c 100755 --- a/Wrapping/Python/vtkmodules/generate_pyi.py +++ b/Wrapping/Python/vtkmodules/generate_pyi.py @@ -186,6 +186,25 @@ def annotation_text(a, text, is_return): if name not in types: # quote the type, in case it isn't yet defined text = '\'' + name + '\'' + elif isinstance(a, (ast.Tuple, ast.List)): + size = len(a.elts) + e = a.elts[0] + offset = a.col_offset + old_name = text[e.col_offset - offset:e.end_col_offset - offset] + name = annotation_text(e, old_name, is_return) + + if is_return: + # use concrete types for return values + if isinstance(a, ast.Tuple): + text = 'Tuple[' + ', '.join([name]*size) + ']' + else: + text = 'List[' + name + ']' + else: + # use generic sequence types for args + if isinstance(a, ast.Tuple): + text = 'Sequence[' + name + ']' + else: + text = 'MutableSequence[' + name + ']' return text @@ -446,7 +465,9 @@ def module_pyi(mod, output): """Generate the contents of a .pyi file for a VTK module. """ # needed stuff from typing module - output.write("from typing import overload, Any, Callable, TypeVar, Union\n\n") + output.write("from typing import overload, Any, Callable, TypeVar, Union\n") + output.write("from typing import Tuple, List, Sequence, MutableSequence\n") + output.write("\n") output.write("Callback = Union[Callable[..., None], None]\n") output.write("Buffer = TypeVar('Buffer')\n") output.write("Pointer = TypeVar('Pointer')\n") -- GitLab From e643e48cc665c2ef1a11b14ffb11b870a28b61d8 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Mon, 9 May 2022 00:01:52 -0400 Subject: [PATCH 0128/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 600090d5cd4d..b73acc7aae40 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220508) +set(VTK_BUILD_VERSION 20220509) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 6e803e8d59d0f95116c092fc6c5f9626e35ae733 Mon Sep 17 00:00:00 2001 From: Sujin Philip Date: Fri, 1 Apr 2022 13:00:42 -0400 Subject: [PATCH 0129/1015] Update VTK-m --- ...e_fedora34_cuda_mpi_offscreen_osmesa.cmake | 4 +-- .../DataModel/Testing/Cxx/TestVTKMDataSet.cxx | 4 ++- Accelerators/Vtkm/DataModel/vtkmDataSet.cxx | 2 +- .../DataModel/vtkmlib/ArrayConverters.cxx | 4 +-- .../DataModel/vtkmlib/CellSetConverters.cxx | 12 ++++---- .../DataModel/vtkmlib/CellSetConverters.h | 8 +++--- .../DataModel/vtkmlib/DataSetConverters.cxx | 3 +- .../DataModel/vtkmlib/ImageDataConverter.cxx | 9 ++++-- .../DataModel/vtkmlib/PolyDataConverter.cxx | 12 ++++---- .../vtkmlib/UnstructuredGridConverter.cxx | 7 ++--- .../Vtkm/Filters/vtkmAverageToCells.cxx | 6 ++-- .../Vtkm/Filters/vtkmAverageToPoints.cxx | 6 ++-- Accelerators/Vtkm/Filters/vtkmCleanGrid.cxx | 4 +-- .../vtkmClipInstantiationsWithField.cxx | 8 +++--- ...ClipInstantiationsWithImplicitFunction.cxx | 4 +-- Accelerators/Vtkm/Filters/vtkmContour.cxx | 7 +++-- .../Filters/vtkmCoordinateSystemTransform.cxx | 7 +++-- .../Vtkm/Filters/vtkmExternalFaces.cxx | 4 +-- Accelerators/Vtkm/Filters/vtkmExtractVOI.cxx | 4 +-- Accelerators/Vtkm/Filters/vtkmGradient.cxx | 28 +++++++++---------- Accelerators/Vtkm/Filters/vtkmHistogram.cxx | 4 +-- .../Vtkm/Filters/vtkmImageConnectivity.cxx | 8 +++--- .../Vtkm/Filters/vtkmLevelOfDetail.cxx | 4 +-- Accelerators/Vtkm/Filters/vtkmNDHistogram.cxx | 4 +-- .../Vtkm/Filters/vtkmPointElevation.cxx | 4 +-- .../Vtkm/Filters/vtkmPointTransform.cxx | 6 ++-- .../Vtkm/Filters/vtkmPolyDataNormals.cxx | 4 +-- Accelerators/Vtkm/Filters/vtkmProbe.cxx | 4 +-- Accelerators/Vtkm/Filters/vtkmThreshold.cxx | 4 +-- .../Filters/vtkmTriangleMeshPointNormals.cxx | 4 +-- Accelerators/Vtkm/Filters/vtkmWarpScalar.cxx | 6 ++-- Accelerators/Vtkm/Filters/vtkmWarpVector.cxx | 6 ++-- IO/Fides/vtkFidesReader.cxx | 12 ++++---- ThirdParty/vtkm/vtkvtkm/vtk-m | 2 +- 34 files changed, 111 insertions(+), 104 deletions(-) diff --git a/.gitlab/ci/configure_fedora34_cuda_mpi_offscreen_osmesa.cmake b/.gitlab/ci/configure_fedora34_cuda_mpi_offscreen_osmesa.cmake index 81d0b1703707..8bb6bbf67d12 100644 --- a/.gitlab/ci/configure_fedora34_cuda_mpi_offscreen_osmesa.cmake +++ b/.gitlab/ci/configure_fedora34_cuda_mpi_offscreen_osmesa.cmake @@ -2,7 +2,7 @@ # issue: https://gitlab.kitware.com/vtk/fides/-/issues/13 set(VTK_MODULE_ENABLE_VTK_fides NO CACHE STRING "") -# Lowest-common denominator. -set(VTKm_CUDA_Architecture "pascal" CACHE STRING "") +# Lowest-common denominator. Pascal = 60 +set(CMAKE_CUDA_ARCHITECTURES 60 CACHE STRING "") include("${CMAKE_CURRENT_LIST_DIR}/configure_fedora34.cmake") diff --git a/Accelerators/Vtkm/DataModel/Testing/Cxx/TestVTKMDataSet.cxx b/Accelerators/Vtkm/DataModel/Testing/Cxx/TestVTKMDataSet.cxx index 2493ae5b03cf..ff113dfbff20 100644 --- a/Accelerators/Vtkm/DataModel/Testing/Cxx/TestVTKMDataSet.cxx +++ b/Accelerators/Vtkm/DataModel/Testing/Cxx/TestVTKMDataSet.cxx @@ -310,7 +310,9 @@ void TestUniformDataSet() void TestCurvilinearDataSet() { auto dataset = Maker.Make3DRegularDataSet0(); - auto dims = dataset.GetCellSet().Cast>().GetPointDimensions(); + vtkm::cont::CellSetStructured<3> css3; + dataset.GetCellSet().AsCellSet(css3); + auto dims = css3.GetPointDimensions(); vtkNew points; CoordsCopy(dataset.GetCoordinateSystem(), points); diff --git a/Accelerators/Vtkm/DataModel/vtkmDataSet.cxx b/Accelerators/Vtkm/DataModel/vtkmDataSet.cxx index f1ef72ffae91..626b7d2f045c 100644 --- a/Accelerators/Vtkm/DataModel/vtkmDataSet.cxx +++ b/Accelerators/Vtkm/DataModel/vtkmDataSet.cxx @@ -57,7 +57,7 @@ struct VtkmLocator struct vtkmDataSet::DataMembers { - vtkm::cont::DynamicCellSet CellSet; + vtkm::cont::UnknownCellSet CellSet; vtkm::cont::CoordinateSystem Coordinates; vtkNew Cell; diff --git a/Accelerators/Vtkm/DataModel/vtkmlib/ArrayConverters.cxx b/Accelerators/Vtkm/DataModel/vtkmlib/ArrayConverters.cxx index a1de6fad6ab2..668f0c1a42bc 100644 --- a/Accelerators/Vtkm/DataModel/vtkmlib/ArrayConverters.cxx +++ b/Accelerators/Vtkm/DataModel/vtkmlib/ArrayConverters.cxx @@ -140,12 +140,12 @@ bool ConvertArrays(const vtkm::cont::DataSet& input, vtkDataSet* output) { const vtkm::cont::Field& f = input.GetField(i); vtkDataArray* vfield = Convert(f); - if (vfield && f.GetAssociation() == vtkm::cont::Field::Association::POINTS) + if (vfield && f.GetAssociation() == vtkm::cont::Field::Association::Points) { pd->AddArray(vfield); vfield->FastDelete(); } - else if (vfield && f.GetAssociation() == vtkm::cont::Field::Association::CELL_SET) + else if (vfield && f.GetAssociation() == vtkm::cont::Field::Association::Cells) { cd->AddArray(vfield); vfield->FastDelete(); diff --git a/Accelerators/Vtkm/DataModel/vtkmlib/CellSetConverters.cxx b/Accelerators/Vtkm/DataModel/vtkmlib/CellSetConverters.cxx index d9b927981fe2..ad86752267b5 100644 --- a/Accelerators/Vtkm/DataModel/vtkmlib/CellSetConverters.cxx +++ b/Accelerators/Vtkm/DataModel/vtkmlib/CellSetConverters.cxx @@ -70,7 +70,7 @@ struct ReorderHex : vtkm::worklet::WorkletMapField struct BuildSingleTypeCellSetVisitor { template - vtkm::cont::DynamicCellSet operator()( + vtkm::cont::UnknownCellSet operator()( CellStateT& state, vtkm::UInt8 cellType, vtkm::IdComponent cellSize, vtkIdType numPoints) { using VTKIdT = typename CellStateT::ValueType; // might not be vtkIdType... @@ -98,7 +98,7 @@ struct BuildSingleTypeCellSetVisitor struct BuildSingleTypeVoxelCellSetVisitor { template - vtkm::cont::DynamicCellSet operator()(CellStateT& state, vtkIdType numPoints) + vtkm::cont::UnknownCellSet operator()(CellStateT& state, vtkIdType numPoints) { vtkm::cont::ArrayHandle connHandle; { @@ -131,7 +131,7 @@ struct BuildSingleTypeVoxelCellSetVisitor } // end anon namespace // convert a cell array of a single type to a vtkm CellSetSingleType -vtkm::cont::DynamicCellSet ConvertSingleType( +vtkm::cont::UnknownCellSet ConvertSingleType( vtkCellArray* cells, int cellType, vtkIdType numberOfPoints) { switch (cellType) @@ -186,7 +186,7 @@ namespace struct BuildExplicitCellSetVisitor { template - vtkm::cont::DynamicCellSet operator()(CellStateT& state, + vtkm::cont::UnknownCellSet operator()(CellStateT& state, const vtkm::cont::ArrayHandle& shapes, vtkm::Id numPoints) const { using VTKIdT = typename CellStateT::ValueType; // might not be vtkIdType... @@ -220,7 +220,7 @@ struct BuildExplicitCellSetVisitor } // end anon namespace // convert a cell array of mixed types to a vtkm CellSetExplicit -vtkm::cont::DynamicCellSet Convert( +vtkm::cont::UnknownCellSet Convert( vtkUnsignedCharArray* types, vtkCellArray* cells, vtkIdType numberOfPoints) { using ShapeArrayType = vtkAOSDataArrayTemplate; @@ -233,7 +233,7 @@ vtkm::cont::DynamicCellSet Convert( namespace fromvtkm { -bool Convert(const vtkm::cont::DynamicCellSet& toConvert, vtkCellArray* cells, +bool Convert(const vtkm::cont::UnknownCellSet& toConvert, vtkCellArray* cells, vtkUnsignedCharArray* typesArray) { const auto* cellset = toConvert.GetCellSetBase(); diff --git a/Accelerators/Vtkm/DataModel/vtkmlib/CellSetConverters.h b/Accelerators/Vtkm/DataModel/vtkmlib/CellSetConverters.h index 181982a60354..96108d67d3c3 100644 --- a/Accelerators/Vtkm/DataModel/vtkmlib/CellSetConverters.h +++ b/Accelerators/Vtkm/DataModel/vtkmlib/CellSetConverters.h @@ -21,7 +21,7 @@ #include "vtkmConfigDataModel.h" //required for general vtkm setup #include -#include +#include class vtkCellArray; class vtkUnsignedCharArray; @@ -30,11 +30,11 @@ class vtkIdTypeArray; namespace tovtkm { VTKACCELERATORSVTKMDATAMODEL_EXPORT -vtkm::cont::DynamicCellSet ConvertSingleType( +vtkm::cont::UnknownCellSet ConvertSingleType( vtkCellArray* cells, int cellType, vtkIdType numberOfPoints); VTKACCELERATORSVTKMDATAMODEL_EXPORT -vtkm::cont::DynamicCellSet Convert( +vtkm::cont::UnknownCellSet Convert( vtkUnsignedCharArray* types, vtkCellArray* cells, vtkIdType numberOfPoints); } @@ -42,7 +42,7 @@ namespace fromvtkm { VTKACCELERATORSVTKMDATAMODEL_EXPORT -bool Convert(const vtkm::cont::DynamicCellSet& toConvert, vtkCellArray* cells, +bool Convert(const vtkm::cont::UnknownCellSet& toConvert, vtkCellArray* cells, vtkUnsignedCharArray* types = nullptr); } diff --git a/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.cxx b/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.cxx index 0af4e20348ac..e7c547d1148d 100644 --- a/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.cxx +++ b/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.cxx @@ -237,7 +237,8 @@ bool Convert(const vtkm::cont::DataSet& vtkmOut, vtkRectilinearGrid* output, vtk using coordType = vtkm::cont::ArrayHandleCartesianProduct, vtkm::cont::ArrayHandle, vtkm::cont::ArrayHandle>; - auto coordsArray = vtkm::cont::Cast(vtkmOut.GetCoordinateSystem().GetData()); + coordType coordsArray; + vtkmOut.GetCoordinateSystem().GetData().AsArrayHandle(coordsArray); vtkSmartPointer xArray = Convert(vtkm::cont::make_FieldPoint("xArray", coordsArray.GetFirstArray())); diff --git a/Accelerators/Vtkm/DataModel/vtkmlib/ImageDataConverter.cxx b/Accelerators/Vtkm/DataModel/vtkmlib/ImageDataConverter.cxx index 92f5107af06a..d1c6ba59d542 100644 --- a/Accelerators/Vtkm/DataModel/vtkmlib/ImageDataConverter.cxx +++ b/Accelerators/Vtkm/DataModel/vtkmlib/ImageDataConverter.cxx @@ -53,9 +53,9 @@ struct ComputeExtents struct SetGlobalPointIndexStart { - template + template void operator()(const vtkm::cont::CellSetStructured&, const vtkm::Id3& structuredCoordsDims, - const int extent[6], DynamicCellSetType& dcs) const + const int extent[6], vtkm::cont::UnknownCellSet& dcs) const { typename vtkm::cont::CellSetStructured::SchedulingRangeType extStart{}; for (int i = 0, ii = 0; i < 3; ++i) @@ -65,7 +65,10 @@ struct SetGlobalPointIndexStart vtkm::VecTraits::SetComponent(extStart, ii++, extent[2 * i]); } } - vtkm::cont::Cast>(dcs).SetGlobalPointIndexStart(extStart); + + vtkm::cont::CellSetStructured cs; + dcs.AsCellSet(cs); + cs.SetGlobalPointIndexStart(extStart); } }; diff --git a/Accelerators/Vtkm/DataModel/vtkmlib/PolyDataConverter.cxx b/Accelerators/Vtkm/DataModel/vtkmlib/PolyDataConverter.cxx index 6bc8632eb9e6..c094a8f8b7f6 100644 --- a/Accelerators/Vtkm/DataModel/vtkmlib/PolyDataConverter.cxx +++ b/Accelerators/Vtkm/DataModel/vtkmlib/PolyDataConverter.cxx @@ -98,14 +98,14 @@ vtkm::cont::DataSet Convert(vtkPolyData* input, FieldsFlag fields) if (homoSize == 3) { // We are all triangles - vtkm::cont::DynamicCellSet dcells = ConvertSingleType(cells, VTK_TRIANGLE, numPoints); + auto dcells = ConvertSingleType(cells, VTK_TRIANGLE, numPoints); dataset.SetCellSet(dcells); filled = true; } else if (homoSize == 4) { // We are all quads - vtkm::cont::DynamicCellSet dcells = ConvertSingleType(cells, VTK_QUAD, numPoints); + auto dcells = ConvertSingleType(cells, VTK_QUAD, numPoints); dataset.SetCellSet(dcells); filled = true; } @@ -120,7 +120,7 @@ vtkm::cont::DataSet Convert(vtkPolyData* input, FieldsFlag fields) cells->Visit(build_type_array{}, types.GetPointer()); - vtkm::cont::DynamicCellSet dcells = Convert(types, cells, numPoints); + auto dcells = Convert(types, cells, numPoints); dataset.SetCellSet(dcells); filled = true; } @@ -132,7 +132,7 @@ vtkm::cont::DataSet Convert(vtkPolyData* input, FieldsFlag fields) if (homoSize == 2) { // We are all lines - vtkm::cont::DynamicCellSet dcells = ConvertSingleType(cells, VTK_LINE, numPoints); + auto dcells = ConvertSingleType(cells, VTK_LINE, numPoints); dataset.SetCellSet(dcells); filled = true; } @@ -150,7 +150,7 @@ vtkm::cont::DataSet Convert(vtkPolyData* input, FieldsFlag fields) if (homoSize == 1) { // We are all single vertex - vtkm::cont::DynamicCellSet dcells = ConvertSingleType(cells, VTK_VERTEX, numPoints); + auto dcells = ConvertSingleType(cells, VTK_VERTEX, numPoints); dataset.SetCellSet(dcells); filled = true; } @@ -194,7 +194,7 @@ bool Convert(const vtkm::cont::DataSet& voutput, vtkPolyData* output, vtkDataSet // this should be fairly easy as the cells are all a single cell type // so we just need to determine what cell type it is and copy the results // into a new array - vtkm::cont::DynamicCellSet const& outCells = voutput.GetCellSet(); + auto const& outCells = voutput.GetCellSet(); vtkNew cells; const bool cellsConverted = fromvtkm::Convert(outCells, cells.GetPointer()); if (!cellsConverted) diff --git a/Accelerators/Vtkm/DataModel/vtkmlib/UnstructuredGridConverter.cxx b/Accelerators/Vtkm/DataModel/vtkmlib/UnstructuredGridConverter.cxx index e093e1ae2069..3b084f0b0f94 100644 --- a/Accelerators/Vtkm/DataModel/vtkmlib/UnstructuredGridConverter.cxx +++ b/Accelerators/Vtkm/DataModel/vtkmlib/UnstructuredGridConverter.cxx @@ -60,13 +60,12 @@ vtkm::cont::DataSet Convert(vtkUnstructuredGrid* input, FieldsFlag fields) if (input->IsHomogeneous()) { int cellType = input->GetCellType(0); // get the celltype - vtkm::cont::DynamicCellSet cells = ConvertSingleType(input->GetCells(), cellType, numPoints); + auto cells = ConvertSingleType(input->GetCells(), cellType, numPoints); dataset.SetCellSet(cells); } else { - vtkm::cont::DynamicCellSet cells = - Convert(input->GetCellTypesArray(), input->GetCells(), numPoints); + auto cells = Convert(input->GetCellTypesArray(), input->GetCells(), numPoints); dataset.SetCellSet(cells); } @@ -96,7 +95,7 @@ bool Convert(const vtkm::cont::DataSet& voutput, vtkUnstructuredGrid* output, vt // vtkm to vtk vtkNew cells; vtkNew types; - vtkm::cont::DynamicCellSet const& outCells = voutput.GetCellSet(); + auto const& outCells = voutput.GetCellSet(); const bool cellsConverted = fromvtkm::Convert(outCells, cells.GetPointer(), types.GetPointer()); diff --git a/Accelerators/Vtkm/Filters/vtkmAverageToCells.cxx b/Accelerators/Vtkm/Filters/vtkmAverageToCells.cxx index ed9d58fe9171..0bd7d67bf523 100644 --- a/Accelerators/Vtkm/Filters/vtkmAverageToCells.cxx +++ b/Accelerators/Vtkm/Filters/vtkmAverageToCells.cxx @@ -26,7 +26,7 @@ #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmAverageToCells); @@ -67,8 +67,8 @@ int vtkmAverageToCells::RequestData(vtkInformation* vtkNotUsed(request), auto field = tovtkm::Convert(fieldArray, association); in.AddField(field); - vtkm::filter::CellAverage filter; - filter.SetActiveField(fieldName, vtkm::cont::Field::Association::POINTS); + vtkm::filter::field_conversion::CellAverage filter; + filter.SetActiveField(fieldName, vtkm::cont::Field::Association::Points); filter.SetOutputFieldName(fieldName); // should we expose this control? auto result = filter.Execute(in); diff --git a/Accelerators/Vtkm/Filters/vtkmAverageToPoints.cxx b/Accelerators/Vtkm/Filters/vtkmAverageToPoints.cxx index 00c722f3162e..59b46f0cea07 100644 --- a/Accelerators/Vtkm/Filters/vtkmAverageToPoints.cxx +++ b/Accelerators/Vtkm/Filters/vtkmAverageToPoints.cxx @@ -27,7 +27,7 @@ #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmAverageToPoints); @@ -68,8 +68,8 @@ int vtkmAverageToPoints::RequestData(vtkInformation* vtkNotUsed(request), auto field = tovtkm::Convert(fieldArray, association); in.AddField(field); - vtkm::filter::PointAverage filter; - filter.SetActiveField(fieldName, vtkm::cont::Field::Association::CELL_SET); + vtkm::filter::field_conversion::PointAverage filter; + filter.SetActiveField(fieldName, vtkm::cont::Field::Association::Cells); filter.SetOutputFieldName(fieldName); // should we expose this control? auto result = filter.Execute(in); diff --git a/Accelerators/Vtkm/Filters/vtkmCleanGrid.cxx b/Accelerators/Vtkm/Filters/vtkmCleanGrid.cxx index 0cfde7e99f8f..360adc9542e3 100644 --- a/Accelerators/Vtkm/Filters/vtkmCleanGrid.cxx +++ b/Accelerators/Vtkm/Filters/vtkmCleanGrid.cxx @@ -29,7 +29,7 @@ #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmCleanGrid); @@ -74,7 +74,7 @@ int vtkmCleanGrid::RequestData(vtkInformation* vtkNotUsed(request), vtkm::cont::DataSet in = tovtkm::Convert(input, fieldsFlag); // apply the filter - vtkm::filter::CleanGrid filter; + vtkm::filter::clean_grid::CleanGrid filter; filter.SetCompactPointFields(this->CompactPoints); auto result = filter.Execute(in); diff --git a/Accelerators/Vtkm/Filters/vtkmClipInstantiationsWithField.cxx b/Accelerators/Vtkm/Filters/vtkmClipInstantiationsWithField.cxx index e81b5cdab62a..a2d0ecb5beb3 100644 --- a/Accelerators/Vtkm/Filters/vtkmClipInstantiationsWithField.cxx +++ b/Accelerators/Vtkm/Filters/vtkmClipInstantiationsWithField.cxx @@ -16,13 +16,13 @@ #include "vtkmClipInternals.h" #include "vtkmlib/DataSetConverters.h" -#include +#include //------------------------------------------------------------------------------ vtkm::cont::DataSet vtkmClip::internals::ExecuteClipWithField( vtkm::cont::DataSet& in, vtkDataArray* scalars, int assoc) { - vtkm::filter::ClipWithField fieldFilter; + vtkm::filter::contour::ClipWithField fieldFilter; if (!this->ComputeScalars) { // explicitly convert just the field we need @@ -30,10 +30,10 @@ vtkm::cont::DataSet vtkmClip::internals::ExecuteClipWithField( in.AddField(inField); // don't pass this field fieldFilter.SetFieldsToPass( - vtkm::filter::FieldSelection(vtkm::filter::FieldSelection::MODE_NONE)); + vtkm::filter::FieldSelection(vtkm::filter::FieldSelection::Mode::None)); } - fieldFilter.SetActiveField(scalars->GetName(), vtkm::cont::Field::Association::POINTS); + fieldFilter.SetActiveField(scalars->GetName(), vtkm::cont::Field::Association::Points); fieldFilter.SetClipValue(this->ClipValue); return fieldFilter.Execute(in); } diff --git a/Accelerators/Vtkm/Filters/vtkmClipInstantiationsWithImplicitFunction.cxx b/Accelerators/Vtkm/Filters/vtkmClipInstantiationsWithImplicitFunction.cxx index 674d9b6e0dfe..bf1762090ccf 100644 --- a/Accelerators/Vtkm/Filters/vtkmClipInstantiationsWithImplicitFunction.cxx +++ b/Accelerators/Vtkm/Filters/vtkmClipInstantiationsWithImplicitFunction.cxx @@ -16,7 +16,7 @@ #include "vtkmClipInternals.h" #include "vtkmlib/DataSetConverters.h" -#include +#include //------------------------------------------------------------------------------ vtkm::cont::DataSet vtkmClip::internals::ExecuteClipWithImplicitFunction(vtkm::cont::DataSet& in) @@ -24,7 +24,7 @@ vtkm::cont::DataSet vtkmClip::internals::ExecuteClipWithImplicitFunction(vtkm::c auto function = this->ClipFunctionConverter->Get(); vtkm::cont::DataSet result; - vtkm::filter::ClipWithImplicitFunction functionFilter; + vtkm::filter::contour::ClipWithImplicitFunction functionFilter; functionFilter.SetImplicitFunction(function); result = functionFilter.Execute(in); diff --git a/Accelerators/Vtkm/Filters/vtkmContour.cxx b/Accelerators/Vtkm/Filters/vtkmContour.cxx index fb768daf0d6a..1e9660aba165 100644 --- a/Accelerators/Vtkm/Filters/vtkmContour.cxx +++ b/Accelerators/Vtkm/Filters/vtkmContour.cxx @@ -35,7 +35,7 @@ #include "vtkmFilterPolicy.h" #include -#include +#include vtkStandardNewMacro(vtkmContour); @@ -127,7 +127,7 @@ int vtkmContour::RequestData( } vtkm::filter::Contour filter; - filter.SetActiveField(inputArray->GetName(), vtkm::cont::Field::Association::POINTS); + filter.SetActiveField(inputArray->GetName(), vtkm::cont::Field::Association::Points); filter.SetGenerateNormals(this->GetComputeNormals() != 0); filter.SetNumberOfIsoValues(numContours); for (int i = 0; i < numContours; ++i) @@ -148,7 +148,8 @@ int vtkmContour::RequestData( auto inField = tovtkm::Convert(inputArray, association); in.AddField(inField); // don't pass this field - filter.SetFieldsToPass(vtkm::filter::FieldSelection(vtkm::filter::FieldSelection::MODE_NONE)); + filter.SetFieldsToPass( + vtkm::filter::FieldSelection(vtkm::filter::FieldSelection::Mode::None)); } vtkm::cont::DataSet result = filter.Execute(in); diff --git a/Accelerators/Vtkm/Filters/vtkmCoordinateSystemTransform.cxx b/Accelerators/Vtkm/Filters/vtkmCoordinateSystemTransform.cxx index 2fc5240e73bf..750e414de931 100644 --- a/Accelerators/Vtkm/Filters/vtkmCoordinateSystemTransform.cxx +++ b/Accelerators/Vtkm/Filters/vtkmCoordinateSystemTransform.cxx @@ -33,7 +33,8 @@ #include "vtkmFilterPolicy.h" -#include +#include +#include vtkStandardNewMacro(vtkmCoordinateSystemTransform); @@ -160,7 +161,7 @@ int vtkmCoordinateSystemTransform::RequestData( if (this->TransformType == TransformTypes::CarToCyl || this->TransformType == TransformTypes::CylToCar) { // Cylindrical coordinate transform - vtkm::filter::CylindricalCoordinateTransform cylindricalCT; + vtkm::filter::field_transform::CylindricalCoordinateTransform cylindricalCT; cylindricalCT.SetUseCoordinateSystemAsField(true); (this->TransformType == TransformTypes::CarToCyl) ? cylindricalCT.SetCartesianToCylindrical() : cylindricalCT.SetCylindricalToCartesian(); @@ -169,7 +170,7 @@ int vtkmCoordinateSystemTransform::RequestData( } else { // Spherical coordinate system - vtkm::filter::SphericalCoordinateTransform sphericalCT; + vtkm::filter::field_transform::SphericalCoordinateTransform sphericalCT; sphericalCT.SetUseCoordinateSystemAsField(true); (this->TransformType == TransformTypes::CarToSph) ? sphericalCT.SetCartesianToSpherical() : sphericalCT.SetSphericalToCartesian(); diff --git a/Accelerators/Vtkm/Filters/vtkmExternalFaces.cxx b/Accelerators/Vtkm/Filters/vtkmExternalFaces.cxx index 3661060164d7..d17f985db7f8 100644 --- a/Accelerators/Vtkm/Filters/vtkmExternalFaces.cxx +++ b/Accelerators/Vtkm/Filters/vtkmExternalFaces.cxx @@ -32,7 +32,7 @@ #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmExternalFaces); @@ -112,7 +112,7 @@ int vtkmExternalFaces::RequestData(vtkInformation* vtkNotUsed(request), auto in = tovtkm::Convert(input, tovtkm::FieldsFlag::PointsAndCells); // apply the filter - vtkm::filter::ExternalFaces filter; + vtkm::filter::entity_extraction::ExternalFaces filter; filter.SetCompactPoints(this->CompactPoints); filter.SetPassPolyData(true); auto result = filter.Execute(in); diff --git a/Accelerators/Vtkm/Filters/vtkmExtractVOI.cxx b/Accelerators/Vtkm/Filters/vtkmExtractVOI.cxx index 32bf94f63093..c3608c529125 100644 --- a/Accelerators/Vtkm/Filters/vtkmExtractVOI.cxx +++ b/Accelerators/Vtkm/Filters/vtkmExtractVOI.cxx @@ -26,7 +26,7 @@ #include "vtkmFilterPolicy.h" -#include "vtkm/filter/ExtractStructured.h" +#include "vtkm/filter/entity_extraction/ExtractStructured.h" vtkStandardNewMacro(vtkmExtractVOI); @@ -65,7 +65,7 @@ int vtkmExtractVOI::RequestData( } // apply the filter - vtkm::filter::ExtractStructured filter; + vtkm::filter::entity_extraction::ExtractStructured filter; filter.SetVOI(voi[0], voi[1], voi[2], voi[3], voi[4], voi[5]); filter.SetSampleRate(this->SampleRate[0], this->SampleRate[1], this->SampleRate[2]); filter.SetIncludeBoundary((this->IncludeBoundary != 0)); diff --git a/Accelerators/Vtkm/Filters/vtkmGradient.cxx b/Accelerators/Vtkm/Filters/vtkmGradient.cxx index 6aa284878c88..ce58a27d24ea 100644 --- a/Accelerators/Vtkm/Filters/vtkmGradient.cxx +++ b/Accelerators/Vtkm/Filters/vtkmGradient.cxx @@ -29,8 +29,8 @@ #include "vtkmFilterPolicy.h" -#include -#include +#include +#include vtkStandardNewMacro(vtkmGradient); @@ -89,8 +89,8 @@ int vtkmGradient::RequestData( vtkm::cont::Field field = tovtkm::Convert(inputArray, association); in.AddField(field); - const bool fieldIsPoint = field.GetAssociation() == vtkm::cont::Field::Association::POINTS; - const bool fieldIsCell = field.GetAssociation() == vtkm::cont::Field::Association::CELL_SET; + const bool fieldIsPoint = field.GetAssociation() == vtkm::cont::Field::Association::Points; + const bool fieldIsCell = field.GetAssociation() == vtkm::cont::Field::Association::Cells; const bool fieldIsVec = (inputArray->GetNumberOfComponents() == 3); const bool fieldIsScalar = inputArray->GetDataType() == VTK_FLOAT || inputArray->GetDataType() == VTK_DOUBLE; @@ -104,8 +104,8 @@ int vtkmGradient::RequestData( return this->Superclass::RequestData(request, inputVector, outputVector); } - auto passNoFields = vtkm::filter::FieldSelection(vtkm::filter::FieldSelection::MODE_NONE); - vtkm::filter::Gradient filter; + auto passNoFields = vtkm::filter::FieldSelection(vtkm::filter::FieldSelection::Mode::None); + vtkm::filter::vector_analysis::Gradient filter; filter.SetFieldsToPass(passNoFields); filter.SetColumnMajorOrdering(); @@ -146,7 +146,7 @@ int vtkmGradient::RequestData( if (fieldIsPoint) { filter.SetComputePointGradient(!this->FasterApproximation); - filter.SetActiveField(field.GetName(), vtkm::cont::Field::Association::POINTS); + filter.SetActiveField(field.GetName(), vtkm::cont::Field::Association::Points); result = filter.Execute(in); // When we have faster approximation enabled the VTK-m gradient will output @@ -154,7 +154,7 @@ int vtkmGradient::RequestData( // back to a point field if (this->FasterApproximation) { - vtkm::filter::PointAverage cellToPoint; + vtkm::filter::field_conversion::PointAverage cellToPoint; cellToPoint.SetFieldsToPass(passNoFields); auto c2pIn = result; @@ -163,28 +163,28 @@ int vtkmGradient::RequestData( if (this->ComputeGradient) { cellToPoint.SetActiveField( - filter.GetOutputFieldName(), vtkm::cont::Field::Association::CELL_SET); + filter.GetOutputFieldName(), vtkm::cont::Field::Association::Cells); auto ds = cellToPoint.Execute(c2pIn); result.AddField(ds.GetField(0)); } if (this->ComputeDivergence && fieldIsVec) { cellToPoint.SetActiveField( - filter.GetDivergenceName(), vtkm::cont::Field::Association::CELL_SET); + filter.GetDivergenceName(), vtkm::cont::Field::Association::Cells); auto ds = cellToPoint.Execute(c2pIn); result.AddField(ds.GetField(0)); } if (this->ComputeVorticity && fieldIsVec) { cellToPoint.SetActiveField( - filter.GetVorticityName(), vtkm::cont::Field::Association::CELL_SET); + filter.GetVorticityName(), vtkm::cont::Field::Association::Cells); auto ds = cellToPoint.Execute(c2pIn); result.AddField(ds.GetField(0)); } if (this->ComputeQCriterion && fieldIsVec) { cellToPoint.SetActiveField( - filter.GetQCriterionName(), vtkm::cont::Field::Association::CELL_SET); + filter.GetQCriterionName(), vtkm::cont::Field::Association::Cells); auto ds = cellToPoint.Execute(c2pIn); result.AddField(ds.GetField(0)); } @@ -193,14 +193,14 @@ int vtkmGradient::RequestData( else { // we need to convert the field to be a point field - vtkm::filter::PointAverage cellToPoint; + vtkm::filter::field_conversion::PointAverage cellToPoint; cellToPoint.SetFieldsToPass(passNoFields); cellToPoint.SetActiveField(field.GetName(), field.GetAssociation()); cellToPoint.SetOutputFieldName(field.GetName()); in = cellToPoint.Execute(in); filter.SetComputePointGradient(false); - filter.SetActiveField(field.GetName(), vtkm::cont::Field::Association::POINTS); + filter.SetActiveField(field.GetName(), vtkm::cont::Field::Association::Points); result = filter.Execute(in); } diff --git a/Accelerators/Vtkm/Filters/vtkmHistogram.cxx b/Accelerators/Vtkm/Filters/vtkmHistogram.cxx index c13fd7424776..df61dd71e937 100644 --- a/Accelerators/Vtkm/Filters/vtkmHistogram.cxx +++ b/Accelerators/Vtkm/Filters/vtkmHistogram.cxx @@ -32,7 +32,7 @@ #include "vtkSmartPointer.h" #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmHistogram); @@ -94,7 +94,7 @@ int vtkmHistogram::RequestData(vtkInformation* vtkNotUsed(request), auto field = tovtkm::Convert(fieldArray, association); in.AddField(field); - vtkm::filter::Histogram filter; + vtkm::filter::density_estimate::Histogram filter; filter.SetNumberOfBins(static_cast(this->NumberOfBins)); filter.SetActiveField(fieldName, field.GetAssociation()); diff --git a/Accelerators/Vtkm/Filters/vtkmImageConnectivity.cxx b/Accelerators/Vtkm/Filters/vtkmImageConnectivity.cxx index 29254a49b878..0125bb96ef60 100644 --- a/Accelerators/Vtkm/Filters/vtkmImageConnectivity.cxx +++ b/Accelerators/Vtkm/Filters/vtkmImageConnectivity.cxx @@ -27,7 +27,7 @@ #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmImageConnectivity); @@ -65,8 +65,8 @@ int vtkmImageConnectivity::RequestData( try { - vtkm::filter::ImageConnectivity filter; - filter.SetActiveField(inputArray->GetName(), vtkm::cont::Field::Association::POINTS); + vtkm::filter::connected_components::ImageConnectivity filter; + filter.SetActiveField(inputArray->GetName(), vtkm::cont::Field::Association::Points); // the field should be named 'RegionId' filter.SetOutputFieldName("RegionId"); @@ -76,7 +76,7 @@ int vtkmImageConnectivity::RequestData( inData.AddField(inField); // don't pass this field - filter.SetFieldsToPass(vtkm::filter::FieldSelection(vtkm::filter::FieldSelection::MODE_NONE)); + filter.SetFieldsToPass(vtkm::filter::FieldSelection(vtkm::filter::FieldSelection::Mode::None)); vtkm::cont::DataSet result; result = filter.Execute(inData); diff --git a/Accelerators/Vtkm/Filters/vtkmLevelOfDetail.cxx b/Accelerators/Vtkm/Filters/vtkmLevelOfDetail.cxx index db8d3f64b5e9..210f7b8169ab 100644 --- a/Accelerators/Vtkm/Filters/vtkmLevelOfDetail.cxx +++ b/Accelerators/Vtkm/Filters/vtkmLevelOfDetail.cxx @@ -30,7 +30,7 @@ #include "vtkmFilterPolicy.h" -#include +#include // To handle computing custom coordinate sets bounds we need to include // the following @@ -134,7 +134,7 @@ int vtkmLevelOfDetail::RequestData(vtkInformation* vtkNotUsed(request), return 0; } - vtkm::filter::VertexClustering filter; + vtkm::filter::geometry_refinement::VertexClustering filter; filter.SetNumberOfDivisions(vtkm::make_Vec( this->NumberOfDivisions[0], this->NumberOfDivisions[1], this->NumberOfDivisions[2])); diff --git a/Accelerators/Vtkm/Filters/vtkmNDHistogram.cxx b/Accelerators/Vtkm/Filters/vtkmNDHistogram.cxx index 52384771b037..2a6f6ac4fc94 100644 --- a/Accelerators/Vtkm/Filters/vtkmNDHistogram.cxx +++ b/Accelerators/Vtkm/Filters/vtkmNDHistogram.cxx @@ -30,7 +30,7 @@ #include "vtkmlib/ArrayConverters.h" #include "vtkmlib/DataSetConverters.h" -#include +#include vtkStandardNewMacro(vtkmNDHistogram); @@ -126,7 +126,7 @@ int vtkmNDHistogram::RequestData(vtkInformation* vtkNotUsed(request), { vtkm::cont::DataSet in = tovtkm::Convert(input, tovtkm::FieldsFlag::PointsAndCells); - vtkm::filter::NDHistogram filter; + vtkm::filter::density_estimate::NDHistogram filter; for (size_t i = 0; i < this->FieldNames.size(); i++) { filter.AddFieldAndBin(this->FieldNames[i], this->NumberOfBins[i]); diff --git a/Accelerators/Vtkm/Filters/vtkmPointElevation.cxx b/Accelerators/Vtkm/Filters/vtkmPointElevation.cxx index b5299933135f..9def68b26c5b 100644 --- a/Accelerators/Vtkm/Filters/vtkmPointElevation.cxx +++ b/Accelerators/Vtkm/Filters/vtkmPointElevation.cxx @@ -28,7 +28,7 @@ #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmPointElevation); @@ -64,7 +64,7 @@ int vtkmPointElevation::RequestData( auto in = tovtkm::Convert(input, tovtkm::FieldsFlag::Points); // Setup input - vtkm::filter::PointElevation filter; + vtkm::filter::field_transform::PointElevation filter; filter.SetLowPoint(this->LowPoint[0], this->LowPoint[1], this->LowPoint[2]); filter.SetHighPoint(this->HighPoint[0], this->HighPoint[1], this->HighPoint[2]); filter.SetRange(this->ScalarRange[0], this->ScalarRange[1]); diff --git a/Accelerators/Vtkm/Filters/vtkmPointTransform.cxx b/Accelerators/Vtkm/Filters/vtkmPointTransform.cxx index 685fb618764f..909fecdb8e4d 100644 --- a/Accelerators/Vtkm/Filters/vtkmPointTransform.cxx +++ b/Accelerators/Vtkm/Filters/vtkmPointTransform.cxx @@ -32,7 +32,7 @@ #include "vtkmlib/DataSetConverters.h" #include "vtkm/cont/Error.h" -#include "vtkm/filter/PointTransform.h" +#include "vtkm/filter/field_transform/PointTransform.h" #include "vtkmFilterPolicy.h" @@ -132,13 +132,13 @@ int vtkmPointTransform::RequestData(vtkInformation* vtkNotUsed(request), } } - vtkm::filter::PointTransform pointTransform; + vtkm::filter::field_transform::PointTransform pointTransform; pointTransform.SetUseCoordinateSystemAsField(true); pointTransform.SetTransform(vtkmMatrix); auto result = pointTransform.Execute(in); vtkDataArray* pointTransformResult = - fromvtkm::Convert(result.GetField("transform", vtkm::cont::Field::Association::POINTS)); + fromvtkm::Convert(result.GetField("transform", vtkm::cont::Field::Association::Points)); vtkPoints* newPts = vtkPoints::New(); // Update points newPts->SetNumberOfPoints(pointTransformResult->GetNumberOfTuples()); diff --git a/Accelerators/Vtkm/Filters/vtkmPolyDataNormals.cxx b/Accelerators/Vtkm/Filters/vtkmPolyDataNormals.cxx index c5d7b870c63c..56dd389059f2 100644 --- a/Accelerators/Vtkm/Filters/vtkmPolyDataNormals.cxx +++ b/Accelerators/Vtkm/Filters/vtkmPolyDataNormals.cxx @@ -26,7 +26,7 @@ #include "vtkmFilterPolicy.h" -#include "vtkm/filter/SurfaceNormals.h" +#include "vtkm/filter/vector_analysis/SurfaceNormals.h" vtkStandardNewMacro(vtkmPolyDataNormals); @@ -74,7 +74,7 @@ int vtkmPolyDataNormals::RequestData( bool unsupported = this->Splitting != 0; if (!unsupported) { - vtkm::filter::SurfaceNormals filter; + vtkm::filter::vector_analysis::SurfaceNormals filter; filter.SetGenerateCellNormals((this->ComputeCellNormals != 0)); filter.SetCellNormalsName("Normals"); filter.SetGeneratePointNormals((this->ComputePointNormals != 0)); diff --git a/Accelerators/Vtkm/Filters/vtkmProbe.cxx b/Accelerators/Vtkm/Filters/vtkmProbe.cxx index 32adf50ad470..029217ff660f 100644 --- a/Accelerators/Vtkm/Filters/vtkmProbe.cxx +++ b/Accelerators/Vtkm/Filters/vtkmProbe.cxx @@ -108,7 +108,7 @@ int vtkmProbe::RequestData(vtkInformation* vtkNotUsed(request), vtkInformationVe { const vtkm::cont::Field& field = result.GetField(i); vtkDataArray* fieldArray = fromvtkm::Convert(field); - if (field.GetAssociation() == vtkm::cont::Field::Association::POINTS) + if (field.GetAssociation() == vtkm::cont::Field::Association::Points) { if (strcmp(fieldArray->GetName(), "HIDDEN") == 0) { @@ -116,7 +116,7 @@ int vtkmProbe::RequestData(vtkInformation* vtkNotUsed(request), vtkInformationVe } output->GetPointData()->AddArray(fieldArray); } - else if (field.GetAssociation() == vtkm::cont::Field::Association::CELL_SET) + else if (field.GetAssociation() == vtkm::cont::Field::Association::Cells) { if (strcmp(fieldArray->GetName(), "HIDDEN") == 0) { diff --git a/Accelerators/Vtkm/Filters/vtkmThreshold.cxx b/Accelerators/Vtkm/Filters/vtkmThreshold.cxx index 647514050c42..05f8119ed394 100644 --- a/Accelerators/Vtkm/Filters/vtkmThreshold.cxx +++ b/Accelerators/Vtkm/Filters/vtkmThreshold.cxx @@ -30,7 +30,7 @@ #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmThreshold); @@ -63,7 +63,7 @@ int vtkmThreshold::RequestData( // convert the input dataset to a vtkm::cont::DataSet auto in = tovtkm::Convert(input, tovtkm::FieldsFlag::PointsAndCells); - vtkm::filter::Threshold filter; + vtkm::filter::entity_extraction::Threshold filter; filter.SetActiveField(inputArray->GetName()); filter.SetLowerThreshold(this->GetLowerThreshold()); filter.SetUpperThreshold(this->GetUpperThreshold()); diff --git a/Accelerators/Vtkm/Filters/vtkmTriangleMeshPointNormals.cxx b/Accelerators/Vtkm/Filters/vtkmTriangleMeshPointNormals.cxx index d46e436a3b9d..260464f05406 100644 --- a/Accelerators/Vtkm/Filters/vtkmTriangleMeshPointNormals.cxx +++ b/Accelerators/Vtkm/Filters/vtkmTriangleMeshPointNormals.cxx @@ -27,7 +27,7 @@ #include "vtkmFilterPolicy.h" -#include "vtkm/filter/SurfaceNormals.h" +#include "vtkm/filter/vector_analysis/SurfaceNormals.h" vtkStandardNewMacro(vtkmTriangleMeshPointNormals); @@ -67,7 +67,7 @@ int vtkmTriangleMeshPointNormals::RequestData( // convert the input dataset to a vtkm::cont::DataSet auto in = tovtkm::Convert(input, tovtkm::FieldsFlag::None); - vtkm::filter::SurfaceNormals filter; + vtkm::filter::vector_analysis::SurfaceNormals filter; filter.SetGenerateCellNormals(false); filter.SetNormalizeCellNormals(false); filter.SetGeneratePointNormals(true); diff --git a/Accelerators/Vtkm/Filters/vtkmWarpScalar.cxx b/Accelerators/Vtkm/Filters/vtkmWarpScalar.cxx index 6ccf703e5f81..4d13c6549f7e 100644 --- a/Accelerators/Vtkm/Filters/vtkmWarpScalar.cxx +++ b/Accelerators/Vtkm/Filters/vtkmWarpScalar.cxx @@ -33,7 +33,7 @@ #include "vtkm/cont/DataSetFieldAdd.h" #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmWarpScalar); @@ -108,7 +108,7 @@ int vtkmWarpScalar::RequestData(vtkInformation* vtkNotUsed(request), vtkm::Id numberOfPoints = in.GetCoordinateSystem().GetData().GetNumberOfValues(); // ScaleFactor in vtk is the scalarAmount in vtk-m. - vtkm::filter::WarpScalar warpScalar(this->ScaleFactor); + vtkm::filter::field_transform::WarpScalar warpScalar(this->ScaleFactor); warpScalar.SetUseCoordinateSystemAsField(true); // Get/generate the normal field @@ -156,7 +156,7 @@ int vtkmWarpScalar::RequestData(vtkInformation* vtkNotUsed(request), auto result = warpScalar.Execute(in); vtkDataArray* warpScalarResult = - fromvtkm::Convert(result.GetField("warpscalar", vtkm::cont::Field::Association::POINTS)); + fromvtkm::Convert(result.GetField("warpscalar", vtkm::cont::Field::Association::Points)); vtkPoints* newPts = vtkPoints::New(); // Update points newPts->SetNumberOfPoints(warpScalarResult->GetNumberOfTuples()); diff --git a/Accelerators/Vtkm/Filters/vtkmWarpVector.cxx b/Accelerators/Vtkm/Filters/vtkmWarpVector.cxx index 9b94ba5da8ea..853e1d2435df 100644 --- a/Accelerators/Vtkm/Filters/vtkmWarpVector.cxx +++ b/Accelerators/Vtkm/Filters/vtkmWarpVector.cxx @@ -33,7 +33,7 @@ #include "vtkm/cont/DataSetFieldAdd.h" #include "vtkmFilterPolicy.h" -#include +#include vtkStandardNewMacro(vtkmWarpVector); @@ -99,13 +99,13 @@ int vtkmWarpVector::RequestData(vtkInformation* vtkNotUsed(request), vtkm::cont::Field vectorField = tovtkm::Convert(vectors, vectorsAssociation); in.AddField(vectorField); - vtkm::filter::WarpVector warpVector(this->ScaleFactor); + vtkm::filter::field_transform::WarpVector warpVector(this->ScaleFactor); warpVector.SetUseCoordinateSystemAsField(true); warpVector.SetVectorField(vectorField.GetName(), vectorField.GetAssociation()); auto result = warpVector.Execute(in); vtkDataArray* warpVectorResult = - fromvtkm::Convert(result.GetField("warpvector", vtkm::cont::Field::Association::POINTS)); + fromvtkm::Convert(result.GetField("warpvector", vtkm::cont::Field::Association::Points)); vtkNew newPts; newPts->SetNumberOfPoints(warpVectorResult->GetNumberOfTuples()); diff --git a/IO/Fides/vtkFidesReader.cxx b/IO/Fides/vtkFidesReader.cxx index 3b4d5d76503f..242e9c951ef2 100644 --- a/IO/Fides/vtkFidesReader.cxx +++ b/IO/Fides/vtkFidesReader.cxx @@ -34,7 +34,7 @@ #include -#include +#include #include @@ -270,11 +270,11 @@ int vtkFidesReader::RequestInformation( fides::keys::FIELDS()); for (auto& field : fields.Data) { - if (field.Association == vtkm::cont::Field::Association::POINTS) + if (field.Association == vtkm::cont::Field::Association::Points) { this->PointDataArraySelection->AddArray(field.Name.c_str()); } - else if (field.Association == vtkm::cont::Field::Association::CELL_SET) + else if (field.Association == vtkm::cont::Field::Association::Cells) { this->CellDataArraySelection->AddArray(field.Name.c_str()); } @@ -372,7 +372,7 @@ vtkDataSet* ConvertDataSet(const vtkm::cont::DataSet& ds) return image; } } - vtkm::filter::CleanGrid filter; + vtkm::filter::clean_grid::CleanGrid filter; filter.SetCompactPointFields(false); auto result = filter.Execute(ds); return ConvertDataSet(result); @@ -446,7 +446,7 @@ int vtkFidesReader::RequestData( const char* aname = this->PointDataArraySelection->GetArrayName(i); if (this->PointDataArraySelection->ArrayIsEnabled(aname)) { - arraySelection.Data.emplace_back(aname, vtkm::cont::Field::Association::POINTS); + arraySelection.Data.emplace_back(aname, vtkm::cont::Field::Association::Points); } } int nCArrays = this->CellDataArraySelection->GetNumberOfArrays(); @@ -455,7 +455,7 @@ int vtkFidesReader::RequestData( const char* aname = this->CellDataArraySelection->GetArrayName(i); if (this->CellDataArraySelection->ArrayIsEnabled(aname)) { - arraySelection.Data.emplace_back(aname, vtkm::cont::Field::Association::CELL_SET); + arraySelection.Data.emplace_back(aname, vtkm::cont::Field::Association::Cells); } } selections.Set(fides::keys::FIELDS(), arraySelection); diff --git a/ThirdParty/vtkm/vtkvtkm/vtk-m b/ThirdParty/vtkm/vtkvtkm/vtk-m index bac7559926b3..d60bcd253650 160000 --- a/ThirdParty/vtkm/vtkvtkm/vtk-m +++ b/ThirdParty/vtkm/vtkvtkm/vtk-m @@ -1 +1 @@ -Subproject commit bac7559926b328199323bb314a6dffc5d93fbe52 +Subproject commit d60bcd253650a6d66551bf201d3d6a1301256ba4 -- GitLab From 3c564a38003f66119fd9d43731ba8ab1885f13fc Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 9 May 2022 06:55:11 -0400 Subject: [PATCH 0130/1015] vtkDataSetAttributes: Fix serial CopyData --- Common/DataModel/vtkDataSetAttributes.cxx | 100 +++++++++++++--------- 1 file changed, 58 insertions(+), 42 deletions(-) diff --git a/Common/DataModel/vtkDataSetAttributes.cxx b/Common/DataModel/vtkDataSetAttributes.cxx index 7924917dee9c..9d1d334e72e9 100644 --- a/Common/DataModel/vtkDataSetAttributes.cxx +++ b/Common/DataModel/vtkDataSetAttributes.cxx @@ -944,26 +944,31 @@ void vtkDataSetAttributes::CopyData( return; } - vtkIdType numberOfTuples = 1 + *std::max_element(toIds->begin(), toIds->end()); - for (const int i : this->RequiredArrays) + if (fromIds->GetNumberOfIds() < SMP_THRESHOLD) { - // This ensures thread safetiness in `InsertTuples` calls that will be performed in parallel. - vtkAbstractArray* array = this->GetAbstractArray(this->TargetIndices[i]); - if (numberOfTuples > array->GetNumberOfTuples()) + for (const auto& i : this->RequiredArrays) { - array->Resize(numberOfTuples); // this preserves already existing data - array->SetNumberOfTuples(numberOfTuples); // this sets MaxId + this->CopyTuples(fromPd->Data[i], this->Data[this->TargetIndices[i]], fromIds, toIds); } } - - CopyDataExplicitToExplicitWorker worker( - fromPd, this, this->RequiredArrays, this->TargetIndices, fromIds, toIds); - if (fromIds->GetNumberOfIds() < SMP_THRESHOLD) - { - worker(0, fromIds->GetNumberOfIds()); - } else { + CopyDataExplicitToExplicitWorker worker( + fromPd, this, this->RequiredArrays, this->TargetIndices, fromIds, toIds); + vtkIdType numberOfTuples = 1 + *std::max_element(toIds->begin(), toIds->end()); + for (const int i : this->RequiredArrays) + { + // This ensures thread safetiness in `InsertTuples` calls that will be performed in parallel. + vtkAbstractArray* array = this->GetAbstractArray(this->TargetIndices[i]); + if (numberOfTuples > array->GetSize() / array->GetNumberOfComponents()) + { + array->Resize(numberOfTuples); // this preserves already existing data + } + if (numberOfTuples > array->GetNumberOfTuples()) + { + array->SetNumberOfTuples(numberOfTuples); // this sets MaxId + } + } vtkSMPTools::For(0, fromIds->GetNumberOfIds(), worker); } } @@ -977,26 +982,32 @@ void vtkDataSetAttributes::CopyData( return; } - vtkIdType numberOfTuples = destStart + fromIds->GetNumberOfIds(); - for (const int i : this->RequiredArrays) + if (fromIds->GetNumberOfIds() < SMP_THRESHOLD) { - // This ensures thread safetiness in `InsertTuples` calls that will be performed in parallel. - vtkAbstractArray* array = this->GetAbstractArray(this->TargetIndices[i]); - if (numberOfTuples > array->GetNumberOfTuples()) + for (const auto& i : this->RequiredArrays) { - array->Resize(numberOfTuples); // this preserves already existing data - array->SetNumberOfTuples(numberOfTuples); // this sets MaxId + this->Data[this->TargetIndices[i]]->InsertTuplesStartingAt( + destStart, fromIds, fromPd->Data[i]); } } - - CopyDataExplicitToImplicitWorker worker( - fromPd, this, this->RequiredArrays, this->TargetIndices, fromIds, destStart); - if (fromIds->GetNumberOfIds() < SMP_THRESHOLD) - { - worker(0, fromIds->GetNumberOfIds()); - } else { + CopyDataExplicitToImplicitWorker worker( + fromPd, this, this->RequiredArrays, this->TargetIndices, fromIds, destStart); + vtkIdType numberOfTuples = destStart + fromIds->GetNumberOfIds(); + for (const int i : this->RequiredArrays) + { + // This ensures thread safetiness in `InsertTuples` calls that will be performed in parallel. + vtkAbstractArray* array = this->GetAbstractArray(this->TargetIndices[i]); + if (numberOfTuples > array->GetSize() / array->GetNumberOfComponents()) + { + array->Resize(numberOfTuples); // this preserves already existing data + } + if (numberOfTuples > array->GetNumberOfTuples()) + { + array->SetNumberOfTuples(numberOfTuples); // this sets MaxId + } + } vtkSMPTools::For(0, fromIds->GetNumberOfIds(), worker); } } @@ -1010,26 +1021,31 @@ void vtkDataSetAttributes::CopyData( return; } - vtkIdType numberOfTuples = dstStart + n; - for (const int i : this->RequiredArrays) + if (n < SMP_THRESHOLD) { - // This ensures thread safetiness in `InsertTuples` calls that will be performed in parallel. - vtkAbstractArray* array = this->GetAbstractArray(this->TargetIndices[i]); - if (numberOfTuples > array->GetNumberOfTuples()) + for (const auto& i : this->RequiredArrays) { - array->Resize(numberOfTuples); // this preserves already existing data - array->SetNumberOfTuples(numberOfTuples); // this sets MaxId + this->CopyTuples(fromPd->Data[i], this->Data[this->TargetIndices[i]], dstStart, n, srcStart); } } - - CopyDataImplicitToImplicitWorker worker( - fromPd, this, this->RequiredArrays, this->TargetIndices, srcStart, dstStart); - if (n < SMP_THRESHOLD) - { - worker(srcStart, srcStart + n); - } else { + CopyDataImplicitToImplicitWorker worker( + fromPd, this, this->RequiredArrays, this->TargetIndices, srcStart, dstStart); + vtkIdType numberOfTuples = dstStart + n; + for (const int i : this->RequiredArrays) + { + // This ensures thread safetiness in `InsertTuples` calls that will be performed in parallel. + vtkAbstractArray* array = this->GetAbstractArray(this->TargetIndices[i]); + if (numberOfTuples > array->GetSize() / array->GetNumberOfComponents()) + { + array->Resize(numberOfTuples); // this preserves already existing data + } + if (numberOfTuples > array->GetNumberOfTuples()) + { + array->SetNumberOfTuples(numberOfTuples); // this sets MaxId + } + } vtkSMPTools::For(srcStart, srcStart + n, worker); } } -- GitLab From f73b0de291645d865c0c694f2b7b65c6e3e05135 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 19:28:04 +0200 Subject: [PATCH 0131/1015] Make vtkInteractorEventRecorder ReadEvent usable ReadEvent was previously defined but never used anywhere and empty Make it usable and use it. Previous version is deprecated. --- Rendering/Core/vtkInteractorEventRecorder.cxx | 144 ++++++++++-------- Rendering/Core/vtkInteractorEventRecorder.h | 13 +- 2 files changed, 89 insertions(+), 68 deletions(-) diff --git a/Rendering/Core/vtkInteractorEventRecorder.cxx b/Rendering/Core/vtkInteractorEventRecorder.cxx index ef583160db1f..cdd05ed05363 100644 --- a/Rendering/Core/vtkInteractorEventRecorder.cxx +++ b/Rendering/Core/vtkInteractorEventRecorder.cxx @@ -13,6 +13,7 @@ =========================================================================*/ #include "vtkInteractorEventRecorder.h" + #include "vtkCallbackCommand.h" #include "vtkObjectFactory.h" #include "vtkRenderWindowInteractor.h" @@ -201,75 +202,11 @@ void vtkInteractorEventRecorder::Play() vtkDebugMacro(<< "Playing"); this->State = vtkInteractorEventRecorder::Playing; - // Read events and invoke them on the object in question - char event[256] = {}, keySym[256] = {}; - int pos[2], ctrlKey, shiftKey, altKey, keyCode, repeatCount; - float stream_version = 0.0f, tempf; std::string line; - + this->CurrentStreamVersion = 0; while (vtksys::SystemTools::GetLineFromStream(*this->InputStream, line)) { - std::istringstream iss(line); - - // Use classic locale, we don't want to parse float values with - // user-defined locale. - iss.imbue(std::locale::classic()); - - iss.width(256); - iss >> event; - - // Quick skip comment - if (*event == '#') - { - // Parse the StreamVersion (not using >> since comment could be empty) - // Expecting: # StreamVersion x.y - - if (strlen(line.c_str()) > 16 && !strncmp(line.c_str(), "# StreamVersion ", 16)) - { - int res = sscanf(line.c_str() + 16, "%f", &tempf); - if (res && res != EOF) - { - stream_version = tempf; - } - } - } - else - { - unsigned long ievent = vtkCommand::GetEventIdFromString(event); - if (ievent != vtkCommand::NoEvent) - { - iss >> pos[0]; - iss >> pos[1]; - if (stream_version >= 1.1) - { - int m; - iss >> m; - shiftKey = (m & ModifierKey::ShiftKey) ? 1 : 0; - ctrlKey = (m & ModifierKey::ControlKey) ? 1 : 0; - altKey = (m & ModifierKey::AltKey) ? 1 : 0; - } - else - { - iss >> ctrlKey; - iss >> shiftKey; - altKey = 0; - } - iss >> keyCode; - iss >> repeatCount; - iss >> keySym; - - this->Interactor->SetEventPosition(pos); - this->Interactor->SetControlKey(ctrlKey); - this->Interactor->SetShiftKey(shiftKey); - this->Interactor->SetAltKey(altKey); - this->Interactor->SetKeyCode(static_cast(keyCode)); - this->Interactor->SetRepeatCount(repeatCount); - this->Interactor->SetKeySym(keySym); - - this->Interactor->InvokeEvent(ievent, nullptr); - } - } - assert(iss.good() || iss.eof()); + this->ReadEvent(line); } } @@ -420,7 +357,80 @@ void vtkInteractorEventRecorder::WriteEvent( } //------------------------------------------------------------------------------ -void vtkInteractorEventRecorder::ReadEvent() {} +void vtkInteractorEventRecorder::ReadEvent(const std::string& line) +{ + // Read events and invoke them on the object in question + char event[256] = {}, keySym[256] = {}; + int pos[2], ctrlKey, shiftKey, altKey, keyCode, repeatCount; + float tempf; + + std::istringstream iss(line); + + // Use classic locale, we don't want to parse float values with + // user-defined locale. + iss.imbue(std::locale::classic()); + + iss.width(256); + iss >> event; + + // Quick skip comment + if (*event == '#') + { + // Parse the StreamVersion (not using >> since comment could be empty) + // Expecting: # StreamVersion x.y + + if (strlen(line.c_str()) > 16 && !strncmp(line.c_str(), "# StreamVersion ", 16)) + { + int res = sscanf(line.c_str() + 16, "%f", &tempf); + if (res && res != EOF) + { + this->CurrentStreamVersion = tempf; + } + } + } + else + { + if (this->CurrentStreamVersion == 0) + { + vtkWarningMacro("StreamVersion has not been read, parsing may be incorrect"); + } + + unsigned long ievent = vtkCommand::GetEventIdFromString(event); + if (ievent != vtkCommand::NoEvent) + { + iss >> pos[0]; + iss >> pos[1]; + if (this->CurrentStreamVersion >= 1.1) + { + int m; + iss >> m; + shiftKey = (m & ModifierKey::ShiftKey) ? 1 : 0; + ctrlKey = (m & ModifierKey::ControlKey) ? 1 : 0; + altKey = (m & ModifierKey::AltKey) ? 1 : 0; + } + else + { + iss >> ctrlKey; + iss >> shiftKey; + altKey = 0; + } + iss >> keyCode; + iss >> repeatCount; + iss >> keySym; + + this->Interactor->SetEventPosition(pos); + this->Interactor->SetControlKey(ctrlKey); + this->Interactor->SetShiftKey(shiftKey); + this->Interactor->SetAltKey(altKey); + this->Interactor->SetKeyCode(static_cast(keyCode)); + this->Interactor->SetRepeatCount(repeatCount); + this->Interactor->SetKeySym(keySym); + + this->Interactor->InvokeEvent(ievent, nullptr); + } + } + assert(iss.good() || iss.eof()); +} //------------------------------------------------------------------------------ void vtkInteractorEventRecorder::PrintSelf(ostream& os, vtkIndent indent) diff --git a/Rendering/Core/vtkInteractorEventRecorder.h b/Rendering/Core/vtkInteractorEventRecorder.h index f10eb8c7e357..ff19095cd050 100644 --- a/Rendering/Core/vtkInteractorEventRecorder.h +++ b/Rendering/Core/vtkInteractorEventRecorder.h @@ -34,9 +34,12 @@ #ifndef vtkInteractorEventRecorder_h #define vtkInteractorEventRecorder_h +#include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 #include "vtkInteractorObserver.h" #include "vtkRenderingCoreModule.h" // For export macro +class vtkStringArray; + // The superclass that all commands should be subclasses of class VTKRENDERINGCORE_EXPORT vtkInteractorEventRecorder : public vtkInteractorObserver { @@ -126,7 +129,14 @@ protected: virtual void WriteEvent( const char* event, int pos[2], int modifiers, int keyCode, int repeatCount, char* keySym); - virtual void ReadEvent(); + VTK_DEPRECATED_IN_9_2_0( + "This method was not used at all and has been replaced by ReadEvent(const std::string&)") + virtual void ReadEvent(){}; + + /** + * A method that parse a event line and invoke the corresponding event + */ + virtual void ReadEvent(const std::string& line); // Manage the state of the recorder int State; @@ -146,6 +156,7 @@ protected: }; static float StreamVersion; + float CurrentStreamVersion; private: vtkInteractorEventRecorder(const vtkInteractorEventRecorder&) = delete; -- GitLab From 06528450faa1318dd20c6679864b9d59ebf42112 Mon Sep 17 00:00:00 2001 From: Sujin Philip Date: Mon, 4 Apr 2022 13:41:31 -0400 Subject: [PATCH 0132/1015] Fixes for test failures with VTK-m override --- .../Vtkm/Core/vtkmlib/DataArrayConverters.cxx | 4 +- .../Vtkm/Core/vtkmlib/DataArrayConverters.h | 9 + .../Vtkm/Core/vtkmlib/DataArrayConverters.hxx | 16 +- .../DataModel/vtkmlib/DataSetConverters.cxx | 159 ++++++++++++++++-- .../DataModel/vtkmlib/DataSetConverters.h | 4 + Accelerators/Vtkm/Filters/vtkmContour.cxx | 107 ++++++++++-- Accelerators/Vtkm/Filters/vtkmContour.h | 9 +- .../Vtkm/Filters/vtkmFilterOverrides.cxx.in | 2 +- Documentation/dev/build.md | 2 +- .../dev/vtkm-contour-override-fixes.md | 9 + .../Core/Testing/Python/TestContourGrid.py | 2 +- .../Python/TestGridSynchronizedTemplates3D.py | 3 +- .../Python/TestSynchronizedTemplates3D.py | 2 +- Filters/Parallel/vtk.module | 1 + .../MultidimensionalSolution_3.png.sha512 | 1 + 15 files changed, 290 insertions(+), 40 deletions(-) create mode 100644 Documentation/release/dev/vtkm-contour-override-fixes.md create mode 100644 Filters/Programmable/Testing/Data/Baseline/MultidimensionalSolution_3.png.sha512 diff --git a/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.cxx b/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.cxx index a72f651982ce..89b5495201b9 100644 --- a/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.cxx +++ b/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.cxx @@ -158,7 +158,7 @@ vtkDataArray* Convert(const vtkm::cont::Field& input) { vtkm::cont::CastAndCall(vtkm::filter::ApplyPolicyFieldNotActive(input, policy), aConverter); data = aConverter.Data; - if (data) + if (data && (input.GetName() != tovtkm::NoNameVTKFieldName())) { data->SetName(input.GetName().c_str()); } @@ -180,7 +180,7 @@ vtkDataArray* Convert(const vtkm::cont::UnknownArrayHandle& input, const char* n { vtkm::cont::CastAndCall(input, aConverter); data = aConverter.Data; - if (data && name) + if (data && name && (std::string(name) != tovtkm::NoNameVTKFieldName())) { data->SetName(name); } diff --git a/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.h b/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.h index 5dc2a403bf42..adba2e48bd18 100644 --- a/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.h +++ b/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.h @@ -43,6 +43,15 @@ class CoordinateSystem; namespace tovtkm { +/// Temporary name for arrays converted from VTK that do not have a name. +/// Unnamed arrays seem to be supported by VTK, but VTK-m requires all fields to have a name. +/// +inline static const char* NoNameVTKFieldName() +{ + static const char* name = "NoNameVTKField"; + return name; +} + template struct DataArrayToArrayHandle; diff --git a/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.hxx b/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.hxx index 5042087ea91b..531c23a5d35d 100644 --- a/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.hxx +++ b/Accelerators/Vtkm/Core/vtkmlib/DataArrayConverters.hxx @@ -59,15 +59,27 @@ vtkm::cont::UnknownArrayHandle vtkDataArrayToUnknownArrayHandle(DataArrayType* i template vtkm::cont::Field ConvertPointField(DataArrayType* input) { + const char* name = input->GetName(); + if (!name || name[0] == '\0') + { + name = NoNameVTKFieldName(); + } + auto vhandle = vtkDataArrayToUnknownArrayHandle(input); - return vtkm::cont::make_FieldPoint(input->GetName(), vhandle); + return vtkm::cont::make_FieldPoint(name, vhandle); } template vtkm::cont::Field ConvertCellField(DataArrayType* input) { + const char* name = input->GetName(); + if (!name || name[0] == '\0') + { + name = NoNameVTKFieldName(); + } + auto vhandle = vtkDataArrayToUnknownArrayHandle(input); - return vtkm::cont::make_FieldCell(input->GetName(), vhandle); + return vtkm::cont::make_FieldCell(name, vhandle); } } // tovtkm diff --git a/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.cxx b/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.cxx index e7c547d1148d..955835a68a25 100644 --- a/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.cxx +++ b/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.cxx @@ -143,6 +143,119 @@ vtkm::cont::DataSet Convert(vtkStructuredGrid* input, FieldsFlag fields) return dataset; } +//------------------------------------------------------------------------------ +// convert rectilinear coordinates +template +vtkm::cont::CoordinateSystem ConvertRectilinearPoints( + vtkDataArray* xArray, vtkDataArray* yArray, vtkDataArray* zArray) +{ + vtkDataArray* vtkCompArrays[3] = { xArray, yArray, zArray }; + vtkm::cont::ArrayHandle vtkmCompArrays[3]; + + for (int i = 0; i < 3; ++i) + { + vtkAOSDataArrayTemplate* aos = vtkAOSDataArrayTemplate::FastDownCast(vtkCompArrays[i]); + if (aos) + { + vtkmCompArrays[i] = DataArrayToArrayHandle, 1>::Wrap(aos); + continue; + } + + vtkSOADataArrayTemplate* soa = vtkSOADataArrayTemplate::FastDownCast(vtkCompArrays[i]); + if (soa) + { + vtkmCompArrays[i] = DataArrayToArrayHandle, 1>::Wrap(soa); + continue; + } + + throw vtkm::cont::ErrorBadType("Unexpected rectilinear component array type (VTK)"); + } + + return vtkm::cont::CoordinateSystem("coords", + vtkm::cont::make_ArrayHandleCartesianProduct( + vtkmCompArrays[0], vtkmCompArrays[1], vtkmCompArrays[2])); +} + +//------------------------------------------------------------------------------ +// convert a rectilinear grid type +vtkm::cont::DataSet Convert(vtkRectilinearGrid* input, FieldsFlag fields) +{ + const int dimensionality = input->GetDataDimension(); + int dims[3]; + input->GetDimensions(dims); + + int extent[6]; + input->GetExtent(extent); + + vtkm::cont::DataSet dataset; + + // first step, convert the points x, y aqnd z arrays over + if (input->GetXCoordinates()->GetDataType() == VTK_DOUBLE) + { + dataset.AddCoordinateSystem(ConvertRectilinearPoints( + input->GetXCoordinates(), input->GetYCoordinates(), input->GetZCoordinates())); + } + else // assume float + { + dataset.AddCoordinateSystem(ConvertRectilinearPoints( + input->GetXCoordinates(), input->GetYCoordinates(), input->GetZCoordinates())); + } + + // second step is to create structured cellset that represe + if (dimensionality == 1) + { + vtkm::cont::CellSetStructured<1> cells; + if (dims[0] > 1) + { + cells.SetPointDimensions(dims[0]); + cells.SetGlobalPointIndexStart(extent[0]); + } + else if (dims[1] > 1) + { + cells.SetPointDimensions(dims[1]); + cells.SetGlobalPointIndexStart(extent[2]); + } + else + { + cells.SetPointDimensions(dims[2]); + cells.SetGlobalPointIndexStart(extent[4]); + } + dataset.SetCellSet(cells); + } + else if (dimensionality == 2) + { + vtkm::cont::CellSetStructured<2> cells; + if (dims[0] == 1) + { + cells.SetPointDimensions(vtkm::make_Vec(dims[1], dims[2])); + cells.SetGlobalPointIndexStart(vtkm::make_Vec(extent[2], extent[4])); + } + else if (dims[1] == 1) + { + cells.SetPointDimensions(vtkm::make_Vec(dims[0], dims[2])); + cells.SetGlobalPointIndexStart(vtkm::make_Vec(extent[0], extent[4])); + } + else + { + cells.SetPointDimensions(vtkm::make_Vec(dims[0], dims[1])); + cells.SetGlobalPointIndexStart(vtkm::make_Vec(extent[0], extent[2])); + } + + dataset.SetCellSet(cells); + } + else // going to presume 3d for everything else + { + vtkm::cont::CellSetStructured<3> cells; + cells.SetPointDimensions(vtkm::make_Vec(dims[0], dims[1], dims[2])); + cells.SetGlobalPointIndexStart(vtkm::make_Vec(extent[0], extent[2], extent[4])); + dataset.SetCellSet(cells); + } + + ProcessFields(input, dataset, fields); + + return dataset; +} + //------------------------------------------------------------------------------ // determine the type and call the proper Convert routine vtkm::cont::DataSet Convert(vtkDataSet* input, FieldsFlag fields) @@ -158,9 +271,10 @@ vtkm::cont::DataSet Convert(vtkDataSet* input, FieldsFlag fields) return Convert(vtkImageData::SafeDownCast(input), fields); case VTK_POLY_DATA: return Convert(vtkPolyData::SafeDownCast(input), fields); + case VTK_RECTILINEAR_GRID: + return Convert(vtkRectilinearGrid::SafeDownCast(input), fields); case VTK_UNSTRUCTURED_GRID_BASE: - case VTK_RECTILINEAR_GRID: case VTK_STRUCTURED_POINTS: default: return vtkm::cont::DataSet(); @@ -234,18 +348,37 @@ bool Convert(const vtkm::cont::DataSet& vtkmOut, vtkRectilinearGrid* output, vtk vtkm::cont::CellSetStructured<2>, vtkm::cont::CellSetStructured<3>>; auto cellSet = vtkmOut.GetCellSet().ResetCellSetList(ListCellSetStructured{}); - using coordType = - vtkm::cont::ArrayHandleCartesianProduct, - vtkm::cont::ArrayHandle, vtkm::cont::ArrayHandle>; - coordType coordsArray; - vtkmOut.GetCoordinateSystem().GetData().AsArrayHandle(coordsArray); - - vtkSmartPointer xArray = - Convert(vtkm::cont::make_FieldPoint("xArray", coordsArray.GetFirstArray())); - vtkSmartPointer yArray = - Convert(vtkm::cont::make_FieldPoint("yArray", coordsArray.GetSecondArray())); - vtkSmartPointer zArray = - Convert(vtkm::cont::make_FieldPoint("zArray", coordsArray.GetThirdArray())); + vtkSmartPointer xArray, yArray, zArray; + if (vtkmOut.GetCoordinateSystem().GetData().template IsValueType()) + { + using coordArrayType = + vtkm::cont::ArrayHandleCartesianProduct, + vtkm::cont::ArrayHandle, vtkm::cont::ArrayHandle>; + coordArrayType coordsArray; + vtkmOut.GetCoordinateSystem().GetData().AsArrayHandle(coordsArray); + + xArray.TakeReference( + Convert(vtkm::cont::make_FieldPoint("xArray", coordsArray.GetFirstArray()))); + yArray.TakeReference( + Convert(vtkm::cont::make_FieldPoint("yArray", coordsArray.GetSecondArray()))); + zArray.TakeReference( + Convert(vtkm::cont::make_FieldPoint("zArray", coordsArray.GetThirdArray()))); + } + else // vtkm::Float64 + { + using coordArrayType = + vtkm::cont::ArrayHandleCartesianProduct, + vtkm::cont::ArrayHandle, vtkm::cont::ArrayHandle>; + coordArrayType coordsArray; + vtkmOut.GetCoordinateSystem().GetData().AsArrayHandle(coordsArray); + + xArray.TakeReference( + Convert(vtkm::cont::make_FieldPoint("xArray", coordsArray.GetFirstArray()))); + yArray.TakeReference( + Convert(vtkm::cont::make_FieldPoint("yArray", coordsArray.GetSecondArray()))); + zArray.TakeReference( + Convert(vtkm::cont::make_FieldPoint("zArray", coordsArray.GetThirdArray()))); + } if (!xArray || !yArray || !zArray) { diff --git a/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.h b/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.h index 65b4aa4b0b0d..2dfdff22f4a9 100644 --- a/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.h +++ b/Accelerators/Vtkm/DataModel/vtkmlib/DataSetConverters.h @@ -43,6 +43,10 @@ vtkm::cont::CoordinateSystem Convert(vtkPoints* points); VTKACCELERATORSVTKMDATAMODEL_EXPORT vtkm::cont::DataSet Convert(vtkStructuredGrid* input, FieldsFlag fields = FieldsFlag::None); +// convert a rectilinear grid type +VTKACCELERATORSVTKMDATAMODEL_EXPORT +vtkm::cont::DataSet Convert(vtkRectilinearGrid* input, FieldsFlag fields); + // determine the type and call the proper Convert routine VTKACCELERATORSVTKMDATAMODEL_EXPORT vtkm::cont::DataSet Convert(vtkDataSet* input, FieldsFlag fields = FieldsFlag::None); diff --git a/Accelerators/Vtkm/Filters/vtkmContour.cxx b/Accelerators/Vtkm/Filters/vtkmContour.cxx index 1e9660aba165..3d4d45abedb8 100644 --- a/Accelerators/Vtkm/Filters/vtkmContour.cxx +++ b/Accelerators/Vtkm/Filters/vtkmContour.cxx @@ -36,6 +36,7 @@ #include #include +#include vtkStandardNewMacro(vtkmContour); @@ -52,12 +53,29 @@ void vtkmContour::PrintSelf(ostream& os, vtkIndent indent) } //------------------------------------------------------------------------------ -bool vtkmContour::IsSupportedInput(vtkDataSet* input) +bool vtkmContour::CanProcessInput(vtkDataSet* input) { + // vtkm::filter::contour::Contour currently does not support gradient field generation + if (this->GetComputeGradients()) + { + return false; + } + + // currently, vtkm::filter::contour::Contour always generates single precision points + auto pointSet = vtkPointSet::SafeDownCast(input); + if ((this->GetOutputPointsPrecision() == vtkAlgorithm::DOUBLE_PRECISION) || + (this->GetOutputPointsPrecision() == vtkAlgorithm::DEFAULT_PRECISION && pointSet && + pointSet->GetPoints()->GetDataType() != VTK_FLOAT)) + { + return false; + } + auto imageData = vtkImageData::SafeDownCast(input); if (imageData && imageData->GetDataDimension() == 3) { - return true; + // Currently, vtkm's flying edges implementation crashes for some cases. + // Temporarily disabling this code path + return false; } auto rectilinearGrid = vtkRectilinearGrid::SafeDownCast(input); @@ -94,6 +112,56 @@ bool vtkmContour::IsSupportedInput(vtkDataSet* input) return false; } +//------------------------------------------------------------------------------ +struct OrientationTransform : vtkm::worklet::WorkletMapField +{ + using ControlSignature = void(FieldIn, WholeArrayInOut); + using ExecutionSignature = void(_1, _2); + + template + VTKM_EXEC void operator()(vtkm::Id idx, ConnPortal conn) const + { + auto temp = conn.Get(idx); + conn.Set(idx, conn.Get(idx + 2)); + conn.Set(idx + 2, temp); + } +}; + +struct Negate : vtkm::worklet::WorkletMapField +{ + using ControlSignature = void(FieldInOut); + using ExecutionSignature = void(_1); + + template + VTKM_EXEC void operator()(T& v) const + { + v *= T(-1); + } +}; + +void ChangeTriangleOrientation(vtkm::cont::DataSet& dataset) +{ + vtkm::cont::Invoker invoke; + + vtkm::cont::CellSetSingleType<> cs; + dataset.GetCellSet().AsCellSet(cs); + vtkm::cont::ArrayHandle conn = + cs.GetConnectivityArray(vtkm::TopologyElementTagCell(), vtkm::TopologyElementTagPoint()); + invoke(OrientationTransform{}, + vtkm::cont::make_ArrayHandleCounting(0, 3, conn.GetNumberOfValues() / 3), conn); + + auto numPoints = cs.GetNumberOfPoints(); + cs.Fill(numPoints, vtkm::CellShapeTagTriangle::Id, 3, conn); + dataset.SetCellSet(cs); + + if (dataset.HasPointField("Normals")) + { + vtkm::cont::ArrayHandle normals; + dataset.GetPointField("Normals").GetData().AsArrayHandle(normals); + invoke(Negate{}, normals); + } +} + //------------------------------------------------------------------------------ int vtkmContour::RequestData( vtkInformation* request, vtkInformationVector** inputVector, vtkInformationVector* outputVector) @@ -103,32 +171,40 @@ int vtkmContour::RequestData( vtkDataSet* input = vtkDataSet::SafeDownCast(inInfo->Get(vtkDataObject::DATA_OBJECT())); vtkPolyData* output = vtkPolyData::SafeDownCast(outInfo->Get(vtkDataObject::DATA_OBJECT())); + // Nothing to process, return early + if (this->GetNumberOfContours() == 0 || input->GetNumberOfCells() == 0) + { + return 1; + } + // Find the scalar array: int association = this->GetInputArrayAssociation(0, inputVector); vtkDataArray* inputArray = this->GetInputArrayToProcess(0, inputVector); - if (association != vtkDataObject::FIELD_ASSOCIATION_POINTS || inputArray == nullptr || - inputArray->GetName() == nullptr || inputArray->GetName()[0] == '\0') + if (association != vtkDataObject::FIELD_ASSOCIATION_POINTS || inputArray == nullptr) { vtkErrorMacro("Invalid scalar array; array missing or not a point array."); return 0; } - const int numContours = this->GetNumberOfContours(); - if (numContours == 0) - { - return 1; - } - try { - if (!vtkmContour::IsSupportedInput(input)) + if (!this->CanProcessInput(input)) + { + throw vtkm::cont::ErrorFilterExecution( + "Input dataset/parameters not supported by vtkmContour."); + } + + const char* scalarFieldName = inputArray->GetName(); + if (!scalarFieldName || scalarFieldName[0] == '\0') { - throw vtkm::cont::ErrorFilterExecution("Input dataset is not supported by vtkmContour."); + scalarFieldName = tovtkm::NoNameVTKFieldName(); } - vtkm::filter::Contour filter; - filter.SetActiveField(inputArray->GetName(), vtkm::cont::Field::Association::Points); + const int numContours = this->GetNumberOfContours(); + vtkm::filter::contour::Contour filter; + filter.SetActiveField(scalarFieldName, vtkm::cont::Field::Association::Points); filter.SetGenerateNormals(this->GetComputeNormals() != 0); + filter.SetNormalArrayName("Normals"); filter.SetNumberOfIsoValues(numContours); for (int i = 0; i < numContours; ++i) { @@ -153,6 +229,7 @@ int vtkmContour::RequestData( } vtkm::cont::DataSet result = filter.Execute(in); + ChangeTriangleOrientation(result); // convert back the dataset to VTK if (!fromvtkm::Convert(result, output, input)) @@ -172,7 +249,7 @@ int vtkmContour::RequestData( } catch (const vtkm::cont::Error& e) { - vtkWarningMacro(<< "VTK-m error: " << e.GetMessage() << "\n" + vtkWarningMacro(<< "VTK-m failed with message: " << e.GetMessage() << "\n" << "Falling back to the default VTK implementation."); return this->Superclass::RequestData(request, inputVector, outputVector); } diff --git a/Accelerators/Vtkm/Filters/vtkmContour.h b/Accelerators/Vtkm/Filters/vtkmContour.h index fff9ac95a832..547a0908b476 100644 --- a/Accelerators/Vtkm/Filters/vtkmContour.h +++ b/Accelerators/Vtkm/Filters/vtkmContour.h @@ -43,9 +43,14 @@ public: void PrintSelf(ostream& os, vtkIndent indent) override; static vtkmContour* New(); - static bool IsSupportedInput(vtkDataSet* input); - protected: + /// \brief Check if the input dataset and parameters combination is supported by this filter + /// + /// Certain input and parameters combinations are not currently supported by vtkm. + /// This information is internally used to determine if this filter should fall back to + /// Superclass implementaion. + bool CanProcessInput(vtkDataSet* input); + vtkmContour(); ~vtkmContour() override; diff --git a/Accelerators/Vtkm/Filters/vtkmFilterOverrides.cxx.in b/Accelerators/Vtkm/Filters/vtkmFilterOverrides.cxx.in index 6dc5b2197397..bc7809cc2ba8 100644 --- a/Accelerators/Vtkm/Filters/vtkmFilterOverrides.cxx.in +++ b/Accelerators/Vtkm/Filters/vtkmFilterOverrides.cxx.in @@ -22,7 +22,7 @@ namespace { -bool vtkmFilterOverridesEnabled = false; +bool vtkmFilterOverridesEnabled = static_cast(VTK_ENABLE_VTKM_OVERRIDES); struct FilterOverrides { diff --git a/Documentation/dev/build.md b/Documentation/dev/build.md index 8c3823601724..51c38cfbab7a 100644 --- a/Documentation/dev/build.md +++ b/Documentation/dev/build.md @@ -277,7 +277,7 @@ More advanced options: `vtkObjectFactoryNewMacro` or `vtkAbstractObjectFactoryNewMacro`. * `VTK_ENABLE_VTKM_OVERRIDES` (default `OFF`): If `ON`, enables factory override of certain VTK filters by their VTK-m counterparts. There is also a runtime - switch that should also be turned on to enable this feature. + switch that can be used to enable/disable the overrides at run-time (on by default). It can be accessed using the static function `vtkmFilterOverrides::SetEnabled(bool)`. The VTK module system provides a number of variables to control modules which diff --git a/Documentation/release/dev/vtkm-contour-override-fixes.md b/Documentation/release/dev/vtkm-contour-override-fixes.md new file mode 100644 index 000000000000..0269b9d2baa5 --- /dev/null +++ b/Documentation/release/dev/vtkm-contour-override-fixes.md @@ -0,0 +1,9 @@ +## VTK-m filter override runtime flag enabled by default + +When building with `VTK::AcceleratorsVTKmFilters` module enabled, a CMake option called +`VTK_ENABLE_VTKM_OVERRIDES` can be turned on to enable overriding existing VTK filters, +like `vtkContourFilter`, using VTK's factory mechanism. + +There is also a run-time switch that can be used to enable/disable the factory override +at runtime. It is available through the function `vtkmFilterOverrides::SetEnabled(bool)`. +The runtime switch is now `On` by default. diff --git a/Filters/Core/Testing/Python/TestContourGrid.py b/Filters/Core/Testing/Python/TestContourGrid.py index e62b2916298e..c011260dd9d1 100755 --- a/Filters/Core/Testing/Python/TestContourGrid.py +++ b/Filters/Core/Testing/Python/TestContourGrid.py @@ -14,7 +14,7 @@ class TestContourGrid(Testing.vtkTest): input = reader.GetOutput().GetBlock(0).GetBlock(0); - cf = vtk.vtkContourFilter() + cf = vtk.vtkContourGrid() cf.SetInputData(input) cf.SetValue(0,400) cf.SetInputArrayToProcess(0, 0, 0, 0, "Temp"); diff --git a/Filters/Core/Testing/Python/TestGridSynchronizedTemplates3D.py b/Filters/Core/Testing/Python/TestGridSynchronizedTemplates3D.py index 4d21c3d361f9..a87a8fd86182 100755 --- a/Filters/Core/Testing/Python/TestGridSynchronizedTemplates3D.py +++ b/Filters/Core/Testing/Python/TestGridSynchronizedTemplates3D.py @@ -20,8 +20,7 @@ class TestGridSynchronizedTemplates3D(Testing.vtkTest): max = range[1] value = (min + max) / 2.0 - # cf = vtk.vtkGridSynchronizedTemplates3D() - cf = vtk.vtkContourFilter() + cf = vtk.vtkGridSynchronizedTemplates3D() cf.SetInputData(pl3d_output) cf.SetValue(0, value) cf.GenerateTrianglesOff() diff --git a/Filters/Core/Testing/Python/TestSynchronizedTemplates3D.py b/Filters/Core/Testing/Python/TestSynchronizedTemplates3D.py index 39c76c7c20ae..d29d20d7d8b3 100755 --- a/Filters/Core/Testing/Python/TestSynchronizedTemplates3D.py +++ b/Filters/Core/Testing/Python/TestSynchronizedTemplates3D.py @@ -14,7 +14,7 @@ class TestSynchronizedTemplates3D(Testing.vtkTest): reader.SetDataMask(0x7fff) # write isosurface to file #vtkSynchronizedTemplates3D stemp - stemp = vtk.vtkContourFilter() + stemp = vtk.vtkSynchronizedTemplates3D() stemp.SetInputConnection(reader.GetOutputPort()) stemp.SetValue(0,1150) diff --git a/Filters/Parallel/vtk.module b/Filters/Parallel/vtk.module index 0dd375c4c4e7..4a34a890866d 100644 --- a/Filters/Parallel/vtk.module +++ b/Filters/Parallel/vtk.module @@ -42,6 +42,7 @@ TEST_DEPENDS VTK::TestingCore VTK::TestingRendering TEST_OPTIONAL_DEPENDS + VTK::AcceleratorsVTKmFilters VTK::FiltersParallelGeometry VTK::FiltersParallelMPI VTK::ParallelMPI diff --git a/Filters/Programmable/Testing/Data/Baseline/MultidimensionalSolution_3.png.sha512 b/Filters/Programmable/Testing/Data/Baseline/MultidimensionalSolution_3.png.sha512 new file mode 100644 index 000000000000..499401bbd242 --- /dev/null +++ b/Filters/Programmable/Testing/Data/Baseline/MultidimensionalSolution_3.png.sha512 @@ -0,0 +1 @@ +73422d902ebec1bce4cf4beb4d00605a3ad84013d460f1c908b1702380866f826c4849b96e88d2c803c6c31a406d470bedaef0de7830455a84a73990b550cfe3 -- GitLab From 9b19379e3d4b8ff2757624246f6f963a2bc38266 Mon Sep 17 00:00:00 2001 From: Sujin Philip Date: Mon, 4 Apr 2022 09:55:03 -0400 Subject: [PATCH 0133/1015] Gitlab CI for testing VTK-m override --- .gitlab-ci.yml | 21 +++++++++++++++++++ .gitlab/ci/cdash-groups.json | 5 +++++ ...ure_fedora34_mpi_python_vtkmoverride.cmake | 1 + .gitlab/ci/configure_options.cmake | 3 +++ .gitlab/ci/ctest_exclusions.cmake | 8 +++++++ .gitlab/os-linux.yml | 8 +++++++ 6 files changed, 46 insertions(+) create mode 100644 .gitlab/ci/configure_fedora34_mpi_python_vtkmoverride.cmake diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index e6e24906b294..92f712c6bd00 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -232,6 +232,27 @@ fedora34-mpi-python-qt-stdthread:test: needs: - fedora34-mpi-python-qt-tbb:build +fedora34-mpi-python-vtkmoverride:build: + extends: + - .fedora34_mpi_python_vtkmoverride + - .cmake_build_linux + - .linux_qt_builder_tags + - .cmake_build_artifacts + - .run_manually + timeout: 90 minutes + +fedora34-mpi-python-vtkmoverride:test: + extends: + - .fedora34_mpi_python_vtkmoverride + - .cmake_test_linux + - .linux_qt_tester_tags + - .cmake_test_artifacts + - .run_automatically + dependencies: + - fedora34-mpi-python-vtkmoverride:build + needs: + - fedora34-mpi-python-vtkmoverride:build + ## Python wheel builds diff --git a/.gitlab/ci/cdash-groups.json b/.gitlab/ci/cdash-groups.json index 63bd133adb50..1f2f81c9b9fe 100644 --- a/.gitlab/ci/cdash-groups.json +++ b/.gitlab/ci/cdash-groups.json @@ -60,6 +60,11 @@ "site": "gitlab-ci", "buildname": "[fedora34_mpi_python_qt_tbb_tidy]" }, + { + "group": "master", + "site": "gitlab-ci", + "buildname": "[fedora34_mpi_python_vtkmoverride]" + }, { "group": "master", "site": "gitlab-ci", diff --git a/.gitlab/ci/configure_fedora34_mpi_python_vtkmoverride.cmake b/.gitlab/ci/configure_fedora34_mpi_python_vtkmoverride.cmake new file mode 100644 index 000000000000..ae994c7377f1 --- /dev/null +++ b/.gitlab/ci/configure_fedora34_mpi_python_vtkmoverride.cmake @@ -0,0 +1 @@ +include("${CMAKE_CURRENT_LIST_DIR}/configure_fedora34.cmake") diff --git a/.gitlab/ci/configure_options.cmake b/.gitlab/ci/configure_options.cmake index fead978e5ad1..02b7bcb5fc79 100644 --- a/.gitlab/ci/configure_options.cmake +++ b/.gitlab/ci/configure_options.cmake @@ -77,3 +77,6 @@ if ("$ENV{CMAKE_CONFIGURATION}" MATCHES "shared") elseif ("$ENV{CMAKE_CONFIGURATION}" MATCHES "static") set(VTK_BUILD_SHARED_LIBS OFF CACHE BOOL "") endif () + +# vtkmoverride +configuration_flag(VTK_ENABLE_VTKM_OVERRIDES "vtkmoverride") diff --git a/.gitlab/ci/ctest_exclusions.cmake b/.gitlab/ci/ctest_exclusions.cmake index 2c5607957694..5c963e6f191e 100644 --- a/.gitlab/ci/ctest_exclusions.cmake +++ b/.gitlab/ci/ctest_exclusions.cmake @@ -240,6 +240,14 @@ if ("$ENV{CMAKE_CONFIGURATION}" MATCHES "stdthread") "^VTK::FiltersModelingPython-TestCookieCutter4$") endif () +if ("$ENV{CMAKE_CONFIGURATION}" MATCHES "vtkmoverride") + list(APPEND test_exclusions + # vtkmContour behaves differently than vtkContourFilter for these tests. + # Further investigation is needed to determine how to best handle these cases. + "^VTK::FiltersModelingPython-TestBoxFunction$" + "^VTK::FiltersCorePython-TestContourCases$") +endif () + string(REPLACE ";" "|" test_exclusions "${test_exclusions}") if (test_exclusions) set(test_exclusions "(${test_exclusions})") diff --git a/.gitlab/os-linux.yml b/.gitlab/os-linux.yml index 6457652a2c79..198352f4b2a1 100644 --- a/.gitlab/os-linux.yml +++ b/.gitlab/os-linux.yml @@ -190,6 +190,14 @@ variables: CMAKE_CONFIGURATION: fedora34_mpi_python_qt_stdthread +.fedora34_mpi_python_vtkmoverride: + extends: + - .fedora34 + - .fedora_mpich_addon + + variables: + CMAKE_CONFIGURATION: fedora34_mpi_python_vtkmoverride + .fedora34_tidy: extends: - .fedora34 -- GitLab From 5b33154fb5d98fa80a28c500b91d09f66866647a Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Tue, 10 May 2022 00:01:23 -0400 Subject: [PATCH 0134/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index b73acc7aae40..cd66bdd46a43 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220509) +set(VTK_BUILD_VERSION 20220510) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 7b1f19f40a28eccbdb8b6c87b2277c2066803f44 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:06:02 +0200 Subject: [PATCH 0135/1015] const value to value in vtkStaticCellLocator --- Common/DataModel/vtkStaticCellLocator.cxx | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index f15ff6d00784..378ecb54bd7a 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -278,7 +278,7 @@ struct vtkCellProcessor const double o[3], const double n[3], double tolerance, vtkIdList* cells) = 0; virtual int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) = 0; - virtual int IntersectWithLine(const double p1[3], const double p2[3], const double tol, + virtual int IntersectWithLine(const double p1[3], const double p2[3], double tol, vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) = 0; virtual bool InsideCellBounds(const double x[3], vtkIdType cellId) = 0; virtual vtkIdType FindClosestPointWithinRadius(const double x[3], double radius, @@ -336,7 +336,7 @@ struct CellProcessor : public vtkCellProcessor binBounds[5] = binBounds[4] + h[2]; } - static bool IsInBounds(const double bounds[6], const double x[3], const double tol = 0.0) + static bool IsInBounds(const double bounds[6], const double x[3], double tol = 0.0) { return (bounds[0] - tol) <= x[0] && x[0] <= (bounds[1] + tol) && (bounds[2] - tol) <= x[1] && x[1] <= (bounds[3] + tol) && (bounds[4] - tol) <= x[2] && x[2] <= (bounds[5] + tol); @@ -350,7 +350,7 @@ struct CellProcessor : public vtkCellProcessor const double o[3], const double n[3], double tolerance, vtkIdList* cells) override; int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; - int IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, + int IntersectWithLine(const double p1[3], const double p2[3], double tol, vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) override; bool InsideCellBounds(const double x[3], vtkIdType cellId) override; vtkIdType FindClosestPointWithinRadius(const double x[3], double radius, double closestPoint[3], @@ -583,7 +583,7 @@ struct IntersectionInfo // cells in intersected bins are placed into the output cellId vtkIdList. See // the IntersectWithLine method for more information on voxel traversal. template -int CellProcessor::IntersectWithLine(const double p1[3], const double p2[3], const double tol, +int CellProcessor::IntersectWithLine(const double p1[3], const double p2[3], double tol, vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) { // Initialize the list of points/cells -- GitLab From fc2a9f746ab918db6d2c2780c16cc5d55406ab25 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:08:12 +0200 Subject: [PATCH 0136/1015] Remove useless constr in struct --- Filters/Core/vtkPolyDataPlaneCutter.cxx | 2 -- 1 file changed, 2 deletions(-) diff --git a/Filters/Core/vtkPolyDataPlaneCutter.cxx b/Filters/Core/vtkPolyDataPlaneCutter.cxx index 23e8fe0a980c..ad4e1fef8fe8 100644 --- a/Filters/Core/vtkPolyDataPlaneCutter.cxx +++ b/Filters/Core/vtkPolyDataPlaneCutter.cxx @@ -144,8 +144,6 @@ struct EvaluatePointsWorker { bool Intersects; - EvaluatePointsWorker() {} - template void operator()(DataT* pts, vtkPlane* plane, std::vector& ptMap) { -- GitLab From d466e6c6c2196fcb445b9750a9f9e5ab1e04359c Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Mon, 9 May 2022 09:56:07 +0200 Subject: [PATCH 0137/1015] Hide some PythonWrapping related tidy warnings --- .clang-tidy | 1 + 1 file changed, 1 insertion(+) diff --git a/.clang-tidy b/.clang-tidy index b850d347a376..876fb23485ad 100644 --- a/.clang-tidy +++ b/.clang-tidy @@ -88,6 +88,7 @@ readability-*,\ -readability-redundant-declaration,\ -readability-redundant-preprocessor,\ -readability-simplify-boolean-expr,\ +-readability-static-accessed-through-instance,\ -readability-uppercase-literal-suffix,\ -readability-use-anyofallof,\ " -- GitLab From a0f881e9af132fd589309414b9c612788d885a5f Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Mon, 9 May 2022 13:59:45 +0200 Subject: [PATCH 0138/1015] Fix a tidy issue in text readers setting std::string to "\0" is a noop, removing it. --- IO/Infovis/vtkDelimitedTextReader.cxx | 8 ++------ IO/TecplotTable/vtkTecplotTableReader.cxx | 8 ++------ 2 files changed, 4 insertions(+), 12 deletions(-) diff --git a/IO/Infovis/vtkDelimitedTextReader.cxx b/IO/Infovis/vtkDelimitedTextReader.cxx index 4c7d36ba7995..7b8024fdf51c 100644 --- a/IO/Infovis/vtkDelimitedTextReader.cxx +++ b/IO/Infovis/vtkDelimitedTextReader.cxx @@ -182,11 +182,7 @@ public: { std::string curr_char; utf8::append(value, std::back_inserter(curr_char)); - if (curr_char == "0") - { - this->CurrentField += "\0"; - } - else if (curr_char == "a") + if (curr_char == "a") { this->CurrentField += "\a"; } @@ -218,7 +214,7 @@ public: { this->CurrentField += "\\"; } - else + else if (!(curr_char == "0")) { this->CurrentField += curr_char; } diff --git a/IO/TecplotTable/vtkTecplotTableReader.cxx b/IO/TecplotTable/vtkTecplotTableReader.cxx index c34dbb74cc3a..8eedff454cdb 100644 --- a/IO/TecplotTable/vtkTecplotTableReader.cxx +++ b/IO/TecplotTable/vtkTecplotTableReader.cxx @@ -207,11 +207,7 @@ public: { std::string curr_char; utf8::append(value, std::back_inserter(curr_char)); - if (curr_char == "0") - { - this->CurrentField += "\0"; - } - else if (curr_char == "a") + if (curr_char == "a") { this->CurrentField += "\a"; } @@ -243,7 +239,7 @@ public: { this->CurrentField += "\\"; } - else + else if (!(curr_char == "0")) { this->CurrentField += curr_char; } -- GitLab From d9db3260cd3c6fafab5bb6be42ac0d895b053a86 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Mon, 9 May 2022 14:03:36 +0200 Subject: [PATCH 0139/1015] Using empty() instead of size() == 0 --- IO/AMR/vtkAMReXGridReaderInternal.cxx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/IO/AMR/vtkAMReXGridReaderInternal.cxx b/IO/AMR/vtkAMReXGridReaderInternal.cxx index f69de9949c77..e557877b10c5 100644 --- a/IO/AMR/vtkAMReXGridReaderInternal.cxx +++ b/IO/AMR/vtkAMReXGridReaderInternal.cxx @@ -1093,7 +1093,7 @@ void vtkAMReXGridReaderInternal::GetExtraMultiFabBlockAttribute( constexpr long ieee_double[] = { 64L, 11L, 52L, 0L, 1L, 12L, 0L, 0x3FFL }; // get the index of the extra multifab - if (this->Header->extraMultiFabParsedVarNames[attribute].size() == 0) + if (this->Header->extraMultiFabParsedVarNames[attribute].empty()) { return; // variable is malformed or nonexistent } -- GitLab From ed71b3bd40ef039e0d5d2141892fb56a11a9b0fa Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Mon, 9 May 2022 14:03:46 +0200 Subject: [PATCH 0140/1015] Fix missing throw --- IO/CatalystConduit/vtkConduitArrayUtilities.cxx | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/IO/CatalystConduit/vtkConduitArrayUtilities.cxx b/IO/CatalystConduit/vtkConduitArrayUtilities.cxx index fdd0ece3f690..ce00566f01b9 100644 --- a/IO/CatalystConduit/vtkConduitArrayUtilities.cxx +++ b/IO/CatalystConduit/vtkConduitArrayUtilities.cxx @@ -131,7 +131,7 @@ static vtkSmartPointer ChangeComponentsAOS(vtkDataArray* array, in using Dispatch = vtkArrayDispatch::DispatchByArray; if (!Dispatch::Execute(result, worker)) { - std::runtime_error("Failed to strip extra components from array!"); + throw std::runtime_error("Failed to strip extra components from array!"); } return result; } @@ -170,7 +170,7 @@ static vtkSmartPointer ChangeComponentsSOA(vtkDataArray* array, in using Dispatch = vtkArrayDispatch::DispatchByArray; if (!Dispatch::Execute(array, worker)) { - std::runtime_error("Failed to strip extra components from array!"); + throw std::runtime_error("Failed to strip extra components from array!"); } return array; } -- GitLab From f992ce317bad77f0d3d0945802e44ee5dbcbe2a6 Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Mon, 9 May 2022 11:36:31 +0200 Subject: [PATCH 0141/1015] Corrects specular test in volumetric rendering --- Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h | 2 ++ 1 file changed, 2 insertions(+) diff --git a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h index 28e01f9fb9e0..77afcba2cda7 100644 --- a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h +++ b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h @@ -1205,6 +1205,7 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n {\ \n diffuse = nDotL * in_diffuse[component] *\ \n in_lightDiffuseColor[0] * color.rgb;\ + \n vDotR = max(vDotR, 0.0);\ \n specular = pow(vDotR, in_shininess[component]) *\ \n in_specular[component] *\ \n in_lightSpecularColor[0];\ @@ -1504,6 +1505,7 @@ std::string ComputeLightingMultiDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVol \n {\ \n diffuse = nDotL * in_diffuse[component] *\ \n in_lightDiffuseColor[0] * color.rgb;\ + \n vDotR = max(vDotR, 0.0);\ \n specular = pow(vDotR, in_shininess[component]) *\ \n in_specular[component] *\ \n in_lightSpecularColor[0];\ -- GitLab From d43d44f4388cf36ae337611ecd8273580de4bc45 Mon Sep 17 00:00:00 2001 From: Zach Jibben Date: Thu, 5 May 2022 16:34:16 -0600 Subject: [PATCH 0142/1015] Use Truchas FIELDNAME attributes as the displayed field name --- IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx | 2 +- IO/TRUCHAS/vtkTRUCHASReader.cxx | 38 ++++++++++++++++++-- 2 files changed, 37 insertions(+), 3 deletions(-) diff --git a/IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx b/IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx index 9b756001bbde..84609122a06d 100644 --- a/IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx +++ b/IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx @@ -202,7 +202,7 @@ int TestTRUCHASReader(int argc, char* argv[]) double tNext = tAlpha - 0.1 + i * (tOmega - tAlpha) * 2.5 / divs; reader->UpdateTimeStep(tNext); grid = vtkUnstructuredGrid::SafeDownCast(reader->GetOutput()->GetBlock(1)); - da = vtkDoubleArray::SafeDownCast(grid->GetCellData()->GetArray("dTdt")); + da = vtkDoubleArray::SafeDownCast(grid->GetCellData()->GetArray("dT/dt")); double* mM = da->GetRange(); cerr << "ts " << i << ":" << tNext << " got " << mM[0] << "," << mM[1] << endl; if (!AE(mM[0], expectedRanges[i][0]) || !AE(mM[1], expectedRanges[i][1])) diff --git a/IO/TRUCHAS/vtkTRUCHASReader.cxx b/IO/TRUCHAS/vtkTRUCHASReader.cxx index 79659fecc006..1021f04c57f0 100644 --- a/IO/TRUCHAS/vtkTRUCHASReader.cxx +++ b/IO/TRUCHAS/vtkTRUCHASReader.cxx @@ -959,6 +959,22 @@ int vtkTRUCHASReader::RequestData( continue; } + // get the visualization field name + char field_name[MAX_NAME + 1]; + if (H5Aexists_by_name(now_gid, array_name, "FIELDNAME", H5P_DEFAULT)) + { + memset(field_name, 0, strlen(field_name)); + hid_t attr = H5Aopen(did, "FIELDNAME", H5P_DEFAULT); + hid_t atype = H5Aget_type(attr); + hid_t atype_mem = H5Tget_native_type(atype, H5T_DIR_ASCEND); + H5Aread(attr, atype_mem, field_name); + H5Aclose(attr); + } + else + { + strncpy(field_name, array_name, MAX_NAME); + } + bool isFloat = this->Internals->array_isFloat[array_name]; double** vals_out = nullptr; int** ivals_out = nullptr; @@ -1032,8 +1048,26 @@ int vtkTRUCHASReader::RequestData( { vArray = vtkIntArray::New(); } - vArray->SetName(array_name); + vArray->SetName(field_name); vArray->SetNumberOfComponents(dims[1]); + if (strncmp(array_name, "VOF", 3) == 0) + { + // For the VOF field, name the components by the given FIELDNAMEX attribute. + for (int i = 0; i < dims[1]; i++) + { + std::string attr_name = "FIELDNAME" + std::to_string(i + 1); + if (!H5Aexists_by_name(now_gid, array_name, attr_name.c_str(), H5P_DEFAULT)) + continue; + hid_t attr = H5Aopen(did, attr_name.c_str(), H5P_DEFAULT); + hid_t atype = H5Aget_type(attr); + hid_t atype_mem = H5Tget_native_type(atype, H5T_DIR_ASCEND); + char component_name[MAX_NAME + 1]; + memset(component_name, 0, MAX_NAME); + H5Aread(attr, atype_mem, component_name); + H5Aclose(attr); + vArray->SetComponentName(i, component_name); + } + } vArray->SetNumberOfTuples(grid[b]->GetNumberOfCells()); arrayGroup->AddArray(vArray); vArray->Delete(); @@ -1062,7 +1096,7 @@ int vtkTRUCHASReader::RequestData( { mArray = vtkIntArray::New(); } - mArray->SetName(array_name); + mArray->SetName(field_name); mArray->SetNumberOfComponents(dims[1]); mArray->SetNumberOfTuples(totalNumPoints); this->Internals->PointData->AddArray(mArray); -- GitLab From dd91706ae47c4e52910b3c57fb7777a256e3f09e Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 11:00:31 -0400 Subject: [PATCH 0143/1015] vtkCellLocator: Implement ShallowCopy --- Common/DataModel/vtkAbstractCellLocator.cxx | 13 +-- Common/DataModel/vtkAbstractCellLocator.h | 9 +- Common/DataModel/vtkCellLocator.cxx | 92 +++++++++++++-------- Common/DataModel/vtkCellLocator.h | 10 ++- 4 files changed, 79 insertions(+), 45 deletions(-) diff --git a/Common/DataModel/vtkAbstractCellLocator.cxx b/Common/DataModel/vtkAbstractCellLocator.cxx index 8655bf296801..72b3398fd84e 100644 --- a/Common/DataModel/vtkAbstractCellLocator.cxx +++ b/Common/DataModel/vtkAbstractCellLocator.cxx @@ -56,16 +56,17 @@ bool vtkAbstractCellLocator::StoreCellBounds() } // Allocate space for cell bounds storage, then fill vtkIdType numCells = this->DataSet->GetNumberOfCells(); - this->CellBounds = new double[numCells][6]; + this->CellBoundsSharedPtr = std::make_shared>(numCells * 6); + this->CellBounds = this->CellBoundsSharedPtr->data(); // This is done to cause non-thread safe initialization to occur due to // side effects from GetCellBounds(). - this->DataSet->GetCellBounds(0, this->CellBounds[0]); + this->DataSet->GetCellBounds(0, &this->CellBounds[0]); vtkSMPTools::For(1, numCells, [&](vtkIdType begin, vtkIdType end) { for (vtkIdType cellId = begin; cellId < end; cellId++) { - this->DataSet->GetCellBounds(cellId, this->CellBounds[cellId]); + this->DataSet->GetCellBounds(cellId, &this->CellBounds[cellId * 6]); } }); return true; @@ -74,7 +75,7 @@ bool vtkAbstractCellLocator::StoreCellBounds() //------------------------------------------------------------------------------ void vtkAbstractCellLocator::FreeCellBounds() { - delete[] this->CellBounds; + this->CellBoundsSharedPtr.reset(); this->CellBounds = nullptr; } @@ -263,7 +264,7 @@ bool vtkAbstractCellLocator::InsideCellBounds(double x[3], vtkIdType cell_ID) { if (this->CacheCellBounds) { - return vtkAbstractCellLocator::IsInBounds(this->CellBounds[cell_ID], x); + return vtkAbstractCellLocator::IsInBounds(&this->CellBounds[cell_ID * 6], x); } else { @@ -278,7 +279,7 @@ void vtkAbstractCellLocator::GetCellBounds(vtkIdType cellId, double*& cellBounds { if (this->CacheCellBounds) { - cellBoundsPtr = this->CellBounds[cellId]; + cellBoundsPtr = &this->CellBounds[cellId * 6]; } else { diff --git a/Common/DataModel/vtkAbstractCellLocator.h b/Common/DataModel/vtkAbstractCellLocator.h index c2d2be1341ab..c236aea552d4 100644 --- a/Common/DataModel/vtkAbstractCellLocator.h +++ b/Common/DataModel/vtkAbstractCellLocator.h @@ -42,6 +42,7 @@ #include "vtkLocator.h" #include "vtkNew.h" // For vtkNew +#include // For shared_ptr #include // For Weights class vtkCellArray; @@ -316,6 +317,11 @@ public: */ virtual bool InsideCellBounds(double x[3], vtkIdType cell_ID); + /** + * Shallow copy of a vtkAbstractCellLocator. + */ + virtual void ShallowCopy(vtkAbstractCellLocator*) {} + protected: vtkAbstractCellLocator(); ~vtkAbstractCellLocator() override; @@ -342,7 +348,8 @@ protected: vtkTypeBool RetainCellLists; vtkTypeBool CacheCellBounds; vtkNew GenericCell; - double (*CellBounds)[6]; + std::shared_ptr> CellBoundsSharedPtr; + double* CellBounds; // The is just used for simplicity in the internal code /** * This time stamp helps us decide if we want to update internal `Weights` array size. diff --git a/Common/DataModel/vtkCellLocator.cxx b/Common/DataModel/vtkCellLocator.cxx index 1a247558ad75..397652ce6083 100644 --- a/Common/DataModel/vtkCellLocator.cxx +++ b/Common/DataModel/vtkCellLocator.cxx @@ -27,13 +27,9 @@ #include #include +//------------------------------------------------------------------------------ vtkStandardNewMacro(vtkCellLocator); -#define VTK_CELL_OUTSIDE 0 -#define VTK_CELL_INSIDE 1 - -typedef vtkIdList* vtkIdListPtr; - //------------------------------------------------------------------------------ vtkCellLocator::vtkNeighborCells::vtkNeighborCells(const int size) { @@ -83,6 +79,7 @@ vtkCellLocator::vtkCellLocator() this->NumberOfOctants = 0; this->Bounds[0] = this->Bounds[2] = this->Bounds[4] = VTK_DOUBLE_MAX; this->Bounds[1] = this->Bounds[3] = this->Bounds[5] = VTK_DOUBLE_MIN; + this->Tree = nullptr; } //------------------------------------------------------------------------------ @@ -95,24 +92,9 @@ vtkCellLocator::~vtkCellLocator() //------------------------------------------------------------------------------ void vtkCellLocator::FreeSearchStructure() { - vtkIdList* cellIds; - int i; - if (this->Tree) { - for (i = 0; i < this->NumberOfOctants; i++) - { - cellIds = this->Tree[i]; - if (cellIds == reinterpret_cast(VTK_CELL_INSIDE)) - { - cellIds = nullptr; - } - if (cellIds) - { - cellIds->Delete(); - } - } - delete[] this->Tree; + this->TreeSharedPtr.reset(); this->Tree = nullptr; } } @@ -754,7 +736,7 @@ void vtkCellLocator::BuildLocatorInternal() int i, j, k, ijkMin[3], ijkMax[3]; vtkIdType cellId, idx; int parentOffset; - vtkIdList* octant; + vtkSmartPointer octant; int numCellsPerBucket = this->NumberOfCellsPerNode; int prod, numOctants; double hTol[3]; @@ -805,9 +787,9 @@ void vtkCellLocator::BuildLocatorInternal() this->NumberOfDivisions = ndivs; this->NumberOfOctants = numOctants; - this->Tree = new vtkIdListPtr[numOctants]; - // NOLINTNEXTLINE(bugprone-sizeof-expression) - memset(this->Tree, 0, numOctants * sizeof(*this->Tree)); + this->TreeSharedPtr = + std::make_shared>>(numOctants, nullptr); + this->Tree = TreeSharedPtr->data(); if (this->CacheCellBounds) { @@ -826,6 +808,7 @@ void vtkCellLocator::BuildLocatorInternal() // falls within octant. parentOffset = numOctants - (ndivs * ndivs * ndivs); product = ndivs * ndivs; + auto parentOctant = vtkSmartPointer::New(); // This is just a place-holder for parents for (cellId = 0; cellId < numCells; cellId++) { this->GetCellBounds(cellId, cellBoundsPtr); @@ -856,11 +839,11 @@ void vtkCellLocator::BuildLocatorInternal() for (i = ijkMin[0]; i <= ijkMax[0]; i++) { idx = parentOffset + i + j * ndivs + k * product; - this->MarkParents(reinterpret_cast(VTK_CELL_INSIDE), i, j, k, ndivs, this->Level); + this->MarkParents(parentOctant, i, j, k, ndivs, this->Level); octant = this->Tree[idx]; if (!octant) { - octant = vtkIdList::New(); + octant = vtkSmartPointer::New(); octant->Allocate(numCellsPerBucket, numCellsPerBucket / 2); this->Tree[idx] = octant; } @@ -874,7 +857,8 @@ void vtkCellLocator::BuildLocatorInternal() } //------------------------------------------------------------------------------ -void vtkCellLocator::MarkParents(void* a, int i, int j, int k, int ndivs, int level) +void vtkCellLocator::MarkParents( + const vtkSmartPointer& parentOctant, int i, int j, int k, int ndivs, int level) { int offset, prod, ii; vtkIdType parentIdx; @@ -896,12 +880,12 @@ void vtkCellLocator::MarkParents(void* a, int i, int j, int k, int ndivs, int le parentIdx = offset + i + j * ndivs + k * ndivs * ndivs; // if it already matches just return - if (a == this->Tree[parentIdx]) + if (parentOctant == this->Tree[parentIdx]) { return; } - this->Tree[parentIdx] = static_cast(a); + this->Tree[parentIdx] = parentOctant; prod = prod >> 3; offset -= prod; @@ -1187,10 +1171,11 @@ void vtkCellLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) { return; } - if (cells) + if (!cells) { - cells->Reset(); + return; } + cells->Reset(); // Get the locator locations for the two extreme corners of the bounding box double p1[3], p2[3], *p[2]; @@ -1225,10 +1210,7 @@ void vtkCellLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) { for (idx = 0; idx < cellIds->GetNumberOfIds(); idx++) { - if (cells) - { - cells->InsertUniqueId(cellIds->GetId(idx)); - } + cells->InsertUniqueId(cellIds->GetId(idx)); } } } @@ -1446,8 +1428,46 @@ int vtkCellLocator::IntersectWithLine(const double p1[3], const double p2[3], co return 0; } +//------------------------------------------------------------------------------ +void vtkCellLocator::ShallowCopy(vtkAbstractCellLocator* locator) +{ + vtkCellLocator* cellLocator = vtkCellLocator::SafeDownCast(locator); + if (!cellLocator) + { + vtkErrorMacro("Cannot cast " << locator->GetClassName() << " to vtkCellLocator."); + return; + } + // we only copy what's actually used by vtkCellLocator + + // vtkLocator parameters + this->SetDataSet(cellLocator->GetDataSet()); + this->SetUseExistingSearchStructure(cellLocator->GetUseExistingSearchStructure()); + this->SetAutomatic(cellLocator->GetAutomatic()); + this->SetMaxLevel(cellLocator->GetMaxLevel()); + this->Level = cellLocator->Level; + + // vtkAbstractCellLocator parameters + this->SetNumberOfCellsPerNode(cellLocator->GetNumberOfCellsPerNode()); + this->CacheCellBounds = cellLocator->CacheCellBounds; + this->CellBoundsSharedPtr = cellLocator->CellBoundsSharedPtr; // This is important + this->CellBounds = this->CellBoundsSharedPtr.get() ? this->CellBoundsSharedPtr->data() : nullptr; + + // vtkCellLocator parameters + this->NumberOfOctants = cellLocator->NumberOfOctants; + std::copy_n(cellLocator->Bounds, 6, this->Bounds); + std::copy_n(cellLocator->H, 3, this->H); + this->NumberOfDivisions = cellLocator->NumberOfDivisions; + this->TreeSharedPtr = cellLocator->TreeSharedPtr; // This is important + this->Tree = this->TreeSharedPtr.get() ? this->TreeSharedPtr->data() : nullptr; +} + //------------------------------------------------------------------------------ void vtkCellLocator::PrintSelf(ostream& os, vtkIndent indent) { this->Superclass::PrintSelf(os, indent); + os << indent << "NumberOfOctants: " << this->NumberOfOctants << "\n"; + os << indent << "Bounds: " << this->Bounds[0] << " " << this->Bounds[1] << " " << this->Bounds[2] + << " " << this->Bounds[3] << " " << this->Bounds[4] << " " << this->Bounds[5] << "\n"; + os << indent << "H: " << this->H[0] << " " << this->H[1] << " " << this->H[2] << "\n"; + os << indent << "NumberOfDivisions: " << this->NumberOfDivisions << "\n"; } diff --git a/Common/DataModel/vtkCellLocator.h b/Common/DataModel/vtkCellLocator.h index 719f29edcd4b..1fef326d3636 100644 --- a/Common/DataModel/vtkCellLocator.h +++ b/Common/DataModel/vtkCellLocator.h @@ -186,6 +186,11 @@ public: */ virtual int GetNumberOfBuckets(void); + /** + * Shallow copy of a vtkCellLocator. + */ + void ShallowCopy(vtkAbstractCellLocator* locator) override; + protected: vtkCellLocator(); ~vtkCellLocator() override; @@ -222,9 +227,10 @@ protected: double Bounds[6]; // bounding box root octant double H[3]; // width of leaf octant in x-y-z directions int NumberOfDivisions; // number of "leaf" octant sub-divisions - vtkIdList** Tree; // octree + std::shared_ptr>> TreeSharedPtr; + vtkSmartPointer* Tree; // octree - void MarkParents(void*, int, int, int, int, int); + void MarkParents(const vtkSmartPointer&, int, int, int, int, int); int GenerateIndex(int offset, int numDivs, int i, int j, int k, vtkIdType& idx); void GenerateFace( int face, int numDivs, int i, int j, int k, vtkPoints* pts, vtkCellArray* polys); -- GitLab From 24de095a4b4a70632a6b7ff5323dd8f01ee31043 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 11:00:49 -0400 Subject: [PATCH 0144/1015] vtkStaticCellLocator: Implement ShallowCopy --- Common/DataModel/vtkStaticCellLocator.cxx | 167 +++++++++++++++++++--- Common/DataModel/vtkStaticCellLocator.h | 5 + 2 files changed, 151 insertions(+), 21 deletions(-) diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 378ecb54bd7a..0d86b5272734 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -72,7 +72,7 @@ vtkStandardNewMacro(vtkStaticCellLocator); // PIMPLd class which wraps binning functionality. struct vtkCellBinner { - vtkStaticCellLocator* Locator; // locater + vtkStaticCellLocator* Locator; // locator vtkIdType NumCells; // the number of cells to bin vtkIdType NumBins; vtkIdType NumFragments; // total number of (cellId,binId) tuples @@ -81,13 +81,17 @@ struct vtkCellBinner vtkDataSet* DataSet; int Divisions[3]; double Bounds[6]; + std::shared_ptr> CellBoundsSharedPtr; double* CellBounds; + std::shared_ptr> CountsSharedPtr; vtkIdType* Counts; double H[3]; double hX, hY, hZ; double fX, fY, fZ, bX, bY, bZ; vtkIdType xD, yD, zD, xyD; + vtkCellBinner() = default; + // Construction vtkCellBinner(vtkStaticCellLocator* loc, vtkIdType numCells, vtkIdType numBins) { @@ -99,8 +103,11 @@ struct vtkCellBinner loc->GetDivisions(this->Divisions); // Allocate data. Note that these arrays are deleted elsewhere - this->CellBounds = new double[numCells * 6]; - this->Counts = new vtkIdType[numCells + 1]; // one extra holds total count + this->CellBoundsSharedPtr = std::make_shared>(numCells * 6); + this->CellBounds = this->CellBoundsSharedPtr->data(); + this->CountsSharedPtr = + std::make_shared>(numCells + 1); // one extra holds total count + this->Counts = this->CountsSharedPtr->data(); // This is done to cause non-thread safe initialization to occur due to // side effects from GetCellBounds(). @@ -127,8 +134,10 @@ struct vtkCellBinner ~vtkCellBinner() { - delete[] this->CellBounds; - delete[] this->Counts; + this->CellBoundsSharedPtr.reset(); + this->CellBounds = nullptr; + this->CountsSharedPtr.reset(); + this->Counts = nullptr; } void GetBinIndices(const double* x, int ijk[3]) const @@ -249,6 +258,8 @@ struct vtkCellProcessor vtkIdType xD, xyD; size_t MaxCellSize; + vtkCellProcessor() = default; + vtkCellProcessor(vtkCellBinner* cb) : Binner(cb) { @@ -297,24 +308,32 @@ template struct CellProcessor : public vtkCellProcessor { // Type dependent members - CellFragments* Map; // the map to be sorted - T* Offsets; // offsets for each bin into the map + std::shared_ptr>> MapSharedPtr; // SharedPtr of map + CellFragments* Map; // the map to be sorted + std::shared_ptr> OffsetsShardPtr; // SharedPtr of offsets + T* Offsets; // offsets for each bin into the map + + CellProcessor() = default; CellProcessor(vtkCellBinner* cb) : vtkCellProcessor(cb) { // Prepare to sort // one extra to simplify traversal - this->Map = new CellFragments[this->NumFragments + 1]; + this->MapSharedPtr = std::make_shared>>(this->NumFragments + 1); + this->Map = this->MapSharedPtr->data(); this->Map[this->NumFragments].BinId = this->NumBins; - this->Offsets = new T[this->NumBins + 1]; + this->OffsetsShardPtr = std::make_shared>(this->NumBins + 1); + this->Offsets = this->OffsetsShardPtr->data(); this->Offsets[this->NumBins] = this->NumFragments; } ~CellProcessor() override { - delete[] this->Map; - delete[] this->Offsets; + this->MapSharedPtr.reset(); + this->Map = nullptr; + this->OffsetsShardPtr.reset(); + this->Offsets = nullptr; } // The number of cell ids in a bin is determined by computing the @@ -496,7 +515,7 @@ vtkIdType CellProcessor::FindCell( { const CellFragments* cellIds = this->GetIds(binId); double dist2; - vtkIdType cellId; + T cellId; for (T j = 0; j < numIds; j++) { @@ -525,6 +544,11 @@ void CellProcessor::FindCellsWithinBounds(double* bbox, vtkIdList* cells) double pMin[3], pMax[3]; const CellFragments* ids; + // Initialize the list of cells + if (!cells) + { + return; + } cells->Reset(); // Get the locator locations for the two extreme corners of the bounding box @@ -928,18 +952,16 @@ void CellProcessor::FindCellsAlongPlane( const double o[3], const double n[3], double vtkNotUsed(tol), vtkIdList* cells) { // Initialize the list of cells + if (!cells) + { + return; + } cells->Reset(); // Make sure that the bounding box of the locator is intersected. double* bounds = this->Binner->Bounds; - double origin[3]; - origin[0] = o[0]; - origin[1] = o[1]; - origin[2] = o[2]; - double normal[3]; - normal[0] = n[0]; - normal[1] = n[1]; - normal[2] = n[2]; + double origin[3] = { o[0], o[1], o[2] }; + double normal[3] = { n[0], n[1], n[2] }; if (vtkBox::IntersectWithPlane(bounds, origin, normal) == 0) { return; @@ -947,7 +969,7 @@ void CellProcessor::FindCellsAlongPlane( // Okay now evaluate which bins intersect the plane, and then the cells in // the bins. We do this in parallel and mark the cells. Later the marked - // cells will be added (in serial) to the output list. cellHasBeenVisited + // cells will be added (serially) to the output list. cellHasBeenVisited // has three states: 0(not visited), 1(visited but not intersecting), // 2(visited and potential intersection candidate). std::vector cellHasBeenVisited(this->NumCells, 0); @@ -1686,6 +1708,109 @@ void vtkStaticCellLocator::GenerateRepresentation(int vtkNotUsed(level), vtkPoly } // z } +//------------------------------------------------------------------------------ +void vtkStaticCellLocator::ShallowCopy(vtkAbstractCellLocator* locator) +{ + vtkStaticCellLocator* cellLocator = vtkStaticCellLocator::SafeDownCast(locator); + if (!cellLocator) + { + vtkErrorMacro("Cannot cast " << locator->GetClassName() << " to vtkStaticCellLocator."); + return; + } + // we only copy what's actually used by vtkStaticCellLocator + + // vtkLocator parameters + this->SetDataSet(cellLocator->GetDataSet()); + this->SetUseExistingSearchStructure(cellLocator->GetUseExistingSearchStructure()); + this->SetAutomatic(cellLocator->GetAutomatic()); + + // vtkAbstractCellLocator parameters + this->SetNumberOfCellsPerNode(cellLocator->GetNumberOfCellsPerNode()); + + // vtkStaticCellLocator parameters + std::copy_n(cellLocator->Bounds, 6, this->Bounds); + std::copy_n(cellLocator->Divisions, 3, this->Divisions); + std::copy_n(cellLocator->H, 3, this->H); + this->SetMaxNumberOfBuckets(cellLocator->GetMaxNumberOfBuckets()); + this->LargeIds = cellLocator->LargeIds; + // copy binner + this->Binner = new vtkCellBinner(); + this->Binner->Locator = this; // this should be different + this->Binner->NumCells = cellLocator->Binner->NumCells; + this->Binner->NumBins = cellLocator->Binner->NumBins; + this->Binner->NumFragments = cellLocator->Binner->NumFragments; + this->Binner->DataSet = this->DataSet; // this should be different + std::copy_n(cellLocator->Binner->Divisions, 3, this->Binner->Divisions); + std::copy_n(cellLocator->Binner->Bounds, 6, this->Binner->Bounds); + this->Binner->CellBoundsSharedPtr = cellLocator->Binner->CellBoundsSharedPtr; // this is important + this->Binner->CellBounds = + this->Binner->CellBoundsSharedPtr.get() ? this->Binner->CellBoundsSharedPtr->data() : nullptr; + this->Binner->CountsSharedPtr = cellLocator->Binner->CountsSharedPtr; // this is important + this->Binner->Counts = + this->Binner->CountsSharedPtr.get() ? this->Binner->CountsSharedPtr->data() : nullptr; + std::copy_n(cellLocator->Binner->H, 3, this->Binner->H); + this->Binner->hX = cellLocator->Binner->hX; + this->Binner->hY = cellLocator->Binner->hY; + this->Binner->hZ = cellLocator->Binner->hZ; + this->Binner->fX = cellLocator->Binner->fX; + this->Binner->fY = cellLocator->Binner->fY; + this->Binner->fZ = cellLocator->Binner->fZ; + this->Binner->bX = cellLocator->Binner->bX; + this->Binner->bY = cellLocator->Binner->bY; + this->Binner->bZ = cellLocator->Binner->bZ; + this->Binner->xD = cellLocator->Binner->xD; + this->Binner->yD = cellLocator->Binner->yD; + this->Binner->zD = cellLocator->Binner->zD; + this->Binner->xyD = cellLocator->Binner->xyD; + // copy processor + if (this->LargeIds) + { + auto cellLocatorProcessor = static_cast*>(cellLocator->Processor); + CellProcessor* processor = new CellProcessor(); + processor->Binner = this->Binner; + processor->DataSet = this->DataSet; + processor->Bounds = this->Binner->Bounds; + processor->CellBounds = this->Binner->CellBounds; + processor->Counts = this->Binner->Counts; + processor->NumCells = this->Binner->NumCells; + processor->NumBins = this->Binner->NumBins; + processor->BatchSize = cellLocatorProcessor->BatchSize; + processor->NumBatches = cellLocatorProcessor->NumBatches; + processor->xD = this->Binner->xD; + processor->xyD = this->Binner->xyD; + processor->MaxCellSize = cellLocatorProcessor->MaxCellSize; + processor->MapSharedPtr = cellLocatorProcessor->MapSharedPtr; // this is important + processor->Map = processor->MapSharedPtr.get() ? processor->MapSharedPtr->data() : nullptr; + processor->OffsetsShardPtr = cellLocatorProcessor->OffsetsShardPtr; // this is important + processor->Offsets = + processor->OffsetsShardPtr.get() ? processor->OffsetsShardPtr->data() : nullptr; + this->Processor = processor; + } + else + { + auto cellLocatorProcessor = static_cast*>(cellLocator->Processor); + CellProcessor* processor = new CellProcessor(); + processor->Binner = this->Binner; + processor->DataSet = this->DataSet; + processor->Bounds = this->Binner->Bounds; + processor->CellBounds = this->Binner->CellBounds; + processor->Counts = this->Binner->Counts; + processor->NumCells = this->Binner->NumCells; + processor->NumBins = this->Binner->NumBins; + processor->BatchSize = cellLocatorProcessor->BatchSize; + processor->NumBatches = cellLocatorProcessor->NumBatches; + processor->xD = this->Binner->xD; + processor->xyD = this->Binner->xyD; + processor->MaxCellSize = cellLocatorProcessor->MaxCellSize; + processor->MapSharedPtr = cellLocatorProcessor->MapSharedPtr; // this is important + processor->Map = processor->MapSharedPtr.get() ? processor->MapSharedPtr->data() : nullptr; + processor->OffsetsShardPtr = cellLocatorProcessor->OffsetsShardPtr; // this is important + processor->Offsets = + processor->OffsetsShardPtr.get() ? processor->OffsetsShardPtr->data() : nullptr; + this->Processor = processor; + } +} + //------------------------------------------------------------------------------ void vtkStaticCellLocator::PrintSelf(ostream& os, vtkIndent indent) { diff --git a/Common/DataModel/vtkStaticCellLocator.h b/Common/DataModel/vtkStaticCellLocator.h index f47c7d359e48..b89b67f40ad5 100644 --- a/Common/DataModel/vtkStaticCellLocator.h +++ b/Common/DataModel/vtkStaticCellLocator.h @@ -257,6 +257,11 @@ public: void ForceBuildLocator() override; ///@} + /** + * Shallow copy of a vtkStaticCellLocator. + */ + void ShallowCopy(vtkAbstractCellLocator* locator) override; + protected: vtkStaticCellLocator(); ~vtkStaticCellLocator() override; -- GitLab From 25efa79f94be2e06ff6075bf34df39547726d340 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 11:03:34 -0400 Subject: [PATCH 0145/1015] vtkCellTreeLocator: Implement ShallowCopy --- Common/DataModel/vtkCellTreeLocator.cxx | 36 +++++++++++++++++++++---- Common/DataModel/vtkCellTreeLocator.h | 13 ++++++--- 2 files changed, 40 insertions(+), 9 deletions(-) diff --git a/Common/DataModel/vtkCellTreeLocator.cxx b/Common/DataModel/vtkCellTreeLocator.cxx index 9b294458cf5e..2ad5e96f62c9 100644 --- a/Common/DataModel/vtkCellTreeLocator.cxx +++ b/Common/DataModel/vtkCellTreeLocator.cxx @@ -546,12 +546,13 @@ vtkCellTreeLocator::~vtkCellTreeLocator() void vtkCellTreeLocator::BuildLocator() { // don't rebuild if build time is newer than modified and dataset modified time - if (this->Tree && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) + if (this->Tree.get() && this->BuildTime > this->MTime && + this->BuildTime > this->DataSet->GetMTime()) { return; } // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists - if (this->Tree && this->UseExistingSearchStructure) + if (this->Tree.get() && this->UseExistingSearchStructure) { this->BuildTime.Modified(); vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); @@ -580,7 +581,7 @@ void vtkCellTreeLocator::BuildLocatorInternal() this->FreeCellBounds(); this->StoreCellBounds(); } - this->Tree = new vtkCellTree; + this->Tree = std::make_shared(); vtkCellTreeBuilder builder; builder.m_leafsize = this->NumberOfCellsPerNode; builder.m_buckets = this->NumberOfBuckets; @@ -1054,8 +1055,7 @@ void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], d //------------------------------------------------------------------------------ void vtkCellTreeLocator::FreeSearchStructure() { - delete this->Tree; - this->Tree = nullptr; + this->Tree.reset(); } //------------------------------------------------------------------------------ @@ -1278,6 +1278,32 @@ void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) } } +//------------------------------------------------------------------------------ +void vtkCellTreeLocator::ShallowCopy(vtkAbstractCellLocator* locator) +{ + vtkCellTreeLocator* cellLocator = vtkCellTreeLocator::SafeDownCast(locator); + if (!cellLocator) + { + vtkErrorMacro("Cannot cast " << locator->GetClassName() << " to vtkCellTreeLocator."); + return; + } + // we only copy what's actually used by vtkCellTreeLocator + + // vtkLocator parameters + this->SetDataSet(cellLocator->GetDataSet()); + this->SetUseExistingSearchStructure(cellLocator->GetUseExistingSearchStructure()); + + // vtkAbstractCellLocator parameters + this->SetNumberOfCellsPerNode(cellLocator->GetNumberOfCellsPerNode()); + this->CacheCellBounds = cellLocator->CacheCellBounds; + this->CellBoundsSharedPtr = cellLocator->CellBoundsSharedPtr; // This is important + this->CellBounds = this->CellBoundsSharedPtr.get() ? this->CellBoundsSharedPtr->data() : nullptr; + + // vtkCellTreeLocator parameters + this->NumberOfBuckets = cellLocator->NumberOfBuckets; + this->Tree = cellLocator->Tree; +} + //------------------------------------------------------------------------------ void vtkCellTreeLocator::PrintSelf(ostream& os, vtkIndent indent) { diff --git a/Common/DataModel/vtkCellTreeLocator.h b/Common/DataModel/vtkCellTreeLocator.h index bdf228c28d73..67132065616e 100644 --- a/Common/DataModel/vtkCellTreeLocator.h +++ b/Common/DataModel/vtkCellTreeLocator.h @@ -50,7 +50,8 @@ #include "vtkAbstractCellLocator.h" #include "vtkCommonDataModelModule.h" // For export macro #include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 -#include // Needed for internal class + +#include // Needed for internal class class vtkCellPointTraversal; class vtkIdTypeArray; @@ -107,8 +108,7 @@ public: /** * Return a list of unique cell ids inside of a given bounding box. The - * user must provide the vtkIdList to populate. This method returns data - * only after the locator has been built. + * user must provide the vtkIdList to populate. */ void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; @@ -205,6 +205,11 @@ public: vtkIdType Size() const; }; + /** + * Shallow copy of a vtkCellTreeLocator. + */ + void ShallowCopy(vtkAbstractCellLocator* locator) override; + protected: vtkCellTreeLocator(); ~vtkCellTreeLocator() override; @@ -219,7 +224,7 @@ protected: int NumberOfBuckets; - vtkCellTree* Tree; + std::shared_ptr Tree; friend class vtkCellPointTraversal; friend class vtkCellTreeNode; -- GitLab From a8e2a427db9eb928ca9bbf1446739b2662f0e798 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 11:06:44 -0400 Subject: [PATCH 0146/1015] vtkModifiedBSPTree: Implement ShallowCopy --- Filters/FlowPaths/vtkModifiedBSPTree.cxx | 90 ++++++++++++------------ Filters/FlowPaths/vtkModifiedBSPTree.h | 7 +- 2 files changed, 52 insertions(+), 45 deletions(-) diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.cxx b/Filters/FlowPaths/vtkModifiedBSPTree.cxx index 159b6fd649b8..3b6910221e51 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.cxx +++ b/Filters/FlowPaths/vtkModifiedBSPTree.cxx @@ -66,13 +66,9 @@ vtkModifiedBSPTree::~vtkModifiedBSPTree() //------------------------------------------------------------------------------ void vtkModifiedBSPTree::FreeSearchStructure() { - if (this->mRoot) - { - delete this->mRoot; - this->mRoot = nullptr; - this->Level = 0; - this->npn = this->nln = this->tot_depth = 0; - } + this->mRoot.reset(); + this->Level = 0; + this->npn = this->nln = this->tot_depth = 0; } ////////////////////////////////////////////////////////////////////////////// @@ -116,44 +112,17 @@ public: } }; -extern "C" int CompareMin(const void* pA, const void* B) -{ - const cell_extents* tA = static_cast(pA); - const cell_extents* tB = static_cast(B); - if (tA->min == tB->min) - { - return 0; - } - else - { - return tA->min < tB->min ? -1 : 1; - } -} - -extern "C" int CompareMax(const void* pA, const void* B) -{ - const cell_extents* tA = static_cast(pA); - const cell_extents* tB = static_cast(B); - if (tA->max == tB->max) - { - return 0; - } - else - { - return tA->max > tB->max ? -1 : 1; - } -} - //------------------------------------------------------------------------------ void vtkModifiedBSPTree::BuildLocator() { // don't rebuild if build time is newer than modified and dataset modified time - if (this->mRoot && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) + if (this->mRoot.get() && this->BuildTime > this->MTime && + this->BuildTime > this->DataSet->GetMTime()) { return; } // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists - if (this->mRoot && this->UseExistingSearchStructure) + if (this->mRoot.get() && this->UseExistingSearchStructure) { this->BuildTime.Modified(); vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); @@ -183,7 +152,7 @@ void vtkModifiedBSPTree::BuildLocatorInternal() this->FreeSearchStructure(); // create the root node - this->mRoot = new BSPNode(); + this->mRoot = std::make_shared(); this->mRoot->mAxis = rand() % 3; this->mRoot->depth = 0; @@ -223,7 +192,7 @@ void vtkModifiedBSPTree::BuildLocatorInternal() // call the recursive subdivision routine vtkDebugMacro(<< "Beginning Subdivision"); - Subdivide(this->mRoot, lists, this->DataSet, numCells, 0, this->MaxLevel, + Subdivide(this->mRoot.get(), lists, this->DataSet, numCells, 0, this->MaxLevel, this->NumberOfCellsPerNode, this->Level); delete lists; @@ -538,7 +507,7 @@ void vtkModifiedBSPTree::GenerateRepresentation(int level, vtkPolyData* pd) nodestack ns; boxlist bl; BSPNode* node; - ns.push(this->mRoot); + ns.push(this->mRoot.get()); // lets walk the tree and get all the level n node boxes while (!ns.empty()) { @@ -691,7 +660,7 @@ int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3] break; } // OK, lets walk the tree and find intersections - ns.push(this->mRoot); + ns.push(this->mRoot.get()); while (!ns.empty()) { node = ns.top(); @@ -857,7 +826,7 @@ int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3] // we will sort intersections by t, so keep track using these lists std::vector cellIntersections; // OK, lets walk the tree and find intersections - ns.push(this->mRoot); + ns.push(this->mRoot.get()); while (!ns.empty()) { node = ns.top(); @@ -983,7 +952,7 @@ vtkIdType vtkModifiedBSPTree::FindCell( vtkIdType cellId; nodestack ns; BSPNode* node; - ns.push(this->mRoot); + ns.push(this->mRoot.get()); double closestPoint[3], dist2; // while (!ns.empty()) @@ -1035,7 +1004,7 @@ vtkIdListCollection* vtkModifiedBSPTree::GetLeafNodeCellInformation() vtkIdListCollection* LeafCellsList = vtkIdListCollection::New(); nodestack ns; BSPNode* node = nullptr; - ns.push(this->mRoot); + ns.push(this->mRoot.get()); // while (!ns.empty()) { @@ -1067,10 +1036,43 @@ vtkIdListCollection* vtkModifiedBSPTree::GetLeafNodeCellInformation() return LeafCellsList; } +//------------------------------------------------------------------------------ +void vtkModifiedBSPTree::ShallowCopy(vtkAbstractCellLocator* locator) +{ + vtkModifiedBSPTree* cellLocator = vtkModifiedBSPTree::SafeDownCast(locator); + if (!cellLocator) + { + vtkErrorMacro("Cannot cast " << locator->GetClassName() << " to vtkModifiedBSPTree."); + return; + } + // we only copy what's actually used by vtkModifiedBSPTree + + // vtkLocator parameters + this->SetDataSet(cellLocator->GetDataSet()); + this->SetUseExistingSearchStructure(cellLocator->GetUseExistingSearchStructure()); + this->SetMaxLevel(cellLocator->GetMaxLevel()); + this->Level = cellLocator->Level; + + // vtkAbstractCellLocator parameters + this->SetNumberOfCellsPerNode(cellLocator->GetNumberOfCellsPerNode()); + this->CacheCellBounds = cellLocator->CacheCellBounds; + this->CellBoundsSharedPtr = cellLocator->CellBoundsSharedPtr; // This is important + this->CellBounds = this->CellBoundsSharedPtr.get() ? this->CellBoundsSharedPtr->data() : nullptr; + + // vtkCellTreeLocator parameters + this->mRoot = cellLocator->mRoot; // This is important + this->npn = cellLocator->npn; + this->nln = cellLocator->nln; + this->tot_depth = cellLocator->tot_depth; +} + //------------------------------------------------------------------------------ void vtkModifiedBSPTree::PrintSelf(ostream& os, vtkIndent indent) { this->Superclass::PrintSelf(os, indent); + os << indent << "npn: " << this->npn << "\n"; + os << indent << "nln: " << this->nln << "\n"; + os << indent << "tot_depth: " << this->tot_depth << "\n"; } ////////////////////////////////////////////////////////////////////////////// diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.h b/Filters/FlowPaths/vtkModifiedBSPTree.h index 28c8c35edb46..780265ad8215 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.h +++ b/Filters/FlowPaths/vtkModifiedBSPTree.h @@ -257,12 +257,17 @@ public: void ForceBuildLocator() override; ///@} + /** + * Shallow copy of a vtkModifiedBSPTree. + */ + void ShallowCopy(vtkAbstractCellLocator* locator) override; + protected: vtkModifiedBSPTree(); ~vtkModifiedBSPTree() override; void BuildLocatorInternal() override; - BSPNode* mRoot; // bounding box root node + std::shared_ptr mRoot; // bounding box root node int npn; int nln; int tot_depth; -- GitLab From df5b1678845086181808d7d0ce387405ed231858 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 11:44:53 -0400 Subject: [PATCH 0147/1015] vtkLinearTransformCellLocator: Implementation Cell locator adaptor to perform cell Location on datasets that are a linear transformation of the original dataset --- Common/DataModel/CMakeLists.txt | 1 + Common/DataModel/vtk.module | 2 + .../vtkLinearTransformCellLocator.cxx | 539 ++++++++++++++++++ .../DataModel/vtkLinearTransformCellLocator.h | 221 +++++++ Common/Transforms/vtkAbstractTransform.cxx | 2 +- 5 files changed, 764 insertions(+), 1 deletion(-) create mode 100644 Common/DataModel/vtkLinearTransformCellLocator.cxx create mode 100644 Common/DataModel/vtkLinearTransformCellLocator.h diff --git a/Common/DataModel/CMakeLists.txt b/Common/DataModel/CMakeLists.txt index 3ccf3084f08c..11ecc1fec06e 100644 --- a/Common/DataModel/CMakeLists.txt +++ b/Common/DataModel/CMakeLists.txt @@ -138,6 +138,7 @@ set(classes vtkLagrangeTriangle vtkLagrangeWedge vtkLine + vtkLinearTransformCellLocator vtkLocator vtkMarchingCubesTriangleCases vtkMarchingSquaresLineCases diff --git a/Common/DataModel/vtk.module b/Common/DataModel/vtk.module index d14662b28aab..7b263bd9524e 100644 --- a/Common/DataModel/vtk.module +++ b/Common/DataModel/vtk.module @@ -15,6 +15,7 @@ DEPENDS PRIVATE_DEPENDS VTK::CommonMisc VTK::CommonSystem + VTK::eigen VTK::pugixml VTK::vtksys TEST_DEPENDS @@ -23,6 +24,7 @@ TEST_DEPENDS VTK::CommonExecutionModel VTK::CommonSystem VTK::FiltersExtraction + VTK::FiltersFlowPaths VTK::FiltersGeneric VTK::FiltersGeometry VTK::FiltersModeling diff --git a/Common/DataModel/vtkLinearTransformCellLocator.cxx b/Common/DataModel/vtkLinearTransformCellLocator.cxx new file mode 100644 index 000000000000..f40c2c4c4cde --- /dev/null +++ b/Common/DataModel/vtkLinearTransformCellLocator.cxx @@ -0,0 +1,539 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkLinearTransformCellLocator.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +#include "vtkLinearTransformCellLocator.h" + +#include "vtkArrayDispatch.h" +#include "vtkDataArrayRange.h" +#include "vtkDataSet.h" +#include "vtkDoubleArray.h" +#include "vtkFloatArray.h" +#include "vtkGenericCell.h" +#include "vtkIdList.h" +#include "vtkImageData.h" +#include "vtkMath.h" +#include "vtkObjectFactory.h" +#include "vtkPointSet.h" +#include "vtkPoints.h" +#include "vtkPolyData.h" +#include "vtkRectilinearGrid.h" +#include "vtkSMPTools.h" +#include "vtkTransform.h" + +#include "vtk_eigen.h" +#include VTK_EIGEN(Geometry) + +static constexpr vtkIdType VTK_MAX_SAMPLE_POINTS = 100; + +//------------------------------------------------------------------------------ +vtkStandardNewMacro(vtkLinearTransformCellLocator); + +//------------------------------------------------------------------------------ +vtkCxxSetObjectMacro(vtkLinearTransformCellLocator, CellLocator, vtkAbstractCellLocator); + +//------------------------------------------------------------------------------ +vtkLinearTransformCellLocator::vtkLinearTransformCellLocator() +{ + this->CellLocator = nullptr; + this->Transform = vtkSmartPointer::New(); + this->InverseTransform = vtkSmartPointer::New(); +} + +//------------------------------------------------------------------------------ +vtkLinearTransformCellLocator::~vtkLinearTransformCellLocator() +{ + this->SetCellLocator(nullptr); +} + +//------------------------------------------------------------------------------ +void vtkLinearTransformCellLocator::PrintSelf(ostream& os, vtkIndent indent) +{ + this->Superclass::PrintSelf(os, indent); + if (this->CellLocator) + { + os << indent << "CellLocator: " << this->CellLocator << "\n"; + } + else + { + os << indent << "CellLocator: (none)\n"; + } + os << indent << "Transform: " << this->Transform << "\n"; + os << indent << "InverseTransform: " << this->InverseTransform << "\n"; + os << indent << "IsLinearTransformation: " << this->IsLinearTransformation << "\n"; + os << indent << "UseAllPoints: " << this->UseAllPoints << "\n"; +} + +//------------------------------------------------------------------------------ +static vtkSmartPointer GetPoints(vtkDataSet* ds) +{ + vtkSmartPointer points; + if (auto pointSet = vtkPointSet::SafeDownCast(ds)) + { + points = pointSet->GetPoints(); + } + else if (auto imageData = vtkImageData::SafeDownCast(ds)) + { + points = vtkSmartPointer::New(); + points->SetDataTypeToDouble(); + points->SetNumberOfPoints(imageData->GetNumberOfPoints()); + vtkSMPTools::For(0, imageData->GetNumberOfPoints(), [&](vtkIdType begin, vtkIdType end) { + double point[3]; + for (vtkIdType i = begin; i < end; ++i) + { + imageData->GetPoint(i, point); + points->SetPoint(i, point); + } + }); + } + else if (auto recGrid = vtkRectilinearGrid::SafeDownCast(ds)) + { + points = vtkSmartPointer::New(); + recGrid->GetPoints(points); + } + else + { + vtkGenericWarningMacro(<< "Unsupported dataset type: " << ds->GetClassName()); + } + return points; +} + +//------------------------------------------------------------------------------ +struct ComputeTransformationWorker +{ + Eigen::Matrix3d RotationMatrix; + Eigen::Vector3d TranslationVector; + + template + void FastTransformComputation( + PointsArray* points1, PointsArray* points2, bool& validTransformation) + { + using ValueType = typename PointsArray::ValueType; + using MatrixX = Eigen::Matrix; + using Matrix3 = Eigen::Matrix; + using Vector3 = Eigen::Matrix; + auto p1 = Eigen::Map(points1->GetPointer(0), 3, (points1)->GetNumberOfTuples()); + auto p2 = Eigen::Map(points2->GetPointer(0), 3, (points2)->GetNumberOfTuples()); + // find the rotation and translation matrix between 2 sets of points + Vector3 p1BaryCenter = p1.rowwise().mean(); + Vector3 p2BaryCenter = p2.rowwise().mean(); + auto centeredP1 = p1.colwise() - p1BaryCenter; + auto centeredP2 = p2.colwise() - p2BaryCenter; + auto covarianceMatrix = centeredP2 * centeredP1.transpose(); + Eigen::JacobiSVD svd(covarianceMatrix, Eigen::ComputeFullV | Eigen::ComputeFullU); + // both matrices are 3x3 + auto matrixV = svd.matrixV(); + auto& matrixU = svd.matrixU(); + Matrix3 rotationMatrix = matrixV * matrixU.transpose(); + // there is reflection + if (rotationMatrix.determinant() < 0) + { + matrixV.col(2) *= -1; + rotationMatrix = matrixV * matrixU.transpose(); + } + Vector3 translationVector = -rotationMatrix * p2BaryCenter + p1BaryCenter; + // calculate the root mean squared error between the actual p1 and replicated p2 + auto rotatedP2 = (rotationMatrix * p2).colwise() + translationVector; + auto errorMatrix = rotatedP2 - p1; + double rootMeanSquaredError = std::sqrt(errorMatrix.array().square().sum() / p1.cols()); + // check if p2 is a linear transformation of p1 + if (rootMeanSquaredError <= 0.001) + { + validTransformation = true; + this->RotationMatrix = rotationMatrix.template cast(); + this->TranslationVector = translationVector.template cast(); + ; + } + else + { + validTransformation = false; + vtkGenericWarningMacro( + "Points are not close enough to be considered a linear transformation. " + << rootMeanSquaredError); + } + } + + template + void operator()(PointsArray1* points1, PointsArray2* points2, bool& validTransformation) + { + auto p1Range = vtk::DataArrayTupleRange<3>(points1); + auto p2Range = vtk::DataArrayTupleRange<3>(points2); + Eigen::MatrixXd p1, p2; + p1.resize(3, p1Range.size()); + p2.resize(3, p2Range.size()); + vtkSMPTools::For(0, p1Range.size(), [&](vtkIdType begin, vtkIdType end) { + for (vtkIdType i = begin; i < end; i++) + { + p1(0, i) = p1Range[i][0]; + p1(1, i) = p1Range[i][1]; + p1(2, i) = p1Range[i][2]; + p2(0, i) = p2Range[i][0]; + p2(1, i) = p2Range[i][1]; + p2(2, i) = p2Range[i][2]; + } + }); + + // find the rotation and translation matrix between 2 sets of points + Eigen::Vector3d p1BaryCenter = p1.rowwise().mean(); + Eigen::Vector3d p2BaryCenter = p2.rowwise().mean(); + auto centeredP1 = p1.colwise() - p1BaryCenter; + auto centeredP2 = p2.colwise() - p2BaryCenter; + auto covarianceMatrix = centeredP2 * centeredP1.transpose(); + Eigen::JacobiSVD svd( + covarianceMatrix, Eigen::ComputeFullV | Eigen::ComputeFullU); + // both matrices are 3x3 + auto matrixV = svd.matrixV(); + auto& matrixU = svd.matrixU(); + Eigen::Matrix3d rotationMatrix = matrixV * matrixU.transpose(); + // there is reflection + if (rotationMatrix.determinant() < 0) + { + matrixV.col(2) *= -1; + rotationMatrix = matrixV * matrixU.transpose(); + } + Eigen::Vector3d translationVector = -rotationMatrix * p2BaryCenter + p1BaryCenter; + // calculate the root mean squared error between the actual p1 and replicated p2 + auto rotatedP2 = (rotationMatrix * p2).colwise() + translationVector; + auto errorMatrix = rotatedP2 - p1; + double rootMeanSquaredError = std::sqrt(errorMatrix.array().square().sum() / p1.cols()); + // check if p2 is a linear transformation of p1 + if (rootMeanSquaredError <= 0.001) + { + validTransformation = true; + this->RotationMatrix = rotationMatrix; + this->TranslationVector = translationVector; + } + else + { + validTransformation = false; + vtkGenericWarningMacro( + "Points are not close enough to be considered a linear transformation. " + << rootMeanSquaredError); + } + } + + void DefineTransform(vtkTransform* transform, vtkTransform* inverseTransform) + { + auto transposeRotationMatrix = this->RotationMatrix.transpose(); + double matrix[4][4]; + vtkMatrix4x4::Identity(*matrix); + for (uint8_t i = 0; i < 3; ++i) + { + for (uint8_t j = 0; j < 3; ++j) + { + matrix[i][j] = transposeRotationMatrix(i, j); + } + } + transform->SetMatrix(*matrix); + auto negativeTranslationVector = -this->TranslationVector; + transform->Translate( + negativeTranslationVector[0], negativeTranslationVector[1], negativeTranslationVector[2]); + transform->Update(); + vtkMatrix4x4::Invert(transform->GetMatrix()->GetData(), *matrix); + inverseTransform->SetMatrix(*matrix); + inverseTransform->Update(); + } +}; + +//------------------------------------------------------------------------------ +bool vtkLinearTransformCellLocator::ComputeTransformation() +{ + if (this->DataSet == nullptr || this->CellLocator->GetDataSet() == nullptr) + { + vtkErrorMacro("DataSet or CellLocator's DataSet is not set."); + return false; + } + vtkIdType initialNumberOfPoints = this->CellLocator->GetDataSet()->GetNumberOfPoints(); + vtkIdType newNumberOfPoints = this->DataSet->GetNumberOfPoints(); + if (newNumberOfPoints != initialNumberOfPoints) + { + vtkErrorMacro("Number of points in the dataset and the cell locator's dataset do not match."); + return false; + } + if (initialNumberOfPoints < 2) + { + vtkErrorMacro("Number of points in the dataset is less than 2."); + return false; + } + auto initialPoints = GetPoints(this->CellLocator->GetDataSet()); + auto newPoints = GetPoints(this->DataSet); + vtkSmartPointer initialPointsSample, newPointsSample; + vtkDataArray* initialPointsSampleData; + vtkDataArray* newPointsSampleData; + if (VTK_MAX_SAMPLE_POINTS >= initialNumberOfPoints || this->UseAllPoints) + { + initialPointsSampleData = initialPoints->GetData(); + newPointsSampleData = newPoints->GetData(); + } + else + { + // sample points with a stride + vtkIdType stride = initialNumberOfPoints / VTK_MAX_SAMPLE_POINTS; + vtkIdType samplePoints = initialNumberOfPoints / stride; + initialPointsSample = vtkSmartPointer::New(); + newPointsSample = vtkSmartPointer::New(); + initialPointsSample->SetDataType(initialPoints->GetDataType()); + newPointsSample->SetDataType(newPoints->GetDataType()); + initialPointsSample->SetNumberOfPoints(samplePoints); + newPointsSample->SetNumberOfPoints(samplePoints); + double point[3], point2[3]; + for (vtkIdType i = 0; i < samplePoints; ++i) + { + initialPoints->GetPoint(i * stride, point); + initialPointsSample->SetPoint(i, point); + newPoints->GetPoint(i * stride, point2); + newPointsSample->SetPoint(i, point2); + } + initialPointsSampleData = initialPointsSample->GetData(); + newPointsSampleData = newPointsSample->GetData(); + } + bool validTransformation = false; + ComputeTransformationWorker worker; + // first try to use the fast version which does not copy the points + if (vtkDoubleArray::SafeDownCast(initialPointsSampleData) && + vtkDoubleArray::SafeDownCast(newPointsSampleData)) + { + auto initialPointsDataDouble = vtkDoubleArray::SafeDownCast(initialPointsSampleData); + auto newPointsDataDouble = vtkDoubleArray::SafeDownCast(newPointsSampleData); + worker.FastTransformComputation( + initialPointsDataDouble, newPointsDataDouble, validTransformation); + } + else if (vtkFloatArray::SafeDownCast(initialPointsSampleData) && + vtkFloatArray::SafeDownCast(newPointsSampleData)) + { + auto initialPointsDataFloat = vtkFloatArray::SafeDownCast(initialPointsSampleData); + auto newPointsDataFloat = vtkFloatArray::SafeDownCast(newPointsSampleData); + worker.FastTransformComputation( + initialPointsDataFloat, newPointsDataFloat, validTransformation); + } + else + { + using Dispatcher = vtkArrayDispatch::Dispatch2BySameValueType; + if (!Dispatcher::Execute( + initialPointsSampleData, newPointsSampleData, worker, validTransformation)) + { + worker(initialPointsSampleData, newPointsSampleData, validTransformation); + } + } + if (validTransformation) + { + worker.DefineTransform(this->Transform, this->InverseTransform); + } + return validTransformation; +} + +//------------------------------------------------------------------------------ +void vtkLinearTransformCellLocator::GenerateRepresentation(int level, vtkPolyData* pd) +{ + this->BuildLocator(); + if (this->CellLocator) + { + this->CellLocator->GenerateRepresentation(level, pd); + this->Transform->TransformPoints(pd->GetPoints(), pd->GetPoints()); + pd->GetPoints()->Modified(); + pd->Modified(); + } +} + +//------------------------------------------------------------------------------ +void vtkLinearTransformCellLocator::FreeSearchStructure() {} + +//------------------------------------------------------------------------------ +void vtkLinearTransformCellLocator::BuildLocator() +{ + // don't rebuild if build time is newer than modified and dataset modified time + if (this->IsLinearTransformation && this->BuildTime > this->MTime && + this->BuildTime > this->DataSet->GetMTime()) + { + return; + } + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkLinearTransformCellLocator::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkLinearTransformCellLocator::BuildLocatorInternal() +{ + if (!this->CellLocator) + { + vtkErrorMacro("Cell Locator not set"); + return; + } + this->IsLinearTransformation = this->ComputeTransformation(); + this->BuildTime.Modified(); +} + +//------------------------------------------------------------------------------ +void vtkLinearTransformCellLocator::ShallowCopy(vtkAbstractCellLocator* locator) +{ + auto cellLocator = vtkLinearTransformCellLocator::SafeDownCast(locator); + if (!cellLocator) + { + vtkErrorMacro("Cannot cast " << locator->GetClassName() << " to " << this->GetClassName()); + } + // we only copy what's actually used by vtkLinearTransformCellLocator + this->SetDataSet(cellLocator->GetDataSet()); + this->SetCellLocator(cellLocator->GetCellLocator()); + this->Transform = cellLocator->Transform; + this->InverseTransform = cellLocator->InverseTransform; + this->IsLinearTransformation = cellLocator->IsLinearTransformation; + this->UseAllPoints = cellLocator->UseAllPoints; +} + +//------------------------------------------------------------------------------ +int vtkLinearTransformCellLocator::IntersectWithLine(const double p1[3], const double p2[3], + double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, + vtkGenericCell* cell) +{ + if (!this->CellLocator) + { + return 0; + } + this->BuildLocator(); + double p1Transform[3], p2Transform[3]; + this->InverseTransform->InternalTransformPoint(p1, p1Transform); + this->InverseTransform->InternalTransformPoint(p2, p2Transform); + int result = this->CellLocator->IntersectWithLine( + p1Transform, p2Transform, tol, t, x, pcoords, subId, cellId, cell); + if (cellId != -1) + { + double point[3]; + for (vtkIdType i = 0, max = cell->GetNumberOfPoints(); i < max; ++i) + { + auto pointId = cell->PointIds->GetId(i); + this->DataSet->GetPoint(pointId, point); + cell->Points->SetPoint(i, point); + } + this->Transform->InternalTransformPoint(x, x); + } + return result; +} + +//------------------------------------------------------------------------------ +int vtkLinearTransformCellLocator::IntersectWithLine(const double p1[3], const double p2[3], + const double tol, vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) +{ + if (!this->CellLocator) + { + return 0; + } + this->BuildLocator(); + double p1Transform[3], p2Transform[3]; + this->InverseTransform->InternalTransformPoint(p1, p1Transform); + this->InverseTransform->InternalTransformPoint(p2, p2Transform); + int result = + this->CellLocator->IntersectWithLine(p1Transform, p2Transform, tol, points, cellIds, cell); + if (points) + { + double point[3]; + for (vtkIdType i = 0, max = points->GetNumberOfPoints(); i < max; ++i) + { + points->GetPoint(i, point); + this->Transform->InternalTransformPoint(point, point); + points->SetPoint(i, point); + } + } + return result; +} + +//------------------------------------------------------------------------------ +vtkIdType vtkLinearTransformCellLocator::FindClosestPointWithinRadius(double x[3], double radius, + double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, + int& inside) +{ + if (!this->CellLocator) + { + return -1; + } + this->BuildLocator(); + double xTransform[3]; + this->InverseTransform->InternalTransformPoint(x, xTransform); + vtkIdType result = this->CellLocator->FindClosestPointWithinRadius( + xTransform, radius, closestPoint, cell, cellId, subId, dist2, inside); + if (result != -1) + { + double point[3]; + for (vtkIdType i = 0, max = cell->GetNumberOfPoints(); i < max; ++i) + { + auto pointId = cell->PointIds->GetId(i); + this->DataSet->GetPoint(pointId, point); + cell->Points->SetPoint(i, point); + } + this->Transform->InternalTransformPoint(closestPoint, closestPoint); + } + return result; +} + +//------------------------------------------------------------------------------ +void vtkLinearTransformCellLocator::FindCellsWithinBounds(double*, vtkIdList*) +{ + vtkErrorMacro("FindCellsWithinBounds is not supported"); +} + +//------------------------------------------------------------------------------ +void vtkLinearTransformCellLocator::FindCellsAlongPlane( + const double o[3], const double n[3], double tolerance, vtkIdList* cells) +{ + if (!this->CellLocator) + { + return; + } + this->BuildLocator(); + double oTransform[3], nTransform[3]; + this->InverseTransform->InternalTransformPoint(o, oTransform); + this->InverseTransform->InternalTransformNormal(n, nTransform); + this->CellLocator->FindCellsAlongPlane(oTransform, nTransform, tolerance, cells); +} + +//------------------------------------------------------------------------------ +vtkIdType vtkLinearTransformCellLocator::FindCell( + double x[3], double tol2, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) +{ + if (!this->CellLocator) + { + return -1; + } + this->BuildLocator(); + double xTransform[3]; + this->InverseTransform->InternalTransformPoint(x, xTransform); + vtkIdType cellId = this->CellLocator->FindCell(xTransform, tol2, cell, subId, pcoords, weights); + if (cellId != -1) + { + double point[3]; + for (vtkIdType i = 0, max = cell->GetNumberOfPoints(); i < max; ++i) + { + auto pointId = cell->PointIds->GetId(i); + this->DataSet->GetPoint(pointId, point); + cell->Points->SetPoint(i, point); + } + } + return cellId; +} + +//------------------------------------------------------------------------------ +bool vtkLinearTransformCellLocator::InsideCellBounds(double x[3], vtkIdType cellId) +{ + if (!this->CellLocator) + { + return false; + } + this->BuildLocator(); + double xTransform[3]; + this->InverseTransform->InternalTransformPoint(x, xTransform); + return this->CellLocator->InsideCellBounds(xTransform, cellId); +} diff --git a/Common/DataModel/vtkLinearTransformCellLocator.h b/Common/DataModel/vtkLinearTransformCellLocator.h new file mode 100644 index 000000000000..78b3e4ba2cc6 --- /dev/null +++ b/Common/DataModel/vtkLinearTransformCellLocator.h @@ -0,0 +1,221 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkLinearTransformCellLocator.h + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/** + * @class vtkLinearTransformCellLocator + * @brief Cell locator adaptor to perform cell Location on datasets that are a linear + * transformation of the original dataset. + * + * vtkLinearTransformCellLocator is a cell locator adaptor that can accept any cell locator, e.g. + * vtkStaticCellLocator, vtkCellLocator, calculate the transformation matrix from the cell + * locator adaptor's dataset to the given dataset inside BuildLocator, and then use the cell locator + * and transformation to perform cell locator operations. The transformation matrix is computed + * using the https://en.wikipedia.org/wiki/Kabsch_algorithm. UseAllPoints allows to compute the + * transformation using all the points of the dataset (use that when you are not if it's a linear + * transformation) or 100 sample points (or less if the dataset is smaller) that are chosen + * every-nth. IsLinearTransformation validates if the dataset is a linear transformation of the cell + * locator's dataset based on the used points. + * + * @warning The cell locator adaptor MUST be built before using it. + * + * vtkCellTreeLocator does NOT utilize ANY vtkLocator/vtkAbstractCellLocator parameter: + * + * @sa + * vtkAbstractCellLocator vtkCellLocator vtkStaticCellLocator vtkCellTreeLocator vtkModifiedBSPTree + * vtkOBBTree + */ +#ifndef vtkLinearTransformCellLocator_h +#define vtkLinearTransformCellLocator_h + +#include "vtkAbstractCellLocator.h" +#include "vtkCommonDataModelModule.h" // For export macro +#include "vtkSmartPointer.h" // For vtkSmartPointer + +class vtkTransform; + +class VTKCOMMONDATAMODEL_EXPORT vtkLinearTransformCellLocator : public vtkAbstractCellLocator +{ +public: + ///@{ + /** + * Standard methods to instantiate, print and obtain type-related information. + */ + static vtkLinearTransformCellLocator* New(); + vtkTypeMacro(vtkLinearTransformCellLocator, vtkAbstractCellLocator); + void PrintSelf(ostream& os, vtkIndent indent) override; + ///@} + + ///@{ + /** + * Set/Get the cell locator to be used internally. + * + * The cell locator MUST be built before using it. + */ + virtual void SetCellLocator(vtkAbstractCellLocator* locator); + vtkGetObjectMacro(CellLocator, vtkAbstractCellLocator); + ///@} + + ///@{ + /** + * UseAllPoints allows to compute the transformation using all the points of the dataset + * (use that when you are not if it's a linear transformation) or 100 sample points + * (or less if the dataset is smaller) that are chosen every-nth. + * + * Default is off. + */ + vtkSetMacro(UseAllPoints, bool); + vtkBooleanMacro(UseAllPoints, bool); + vtkGetMacro(UseAllPoints, bool); + ///@} + + /** + * Get if the set dataset is a linear transformation of cell locator's dataset. The value is + * inside BuildLocator(). + */ + vtkGetMacro(IsLinearTransformation, bool); + + // Re-use any superclass signatures that we don't override. + using vtkAbstractCellLocator::FindCell; + using vtkAbstractCellLocator::FindClosestPoint; + using vtkAbstractCellLocator::FindClosestPointWithinRadius; + using vtkAbstractCellLocator::IntersectWithLine; + + /** + * Return intersection point (if any) AND the cell which was intersected by + * the finite line. The cell is returned as a cell id and as a generic cell. + * + * For other IntersectWithLine signatures, see vtkAbstractCellLocator. + */ + int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], + double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; + + /** + * Take the passed line segment and intersect it with the data set. + * The return value of the function is 0 if no intersections were found. + * For each intersection with the bounds of a cell or with a cell (if a cell is provided), + * the points and cellIds have the relevant information added sorted by t. + * If points or cellIds are nullptr pointers, then no information is generated for that list. + * + * For other IntersectWithLine signatures, see vtkAbstractCellLocator. + */ + int IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, + vtkIdList* cellIds, vtkGenericCell* cell) override; + + /** + * Return the closest point and the cell which is closest to the point x. + * The closest point is somewhere on a cell, it need not be one of the + * vertices of the cell. + * + * For other FindClosestPoint signatures, see vtkAbstractCellLocator. + */ + void FindClosestPoint(const double x[3], double closestPoint[3], vtkGenericCell* cell, + vtkIdType& cellId, int& subId, double& dist2) override + { + this->FindClosestPoint(x, closestPoint, cell, cellId, subId, dist2); + } + + /** + * Return the closest point within a specified radius and the cell which is + * closest to the point x. The closest point is somewhere on a cell, it + * need not be one of the vertices of the cell. This method returns 1 if a + * point is found within the specified radius. If there are no cells within + * the specified radius, the method returns 0 and the values of + * closestPoint, cellId, subId, and dist2 are undefined. If a closest point + * is found, inside returns the return value of the EvaluatePosition call to + * the closest cell; inside(=1) or outside(=0). + */ + vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], + vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; + + /** + * Return a list of unique cell ids inside of a given bounding box. The + * user must provide the vtkIdList to populate. + * + * This function does NOT work when SupportLinearTransformation is on. + */ + void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; + + /** + * Take the passed line segment and intersect it with the data set. + * For each intersection with the bounds of a cell, the cellIds + * have the relevant information added. If cellIds is nullptr + * pointer, then no information is generated for that list. + */ + void FindCellsAlongLine( + const double p1[3], const double p2[3], double tolerance, vtkIdList* cellsIds) override + { + this->FindCellsAlongLine(p1, p2, tolerance, cellsIds); + } + + /** + * Take the passed line segment and intersect it with the data set. + * For each intersection with the bounds of a cell, the cellIds + * have the relevant information added sort by t. If cellIds is nullptr + * pointer, then no information is generated for that list. + */ + void FindCellsAlongPlane( + const double o[3], const double n[3], double tolerance, vtkIdList* cells) override; + + /** + * Find the cell containing a given point. returns -1 if no cell found + * the cell parameters are copied into the supplied variables, a cell must + * be provided to store the information. + * + * For other FindCell signatures, see vtkAbstractCellLocator. + */ + vtkIdType FindCell(double x[3], double vtkNotUsed(tol2), vtkGenericCell* cell, int& subId, + double pcoords[3], double* weights) override; + + /** + * Quickly test if a point is inside the bounds of a particular cell. + * This function should be used ONLY after the locator is built. + */ + bool InsideCellBounds(double x[3], vtkIdType cellId) override; + + ///@{ + /** + * Satisfy vtkLocator abstract interface. + */ + void GenerateRepresentation(int level, vtkPolyData* pd) override; + void FreeSearchStructure() override; + void BuildLocator() override; + void ForceBuildLocator() override; + ///@} + + /** + * Shallow copy of a vtkLinearTransformCellLocator. + */ + void ShallowCopy(vtkAbstractCellLocator* locator) override; + +protected: + vtkLinearTransformCellLocator(); + ~vtkLinearTransformCellLocator() override; + + void BuildLocatorInternal() override; + + bool ComputeTransformation(); + + vtkSmartPointer InverseTransform; + vtkSmartPointer Transform; + bool IsLinearTransformation = false; + bool UseAllPoints = false; + + vtkAbstractCellLocator* CellLocator; + +private: + vtkLinearTransformCellLocator(const vtkLinearTransformCellLocator&) = delete; + void operator=(const vtkLinearTransformCellLocator&) = delete; +}; + +#endif diff --git a/Common/Transforms/vtkAbstractTransform.cxx b/Common/Transforms/vtkAbstractTransform.cxx index 5c53e072eb90..ed1745d06c3a 100644 --- a/Common/Transforms/vtkAbstractTransform.cxx +++ b/Common/Transforms/vtkAbstractTransform.cxx @@ -268,7 +268,7 @@ void vtkAbstractTransform::DeepCopy(vtkAbstractTransform* transform) //------------------------------------------------------------------------------ void vtkAbstractTransform::Update() { - // locking is require to ensure that the class is thread-safe + // locking is required to ensure that the class is thread-safe this->UpdateMutex.lock(); // check to see if we are a special 'inverse' transform -- GitLab From 79821806671c44e16a7c3f86ac54d46767948d11 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 11:45:26 -0400 Subject: [PATCH 0148/1015] Add TestCellLocatorsLinearTransform --- Common/DataModel/Testing/Cxx/CMakeLists.txt | 1 + .../Cxx/TestCellLocatorsLinearTransform.cxx | 166 ++++++++++++++++++ 2 files changed, 167 insertions(+) create mode 100644 Common/DataModel/Testing/Cxx/TestCellLocatorsLinearTransform.cxx diff --git a/Common/DataModel/Testing/Cxx/CMakeLists.txt b/Common/DataModel/Testing/Cxx/CMakeLists.txt index fd2ed5074ce2..0b17fed4331e 100644 --- a/Common/DataModel/Testing/Cxx/CMakeLists.txt +++ b/Common/DataModel/Testing/Cxx/CMakeLists.txt @@ -15,6 +15,7 @@ vtk_add_test_cxx(vtkCommonDataModelCxxTests tests TestAngularPeriodicDataArray.cxx TestArrayListTemplate.cxx TestCellInflation.cxx + TestCellLocatorsLinearTransform.cxx TestColor.cxx TestCoordinateFrame.cxx TestVector.cxx diff --git a/Common/DataModel/Testing/Cxx/TestCellLocatorsLinearTransform.cxx b/Common/DataModel/Testing/Cxx/TestCellLocatorsLinearTransform.cxx new file mode 100644 index 000000000000..c17b55e5ede6 --- /dev/null +++ b/Common/DataModel/Testing/Cxx/TestCellLocatorsLinearTransform.cxx @@ -0,0 +1,166 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestCellLocatorsLinearTransform.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ + +#include "vtkCellLocator.h" +#include "vtkCellTreeLocator.h" +#include "vtkDataSetTriangleFilter.h" +#include "vtkDebugLeaks.h" +#include "vtkLinearTransformCellLocator.h" +#include "vtkModifiedBSPTree.h" +#include "vtkNew.h" +#include "vtkPointSet.h" +#include "vtkPoints.h" +#include "vtkRTAnalyticSource.h" +#include "vtkSmartPointer.h" +#include "vtkStaticCellLocator.h" +#include "vtkTransform.h" +#include "vtkTransformFilter.h" +#include "vtkUnstructuredGrid.h" + +#include + +void GenerateRandomPoints(vtkIdType npts, vtkPoints* points, double bound) +{ + points->SetNumberOfPoints(npts); + std::uniform_real_distribution dist(-bound, bound); + std::default_random_engine randomEngine; // the number is a seed + std::mt19937 gen(randomEngine()); + double point[3]; + for (vtkIdType pointId = 0; pointId < npts; ++pointId) + { + point[0] = dist(gen); + point[1] = dist(gen); + point[2] = dist(gen); + points->SetPoint(pointId, point); + } +} + +bool TestCellLocators(vtkUnstructuredGrid* dataset, vtkPointSet* transformedDataset, + vtkPoints* transformedRandomPoints, vtkAbstractCellLocator* locatorType, + const double acceptableAccuracyPercentage) +{ + vtkAbstractCellLocator* locator = locatorType->NewInstance(); + // build locator with non-rotated dataset + locator->CacheCellBoundsOn(); + locator->UseExistingSearchStructureOn(); + locator->SetDataSet(dataset); + locator->BuildLocator(); + + // create a shallowCopiedLocator + vtkAbstractCellLocator* shallowCopiedLocator = locator->NewInstance(); + shallowCopiedLocator->ShallowCopy(locator); + // free locator's structure to ensure correctness of the shallow copy + locator->Delete(); + shallowCopiedLocator->SetDataSet(dataset); + shallowCopiedLocator->BuildLocator(); + + // create a vtkLinearTransformCellLocator with shallowCopiedLocator + vtkNew linearTransformLocator; + linearTransformLocator->SetCellLocator(shallowCopiedLocator); + linearTransformLocator->SetDataSet(transformedDataset); + linearTransformLocator->BuildLocator(); + + const vtkIdType numberOfRandomPointsPoints = transformedRandomPoints->GetNumberOfPoints(); + + // find the cells for the transformed random points using the original locator + std::vector cellIds(static_cast(numberOfRandomPointsPoints), -1); + double transformedPoint[3]; + for (vtkIdType i = 0; i < numberOfRandomPointsPoints; ++i) + { + transformedRandomPoints->GetPoint(i, transformedPoint); + cellIds[i] = linearTransformLocator->FindCell(transformedPoint); + } + + // create a locator with the transformed dataset + vtkAbstractCellLocator* locator2 = shallowCopiedLocator->NewInstance(); + locator2->SetDataSet(transformedDataset); + locator2->BuildLocator(); + + // find the cells for the transformed random points using the new locator + vtkIdType cellId; + vtkIdType cellIdsMatchedCounter = 0; + for (vtkIdType i = 0; i < numberOfRandomPointsPoints; ++i) + { + transformedRandomPoints->GetPoint(i, transformedPoint); + cellId = locator2->FindCell(transformedPoint); + if (cellIds[i] == cellId) + { + ++cellIdsMatchedCounter; + } + } + shallowCopiedLocator->Delete(); + locator2->Delete(); + + double matchAccuracyPercentage = 100 * static_cast(cellIdsMatchedCounter) / + static_cast(numberOfRandomPointsPoints); + std::cout << locatorType->GetClassName() << ": Match accuracy: " << matchAccuracyPercentage + << "%, Acceptable accuracy: " << acceptableAccuracyPercentage << "%" << std::endl; + + return matchAccuracyPercentage >= acceptableAccuracyPercentage; +} + +int TestCellLocatorsLinearTransform(int vtkNotUsed(argc), char* vtkNotUsed(argv)[]) +{ + const double bound = 10; + const vtkIdType numberOfRandomPointsPoints = 100000; + // Generally the accuracy is around 99% except bsp tree + const double acceptableAccuracyPercentage = 90; + + // create a dataset + vtkNew wavelet; + wavelet->SetWholeExtent(-bound, bound, -bound, bound, -bound, bound); + wavelet->SetCenter(0.0, 0.0, 0.0); + vtkNew triangleFilter; + triangleFilter->SetInputConnection(wavelet->GetOutputPort()); + triangleFilter->Update(); + auto dataset = triangleFilter->GetOutput(); + + // create random points + vtkNew randomPoints; + GenerateRandomPoints(numberOfRandomPointsPoints, randomPoints, bound); + + // create a transform + vtkNew transform; + transform->RotateX(30); + transform->RotateZ(45); + transform->Translate(5, 5, 5); + + // transform the points + vtkNew transformedRandomPoints; + transform->TransformPoints(randomPoints, transformedRandomPoints); + + // transform the dataset + vtkNew transformFilterDataset; + transformFilterDataset->SetInputData(dataset); + transformFilterDataset->SetTransform(transform); + transformFilterDataset->Update(); + auto transformedDataset = transformFilterDataset->GetOutput(); + + // test locators' accuracy using SupportLinearTransformation + bool testPassed = true; + vtkNew cl; + testPassed &= TestCellLocators( + dataset, transformedDataset, transformedRandomPoints, cl, acceptableAccuracyPercentage); + vtkNew scl; + testPassed &= TestCellLocators( + dataset, transformedDataset, transformedRandomPoints, scl, acceptableAccuracyPercentage); + vtkNew ctl; + testPassed &= TestCellLocators( + dataset, transformedDataset, transformedRandomPoints, ctl, acceptableAccuracyPercentage); + vtkNew bsp; + testPassed &= TestCellLocators( + dataset, transformedDataset, transformedRandomPoints, bsp, acceptableAccuracyPercentage); + return testPassed ? EXIT_SUCCESS : EXIT_FAILURE; +} -- GitLab From d9c2df044c55354a40daa5dd0b74df5e5061777f Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 11:46:04 -0400 Subject: [PATCH 0149/1015] Add changelog --- .../dev/add-vtkLinearTransformCellLocator.md | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 Documentation/release/dev/add-vtkLinearTransformCellLocator.md diff --git a/Documentation/release/dev/add-vtkLinearTransformCellLocator.md b/Documentation/release/dev/add-vtkLinearTransformCellLocator.md new file mode 100644 index 000000000000..55a01df1c25e --- /dev/null +++ b/Documentation/release/dev/add-vtkLinearTransformCellLocator.md @@ -0,0 +1,14 @@ +## Add vtkLinearTransformCellLocator + +vtkLinearTransformCellLocator is a cell locator adaptor that can accept any cell locator, e.g. +vtkStaticCellLocator, vtkCellLocator, calculate the transformation matrix from the cell +locator adaptor's dataset to the given dataset inside BuildLocator, and then use the cell locator +and transformation to perform cell locator operations. The transformation matrix is computed +using the https://en.wikipedia.org/wiki/Kabsch_algorithm. UseAllPoints allows to compute the +transformation using all the points of the dataset (use that when you are not if it's a linear +transformation) or 100 sample points (or less if the dataset is smaller) that are chosen +every-nth. IsLinearTransformation validates if the dataset is a linear transformation of the cell +locator's dataset based on the used points. This functionality is particularly useful for +datasets that have time-steps and each timestep is a linear transformation of the first timestep. Finally, the +vtkCellLocator, vtkStaticCellLocator, vtkCellTreeLocator, vtkModifiedBSPTree, and vtkLinearTransformCellLocator cell +locators also support ShallowCopy now. -- GitLab From d248b1496622e40d243fcb030a119d2d938b5100 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Wed, 11 May 2022 00:01:31 -0400 Subject: [PATCH 0150/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index cd66bdd46a43..8bbed992dd68 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220510) +set(VTK_BUILD_VERSION 20220511) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 686be14bc202f3e8bd8af46f9fd42bc0a6018f67 Mon Sep 17 00:00:00 2001 From: Lucas Givord Date: Mon, 9 May 2022 13:34:56 +0200 Subject: [PATCH 0151/1015] Add support for multiple selection in Parallel Coordinates view --- Charts/Core/Testing/Cxx/CMakeLists.txt | 1 + .../Cxx/TestParallelCoordinatesSelection.cxx | 430 ++++++++++++++++++ Charts/Core/vtkChartParallelCoordinates.cxx | 289 ++++++++---- Charts/Core/vtkChartParallelCoordinates.h | 13 +- Charts/Core/vtkPlotParallelCoordinates.cxx | 33 +- Charts/Core/vtkPlotParallelCoordinates.h | 15 +- ...-selection-in-parallel-coordinates-view.md | 4 + 7 files changed, 694 insertions(+), 91 deletions(-) create mode 100644 Charts/Core/Testing/Cxx/TestParallelCoordinatesSelection.cxx create mode 100644 Documentation/release/dev/multiple-selection-in-parallel-coordinates-view.md diff --git a/Charts/Core/Testing/Cxx/CMakeLists.txt b/Charts/Core/Testing/Cxx/CMakeLists.txt index 42d1738c7d31..709f062c2ac3 100644 --- a/Charts/Core/Testing/Cxx/CMakeLists.txt +++ b/Charts/Core/Testing/Cxx/CMakeLists.txt @@ -98,6 +98,7 @@ vtk_add_test_cxx(vtkChartsCoreCxxTests tests TestMultipleScalarsToColors.cxx TestParallelCoordinates.cxx TestParallelCoordinatesDouble.cxx + TestParallelCoordinatesSelection.cxx,NO_VALID TestPieChart.cxx TestPlotBarRangeHandlesItem.cxx,NO_DATA,NO_VALID TestPlotMatrix.cxx diff --git a/Charts/Core/Testing/Cxx/TestParallelCoordinatesSelection.cxx b/Charts/Core/Testing/Cxx/TestParallelCoordinatesSelection.cxx new file mode 100644 index 000000000000..56efa68a346a --- /dev/null +++ b/Charts/Core/Testing/Cxx/TestParallelCoordinatesSelection.cxx @@ -0,0 +1,430 @@ +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +static const int expectedValues[2] = { 62, 105 }; + +static const char* eventLog = "# StreamVersion 1.1\n" + "ExposeEvent 0 399 0 0 0 0\n" + "RenderEvent 0 399 0 0 0 0\n" + "TimerEvent 0 399 0 0 0 0\n" + "RenderEvent 0 399 0 0 0 0\n" + "EnterEvent 599 141 0 0 0 0\n" + "MouseMoveEvent 599 141 0 0 0 0\n" + "MouseMoveEvent 220 91 0 0 0 0\n" + "KeyPressEvent 220 91 0 0 1 Control_L\n" + "CharEvent 220 91 0 0 1 Control_L\n" + "KeyPressEvent 220 91 2 0 1 Shift_L\n" + "CharEvent 220 91 2 0 1 Shift_L\n" + "LeftButtonPressEvent 220 91 3 0 0 Shift_L\n" + "TimerEvent 220 91 3 0 0 Shift_L\n" + "RenderEvent 220 91 3 0 0 Shift_L\n" + "MouseMoveEvent 220 96 3 0 0 Shift_L\n" + "MouseMoveEvent 219 115 3 0 0 Shift_L\n" + "TimerEvent 219 115 3 0 0 Shift_L\n" + "RenderEvent 219 115 3 0 0 Shift_L\n" + "MouseMoveEvent 219 118 3 0 0 Shift_L\n" + "MouseMoveEvent 219 127 3 0 0 Shift_L\n" + "TimerEvent 219 127 3 0 0 Shift_L\n" + "RenderEvent 219 127 3 0 0 Shift_L\n" + "MouseMoveEvent 219 128 3 0 0 Shift_L\n" + "MouseMoveEvent 219 130 3 0 0 Shift_L\n" + "TimerEvent 219 130 3 0 0 Shift_L\n" + "RenderEvent 219 130 3 0 0 Shift_L\n" + "MouseMoveEvent 219 130 3 0 0 Shift_L\n" + "MouseMoveEvent 219 131 3 0 0 Shift_L\n" + "TimerEvent 219 131 3 0 0 Shift_L\n" + "RenderEvent 219 131 3 0 0 Shift_L\n" + "MouseMoveEvent 219 132 3 0 0 Shift_L\n" + "MouseMoveEvent 219 139 3 0 0 Shift_L\n" + "TimerEvent 219 139 3 0 0 Shift_L\n" + "RenderEvent 219 139 3 0 0 Shift_L\n" + "MouseMoveEvent 219 140 3 0 0 Shift_L\n" + "MouseMoveEvent 219 143 3 0 0 Shift_L\n" + "TimerEvent 219 143 3 0 0 Shift_L\n" + "RenderEvent 219 143 3 0 0 Shift_L\n" + "MouseMoveEvent 219 144 3 0 0 Shift_L\n" + "MouseMoveEvent 219 147 3 0 0 Shift_L\n" + "TimerEvent 219 147 3 0 0 Shift_L\n" + "RenderEvent 219 147 3 0 0 Shift_L\n" + "MouseMoveEvent 219 149 3 0 0 Shift_L\n" + "MouseMoveEvent 219 152 3 0 0 Shift_L\n" + "TimerEvent 219 152 3 0 0 Shift_L\n" + "RenderEvent 219 152 3 0 0 Shift_L\n" + "MouseMoveEvent 219 153 3 0 0 Shift_L\n" + "MouseMoveEvent 219 155 3 0 0 Shift_L\n" + "MouseMoveEvent 219 160 3 0 0 Shift_L\n" + "TimerEvent 219 160 3 0 0 Shift_L\n" + "RenderEvent 219 160 3 0 0 Shift_L\n" + "LeftButtonReleaseEvent 219 160 3 0 0 Shift_L\n" + "TimerEvent 219 160 3 0 0 Shift_L\n" + "RenderEvent 219 160 3 0 0 Shift_L\n" + "MouseMoveEvent 220 160 3 0 0 Shift_L\n" + "MouseMoveEvent 221 159 3 0 0 Shift_L\n" + "MouseMoveEvent 410 86 3 0 0 Shift_L\n" + "KeyReleaseEvent 410 86 3 0 1 Control_L\n" + "MouseMoveEvent 408 85 1 0 0 Control_L\n" + "KeyReleaseEvent 408 85 1 0 1 Shift_L\n" + "MouseMoveEvent 405 83 0 0 0 Shift_L\n" + "MouseMoveEvent 403 83 0 0 0 Shift_L\n" + "MouseMoveEvent 384 82 0 0 0 Shift_L\n" + "KeyPressEvent 384 82 0 0 1 Control_L\n" + "CharEvent 384 82 0 0 1 Control_L\n" + "KeyPressEvent 384 82 2 0 1 Shift_L\n" + "CharEvent 384 82 2 0 1 Shift_L\n" + "MouseMoveEvent 383 82 3 0 0 Shift_L\n" + "MouseMoveEvent 379 80 3 0 0 Shift_L\n" + "LeftButtonPressEvent 379 80 3 0 0 Shift_L\n" + "TimerEvent 379 80 3 0 0 Shift_L\n" + "RenderEvent 379 80 3 0 0 Shift_L\n" + "MouseMoveEvent 379 83 3 0 0 Shift_L\n" + "MouseMoveEvent 379 95 3 0 0 Shift_L\n" + "TimerEvent 379 95 3 0 0 Shift_L\n" + "RenderEvent 379 95 3 0 0 Shift_L\n" + "MouseMoveEvent 379 97 3 0 0 Shift_L\n" + "MouseMoveEvent 379 106 3 0 0 Shift_L\n" + "TimerEvent 379 106 3 0 0 Shift_L\n" + "RenderEvent 379 106 3 0 0 Shift_L\n" + "MouseMoveEvent 379 107 3 0 0 Shift_L\n" + "MouseMoveEvent 379 115 3 0 0 Shift_L\n" + "TimerEvent 379 115 3 0 0 Shift_L\n" + "RenderEvent 379 115 3 0 0 Shift_L\n" + "MouseMoveEvent 379 116 3 0 0 Shift_L\n" + "TimerEvent 379 116 3 0 0 Shift_L\n" + "RenderEvent 379 116 3 0 0 Shift_L\n" + "LeftButtonReleaseEvent 379 116 3 0 0 Shift_L\n" + "TimerEvent 379 116 3 0 0 Shift_L\n" + "RenderEvent 379 116 3 0 0 Shift_L\n" + "MouseMoveEvent 380 122 3 0 0 Shift_L\n" + "KeyReleaseEvent 380 122 3 0 1 Control_L\n" + "MouseMoveEvent 382 129 1 0 0 Control_L\n" + "MouseMoveEvent 388 143 1 0 0 Control_L\n" + "KeyReleaseEvent 388 143 1 0 1 Shift_L\n" + "MouseMoveEvent 390 156 0 0 0 Shift_L\n" + "MouseMoveEvent 393 164 0 0 0 Shift_L\n" + "MouseMoveEvent 381 317 0 0 0 Shift_L\n" + "KeyPressEvent 381 317 0 0 1 Control_L\n" + "CharEvent 381 317 0 0 1 Control_L\n" + "MouseMoveEvent 380 317 2 0 0 Control_L\n" + "MouseMoveEvent 379 317 2 0 0 Control_L\n" + "KeyPressEvent 379 317 2 0 1 Shift_L\n" + "CharEvent 379 317 2 0 1 Shift_L\n" + "LeftButtonPressEvent 379 317 3 0 0 Shift_L\n" + "TimerEvent 379 317 3 0 0 Shift_L\n" + "RenderEvent 379 317 3 0 0 Shift_L\n" + "MouseMoveEvent 379 318 3 0 0 Shift_L\n" + "MouseMoveEvent 379 329 3 0 0 Shift_L\n" + "TimerEvent 379 329 3 0 0 Shift_L\n" + "RenderEvent 379 329 3 0 0 Shift_L\n" + "MouseMoveEvent 379 331 3 0 0 Shift_L\n" + "MouseMoveEvent 379 341 3 0 0 Shift_L\n" + "TimerEvent 379 341 3 0 0 Shift_L\n" + "RenderEvent 379 341 3 0 0 Shift_L\n" + "MouseMoveEvent 379 343 3 0 0 Shift_L\n" + "MouseMoveEvent 379 348 3 0 0 Shift_L\n" + "TimerEvent 379 348 3 0 0 Shift_L\n" + "RenderEvent 379 348 3 0 0 Shift_L\n" + "MouseMoveEvent 379 349 3 0 0 Shift_L\n" + "MouseMoveEvent 379 351 3 0 0 Shift_L\n" + "TimerEvent 379 351 3 0 0 Shift_L\n" + "RenderEvent 379 351 3 0 0 Shift_L\n" + "LeftButtonReleaseEvent 379 351 3 0 0 Shift_L\n" + "TimerEvent 379 351 3 0 0 Shift_L\n" + "RenderEvent 379 351 3 0 0 Shift_L\n" + "MouseMoveEvent 379 351 3 0 0 Shift_L\n" + "MouseMoveEvent 379 350 3 0 0 Shift_L\n" + "MouseMoveEvent 378 207 3 0 0 Shift_L\n" + "KeyReleaseEvent 378 207 3 0 1 Control_L\n" + "MouseMoveEvent 376 206 1 0 0 Control_L\n" + "MouseMoveEvent 373 202 1 0 0 Control_L\n" + "MouseMoveEvent 371 200 1 0 0 Control_L\n" + "KeyReleaseEvent 371 200 1 0 1 Shift_L\n" + "MouseMoveEvent 366 196 0 0 0 Shift_L\n" + "MouseMoveEvent 218 99 0 0 0 Shift_L\n" + "KeyPressEvent 218 99 0 0 1 Shift_L\n" + "CharEvent 218 99 0 0 1 Shift_L\n" + "KeyPressEvent 218 99 1 0 1 Control_L\n" + "CharEvent 218 99 1 0 1 Control_L\n" + "MouseMoveEvent 218 101 3 0 0 Control_L\n" + "MouseMoveEvent 220 130 3 0 0 Control_L\n" + "LeftButtonPressEvent 220 130 3 0 0 Control_L\n" + "TimerEvent 220 130 3 0 0 Control_L\n" + "RenderEvent 220 130 3 0 0 Control_L\n" + "MouseMoveEvent 220 129 3 0 0 Control_L\n" + "MouseMoveEvent 220 126 3 0 0 Control_L\n" + "TimerEvent 220 126 3 0 0 Control_L\n" + "RenderEvent 220 126 3 0 0 Control_L\n" + "MouseMoveEvent 220 124 3 0 0 Control_L\n" + "MouseMoveEvent 220 122 3 0 0 Control_L\n" + "TimerEvent 220 122 3 0 0 Control_L\n" + "RenderEvent 220 122 3 0 0 Control_L\n" + "MouseMoveEvent 220 121 3 0 0 Control_L\n" + "TimerEvent 220 121 3 0 0 Control_L\n" + "RenderEvent 220 121 3 0 0 Control_L\n" + "MouseMoveEvent 220 121 3 0 0 Control_L\n" + "MouseMoveEvent 220 120 3 0 0 Control_L\n" + "TimerEvent 220 120 3 0 0 Control_L\n" + "RenderEvent 220 120 3 0 0 Control_L\n" + "MouseMoveEvent 220 119 3 0 0 Control_L\n" + "MouseMoveEvent 220 117 3 0 0 Control_L\n" + "TimerEvent 220 117 3 0 0 Control_L\n" + "RenderEvent 220 117 3 0 0 Control_L\n" + "MouseMoveEvent 220 116 3 0 0 Control_L\n" + "MouseMoveEvent 220 111 3 0 0 Control_L\n" + "TimerEvent 220 111 3 0 0 Control_L\n" + "RenderEvent 220 111 3 0 0 Control_L\n" + "MouseMoveEvent 220 109 3 0 0 Control_L\n" + "MouseMoveEvent 220 105 3 0 0 Control_L\n" + "TimerEvent 220 105 3 0 0 Control_L\n" + "RenderEvent 220 105 3 0 0 Control_L\n" + "MouseMoveEvent 220 104 3 0 0 Control_L\n" + "MouseMoveEvent 220 103 3 0 0 Control_L\n" + "MouseMoveEvent 220 102 3 0 0 Control_L\n" + "MouseMoveEvent 220 101 3 0 0 Control_L\n" + "TimerEvent 220 101 3 0 0 Control_L\n" + "RenderEvent 220 101 3 0 0 Control_L\n" + "MouseMoveEvent 220 100 3 0 0 Control_L\n" + "MouseMoveEvent 220 99 3 0 0 Control_L\n" + "MouseMoveEvent 220 98 3 0 0 Control_L\n" + "TimerEvent 220 98 3 0 0 Control_L\n" + "RenderEvent 220 98 3 0 0 Control_L\n" + "LeftButtonReleaseEvent 220 98 3 0 0 Control_L\n" + "TimerEvent 220 98 3 0 0 Control_L\n" + "RenderEvent 220 98 3 0 0 Control_L\n" + "MouseMoveEvent 222 100 3 0 0 Control_L\n" + "MouseMoveEvent 225 102 3 0 0 Control_L\n" + "MouseMoveEvent 226 103 3 0 0 Control_L\n" + "MouseMoveEvent 229 103 3 0 0 Control_L\n" + "MouseMoveEvent 231 104 3 0 0 Control_L\n" + "MouseMoveEvent 232 105 3 0 0 Control_L\n" + "KeyReleaseEvent 232 105 3 0 1 Control_L\n" + "KeyReleaseEvent 232 105 1 0 1 Shift_L\n" + "MouseMoveEvent 232 104 0 0 0 Shift_L\n" + "MouseMoveEvent 217 84 0 0 0 Shift_L\n" + "KeyPressEvent 217 84 0 0 1 Control_L\n" + "CharEvent 217 84 0 0 1 Control_L\n" + "KeyPressEvent 217 84 2 0 1 Shift_L\n" + "CharEvent 217 84 2 0 1 Shift_L\n" + "LeftButtonPressEvent 217 84 3 0 0 Shift_L\n" + "TimerEvent 217 84 3 0 0 Shift_L\n" + "RenderEvent 217 84 3 0 0 Shift_L\n" + "MouseMoveEvent 217 85 3 0 0 Shift_L\n" + "MouseMoveEvent 217 86 3 0 0 Shift_L\n" + "TimerEvent 217 86 3 0 0 Shift_L\n" + "RenderEvent 217 86 3 0 0 Shift_L\n" + "MouseMoveEvent 217 87 3 0 0 Shift_L\n" + "MouseMoveEvent 217 89 3 0 0 Shift_L\n" + "MouseMoveEvent 217 90 3 0 0 Shift_L\n" + "MouseMoveEvent 217 91 3 0 0 Shift_L\n" + "TimerEvent 217 91 3 0 0 Shift_L\n" + "RenderEvent 217 91 3 0 0 Shift_L\n" + "MouseMoveEvent 217 91 3 0 0 Shift_L\n" + "MouseMoveEvent 217 92 3 0 0 Shift_L\n" + "TimerEvent 217 92 3 0 0 Shift_L\n" + "RenderEvent 217 92 3 0 0 Shift_L\n" + "MouseMoveEvent 217 93 3 0 0 Shift_L\n" + "MouseMoveEvent 217 94 3 0 0 Shift_L\n" + "MouseMoveEvent 217 95 3 0 0 Shift_L\n" + "TimerEvent 217 95 3 0 0 Shift_L\n" + "RenderEvent 217 95 3 0 0 Shift_L\n" + "MouseMoveEvent 217 96 3 0 0 Shift_L\n" + "MouseMoveEvent 217 97 3 0 0 Shift_L\n" + "MouseMoveEvent 217 98 3 0 0 Shift_L\n" + "TimerEvent 217 98 3 0 0 Shift_L\n" + "RenderEvent 217 98 3 0 0 Shift_L\n" + "MouseMoveEvent 217 98 3 0 0 Shift_L\n" + "TimerEvent 217 98 3 0 0 Shift_L\n" + "RenderEvent 217 98 3 0 0 Shift_L\n" + "MouseMoveEvent 217 98 3 0 0 Shift_L\n" + "MouseMoveEvent 217 99 3 0 0 Shift_L\n" + "TimerEvent 217 99 3 0 0 Shift_L\n" + "RenderEvent 217 99 3 0 0 Shift_L\n" + "MouseMoveEvent 217 100 3 0 0 Shift_L\n" + "MouseMoveEvent 217 100 3 0 0 Shift_L\n" + "TimerEvent 217 100 3 0 0 Shift_L\n" + "RenderEvent 217 100 3 0 0 Shift_L\n" + "LeftButtonReleaseEvent 217 100 3 0 0 Shift_L\n" + "TimerEvent 217 100 3 0 0 Shift_L\n" + "RenderEvent 217 100 3 0 0 Shift_L\n" + "MouseMoveEvent 218 100 3 0 0 Shift_L\n" + "MouseMoveEvent 218 99 3 0 0 Shift_L\n" + "MouseMoveEvent 226 91 3 0 0 Shift_L\n" + "MouseMoveEvent 226 90 3 0 0 Shift_L\n" + "KeyReleaseEvent 226 90 3 0 1 Control_L\n" + "KeyReleaseEvent 226 90 1 0 1 Shift_L\n" + "MouseMoveEvent 225 91 0 0 0 Shift_L\n" + "KeyPressEvent 225 91 0 0 1 Alt_L\n" + "CharEvent 225 91 0 0 1 Alt_L\n" + "KeyPressEvent 225 91 4 0 1 Control_L\n" + "CharEvent 225 91 4 0 1 Control_L\n" + "MouseMoveEvent 225 91 6 0 0 Control_L\n" + "MouseMoveEvent 224 91 6 0 0 Control_L\n" + "MouseMoveEvent 219 79 6 0 0 Control_L\n" + "LeftButtonPressEvent 219 79 6 0 0 Control_L\n" + "TimerEvent 219 79 6 0 0 Control_L\n" + "RenderEvent 219 79 6 0 0 Control_L\n" + "MouseMoveEvent 219 80 6 0 0 Control_L\n" + "MouseMoveEvent 219 85 6 0 0 Control_L\n" + "TimerEvent 219 85 6 0 0 Control_L\n" + "RenderEvent 219 85 6 0 0 Control_L\n" + "MouseMoveEvent 219 86 6 0 0 Control_L\n" + "MouseMoveEvent 219 90 6 0 0 Control_L\n" + "MouseMoveEvent 219 92 6 0 0 Control_L\n" + "TimerEvent 219 92 6 0 0 Control_L\n" + "RenderEvent 219 92 6 0 0 Control_L\n" + "MouseMoveEvent 219 93 6 0 0 Control_L\n" + "MouseMoveEvent 219 96 6 0 0 Control_L\n" + "TimerEvent 219 96 6 0 0 Control_L\n" + "RenderEvent 219 96 6 0 0 Control_L\n" + "MouseMoveEvent 219 96 6 0 0 Control_L\n" + "TimerEvent 219 96 6 0 0 Control_L\n" + "RenderEvent 219 96 6 0 0 Control_L\n" + "MouseMoveEvent 219 97 6 0 0 Control_L\n" + "MouseMoveEvent 219 97 6 0 0 Control_L\n" + "MouseMoveEvent 219 98 6 0 0 Control_L\n" + "TimerEvent 219 98 6 0 0 Control_L\n" + "RenderEvent 219 98 6 0 0 Control_L\n" + "MouseMoveEvent 219 99 6 0 0 Control_L\n" + "MouseMoveEvent 219 100 6 0 0 Control_L\n" + "MouseMoveEvent 219 101 6 0 0 Control_L\n" + "MouseMoveEvent 219 102 6 0 0 Control_L\n" + "TimerEvent 219 102 6 0 0 Control_L\n" + "RenderEvent 219 102 6 0 0 Control_L\n" + "MouseMoveEvent 219 103 6 0 0 Control_L\n" + "MouseMoveEvent 219 103 6 0 0 Control_L\n" + "TimerEvent 219 103 6 0 0 Control_L\n" + "RenderEvent 219 103 6 0 0 Control_L\n" + "LeftButtonReleaseEvent 219 103 6 0 0 Control_L\n" + "TimerEvent 219 103 6 0 0 Control_L\n" + "RenderEvent 219 103 6 0 0 Control_L\n" + "MouseMoveEvent 221 102 6 0 0 Control_L\n" + "MouseMoveEvent 237 97 6 0 0 Control_L\n" + "KeyReleaseEvent 237 97 6 0 1 Alt_L\n" + "KeyReleaseEvent 237 97 2 0 1 Control_L\n" + "MouseMoveEvent 242 103 0 0 0 Control_L\n" + "MouseMoveEvent 571 305 0 0 0 Control_L\n" + "LeaveEvent 602 305 0 0 0 Control_L\n"; + +namespace +{ +static void UpdateSelectionMode(vtkObject* caller, unsigned long vtkNotUsed(eventId), + void* clientData, void* vtkNotUsed(callData)) +{ + const auto iren = static_cast(caller); + auto chart = static_cast(clientData); + + if (iren->GetControlKey() != 0) + { + chart->SetSelectionMode(vtkContextScene::SELECTION_ADDITION); + } + + if (iren->GetShiftKey() != 0) + { + chart->SetSelectionMode(vtkContextScene::SELECTION_SUBTRACTION); + } + + if (iren->GetAltKey() != 0) + { + chart->SetSelectionMode(vtkContextScene::SELECTION_TOGGLE); + } +} +} + +int TestParallelCoordinatesSelection(int vtkNotUsed(argc), char* vtkNotUsed(argv)[]) +{ + // Set up a 2D scene, add an parallel coordinate chart to it + vtkNew view; + view->GetRenderWindow()->SetWindowName("TestParallelCoordinateSelection"); + view->GetRenderWindow()->SetSize(600, 400); + view->GetRenderWindow()->SetMultiSamples(0); + vtkNew chart; + view->GetScene()->AddItem(chart); + + // Create a table with some points in it... + vtkNew table; + vtkNew arrX; + arrX->SetName("x"); + table->AddColumn(arrX); + vtkNew arrC; + arrC->SetName("cosine"); + table->AddColumn(arrC); + vtkNew arrS; + arrS->SetName("sine"); + table->AddColumn(arrS); + vtkNew arrS2; + arrS2->SetName("tangent"); + table->AddColumn(arrS2); + + int numPoints = 200; + float inc = 7.5 / (numPoints - 1); + table->SetNumberOfRows(numPoints); + for (int i = 0; i < numPoints; ++i) + { + table->SetValue(i, 0, i * inc); + table->SetValue(i, 1, cos(i * inc)); + table->SetValue(i, 2, sin(i * inc)); + table->SetValue(i, 3, tan(i * inc) + 0.5); + } + chart->GetPlot(0)->SetInputData(table); + + // Link some key events to switch between each selection mode. + vtkNew keypressCallback; + keypressCallback->SetCallback(::UpdateSelectionMode); + keypressCallback->SetClientData(chart); + view->GetInteractor()->AddObserver(vtkCommand::KeyPressEvent, keypressCallback); + + // record events + vtkSmartPointer recorder = + vtkSmartPointer::New(); + recorder->SetInteractor(view->GetInteractor()); + view->GetInteractor()->Initialize(); + recorder->ReadFromInputStringOn(); + recorder->SetInputString(eventLog); + recorder->Play(); + + if (chart->GetNumberOfPlots() != 1) + { + std::cerr << "Wrong number of plot. Expected 1 but got " << chart->GetNumberOfPlots() + << std::endl; + return EXIT_FAILURE; + } + + auto ids = chart->GetPlot(0)->GetSelection(); + if (!ids) + { + std::cerr << "Selection shouldn't be null" << std::endl; + return EXIT_FAILURE; + } + + if (ids->GetSize() != 2) + { + std::cerr << "Wrong number of id selection. Expected to have 2 ids but got " << ids->GetSize() + << std::endl; + return EXIT_FAILURE; + } + + for (int i = 0; i < ids->GetSize(); i++) + { + if (ids->GetValue(i) != expectedValues[i]) + { + std::cerr << "Wrong id values in the current selection. Expected to have " + << expectedValues[i] << " id but got " << ids->GetValue(i) << std::endl; + return EXIT_FAILURE; + } + } + + return EXIT_SUCCESS; +} diff --git a/Charts/Core/vtkChartParallelCoordinates.cxx b/Charts/Core/vtkChartParallelCoordinates.cxx index 88419b5139bd..4ad59c0b986b 100644 --- a/Charts/Core/vtkChartParallelCoordinates.cxx +++ b/Charts/Core/vtkChartParallelCoordinates.cxx @@ -38,19 +38,14 @@ #include "vtkTransform2D.h" #include +#include #include // Minimal storage class for STL containers etc. -class vtkChartParallelCoordinates::Private +struct vtkChartParallelCoordinates::Private final { -public: - Private() - { - this->Plot = vtkSmartPointer::New(); - this->Transform = vtkSmartPointer::New(); - this->CurrentAxis = -1; - this->AxisResize = -1; - } + Private() { this->Plot = vtkSmartPointer::New(); } + ~Private() { for (std::vector::iterator it = this->Axes.begin(); it != this->Axes.end(); ++it) @@ -58,13 +53,22 @@ public: (*it)->Delete(); } } + vtkSmartPointer Plot; - vtkSmartPointer Transform; + vtkNew Transform; std::vector Axes; - std::vector> AxesSelections; - int CurrentAxis; - int AxisResize; - bool InteractiveSelection; + + /** + * Store for each axe, an sorted array like { minRange1, maxRange1, minRange2, maxRange2, ...} to + * simplify the treatment of selection for addition, subtraction, toggle + */ + std::vector> AxesSelections; + std::array CurrentSelection = { -1, -1 }; + + int CurrentAxis = -1; + int AxisResize = -1; + + bool InteractiveSelection = false; }; //------------------------------------------------------------------------------ @@ -129,7 +133,8 @@ void vtkChartParallelCoordinates::Update() this->AddItem(axis); this->Storage->Axes.push_back(axis); } - this->Storage->AxesSelections.resize(this->Storage->Axes.size(), vtkVector2f(0, 0)); + + this->Storage->AxesSelections.resize(this->Storage->Axes.size()); } vtkDataSetAttributes* rowData = table->GetRowData(); @@ -214,27 +219,47 @@ bool vtkChartParallelCoordinates::Paint(vtkContext2D* painter) axis->GetPoint1()[0] - 10, this->Point1[1], 20, this->Point2[1] - this->Point1[1]); } - // Now draw our active selections - for (size_t i = 0; i < this->Storage->AxesSelections.size(); ++i) + // Draw the active selection + std::array range = this->Storage->CurrentSelection; + if (range[0] != range[1]) + { + this->PaintRect(painter, this->Storage->CurrentAxis, range[0], range[1]); + } + + // Draw all stored range + for (int axis = 0; axis < this->Storage->AxesSelections.size(); ++axis) { - vtkVector& range = this->Storage->AxesSelections[i]; - if (range[0] != range[1]) + int size = this->Storage->AxesSelections[axis].size(); + size = size - size % 2; + for (int j = 0; j < size; j += 2) { - painter->GetBrush()->SetColor(200, 20, 20, 220); - float x = this->Storage->Axes[i]->GetPoint1()[0] - 5; - float y = range[0]; - y *= this->Storage->Transform->GetMatrix()->GetElement(1, 1); - y += this->Storage->Transform->GetMatrix()->GetElement(1, 2); - float height = range[1] - range[0]; - height *= this->Storage->Transform->GetMatrix()->GetElement(1, 1); - - painter->DrawRect(x, y, 10, height); + float min = this->Storage->AxesSelections[axis][j]; + float max = this->Storage->AxesSelections[axis][j + 1]; + if (min != max) + { + this->PaintRect(painter, axis, min, max); + } } } return true; } +//------------------------------------------------------------------------------ +bool vtkChartParallelCoordinates::PaintRect(vtkContext2D* painter, int axis, float min, float max) +{ + painter->GetBrush()->SetColor(200, 20, 20, 220); + float x = this->Storage->Axes[axis]->GetPoint1()[0] - 5; + float y = min; + y *= this->Storage->Transform->GetMatrix()->GetElement(1, 1); + y += this->Storage->Transform->GetMatrix()->GetElement(1, 2); + float height = max - min; + height *= this->Storage->Transform->GetMatrix()->GetElement(1, 1); + + painter->DrawRect(x, y, 10, height); + return true; +} + //------------------------------------------------------------------------------ void vtkChartParallelCoordinates::SetColumnVisibility(const vtkStdString& name, bool visible) { @@ -459,7 +484,7 @@ bool vtkChartParallelCoordinates::MouseMoveEvent(const vtkContextMouseEvent& mou // If an axis is selected, then lets try to narrow down a selection... if (this->Storage->CurrentAxis >= 0) { - vtkVector& range = this->Storage->AxesSelections[this->Storage->CurrentAxis]; + std::array& range = this->Storage->CurrentSelection; // Normalize the coordinates float current = mouse.GetScenePos().GetY(); @@ -519,11 +544,6 @@ bool vtkChartParallelCoordinates::MouseMoveEvent(const vtkContextMouseEvent& mou float scale = (axis->GetPoint2()[1] - axis->GetPoint1()[1]) / (axis->GetMaximum() - axis->GetMinimum()); axis->SetMinimum(axis->GetMinimum() - deltaY / scale); - // If there is an active selection on the axis, remove it - if (this->ResetAxeSelection(this->Storage->CurrentAxis)) - { - this->ResetSelection(); - } // Now update everything that needs to be axis->Update(); @@ -537,11 +557,6 @@ bool vtkChartParallelCoordinates::MouseMoveEvent(const vtkContextMouseEvent& mou float scale = (axis->GetPoint2()[1] - axis->GetPoint1()[1]) / (axis->GetMaximum() - axis->GetMinimum()); axis->SetMaximum(axis->GetMaximum() - deltaY / scale); - // If there is an active selection on the axis, remove it - if (this->ResetAxeSelection(this->Storage->CurrentAxis)) - { - this->ResetSelection(); - } axis->Update(); axis->RecalculateTickSpacing(); @@ -575,8 +590,6 @@ bool vtkChartParallelCoordinates::MouseButtonPressEvent(const vtkContextMouseEve axis->GetPoint1()[0] + 10 > mouse.GetScenePos()[0]) { this->Storage->CurrentAxis = static_cast(i); - this->ResetAxeSelection(this->Storage->CurrentAxis); - this->ResetSelection(); // This is a manual interactive selection this->Storage->InteractiveSelection = true; @@ -584,7 +597,7 @@ bool vtkChartParallelCoordinates::MouseButtonPressEvent(const vtkContextMouseEve float low = mouse.GetScenePos()[1]; low -= this->Storage->Transform->GetMatrix()->GetElement(1, 2); low /= this->Storage->Transform->GetMatrix()->GetElement(1, 1); - vtkVector& range = this->Storage->AxesSelections[this->Storage->CurrentAxis]; + std::array& range = this->Storage->CurrentSelection; range[0] = range[1] = low; this->Scene->SetDirty(true); @@ -641,7 +654,7 @@ bool vtkChartParallelCoordinates::MouseButtonReleaseEvent(const vtkContextMouseE { if (this->Storage->CurrentAxis >= 0) { - vtkVector& range = this->Storage->AxesSelections[this->Storage->CurrentAxis]; + std::array& range = this->Storage->CurrentSelection; float final = mouse.GetScenePos()[1]; final -= this->Storage->Transform->GetMatrix()->GetElement(1, 2); @@ -661,22 +674,11 @@ bool vtkChartParallelCoordinates::MouseButtonReleaseEvent(const vtkContextMouseE range[1] = final; } - if (range[0] == range[1]) - { - this->ResetSelection(); - } - else - { - // Add a new selection - if (range[0] < range[1]) - { - this->Storage->Plot->SetSelectionRange(this->Storage->CurrentAxis, range[0], range[1]); - } - else - { - this->Storage->Plot->SetSelectionRange(this->Storage->CurrentAxis, range[1], range[0]); - } - } + // Update all range stored based on the new selection + UpdateCurrentAxisSelection(this->Storage->CurrentAxis); + this->Storage->CurrentSelection[0] = 0; + this->Storage->CurrentSelection[1] = 0; + // This is a manual interactive selection this->Storage->InteractiveSelection = true; @@ -717,38 +719,27 @@ bool vtkChartParallelCoordinates::MouseWheelEvent(const vtkContextMouseEvent&, i void vtkChartParallelCoordinates::ResetSelection() { // This function takes care of resetting the selection of the chart - // Reset the axes. this->Storage->Plot->ResetSelectionRange(); - // Now set the remaining selections that were kept - for (size_t i = 0; i < this->Storage->AxesSelections.size(); ++i) + for (size_t axe = 0; axe < this->Storage->AxesSelections.size(); axe++) { - vtkVector& range = this->Storage->AxesSelections[i]; - if (range[0] != range[1]) + if (this->Storage->AxesSelections[axe].size() > 0) { - // Process the selected range and display this - if (range[0] < range[1]) - { - this->Storage->Plot->SetSelectionRange(static_cast(i), range[0], range[1]); - } - else - { - this->Storage->Plot->SetSelectionRange(static_cast(i), range[1], range[0]); - } + this->Storage->Plot->SetSelectionRange( + static_cast(axe), this->Storage->AxesSelections[axe]); } } } //------------------------------------------------------------------------------ -bool vtkChartParallelCoordinates::ResetAxeSelection(int axe) +void vtkChartParallelCoordinates::ResetAxeSelection(int axe) { - vtkVector& range = this->Storage->AxesSelections[axe]; - if (range[0] != range[1]) + for (int i = 0; i < this->Storage->AxesSelections[axe].size(); i += 2) { - range[0] = range[1] = 0.0f; - return true; + float& min = this->Storage->AxesSelections[axe][i]; + float& max = this->Storage->AxesSelections[axe][i + 1]; + min = max = 0.0f; } - return false; } //------------------------------------------------------------------------------ @@ -777,7 +768,7 @@ void vtkChartParallelCoordinates::SwapAxes(int a1, int a2) this->Storage->Axes[a1] = this->Storage->Axes[a2]; this->Storage->Axes[a2] = axisTmp; - vtkVector selTmp = this->Storage->AxesSelections[a1]; + std::vector selTmp = this->Storage->AxesSelections[a1]; this->Storage->AxesSelections[a1] = this->Storage->AxesSelections[a2]; this->Storage->AxesSelections[a2] = selTmp; @@ -787,3 +778,141 @@ void vtkChartParallelCoordinates::SwapAxes(int a1, int a2) this->Storage->Plot->Update(); } + +//------------------------------------------------------------------------------ +void vtkChartParallelCoordinates::UpdateCurrentAxisSelection(int axisId) +{ + // min/max in the selection can be not ordered + std::array currentSelection = this->Storage->CurrentSelection; + float minCurrentSelection = std::min(currentSelection[0], currentSelection[1]); + float maxCurrentSelection = std::max(currentSelection[0], currentSelection[1]); + + bool isANewRange = true; + bool startAMerge = false; + + // Invalid range will be set to -1 + int size = this->Storage->AxesSelections[axisId].size(); + size = + this->Storage->AxesSelections[axisId].size() - this->Storage->AxesSelections[axisId].size() % 2; + for (int i = 0; i < size; i += 2) + { + if (this->GetSelectionMode() == vtkContextScene::SELECTION_TOGGLE) + { + break; + } + + float& minRange = this->Storage->AxesSelections[axisId][i]; + float& maxRange = this->Storage->AxesSelections[axisId][i + 1]; + + if (this->GetSelectionMode() == vtkContextScene::SELECTION_ADDITION) + { + // Delete range inside the currentSeleciton + if (minCurrentSelection < minRange && maxCurrentSelection > maxRange) + { + minRange = -1; + if (startAMerge && i >= this->Storage->AxesSelections[axisId].size()) + { + maxRange = maxCurrentSelection; + } + else + { + maxRange = -1; + continue; + } + } + + // Increase the range in min + if (minCurrentSelection < minRange && maxCurrentSelection > minRange && + maxCurrentSelection < maxRange) + { + if (startAMerge) + { + minRange = -1; + } + else + { + minRange = minCurrentSelection; + isANewRange = false; + break; + } + } + + // Merge range by addition + if (minCurrentSelection > minRange && minCurrentSelection < maxRange) + { + if (maxCurrentSelection > maxRange) + { + bool isLastRange = (i + 2) >= this->Storage->AxesSelections[axisId].size(); + if (isLastRange) + { + maxRange = maxCurrentSelection; + isANewRange = false; + break; + } + else + { + if (maxCurrentSelection < this->Storage->AxesSelections[axisId][i + 2]) + { + maxRange = maxCurrentSelection; + } + else + { + maxRange = -1; + startAMerge = true; + } + } + isANewRange = false; + } + } + } + + if (this->GetSelectionMode() == vtkContextScene::SELECTION_SUBTRACTION) + { + isANewRange = false; + + // Delete a range + if (minCurrentSelection <= minRange && maxCurrentSelection >= maxRange) + { + minRange = -1; + maxRange = -1; + } + + // Shrink a range + if (minCurrentSelection < minRange && + (maxCurrentSelection > minRange && maxCurrentSelection <= maxRange)) + { + minRange = maxCurrentSelection; + } + if (maxCurrentSelection > maxRange && + (minCurrentSelection < maxRange && minCurrentSelection >= minRange)) + { + maxRange = minCurrentSelection; + } + + // Split a range in 2 part + if (minCurrentSelection > minRange && maxCurrentSelection < maxRange) + { + isANewRange = true; + break; + } + } + } + + // Remove invalidated ranges + this->Storage->AxesSelections[axisId].erase( + std::remove(this->Storage->AxesSelections[axisId].begin(), + this->Storage->AxesSelections[axisId].end(), -1), + this->Storage->AxesSelections[axisId].end()); + + if (isANewRange) + { + this->Storage->AxesSelections[axisId].push_back(minCurrentSelection); + this->Storage->AxesSelections[axisId].push_back(maxCurrentSelection); + } + + std::sort( + this->Storage->AxesSelections[axisId].begin(), this->Storage->AxesSelections[axisId].end()); + + // To support multiple selection, we need to recalculate all the selection + this->ResetSelection(); +} diff --git a/Charts/Core/vtkChartParallelCoordinates.h b/Charts/Core/vtkChartParallelCoordinates.h index a96eb4e9ba56..0e9d0e1b65fe 100644 --- a/Charts/Core/vtkChartParallelCoordinates.h +++ b/Charts/Core/vtkChartParallelCoordinates.h @@ -56,6 +56,11 @@ public: */ bool Paint(vtkContext2D* painter) override; + /** + * Draw a rect on a specific axis + */ + bool PaintRect(vtkContext2D* painter, int axis, float min, float max); + /** * Set the visibility of the specified column. */ @@ -149,6 +154,12 @@ public: */ bool MouseWheelEvent(const vtkContextMouseEvent& mouse, int delta) override; + /** + * Update the selection of an axis based on the current selectionMode we + * have previously set. + */ + void UpdateCurrentAxisSelection(int axisId); + protected: vtkChartParallelCoordinates(); ~vtkChartParallelCoordinates() override; @@ -179,7 +190,7 @@ protected: vtkTimeStamp BuildTime; void ResetSelection(); - bool ResetAxeSelection(int axe); + void ResetAxeSelection(int axe); void ResetAxesSelection(); void UpdateGeometry(); void CalculatePlotTransform(); diff --git a/Charts/Core/vtkPlotParallelCoordinates.cxx b/Charts/Core/vtkPlotParallelCoordinates.cxx index 6237bb05e478..60470e59a9b0 100644 --- a/Charts/Core/vtkPlotParallelCoordinates.cxx +++ b/Charts/Core/vtkPlotParallelCoordinates.cxx @@ -184,6 +184,12 @@ void vtkPlotParallelCoordinates::GetBounds(double*) {} //------------------------------------------------------------------------------ bool vtkPlotParallelCoordinates::SetSelectionRange(int axis, float low, float high) +{ + return this->SetSelectionRange(axis, { low, high }); +} + +//------------------------------------------------------------------------------ +bool vtkPlotParallelCoordinates::SetSelectionRange(int axis, std::vector axisSelection) { if (!this->Selection) { @@ -200,10 +206,18 @@ bool vtkPlotParallelCoordinates::SetSelectionRange(int axis, float low, float hi { vtkIdType id = 0; this->Selection->GetTypedTuple(i, &id); - if (col[id] >= low && col[id] <= high) + + int size = axisSelection.size() - axisSelection.size() % 2; + for (int j = 0; j < size; j += 2) { - // Remove this point - no longer selected - array->InsertNextValue(id); + float low = axisSelection[j]; + float high = axisSelection[j + 1]; + if (col[id] >= low && col[id] <= high) + { + // Remove this point - no longer selected + array->InsertNextValue(id); + break; + } } } this->Selection->DeepCopy(array); @@ -215,10 +229,17 @@ bool vtkPlotParallelCoordinates::SetSelectionRange(int axis, float low, float hi std::vector& col = this->Storage->at(axis); for (size_t i = 0; i < col.size(); ++i) { - if (col[i] >= low && col[i] <= high) + int size = axisSelection.size() - axisSelection.size() % 2; + for (int j = 0; j < size; j += 2) { - // Remove this point - no longer selected - this->Selection->InsertNextValue(static_cast(i)); + float low = axisSelection[j]; + float high = axisSelection[j + 1]; + if (col[i] >= low && col[i] <= high) + { + // Remove this point - no longer selected + this->Selection->InsertNextValue(static_cast(i)); + break; + } } } this->Storage->SelectionInitialized = true; diff --git a/Charts/Core/vtkPlotParallelCoordinates.h b/Charts/Core/vtkPlotParallelCoordinates.h index 8083f635f650..a8aeec30370f 100644 --- a/Charts/Core/vtkPlotParallelCoordinates.h +++ b/Charts/Core/vtkPlotParallelCoordinates.h @@ -31,9 +31,9 @@ #include "vtkStdString.h" // For vtkStdString ivars class vtkChartParallelCoordinates; -class vtkTable; -class vtkStdString; class vtkScalarsToColors; +class vtkStdString; +class vtkTable; class vtkUnsignedCharArray; class VTKCHARTSCORE_EXPORT vtkPlotParallelCoordinates : public vtkPlot @@ -66,9 +66,16 @@ public: void GetBounds(double bounds[4]) override; /** - * Set the selection criteria on the given axis in normalized space (0.0 - 1.0). + * Set the selection criteria on the given axis in normalized space (0.0 - 1.0) for a specific + * range. + */ + bool SetSelectionRange(int axis, float low, float high); + + /** + * Set the selection criteria on the given axis in normalized space [0.0 ; 1.0] + * axisSelection should be a list like {minRange1, maxRange1, minRange2, maxRange2, ...} */ - bool SetSelectionRange(int Axis, float low, float high); + bool SetSelectionRange(int axis, std::vector axisSelection); /** * Reset the selection criteria for the chart. diff --git a/Documentation/release/dev/multiple-selection-in-parallel-coordinates-view.md b/Documentation/release/dev/multiple-selection-in-parallel-coordinates-view.md new file mode 100644 index 000000000000..99ad6786a896 --- /dev/null +++ b/Documentation/release/dev/multiple-selection-in-parallel-coordinates-view.md @@ -0,0 +1,4 @@ +## Multiple Selection in the parallel coordinates view + +Add support for multiple selection on the same axis in parallel coordinates chart. +Support for addition, subtraction and toggle selection mode has also been added. -- GitLab From 4160a19d522bbcd32d3e08b8744ac8ad4c58a11d Mon Sep 17 00:00:00 2001 From: Tiffany Chhim Date: Wed, 11 May 2022 16:30:21 +0200 Subject: [PATCH 0152/1015] Move getter for window initialization from OpenXR to VR module Also set Initialized state to false in OpenXR when the OpenXRManager fails to instantiate. --- Rendering/OpenXR/vtkOpenXRRenderWindow.cxx | 2 ++ Rendering/OpenXR/vtkOpenXRRenderWindow.h | 7 ------- Rendering/VR/vtkVRRenderWindow.h | 5 +++++ 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx b/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx index 3de85ada3dda..4e950911a5e1 100644 --- a/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx +++ b/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx @@ -122,6 +122,8 @@ void vtkOpenXRRenderWindow::Initialize() vtkOpenXRManager* xrManager = vtkOpenXRManager::GetInstance(); if (!xrManager->Initialize(this->HelperWindow)) { + // Set to false because the above init of the HelperWindow sets it to true + this->Initialized = false; vtkErrorMacro(<< "Failed to initialize OpenXRManager"); return; } diff --git a/Rendering/OpenXR/vtkOpenXRRenderWindow.h b/Rendering/OpenXR/vtkOpenXRRenderWindow.h index 425c76ef3208..8615f359d1c8 100644 --- a/Rendering/OpenXR/vtkOpenXRRenderWindow.h +++ b/Rendering/OpenXR/vtkOpenXRRenderWindow.h @@ -133,13 +133,6 @@ public: */ vtkTypeBool GetEventPending() override { return 0; } - //@{ - /** - * True if the window has been initialized successfully. - */ - vtkGetMacro(Initialized, bool); - //@} - //@{ /** * Set the active state (active: true / inactive: false) of the specified hand. diff --git a/Rendering/VR/vtkVRRenderWindow.h b/Rendering/VR/vtkVRRenderWindow.h index e799b416b624..9b30804760da 100644 --- a/Rendering/VR/vtkVRRenderWindow.h +++ b/Rendering/VR/vtkVRRenderWindow.h @@ -386,6 +386,11 @@ public: */ virtual void UpdateHMDMatrixPose(){}; + /** + * Get whether the window has been initialized successfully. + */ + vtkGetMacro(Initialized, bool); + protected: vtkVRRenderWindow(); ~vtkVRRenderWindow() override; -- GitLab From ea0daecf796215a00086d9a644417e2b41d3795d Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Thu, 12 May 2022 00:01:37 -0400 Subject: [PATCH 0153/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 8bbed992dd68..c3311bc48f19 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220511) +set(VTK_BUILD_VERSION 20220512) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From e229872f0955fd03a159a8a1d23988896f2666a3 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 23:45:36 -0400 Subject: [PATCH 0154/1015] vtkFunctionParser: Remove costly Modified calls There are many modified calls and vtkArrayCalculator is executed using many threads there is a major communication overhead. Even when using only 1 thread, incrementing atomic variables very often is costly. Modified calls are preserved only inside the SetVector/Scalar with string. --- Common/Misc/vtkFunctionParser.cxx | 36 +++++-------------------------- Common/Misc/vtkFunctionParser.h | 2 -- 2 files changed, 5 insertions(+), 33 deletions(-) diff --git a/Common/Misc/vtkFunctionParser.cxx b/Common/Misc/vtkFunctionParser.cxx index 51b435de8530..94b77059852d 100644 --- a/Common/Misc/vtkFunctionParser.cxx +++ b/Common/Misc/vtkFunctionParser.cxx @@ -34,8 +34,6 @@ vtkFunctionParser::vtkFunctionParser() this->StackSize = 0; this->StackPointer = 0; - this->EvaluateMTime.Modified(); - this->VariableMTime.Modified(); this->ParseMTime.Modified(); this->FunctionMTime.Modified(); this->CheckMTime.Modified(); @@ -844,19 +842,15 @@ bool vtkFunctionParser::Evaluate() } this->StackPointer = stackPosition; - this->EvaluateMTime.Modified(); - return true; } //------------------------------------------------------------------------------ int vtkFunctionParser::IsScalarResult() { - if (this->VariableMTime.GetMTime() > this->EvaluateMTime.GetMTime() || - this->FunctionMTime.GetMTime() > this->EvaluateMTime.GetMTime()) + if (!this->Evaluate()) { - if (!this->Evaluate()) - return 0; + return 0; } return (this->StackPointer == 0); } @@ -874,11 +868,9 @@ double vtkFunctionParser::GetScalarResult() int vtkFunctionParser::IsVectorResult() { - if (this->VariableMTime.GetMTime() > this->EvaluateMTime.GetMTime() || - this->FunctionMTime.GetMTime() > this->EvaluateMTime.GetMTime()) + if (!this->Evaluate()) { - if (!this->Evaluate()) - return 0; + return 0; } return (this->StackPointer == 2); } @@ -954,7 +946,6 @@ void vtkFunctionParser::SetScalarVariableValue(const char* inVariableName, doubl if (this->ScalarVariableValues[i] != value) { this->ScalarVariableValues[i] = value; - this->VariableMTime.Modified(); this->Modified(); } delete[] variableName; @@ -963,7 +954,6 @@ void vtkFunctionParser::SetScalarVariableValue(const char* inVariableName, doubl } this->ScalarVariableValues.push_back(value); this->ScalarVariableNames.emplace_back(variableName); - this->VariableMTime.Modified(); this->Modified(); delete[] variableName; } @@ -979,9 +969,7 @@ void vtkFunctionParser::SetScalarVariableValue(int i, double value) if (this->ScalarVariableValues[i] != value) { this->ScalarVariableValues[i] = value; - this->VariableMTime.Modified(); } - this->Modified(); } //------------------------------------------------------------------------------ @@ -1029,7 +1017,6 @@ void vtkFunctionParser::SetVectorVariableValue( this->VectorVariableValues[i][0] = xValue; this->VectorVariableValues[i][1] = yValue; this->VectorVariableValues[i][2] = zValue; - this->VariableMTime.Modified(); this->Modified(); } delete[] variableName; @@ -1044,7 +1031,6 @@ void vtkFunctionParser::SetVectorVariableValue( val[2] = zValue; this->VectorVariableValues.push_back(val); - this->VariableMTime.Modified(); this->Modified(); delete[] variableName; } @@ -1062,8 +1048,6 @@ void vtkFunctionParser::SetVectorVariableValue(int i, double xValue, double yVal this->VectorVariableValues[i][0] = xValue; this->VectorVariableValues[i][1] = yValue; this->VectorVariableValues[i][2] = zValue; - this->VariableMTime.Modified(); - this->Modified(); } } @@ -2202,14 +2186,6 @@ vtkMTimeType vtkFunctionParser::GetMTime() { vtkMTimeType mTime = this->Superclass::GetMTime(); - if (this->EvaluateMTime > mTime) - { - mTime = this->EvaluateMTime; - } - if (this->VariableMTime > mTime) - { - mTime = this->VariableMTime; - } if (this->ParseMTime > mTime) { mTime = this->ParseMTime; @@ -2249,9 +2225,7 @@ void vtkFunctionParser::PrintSelf(ostream& os, vtkIndent indent) << this->GetVectorVariableValue(i)[2] << ")" << endl; } - if (this->EvaluateMTime.GetMTime() > this->FunctionMTime.GetMTime() && - this->EvaluateMTime.GetMTime() > this->VariableMTime.GetMTime() && - (this->StackPointer == 0 || this->StackPointer == 2)) + if (this->Function != nullptr && (this->StackPointer == 0 || this->StackPointer == 2)) { if (this->StackPointer == 0) { diff --git a/Common/Misc/vtkFunctionParser.h b/Common/Misc/vtkFunctionParser.h index 26e93a1d2ac2..2235252bce97 100644 --- a/Common/Misc/vtkFunctionParser.h +++ b/Common/Misc/vtkFunctionParser.h @@ -444,8 +444,6 @@ protected: vtkTimeStamp FunctionMTime; vtkTimeStamp ParseMTime; - vtkTimeStamp VariableMTime; - vtkTimeStamp EvaluateMTime; vtkTimeStamp CheckMTime; vtkTypeBool ReplaceInvalidValues; -- GitLab From 4f53705032d0fb25e32edc55f9377ea001de3907 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 23:46:58 -0400 Subject: [PATCH 0155/1015] vtkExprTkFunctionParser: Remove costly Modified calls There are many modified calls and vtkArrayCalculator is executed using many threads there is a major communication overhead. Even when using only 1 thread, incrementing atomic variables very often is costly. Modified calls are preserved only inside the SetVector/Scalar with string. --- Common/Misc/vtkExprTkFunctionParser.cxx | 37 ++++--------------------- Common/Misc/vtkExprTkFunctionParser.h | 2 -- 2 files changed, 5 insertions(+), 34 deletions(-) diff --git a/Common/Misc/vtkExprTkFunctionParser.cxx b/Common/Misc/vtkExprTkFunctionParser.cxx index 8a3bdcaa2bb4..ab79b83c3f14 100644 --- a/Common/Misc/vtkExprTkFunctionParser.cxx +++ b/Common/Misc/vtkExprTkFunctionParser.cxx @@ -331,8 +331,6 @@ vtkStandardNewMacro(vtkExprTkFunctionParser); //------------------------------------------------------------------------------ vtkExprTkFunctionParser::vtkExprTkFunctionParser() { - this->EvaluateMTime.Modified(); - this->VariableMTime.Modified(); this->ParseMTime.Modified(); this->FunctionMTime.Modified(); @@ -788,19 +786,15 @@ bool vtkExprTkFunctionParser::Evaluate() return false; } - this->EvaluateMTime.Modified(); - return true; } //------------------------------------------------------------------------------ int vtkExprTkFunctionParser::IsScalarResult() { - if (this->VariableMTime.GetMTime() > this->EvaluateMTime.GetMTime() || - this->FunctionMTime.GetMTime() > this->EvaluateMTime.GetMTime()) + if (!this->Evaluate()) { - if (!this->Evaluate()) - return 0; + return 0; } return (this->ResultType == ExprTkResultType::e_scalar); } @@ -819,11 +813,9 @@ double vtkExprTkFunctionParser::GetScalarResult() //------------------------------------------------------------------------------ int vtkExprTkFunctionParser::IsVectorResult() { - if (this->VariableMTime.GetMTime() > this->EvaluateMTime.GetMTime() || - this->FunctionMTime.GetMTime() > this->EvaluateMTime.GetMTime()) + if (!this->Evaluate()) { - if (!this->Evaluate()) - return 0; + return 0; } return (this->ResultType == ExprTkResultType::e_vector); } @@ -885,7 +877,6 @@ void vtkExprTkFunctionParser::SetScalarVariableValue( if (*this->ScalarVariableValues[i] != value) { *this->ScalarVariableValues[i] = value; - this->VariableMTime.Modified(); this->Modified(); } return; @@ -908,7 +899,6 @@ void vtkExprTkFunctionParser::SetScalarVariableValue( this->OriginalScalarVariableNames.push_back(inVariableName); this->UsedScalarVariableNames.push_back(variableName); - this->VariableMTime.Modified(); this->Modified(); } else @@ -929,9 +919,7 @@ void vtkExprTkFunctionParser::SetScalarVariableValue(int i, double value) if (*this->ScalarVariableValues[i] != value) { *this->ScalarVariableValues[i] = value; - this->VariableMTime.Modified(); } - this->Modified(); } //------------------------------------------------------------------------------ @@ -991,7 +979,6 @@ void vtkExprTkFunctionParser::SetVectorVariableValue( (*this->VectorVariableValues[i])[0] = xValue; (*this->VectorVariableValues[i])[1] = yValue; (*this->VectorVariableValues[i])[2] = zValue; - this->VariableMTime.Modified(); this->Modified(); } return; @@ -1017,8 +1004,6 @@ void vtkExprTkFunctionParser::SetVectorVariableValue( this->VectorVariableValues.push_back(vector); this->OriginalVectorVariableNames.push_back(inVariableName); this->UsedVectorVariableNames.push_back(variableName); - - this->VariableMTime.Modified(); this->Modified(); } else @@ -1042,8 +1027,6 @@ void vtkExprTkFunctionParser::SetVectorVariableValue( (*this->VectorVariableValues[i])[0] = xValue; (*this->VectorVariableValues[i])[1] = yValue; (*this->VectorVariableValues[i])[2] = zValue; - this->VariableMTime.Modified(); - this->Modified(); } } @@ -1115,14 +1098,6 @@ vtkMTimeType vtkExprTkFunctionParser::GetMTime() { vtkMTimeType mTime = this->Superclass::GetMTime(); - if (this->EvaluateMTime > mTime) - { - mTime = this->EvaluateMTime; - } - if (this->VariableMTime > mTime) - { - mTime = this->VariableMTime; - } if (this->ParseMTime > mTime) { mTime = this->ParseMTime; @@ -1164,9 +1139,7 @@ void vtkExprTkFunctionParser::PrintSelf(ostream& os, vtkIndent indent) << endl; } - if (this->EvaluateMTime.GetMTime() > this->FunctionMTime.GetMTime() && - this->EvaluateMTime.GetMTime() > this->VariableMTime.GetMTime() && - this->ExprTkTools->Expression.results().count() > 0) + if (!this->Function.empty() && this->ExprTkTools->Expression.results().count() > 0) { if (this->ResultType == ExprTkResultType::e_scalar) { diff --git a/Common/Misc/vtkExprTkFunctionParser.h b/Common/Misc/vtkExprTkFunctionParser.h index 4370184a4735..3788d96c635a 100644 --- a/Common/Misc/vtkExprTkFunctionParser.h +++ b/Common/Misc/vtkExprTkFunctionParser.h @@ -348,8 +348,6 @@ protected: vtkTimeStamp FunctionMTime; vtkTimeStamp ParseMTime; - vtkTimeStamp VariableMTime; - vtkTimeStamp EvaluateMTime; vtkTypeBool ReplaceInvalidValues; double ReplacementValue; -- GitLab From eb1394552e744d838218bac39dc2e903c5b82922 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 23:49:15 -0400 Subject: [PATCH 0156/1015] vtkArrayCalculator: Add missing seperators --- Filters/Core/vtkArrayCalculator.cxx | 32 +++++++++++++++++++++++++++-- 1 file changed, 30 insertions(+), 2 deletions(-) diff --git a/Filters/Core/vtkArrayCalculator.cxx b/Filters/Core/vtkArrayCalculator.cxx index ea28e37d4e32..beaaa5aeb232 100644 --- a/Filters/Core/vtkArrayCalculator.cxx +++ b/Filters/Core/vtkArrayCalculator.cxx @@ -34,8 +34,10 @@ #include "vtkTable.h" #include "vtkUnstructuredGrid.h" +//------------------------------------------------------------------------------ vtkStandardNewMacro(vtkArrayCalculator); +//------------------------------------------------------------------------------ vtkArrayCalculator::vtkArrayCalculator() { this->Function = nullptr; @@ -62,6 +64,7 @@ vtkArrayCalculator::vtkArrayCalculator() this->ResultArrayType = VTK_DOUBLE; } +//------------------------------------------------------------------------------ vtkArrayCalculator::~vtkArrayCalculator() { delete[] this->Function; @@ -82,6 +85,7 @@ vtkArrayCalculator::~vtkArrayCalculator() this->SelectedCoordinateVectorComponents.clear(); } +//------------------------------------------------------------------------------ int vtkArrayCalculator::FillInputPortInformation(int vtkNotUsed(port), vtkInformation* info) { info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkDataSet"); @@ -92,13 +96,14 @@ int vtkArrayCalculator::FillInputPortInformation(int vtkNotUsed(port), vtkInform return 1; } +//------------------------------------------------------------------------------ enum ResultType { SCALAR_RESULT, VECTOR_RESULT } resultType = SCALAR_RESULT; -template +//------------------------------------------------------------------------------ class vtkArrayCalculatorFunctor { private: @@ -498,7 +503,7 @@ int vtkArrayCalculator::ProcessDataObject(vtkDataObject* input, vtkDataObject* o else { output->ShallowCopy(input); - // Error occurred in vtkFunctionParser. + // Error occurred in FunctionParser. vtkWarningMacro( "An error occurred when parsing the calculator's function. See previous errors."); return 1; @@ -699,6 +704,7 @@ int vtkArrayCalculator::ProcessDataObject(vtkDataObject* input, vtkDataObject* o return 1; } +//------------------------------------------------------------------------------ int vtkArrayCalculator::RequestData(vtkInformation* vtkNotUsed(request), vtkInformationVector** inputVector, vtkInformationVector* outputVector) { @@ -765,6 +771,7 @@ int vtkArrayCalculator::RequestData(vtkInformation* vtkNotUsed(request), } } +//------------------------------------------------------------------------------ int vtkArrayCalculator::GetAttributeTypeFromInput(vtkDataObject* input) { vtkDataSet* dsInput = vtkDataSet::SafeDownCast(input); @@ -790,6 +797,7 @@ int vtkArrayCalculator::GetAttributeTypeFromInput(vtkDataObject* input) return attribute; } +//------------------------------------------------------------------------------ std::string vtkArrayCalculator::CheckValidVariableName(const char* variableName) { // check if it's sanitized or enclosed in quotes @@ -807,6 +815,7 @@ std::string vtkArrayCalculator::CheckValidVariableName(const char* variableName) } } +//------------------------------------------------------------------------------ void vtkArrayCalculator::AddScalarArrayName(const char* arrayName, int component) { if (!arrayName) @@ -832,6 +841,7 @@ void vtkArrayCalculator::AddScalarArrayName(const char* arrayName, int component this->SelectedScalarComponents.push_back(component); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::AddVectorArrayName( const char* arrayName, int component0, int component1, int component2) { @@ -865,6 +875,7 @@ void vtkArrayCalculator::AddVectorArrayName( this->SelectedVectorComponents.push_back(components); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::AddScalarVariable( const char* variableName, const char* arrayName, int component) { @@ -895,6 +906,7 @@ void vtkArrayCalculator::AddScalarVariable( this->SelectedScalarComponents.push_back(component); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::AddVectorVariable( const char* variableName, const char* arrayName, int component0, int component1, int component2) { @@ -932,6 +944,7 @@ void vtkArrayCalculator::AddVectorVariable( this->SelectedVectorComponents.push_back(components); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::AddCoordinateScalarVariable(const char* variableName, int component) { if (!variableName) @@ -950,6 +963,7 @@ void vtkArrayCalculator::AddCoordinateScalarVariable(const char* variableName, i this->SelectedCoordinateScalarComponents.push_back(component); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::AddCoordinateVectorVariable( const char* variableName, int component0, int component1, int component2) { @@ -974,6 +988,7 @@ void vtkArrayCalculator::AddCoordinateVectorVariable( this->SelectedCoordinateVectorComponents.push_back(components); } +//------------------------------------------------------------------------------ const char* vtkArrayCalculator::GetAttributeTypeAsString() { switch (this->AttributeType) @@ -994,6 +1009,7 @@ const char* vtkArrayCalculator::GetAttributeTypeAsString() } } +//------------------------------------------------------------------------------ void vtkArrayCalculator::RemoveScalarVariables() { this->ScalarArrayNames.clear(); @@ -1001,6 +1017,7 @@ void vtkArrayCalculator::RemoveScalarVariables() this->SelectedScalarComponents.clear(); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::RemoveVectorVariables() { this->VectorArrayNames.clear(); @@ -1008,18 +1025,21 @@ void vtkArrayCalculator::RemoveVectorVariables() this->SelectedVectorComponents.clear(); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::RemoveCoordinateScalarVariables() { this->CoordinateScalarVariableNames.clear(); this->SelectedCoordinateScalarComponents.clear(); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::RemoveCoordinateVectorVariables() { this->CoordinateVectorVariableNames.clear(); this->SelectedCoordinateVectorComponents.clear(); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::RemoveAllVariables() { this->RemoveScalarVariables(); @@ -1028,6 +1048,7 @@ void vtkArrayCalculator::RemoveAllVariables() this->RemoveCoordinateVectorVariables(); } +//------------------------------------------------------------------------------ std::string vtkArrayCalculator::GetScalarArrayName(int i) { if (i < static_cast(this->ScalarArrayNames.size())) @@ -1037,6 +1058,7 @@ std::string vtkArrayCalculator::GetScalarArrayName(int i) return std::string(); } +//------------------------------------------------------------------------------ std::string vtkArrayCalculator::GetVectorArrayName(int i) { if (i < static_cast(this->VectorArrayNames.size())) @@ -1046,6 +1068,7 @@ std::string vtkArrayCalculator::GetVectorArrayName(int i) return std::string(); } +//------------------------------------------------------------------------------ std::string vtkArrayCalculator::GetScalarVariableName(int i) { if (i < static_cast(this->ScalarVariableNames.size())) @@ -1055,6 +1078,7 @@ std::string vtkArrayCalculator::GetScalarVariableName(int i) return std::string(); } +//------------------------------------------------------------------------------ std::string vtkArrayCalculator::GetVectorVariableName(int i) { if (i < static_cast(this->VectorVariableNames.size())) @@ -1064,6 +1088,7 @@ std::string vtkArrayCalculator::GetVectorVariableName(int i) return std::string(); } +//------------------------------------------------------------------------------ int vtkArrayCalculator::GetSelectedScalarComponent(int i) { if (i < static_cast(this->ScalarArrayNames.size())) @@ -1073,6 +1098,7 @@ int vtkArrayCalculator::GetSelectedScalarComponent(int i) return -1; } +//------------------------------------------------------------------------------ vtkTuple vtkArrayCalculator::GetSelectedVectorComponents(int i) { if (i < static_cast(this->VectorArrayNames.size())) @@ -1082,11 +1108,13 @@ vtkTuple vtkArrayCalculator::GetSelectedVectorComponents(int i) return {}; } +//------------------------------------------------------------------------------ vtkDataSet* vtkArrayCalculator::GetDataSetOutput() { return vtkDataSet::SafeDownCast(this->GetOutput()); } +//------------------------------------------------------------------------------ void vtkArrayCalculator::PrintSelf(ostream& os, vtkIndent indent) { this->Superclass::PrintSelf(os, indent); -- GitLab From 4f84084e884325dd1b0ea84554e04c51a0023129 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 23:50:02 -0400 Subject: [PATCH 0157/1015] vtkArrayCalculator: Use ShallowCopy instead of DeepCopy --- Filters/Core/vtkArrayCalculator.cxx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Filters/Core/vtkArrayCalculator.cxx b/Filters/Core/vtkArrayCalculator.cxx index beaaa5aeb232..16293693573a 100644 --- a/Filters/Core/vtkArrayCalculator.cxx +++ b/Filters/Core/vtkArrayCalculator.cxx @@ -732,7 +732,7 @@ int vtkArrayCalculator::RequestData(vtkInformation* vtkNotUsed(request), { vtkDataObject* inputDataObject = cdIter->GetCurrentDataObject(); vtkDataObject* outputDataObject = inputDataObject->NewInstance(); - outputDataObject->DeepCopy(inputDataObject); + outputDataObject->ShallowCopy(inputDataObject); outputCD->SetDataSet(cdIter, outputDataObject); outputDataObject->FastDelete(); -- GitLab From 9be085f6b80d40021993c5b28b02a961f104f0f6 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 23:52:40 -0400 Subject: [PATCH 0158/1015] vtkArrayCalculator: Save array sizes --- Filters/Core/vtkArrayCalculator.cxx | 33 ++++++++++++++++++----------- 1 file changed, 21 insertions(+), 12 deletions(-) diff --git a/Filters/Core/vtkArrayCalculator.cxx b/Filters/Core/vtkArrayCalculator.cxx index 16293693573a..dd7f1c2e7e14 100644 --- a/Filters/Core/vtkArrayCalculator.cxx +++ b/Filters/Core/vtkArrayCalculator.cxx @@ -128,6 +128,11 @@ private: std::vector SelectedCoordinateScalarComponents; std::vector> SelectedCoordinateVectorComponents; + int ScalarArrayNamesSize; + int VectorArrayNamesSize; + int CoordinateScalarVariableNamesSize; + int CoordinateVectorVariableNamesSize; + std::vector ScalarArrays; std::vector VectorArrays; std::vector ScalarArrayIndices; @@ -172,6 +177,10 @@ public: , CoordinateVectorVariableNames(coordinateVectorVariableNames) , SelectedCoordinateScalarComponents(selectedCoordinateScalarComponents) , SelectedCoordinateVectorComponents(selectedCoordinateVectorComponents) + , ScalarArrayNamesSize(static_cast(scalarArrayNames.size())) + , VectorArrayNamesSize(static_cast(vectorArrayNames.size())) + , CoordinateScalarVariableNamesSize(static_cast(coordinateScalarVariableNames.size())) + , CoordinateVectorVariableNamesSize(static_cast(coordinateVectorVariableNames.size())) , ScalarArrays(scalarArrays) , VectorArrays(vectorArrays) , ScalarArrayIndices(scalarArrayIndices) @@ -186,6 +195,7 @@ public: void Initialize() { auto& functionParser = FunctionParser.Local(); + int i; functionParser = vtkSmartPointer::New(); functionParser->SetFunction(this->Function); @@ -194,7 +204,7 @@ public: // Tell the parser about scalar arrays vtkDataArray* currentArray; - for (size_t i = 0; i < this->ScalarArrayNames.size(); i++) + for (i = 0; i < this->ScalarArrayNamesSize; i++) { currentArray = this->InFD->GetArray(this->ScalarArrayNames[i].c_str()); if (currentArray) @@ -223,7 +233,7 @@ public: } // Tell the parser about vector arrays - for (size_t i = 0; i < this->VectorArrayNames.size(); i++) + for (i = 0; i < this->VectorArrayNamesSize; i++) { currentArray = this->InFD->GetArray(this->VectorArrayNames[i].c_str()); if (currentArray) @@ -259,7 +269,7 @@ public: if (this->AttributeType == vtkDataObject::POINT || AttributeType == vtkDataObject::VERTEX) { double pt[3]; - for (size_t i = 0; i < this->CoordinateScalarVariableNames.size(); i++) + for (i = 0; i < this->CoordinateScalarVariableNamesSize; i++) { if (this->DsInput) { @@ -273,7 +283,7 @@ public: this->CoordinateScalarVariableNames[i], pt[this->SelectedCoordinateScalarComponents[i]]); } - for (size_t i = 0; i < this->CoordinateVectorVariableNames.size(); i++) + for (i = 0; i < this->CoordinateVectorVariableNamesSize; i++) { if (this->DsInput) { @@ -295,10 +305,11 @@ public: { auto& functionParser = FunctionParser.Local(); vtkDataArray* currentArray; + int j = 0; for (vtkIdType i = begin; i < end; i++) { - for (size_t j = 0; j < this->ScalarArrayNames.size(); j++) + for (j = 0; j < this->ScalarArrayNamesSize; j++) { if ((currentArray = this->ScalarArrays[j])) { @@ -306,7 +317,7 @@ public: currentArray->GetComponent(i, this->SelectedScalarComponents[j])); } } - for (size_t j = 0; j < this->VectorArrayNames.size(); j++) + for (j = 0; j < this->VectorArrayNamesSize; j++) { if ((currentArray = this->VectorArrays[j])) { @@ -328,16 +339,14 @@ public: { this->GraphInput->GetPoint(i, pt); } - for (size_t j = 0; j < this->CoordinateScalarVariableNames.size(); j++) + for (j = 0; j < this->CoordinateScalarVariableNamesSize; j++) { functionParser->SetScalarVariableValue( - static_cast(j + this->ScalarArrayNames.size()), - pt[this->SelectedCoordinateScalarComponents[j]]); + j + this->ScalarArrayNamesSize, pt[this->SelectedCoordinateScalarComponents[j]]); } - for (size_t j = 0; j < this->CoordinateVectorVariableNames.size(); j++) + for (j = 0; j < this->CoordinateVectorVariableNamesSize; j++) { - functionParser->SetVectorVariableValue( - static_cast(j + this->VectorArrayNames.size()), + functionParser->SetVectorVariableValue(j + this->VectorArrayNamesSize, pt[this->SelectedCoordinateVectorComponents[j][0]], pt[this->SelectedCoordinateVectorComponents[j][1]], pt[this->SelectedCoordinateVectorComponents[j][2]]); -- GitLab From 1dd67e56613a5644daf2d9d38fa7b9c2f1f57551 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 23:56:48 -0400 Subject: [PATCH 0159/1015] vtkArrayCalculator: Use 1 GetTuple instead of 3 GetComponent Also allocate a tuple once. GetComponent would allocate/deallocate internally a tuple at every call. --- Filters/Core/vtkArrayCalculator.cxx | 41 ++++++++++++++++++++++------- 1 file changed, 31 insertions(+), 10 deletions(-) diff --git a/Filters/Core/vtkArrayCalculator.cxx b/Filters/Core/vtkArrayCalculator.cxx index dd7f1c2e7e14..8763af36d4c9 100644 --- a/Filters/Core/vtkArrayCalculator.cxx +++ b/Filters/Core/vtkArrayCalculator.cxx @@ -141,6 +141,8 @@ private: vtkSmartPointer ResultArray; // // thread local vtkSMPThreadLocal> FunctionParser; + vtkSMPThreadLocal> Tuple; + int MaxTupleSize; public: explicit vtkArrayCalculatorFunctor(vtkDataSet* dsInput, vtkGraph* graphInput, @@ -187,6 +189,18 @@ public: , VectorArrayIndices(vectorArrayIndices) , ResultArray(resultArray) { + // find the maximum tuple size + this->MaxTupleSize = 3; + for (int i = 0; i < this->ScalarArrayNamesSize; i++) + { + this->MaxTupleSize = std::max(this->MaxTupleSize, + this->InFD->GetArray(this->ScalarArrayNames[i].c_str())->GetNumberOfComponents()); + } + for (int i = 0; i < this->VectorArrayNamesSize; i++) + { + this->MaxTupleSize = std::max(this->MaxTupleSize, + this->InFD->GetArray(this->VectorArrayNames[i].c_str())->GetNumberOfComponents()); + } } /** @@ -195,6 +209,8 @@ public: void Initialize() { auto& functionParser = FunctionParser.Local(); + this->Tuple.Local().resize(static_cast(this->MaxTupleSize)); + auto tuple = this->Tuple.Local().data(); int i; functionParser = vtkSmartPointer::New(); @@ -211,8 +227,9 @@ public: { if (currentArray->GetNumberOfComponents() > this->SelectedScalarComponents[i]) { - functionParser->SetScalarVariableValue(this->ScalarVariableNames[i], - currentArray->GetComponent(0, this->SelectedScalarComponents[i])); + currentArray->GetTuple(0, tuple); + functionParser->SetScalarVariableValue( + this->ScalarVariableNames[i], tuple[this->SelectedScalarComponents[i]]); } else { @@ -242,10 +259,11 @@ public: (currentArray->GetNumberOfComponents() > this->SelectedVectorComponents[i][1]) && (currentArray->GetNumberOfComponents() > this->SelectedVectorComponents[i][2])) { + currentArray->GetTuple(0, tuple); functionParser->SetVectorVariableValue(this->VectorVariableNames[i], - currentArray->GetComponent(0, this->SelectedVectorComponents[i][0]), - currentArray->GetComponent(0, this->SelectedVectorComponents[i][1]), - currentArray->GetComponent(0, this->SelectedVectorComponents[i][2])); + tuple[this->SelectedVectorComponents[i][0]], + tuple[this->SelectedVectorComponents[i][1]], + tuple[this->SelectedVectorComponents[i][2]]); } else { @@ -304,6 +322,7 @@ public: void operator()(vtkIdType begin, vtkIdType end) { auto& functionParser = FunctionParser.Local(); + auto tuple = this->Tuple.Local().data(); vtkDataArray* currentArray; int j = 0; @@ -313,18 +332,20 @@ public: { if ((currentArray = this->ScalarArrays[j])) { - functionParser->SetScalarVariableValue(this->ScalarArrayIndices[j], - currentArray->GetComponent(i, this->SelectedScalarComponents[j])); + currentArray->GetTuple(i, tuple); + functionParser->SetScalarVariableValue( + this->ScalarArrayIndices[j], tuple[this->SelectedScalarComponents[j]]); } } for (j = 0; j < this->VectorArrayNamesSize; j++) { if ((currentArray = this->VectorArrays[j])) { + currentArray->GetTuple(i, tuple); functionParser->SetVectorVariableValue(this->VectorArrayIndices[j], - currentArray->GetComponent(i, this->SelectedVectorComponents[j][0]), - currentArray->GetComponent(i, this->SelectedVectorComponents[j][1]), - currentArray->GetComponent(i, this->SelectedVectorComponents[j][2])); + tuple[this->SelectedVectorComponents[j][0]], + tuple[this->SelectedVectorComponents[j][1]], + tuple[this->SelectedVectorComponents[j][2]]); } } if (this->AttributeType == vtkDataObject::POINT || -- GitLab From a82b4d717d2fde355bdd485026ea369ebd7b000f Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 10 May 2022 23:58:51 -0400 Subject: [PATCH 0160/1015] vtkArrayCalculator: Use Dispatch on result array --- Filters/Core/vtkArrayCalculator.cxx | 83 +++++++++++++++++++++++------ 1 file changed, 66 insertions(+), 17 deletions(-) diff --git a/Filters/Core/vtkArrayCalculator.cxx b/Filters/Core/vtkArrayCalculator.cxx index 8763af36d4c9..d5d7c0ff8afd 100644 --- a/Filters/Core/vtkArrayCalculator.cxx +++ b/Filters/Core/vtkArrayCalculator.cxx @@ -14,6 +14,7 @@ =========================================================================*/ #include "vtkArrayCalculator.h" +#include "vtkArrayDispatch.h" #include "vtkCellData.h" #include "vtkCompositeDataIterator.h" #include "vtkCompositeDataSet.h" @@ -104,6 +105,7 @@ enum ResultType } resultType = SCALAR_RESULT; //------------------------------------------------------------------------------ +template class vtkArrayCalculatorFunctor { private: @@ -138,7 +140,8 @@ private: std::vector ScalarArrayIndices; std::vector VectorArrayIndices; - vtkSmartPointer ResultArray; + TResultArray* ResultArray; + // // thread local vtkSMPThreadLocal> FunctionParser; vtkSMPThreadLocal> Tuple; @@ -160,7 +163,7 @@ public: const std::vector>& selectedCoordinateVectorComponents, const std::vector& scalarArrays, const std::vector& vectorArrays, const std::vector& scalarArrayIndices, const std::vector& vectorArrayIndices, - vtkSmartPointer& resultArray) + TResultArray* resultArray) : DsInput(dsInput) , GraphInput(graphInput) , InFD(inFD) @@ -321,12 +324,13 @@ public: void operator()(vtkIdType begin, vtkIdType end) { + auto resultArrayItr = vtk::DataArrayTupleRange(this->ResultArray, begin, end).begin(); auto& functionParser = FunctionParser.Local(); auto tuple = this->Tuple.Local().data(); vtkDataArray* currentArray; int j = 0; - for (vtkIdType i = begin; i < end; i++) + for (vtkIdType i = begin; i < end; i++, resultArrayItr++) { for (j = 0; j < this->ScalarArrayNamesSize; j++) { @@ -375,12 +379,14 @@ public: } if (resultType == SCALAR_RESULT) { - double scalarResult = functionParser->GetScalarResult(); - this->ResultArray->SetTuple(i, &scalarResult); + (*resultArrayItr)[0] = functionParser->GetScalarResult(); } else { - this->ResultArray->SetTuple(i, functionParser->GetVectorResult()); + auto result = functionParser->GetVectorResult(); + (*resultArrayItr)[0] = result[0]; + (*resultArrayItr)[1] = result[1]; + (*resultArrayItr)[2] = result[2]; } } } @@ -388,6 +394,42 @@ public: void Reduce() {} }; +//------------------------------------------------------------------------------ +template +struct vtkArrayCalculatorWorker +{ + template + void operator()(TResultArray* resultArray, vtkDataSet* dsInput, vtkGraph* graphInput, + vtkDataSetAttributes* inFD, int attributeType, char* function, vtkTypeBool replaceInvalidValues, + double replacementValue, bool ignoreMissingArrays, + const std::vector& scalarArrayNames, + const std::vector& vectorArrayNames, + const std::vector& scalarVariableNames, + const std::vector& vectorVariableNames, + const std::vector& selectedScalarComponents, + std::vector> selectedVectorComponents, + const std::vector& coordinateScalarVariableNames, + const std::vector& coordinateVectorVariableNames, + const std::vector& selectedCoordinateScalarComponents, + const std::vector>& selectedCoordinateVectorComponents, + const std::vector& scalarArrays, const std::vector& vectorArrays, + const std::vector& scalarArrayIndices, const std::vector& vectorArrayIndices, + vtkIdType numTuples) + { + // Execute functor for all tuples + vtkArrayCalculatorFunctor arrayCalculatorFunctor(dsInput, + graphInput, inFD, attributeType, function, replaceInvalidValues, replacementValue, + ignoreMissingArrays, scalarArrayNames, vectorArrayNames, scalarVariableNames, + vectorVariableNames, selectedScalarComponents, selectedVectorComponents, + coordinateScalarVariableNames, coordinateVectorVariableNames, + selectedCoordinateScalarComponents, selectedCoordinateVectorComponents, scalarArrays, + vectorArrays, scalarArrayIndices, vectorArrayIndices, resultArray); + + vtkSMPTools::For(1, numTuples, arrayCalculatorFunctor); + } +}; + +//------------------------------------------------------------------------------ template int vtkArrayCalculator::ProcessDataObject(vtkDataObject* input, vtkDataObject* output) { @@ -652,17 +694,24 @@ int vtkArrayCalculator::ProcessDataObject(vtkDataObject* input, vtkDataObject* o } } - // Execute functor for all tuples - vtkArrayCalculatorFunctor arrayCalculatorFunctor(dsInput, graphInput, inFD, - attributeType, this->Function, this->ReplaceInvalidValues, this->ReplacementValue, - this->IgnoreMissingArrays, this->ScalarArrayNames, this->VectorArrayNames, - this->ScalarVariableNames, this->VectorVariableNames, this->SelectedScalarComponents, - this->SelectedVectorComponents, this->CoordinateScalarVariableNames, - this->CoordinateVectorVariableNames, this->SelectedCoordinateScalarComponents, - this->SelectedCoordinateVectorComponents, scalarArrays, vectorArrays, scalarArrayIndices, - vectorArrayIndices, resultArray); - - vtkSMPTools::For(1, numTuples, arrayCalculatorFunctor); + vtkArrayCalculatorWorker arrayCalculatorWorker; + if (!vtkArrayDispatch::Dispatch::Execute(resultArray.Get(), arrayCalculatorWorker, dsInput, + graphInput, inFD, attributeType, this->Function, this->ReplaceInvalidValues, + this->ReplacementValue, this->IgnoreMissingArrays, this->ScalarArrayNames, + this->VectorArrayNames, this->ScalarVariableNames, this->VectorVariableNames, + this->SelectedScalarComponents, this->SelectedVectorComponents, + this->CoordinateScalarVariableNames, this->CoordinateVectorVariableNames, + this->SelectedCoordinateScalarComponents, this->SelectedCoordinateVectorComponents, + scalarArrays, vectorArrays, scalarArrayIndices, vectorArrayIndices, numTuples)) + { + arrayCalculatorWorker(resultArray.Get(), dsInput, graphInput, inFD, attributeType, + this->Function, this->ReplaceInvalidValues, this->ReplacementValue, this->IgnoreMissingArrays, + this->ScalarArrayNames, this->VectorArrayNames, this->ScalarVariableNames, + this->VectorVariableNames, this->SelectedScalarComponents, this->SelectedVectorComponents, + this->CoordinateScalarVariableNames, this->CoordinateVectorVariableNames, + this->SelectedCoordinateScalarComponents, this->SelectedCoordinateVectorComponents, + scalarArrays, vectorArrays, scalarArrayIndices, vectorArrayIndices, numTuples); + } output->ShallowCopy(input); if (resultPoints) -- GitLab From ba3ff9777ad268af0f44a29467094a2303b889d8 Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Wed, 11 May 2022 13:57:50 -0400 Subject: [PATCH 0161/1015] Rollback removing of duplicate outputs in Statistics filters Output model has been removed in all ranks but zero so it doesn't diplay duplicate entries in the ParaView's spreadsheet. This can cause issues when assessing the data in nested statistics filters: ranks other than 0 have no model to compare to unless they fetch it back from rank 0. In order to fix the duplicate display in ParaView's Spreadsheet, the duplicate output will be removed at the ParaView level. Addresses paraview/paraview#20854 --- .../Cxx/TestPCorrelativeStatistics.cxx | 26 ++++--------------- .../Cxx/TestPDescriptiveStatistics.cxx | 26 ++++--------------- .../vtkPCorrelativeStatistics.cxx | 19 -------------- .../vtkPCorrelativeStatistics.h | 2 -- .../vtkPDescriptiveStatistics.cxx | 19 -------------- .../vtkPDescriptiveStatistics.h | 2 -- 6 files changed, 10 insertions(+), 84 deletions(-) diff --git a/Filters/ParallelStatistics/Testing/Cxx/TestPCorrelativeStatistics.cxx b/Filters/ParallelStatistics/Testing/Cxx/TestPCorrelativeStatistics.cxx index ee759abebf1e..08c24fdb54b6 100644 --- a/Filters/ParallelStatistics/Testing/Cxx/TestPCorrelativeStatistics.cxx +++ b/Filters/ParallelStatistics/Testing/Cxx/TestPCorrelativeStatistics.cxx @@ -142,29 +142,13 @@ int TestPCorrelativeStatistics(int argc, char* argv[]) auto outRefModel = vtkMultiBlockDataSet::SafeDownCast(refStats->GetOutputDataObject(1)); auto outRefTests = vtkTable::SafeDownCast(refStats->GetOutputDataObject(2)); - // Testing measured statistics. Rank other than 0 should not have any data. - if (myrank == 0) - { - auto outPrimaryTable = vtkTable::SafeDownCast(outModel->GetBlock(0)); - auto outRefPrimaryTable = vtkTable::SafeDownCast(outRefModel->GetBlock(0)); + auto outPrimaryTable = vtkTable::SafeDownCast(outModel->GetBlock(0)); + auto outRefPrimaryTable = vtkTable::SafeDownCast(outRefModel->GetBlock(0)); - if (!TablesAreSame(outPrimaryTable, outRefPrimaryTable)) - { - vtkLog(ERROR, "Measured statistics mismatch between single-process and multi-process."); - retVal = EXIT_FAILURE; - } - } - else + if (!TablesAreSame(outPrimaryTable, outRefPrimaryTable)) { - std::vector outputs = vtkCompositeDataSet::GetDataSets(outModel); - for (vtkTable* output : outputs) - { - if (output->GetNumberOfColumns()) - { - vtkLog(ERROR, "Output other than rank 0 has a non-empty output model."); - retVal = EXIT_FAILURE; - } - } + vtkLog(ERROR, "Measured statistics mismatch between single-process and multi-process."); + retVal = EXIT_FAILURE; } // Testing outData. diff --git a/Filters/ParallelStatistics/Testing/Cxx/TestPDescriptiveStatistics.cxx b/Filters/ParallelStatistics/Testing/Cxx/TestPDescriptiveStatistics.cxx index fcf89fec9342..3f7de92201a8 100644 --- a/Filters/ParallelStatistics/Testing/Cxx/TestPDescriptiveStatistics.cxx +++ b/Filters/ParallelStatistics/Testing/Cxx/TestPDescriptiveStatistics.cxx @@ -148,29 +148,13 @@ int TestPDescriptiveStatistics(int argc, char* argv[]) vtkLog(INFO, "Testing Model"); - // Testing measured statistics. Rank other than 0 should not have any data. - if (myrank == 0) - { - auto outPrimaryTable = vtkTable::SafeDownCast(outModel->GetBlock(0)); - auto outRefPrimaryTable = vtkTable::SafeDownCast(outRefModel->GetBlock(0)); + auto outPrimaryTable = vtkTable::SafeDownCast(outModel->GetBlock(0)); + auto outRefPrimaryTable = vtkTable::SafeDownCast(outRefModel->GetBlock(0)); - if (!TablesAreSame(outPrimaryTable, outRefPrimaryTable)) - { - vtkLog(ERROR, "Measured statistics mismatch between single-process and multi-process."); - retVal = EXIT_FAILURE; - } - } - else + if (!TablesAreSame(outPrimaryTable, outRefPrimaryTable)) { - std::vector outputs = vtkCompositeDataSet::GetDataSets(outModel); - for (vtkTable* output : outputs) - { - if (output->GetNumberOfColumns()) - { - vtkLog(ERROR, "Output other than rank 0 has a non-empty output model."); - retVal = EXIT_FAILURE; - } - } + vtkLog(ERROR, "Measured statistics mismatch between single-process and multi-process."); + retVal = EXIT_FAILURE; } vtkLog(INFO, "Testing Assess"); diff --git a/Filters/ParallelStatistics/vtkPCorrelativeStatistics.cxx b/Filters/ParallelStatistics/vtkPCorrelativeStatistics.cxx index 809ccf1df8b6..c05f37b33a2f 100644 --- a/Filters/ParallelStatistics/vtkPCorrelativeStatistics.cxx +++ b/Filters/ParallelStatistics/vtkPCorrelativeStatistics.cxx @@ -179,22 +179,3 @@ void vtkPCorrelativeStatistics::Test( this->Superclass::Test(inData, inMeta, outMeta); } - -//------------------------------------------------------------------------------ -int vtkPCorrelativeStatistics::RequestData( - vtkInformation* request, vtkInformationVector** inputVector, vtkInformationVector* outputVector) -{ - int retVal = this->Superclass::RequestData(request, inputVector, outputVector); - - if (this->Controller && this->Controller->GetLocalProcessId() != 0) - { - vtkMultiBlockDataSet* outModel = vtkMultiBlockDataSet::GetData(outputVector, OUTPUT_MODEL); - std::vector outputs = vtkCompositeDataSet::GetDataSets(outModel); - for (vtkDataObject* output : outputs) - { - output->Initialize(); - } - } - - return retVal; -} diff --git a/Filters/ParallelStatistics/vtkPCorrelativeStatistics.h b/Filters/ParallelStatistics/vtkPCorrelativeStatistics.h index 5dffbd1a16a4..055bc02db8fb 100644 --- a/Filters/ParallelStatistics/vtkPCorrelativeStatistics.h +++ b/Filters/ParallelStatistics/vtkPCorrelativeStatistics.h @@ -70,8 +70,6 @@ protected: vtkPCorrelativeStatistics(); ~vtkPCorrelativeStatistics() override; - int RequestData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) override; - vtkMultiProcessController* Controller; private: diff --git a/Filters/ParallelStatistics/vtkPDescriptiveStatistics.cxx b/Filters/ParallelStatistics/vtkPDescriptiveStatistics.cxx index 8d832490eeb4..2d36f4730407 100644 --- a/Filters/ParallelStatistics/vtkPDescriptiveStatistics.cxx +++ b/Filters/ParallelStatistics/vtkPDescriptiveStatistics.cxx @@ -187,22 +187,3 @@ void vtkPDescriptiveStatistics::Learn( } delete[] n_g; } - -//------------------------------------------------------------------------------ -int vtkPDescriptiveStatistics::RequestData( - vtkInformation* request, vtkInformationVector** inputVector, vtkInformationVector* outputVector) -{ - int retVal = this->Superclass::RequestData(request, inputVector, outputVector); - - if (this->Controller && this->Controller->GetLocalProcessId() != 0) - { - vtkMultiBlockDataSet* outModel = vtkMultiBlockDataSet::GetData(outputVector, OUTPUT_MODEL); - std::vector outputs = vtkCompositeDataSet::GetDataSets(outModel); - for (vtkDataObject* output : outputs) - { - output->Initialize(); - } - } - - return retVal; -} diff --git a/Filters/ParallelStatistics/vtkPDescriptiveStatistics.h b/Filters/ParallelStatistics/vtkPDescriptiveStatistics.h index 64949456a6f8..89df22b6712b 100644 --- a/Filters/ParallelStatistics/vtkPDescriptiveStatistics.h +++ b/Filters/ParallelStatistics/vtkPDescriptiveStatistics.h @@ -73,8 +73,6 @@ protected: vtkMultiProcessController* Controller; - int RequestData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) override; - private: vtkPDescriptiveStatistics(const vtkPDescriptiveStatistics&) = delete; void operator=(const vtkPDescriptiveStatistics&) = delete; -- GitLab From 393b923d1562bf890afdcba05d9a69544922a1cf Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Wed, 4 May 2022 09:24:53 -0400 Subject: [PATCH 0162/1015] Making vtkUnstructuredGrid::RemoveGhostsCells work with polyhedron cells `vtkUnstructuredGrid::RemoveGhostCells()` was crashing when there were polyhedra in the input. The entire function is rewritten to handle polyhedra. It is also optimized by directly writing on the raw buffers. Fixes #18513 --- Common/DataModel/vtkUnstructuredGrid.cxx | 231 ++++++++++++------ .../Testing/Cxx/TestGhostCellsGenerator.cxx | 19 ++ 2 files changed, 170 insertions(+), 80 deletions(-) diff --git a/Common/DataModel/vtkUnstructuredGrid.cxx b/Common/DataModel/vtkUnstructuredGrid.cxx index 850acfa02a35..2f6c7900757e 100644 --- a/Common/DataModel/vtkUnstructuredGrid.cxx +++ b/Common/DataModel/vtkUnstructuredGrid.cxx @@ -91,6 +91,112 @@ vtkStandardNewMacro(vtkUnstructuredGrid); vtkStandardExtendedNewMacro(vtkUnstructuredGrid); +namespace +{ +//============================================================================== +struct RemoveGhostCellsWorker +{ + vtkNew NewPointIdMap; + vtkNew NewCellIdMap; + + template + void operator()(ArrayT1* inputOffsets, ArrayT2* outputOffsets, vtkDataArray* inputConnectivityDA, + vtkDataArray* outputConnectivityDA, vtkUnsignedCharArray* types, + vtkUnsignedCharArray* ghostCells, vtkIdType numPoints, vtkIdTypeArray* inputFaces, + vtkIdTypeArray* inputFaceLocations, vtkIdTypeArray* outputFaces, + vtkIdTypeArray* outputFaceLocations) + { + if (!inputOffsets->GetNumberOfValues()) + { + return; + } + + auto inputConnectivity = vtkArrayDownCast(inputConnectivityDA); + auto outputConnectivity = vtkArrayDownCast(outputConnectivityDA); + + outputOffsets->SetNumberOfValues(inputOffsets->GetNumberOfValues()); + outputConnectivity->SetNumberOfValues(inputConnectivity->GetNumberOfValues()); + + auto inputOffsetsRange = vtk::DataArrayValueRange<1>(inputOffsets); + auto inputConnectivityRange = vtk::DataArrayValueRange<1>(inputConnectivity); + using InputValueType = typename decltype(inputOffsetsRange)::ValueType; + + auto outputOffsetsRange = vtk::DataArrayValueRange<1>(outputOffsets); + auto outputConnectivityRange = vtk::DataArrayValueRange<1>(outputConnectivity); + using OutputValueType = typename decltype(outputOffsetsRange)::ValueType; + + auto typesRange = vtk::DataArrayValueRange<1>(types); + auto ghostCellsRange = vtk::DataArrayValueRange<1>(ghostCells); + + std::vector pointIdRedirectionMap(numPoints, -1); + + this->NewPointIdMap->Allocate(numPoints); + this->NewCellIdMap->Allocate(types->GetNumberOfValues()); + + vtkIdType newPointsMaxId = -1; + InputValueType startId = inputOffsetsRange[0]; + vtkIdType newCellsMaxId = -1; + OutputValueType currentOutputOffset = 0; + + for (vtkIdType cellId = 0; cellId < inputOffsets->GetNumberOfValues() - 1; ++cellId) + { + if (ghostCellsRange[cellId] & + (vtkDataSetAttributes::HIDDENCELL | vtkDataSetAttributes::DUPLICATECELL)) + { + startId = inputOffsetsRange[cellId + 1]; + continue; + } + + this->NewCellIdMap->InsertNextId(cellId); + + InputValueType endId = inputOffsetsRange[cellId + 1]; + InputValueType size = endId - startId; + + outputOffsetsRange[++newCellsMaxId] = currentOutputOffset; + outputOffsetsRange[newCellsMaxId + 1] = currentOutputOffset + size; + + for (InputValueType cellPointId = 0; cellPointId < size; ++cellPointId) + { + vtkIdType pointId = inputConnectivityRange[startId + cellPointId]; + if (pointIdRedirectionMap[pointId] == -1) + { + pointIdRedirectionMap[pointId] = ++newPointsMaxId; + this->NewPointIdMap->InsertNextId(pointId); + } + outputConnectivityRange[currentOutputOffset + cellPointId] = pointIdRedirectionMap[pointId]; + } + + if (typesRange[cellId] == VTK_POLYHEDRON) + { + outputFaceLocations->SetValue(newCellsMaxId, outputFaces->GetNumberOfValues()); + vtkIdType inId = inputFaceLocations->GetValue(cellId); + vtkIdType numberOfFaces = inputFaces->GetValue(inId++); + outputFaces->InsertNextValue(numberOfFaces); + for (vtkIdType faceId = 0; faceId < numberOfFaces; ++faceId) + { + vtkIdType faceSize = inputFaces->GetValue(inId++); + outputFaces->InsertNextValue(faceSize); + for (vtkIdType pointId = 0; pointId < faceSize; ++pointId) + { + outputFaces->InsertNextValue(pointIdRedirectionMap[inputFaces->GetValue(inId++)]); + } + } + } + + currentOutputOffset += size; + startId = endId; + } + + if (outputFaceLocations) + { + outputFaceLocations->Resize(newCellsMaxId + 1); + } + outputOffsets->Resize(newCellsMaxId + 2); + outputConnectivity->Resize(currentOutputOffset + 1); + } +}; +} // anonymous namespace + //------------------------------------------------------------------------------ vtkIdTypeArray* vtkUnstructuredGrid::GetCellLocationsArray() { @@ -2215,102 +2321,67 @@ void vtkUnstructuredGrid::GetIdsOfCellsOfType(int type, vtkIdTypeArray* array) //------------------------------------------------------------------------------ void vtkUnstructuredGrid::RemoveGhostCells() { - vtkUnstructuredGrid* newGrid = vtkUnstructuredGrid::New(); - vtkUnsignedCharArray* temp; - unsigned char* cellGhosts; - - vtkIdType cellId, newCellId; - vtkIdList *cellPts, *pointMap; - vtkIdList* newCellPts; - vtkCell* cell; - vtkPoints* newPoints; - vtkIdType i, ptId, newId, numPts; - vtkIdType numCellPts; - double* x; - vtkPointData* pd = this->GetPointData(); - vtkPointData* outPD = newGrid->GetPointData(); - vtkCellData* cd = this->GetCellData(); - vtkCellData* outCD = newGrid->GetCellData(); - - // Get a pointer to the cell ghost array. - temp = this->GetCellGhostArray(); - if (temp == nullptr) + if (!this->CellData->GetGhostArray()) { - vtkDebugMacro("Could not find cell ghost array."); - newGrid->Delete(); return; } - if ((temp->GetNumberOfComponents() != 1) || - (temp->GetNumberOfTuples() < this->GetNumberOfCells())) + vtkNew newGrid; + + vtkSmartPointer newFaces, newFaceLocations; + if (this->GetFaces()) { - vtkErrorMacro("Poorly formed ghost array."); - newGrid->Delete(); - return; + newFaces = vtkSmartPointer::New(); + newFaces->Allocate(this->GetFaces()->GetNumberOfValues()); + newFaceLocations = vtkSmartPointer::New(); + newFaceLocations->SetNumberOfValues(this->GetNumberOfCells()); + newFaceLocations->Fill(-1); } - cellGhosts = temp->GetPointer(0); - - // Now threshold based on the cell ghost array. - - // ensure that all attributes are copied over, including global ids. - outPD->CopyAllOn(vtkDataSetAttributes::COPYTUPLE); - outCD->CopyAllOn(vtkDataSetAttributes::COPYTUPLE); - - outPD->CopyAllocate(pd); - outCD->CopyAllocate(cd); - - numPts = this->GetNumberOfPoints(); - newGrid->Allocate(this->GetNumberOfCells()); - newPoints = vtkPoints::New(); - newPoints->SetDataType(this->GetPoints()->GetDataType()); - newPoints->Allocate(numPts); - pointMap = vtkIdList::New(); // maps old point ids into new - pointMap->SetNumberOfIds(numPts); - pointMap->Fill(-1); + vtkNew newCells; +#ifdef VTK_USE_64BIT_IDS + if (!(this->GetNumberOfPoints() >> 32)) + { + newCells->ConvertTo32BitStorage(); + } +#endif - newCellPts = vtkIdList::New(); + using Dispatcher = vtkArrayDispatch::Dispatch2ByArray; + ::RemoveGhostCellsWorker worker; - // Check that the scalars of each cell satisfy the threshold criterion - for (cellId = 0; cellId < this->GetNumberOfCells(); cellId++) + if (!Dispatcher::Execute(this->Connectivity->GetOffsetsArray(), newCells->GetOffsetsArray(), + worker, this->Connectivity->GetConnectivityArray(), newCells->GetConnectivityArray(), + this->Types, this->CellData->GetGhostArray(), this->GetNumberOfPoints(), this->Faces, + this->FaceLocations, newFaces, newFaceLocations)) { - cell = this->GetCell(cellId); - cellPts = cell->GetPointIds(); - numCellPts = cell->GetNumberOfPoints(); - - if ((cellGhosts[cellId] & - (vtkDataSetAttributes::DUPLICATECELL | vtkDataSetAttributes::HIDDENCELL)) == - 0) // Keep the cell. - { - for (i = 0; i < numCellPts; i++) - { - ptId = cellPts->GetId(i); - if ((newId = pointMap->GetId(ptId)) < 0) - { - x = this->GetPoint(ptId); - newId = newPoints->InsertNextPoint(x); - pointMap->SetId(ptId, newId); - outPD->CopyData(pd, ptId, newId); - } - newCellPts->InsertId(i, newId); - } - newCellId = newGrid->InsertNextCell(cell->GetCellType(), newCellPts); - outCD->CopyData(cd, cellId, newCellId); - newCellPts->Reset(); - } // satisfied thresholding - } // for all cells + worker(this->Connectivity->GetOffsetsArray(), newCells->GetOffsetsArray(), + this->Connectivity->GetConnectivityArray(), newCells->GetConnectivityArray(), this->Types, + this->CellData->GetGhostArray(), this->GetNumberOfPoints(), this->Faces, this->FaceLocations, + newFaces, newFaceLocations); + } - // now clean up / update ourselves - pointMap->Delete(); - newCellPts->Delete(); + vtkNew newTypes; + newTypes->InsertTuplesStartingAt(0, worker.NewCellIdMap, this->Types); + vtkNew newPoints; + newPoints->SetDataType(this->GetPoints()->GetDataType()); + newPoints->GetData()->InsertTuplesStartingAt(0, worker.NewPointIdMap, this->Points->GetData()); newGrid->SetPoints(newPoints); - newPoints->Delete(); + + vtkCellData* outCD = newGrid->GetCellData(); + outCD->CopyAllOn(vtkDataSetAttributes::COPYTUPLE); + outCD->CopyAllocate(this->CellData); + outCD->CopyData(this->CellData, worker.NewCellIdMap); + + vtkPointData* outPD = newGrid->GetPointData(); + outPD->CopyAllOn(vtkDataSetAttributes::COPYTUPLE); + outPD->CopyAllocate(this->PointData); + outPD->CopyData(this->PointData, worker.NewPointIdMap); this->CopyStructure(newGrid); this->GetPointData()->ShallowCopy(newGrid->GetPointData()); this->GetCellData()->ShallowCopy(newGrid->GetCellData()); - newGrid->Delete(); - newGrid = nullptr; + this->SetCells(newTypes, newCells, newFaceLocations, newFaces); this->Squeeze(); } diff --git a/Filters/ParallelDIY2/Testing/Cxx/TestGhostCellsGenerator.cxx b/Filters/ParallelDIY2/Testing/Cxx/TestGhostCellsGenerator.cxx index 2e63f4c6aa22..9c9e50d438f1 100644 --- a/Filters/ParallelDIY2/Testing/Cxx/TestGhostCellsGenerator.cxx +++ b/Filters/ParallelDIY2/Testing/Cxx/TestGhostCellsGenerator.cxx @@ -44,6 +44,7 @@ #include "vtkPoints.h" #include "vtkPolyData.h" #include "vtkRectilinearGrid.h" +#include "vtkRemoveGhosts.h" #include "vtkStaticPointLocator.h" #include "vtkStructuredData.h" #include "vtkStructuredGrid.h" @@ -2348,6 +2349,24 @@ bool TestUnstructuredGrid( { vtkUnstructuredGrid* ug = vtkUnstructuredGrid::SafeDownCast(outPDS->GetPartition(id)); + // Testing vtkUnstructuredGrid::RemoveGhostCells + vtkNew ghostRemover; + ghostRemover->SetInputData(ug); + ghostRemover->Update(); + + auto ghostlessUG = vtkUnstructuredGrid::SafeDownCast(ghostRemover->GetOutput()); + if (ghostlessUG->GetNumberOfCells() != MaxExtent * MaxExtent * MaxExtent) + { + vtkLog(ERROR, "Wrong number of cell when removing ghost cells"); + retVal = false; + } + + if (ghostlessUG->GetNumberOfPoints() != (MaxExtent + 1) * (MaxExtent + 1) * (MaxExtent + 1)) + { + vtkLog(ERROR, "Wrong number of cell when removing ghost points"); + retVal = false; + } + if (!TestVoxelCellsVolume(ug)) { vtkLog(ERROR, "Generated cells have wrong geometry"); -- GitLab From 7f15357d0e757fe632112ee4ea91c578cc48b8ab Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 11 May 2022 00:49:13 -0400 Subject: [PATCH 0163/1015] Add changelog --- .../release/dev/improve-performance-vtkArrayCalculator.md | 7 +++++++ 1 file changed, 7 insertions(+) create mode 100644 Documentation/release/dev/improve-performance-vtkArrayCalculator.md diff --git a/Documentation/release/dev/improve-performance-vtkArrayCalculator.md b/Documentation/release/dev/improve-performance-vtkArrayCalculator.md new file mode 100644 index 000000000000..68acf7d2175f --- /dev/null +++ b/Documentation/release/dev/improve-performance-vtkArrayCalculator.md @@ -0,0 +1,7 @@ +## Improve vtkArrayCalculator's Performance + +The function parsers used by vtkArrayCalculator now don't call Modified every time SetScalarValue/SetVectorValue is +called, because when many threads are used, Modified is a communication overhead. Even when only one thread is +used calling Modified very often is still a performance overhead. vtkArrayCalculator's functor now saves the arrays' +size since they are constantly required. Also, instead of using 3 GetComponent, now only 1 GetTuple is used with a +pre-allocate a temp tuple. Finally, Dispatch is used on the ResultArray instead of using the vtkDataArray::SetTuple. -- GitLab From 8506e4f77436de3e2809880e7176f83ba4c4891a Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:23:13 +0200 Subject: [PATCH 0164/1015] Remove wrong cite --- Common/DataModel/vtkCellTreeLocator.h | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Common/DataModel/vtkCellTreeLocator.h b/Common/DataModel/vtkCellTreeLocator.h index 67132065616e..72031864ec0e 100644 --- a/Common/DataModel/vtkCellTreeLocator.h +++ b/Common/DataModel/vtkCellTreeLocator.h @@ -37,8 +37,8 @@ * - Tolerance * - RetainCellLists * - * @cite "Fast, Memory-Efficient Cell location in Unstructured Grids for Visualization" by - * Christoph Garth and Kenneth I. Joy in VisWeek, 2011. + * From the article: "Fast, Memory-Efficient Cell location in Unstructured Grids for Visualization" + * by Christoph Garth and Kenneth I. Joy in VisWeek, 2011. * * @sa * vtkAbstractCellLocator vtkCellLocator vtkStaticCellLocator vtkModifiedBSPTree vtkOBBTree -- GitLab From 3b6e649ae7f6a2de764ff678722f8e1e9b71a38a Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:23:22 +0200 Subject: [PATCH 0165/1015] Fix wrong @ usage --- Filters/Core/vtkArrayRename.h | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Filters/Core/vtkArrayRename.h b/Filters/Core/vtkArrayRename.h index b0c2cf6577d9..6046455f6c6a 100644 --- a/Filters/Core/vtkArrayRename.h +++ b/Filters/Core/vtkArrayRename.h @@ -52,19 +52,19 @@ public: */ int GetNumberOfArrays(int attributeType); /** - * Get the input array name from @idx in @attributeType field data. + * Get the input array name from \p idx in \p attributeType field data. */ const char* GetArrayOriginalName(int attributeType, int idx); /** - * Get the new array name from @idx in @attributeType field data. + * Get the new array name from \p idx in \p attributeType field data. */ const char* GetArrayNewName(int attributeType, int idx); /** - * Set the new array name from @idx in @attributeType field data. + * Set the new array name from \p idx in \p attributeType field data. */ void SetArrayName(int attributeType, int idx, const char* newName); /** - * Set the new array name from @inputName in @attributeType field data. + * Set the new array name from \p inputName in \p attributeType field data. */ void SetArrayName(int attributeType, const char* inputName, const char* newName); /** -- GitLab From 32ac9bf36b7d0af345a1883a872cbbceea0476a3 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:28:36 +0200 Subject: [PATCH 0166/1015] Remove \param incorrect usage --- Rendering/Context2D/vtkContext2D.h | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/Rendering/Context2D/vtkContext2D.h b/Rendering/Context2D/vtkContext2D.h index a7b74ac5c6da..ba18cef1a5cb 100644 --- a/Rendering/Context2D/vtkContext2D.h +++ b/Rendering/Context2D/vtkContext2D.h @@ -209,12 +209,12 @@ public: * - VTK_MARKER_CIRCLE * - VTK_MARKER_DIAMOND * Marker size is determined by the current pen width. - * \param shape the shape of the marker - * \param highlight whether to highlight the marker or not - * \param points where to draw the markers - * \param n number of points - * \param colors is an optional array of colors. - * \param nc_comps is the number of components for the color. + * shape: the shape of the marker + * highlight: whether to highlight the marker or not + * points: where to draw the markers + * n: number of points + * colors: is an optional array of colors. + * nc_comps: is the number of components for the color. */ virtual void DrawMarkers( int shape, bool highlight, float* points, int n, unsigned char* colors, int nc_comps); -- GitLab From 07f30d5bfe8b00bb16ee07e57bd275e8940fcd47 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:32:39 +0200 Subject: [PATCH 0167/1015] Add a verbatim block --- Filters/Statistics/vtkDescriptiveStatistics.h | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/Filters/Statistics/vtkDescriptiveStatistics.h b/Filters/Statistics/vtkDescriptiveStatistics.h index 65842d08bb3d..5de01eb1db3d 100644 --- a/Filters/Statistics/vtkDescriptiveStatistics.h +++ b/Filters/Statistics/vtkDescriptiveStatistics.h @@ -82,6 +82,8 @@ PURPOSE. See the above copyright notice for more information. * Kurt{X} = \frac{1}{N}\frac{\sum_{k=1}^N \left(x_k - \bar{x}\right)^3 }{\sigma^4} - 3 * \f] * + * \verbatim + * * \f(\sigma\f) is the population standard deviation, and \f(s\f) is the sample standard deviation. * Note that the kurtosis is corrected so the kurtosis of a gaussian distribution should yield 0. * @@ -89,6 +91,8 @@ PURPOSE. See the above copyright notice for more information. * Thus they output a `NaN`. Similarly, if there are no samples, then all derived statistics * yield a `NaN`. * + * \endverbatim + * * @par Thanks: * Thanks to Philippe Pebay and David Thompson from Sandia National Laboratories * for implementing this class. -- GitLab From dc696af69c55f0a85924d190923919a2dcff8598 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:33:56 +0200 Subject: [PATCH 0168/1015] Remove wrong link command --- Rendering/HyperTreeGrid/vtkHyperTreeGridMapper.h | 5 ----- 1 file changed, 5 deletions(-) diff --git a/Rendering/HyperTreeGrid/vtkHyperTreeGridMapper.h b/Rendering/HyperTreeGrid/vtkHyperTreeGridMapper.h index e4bd71c719ba..3ef87f681692 100644 --- a/Rendering/HyperTreeGrid/vtkHyperTreeGridMapper.h +++ b/Rendering/HyperTreeGrid/vtkHyperTreeGridMapper.h @@ -63,13 +63,9 @@ public: * filter. Setting the connection with this method removes all * other connections from the port. To add more than one connection * use AddInputConnection(). - * The input for the connection is the output port of another * filter, which is obtained with GetOutputPort(). Typical usage is - * filter2->SetInputConnection(0, filter1->GetOutputPort(0)). - - * \link vtkAlgorithm */ using Superclass::SetInputConnection; void SetInputDataObject(int port, vtkDataObject* input) override; @@ -109,7 +105,6 @@ public: * Fill the input port information objects for this algorithm. This * is invoked by the first call to GetInputPortInformation for each * port so subclasses can specify what they can handle. - * \link vtkAlgorithm */ int FillInputPortInformation(int port, vtkInformation* info) override; -- GitLab From a23f7defc1a9abd90e01bd25e379cdbe31b5f5fb Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:37:09 +0200 Subject: [PATCH 0169/1015] Remove wrong param usage --- Filters/General/vtkMultiThreshold.h | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/Filters/General/vtkMultiThreshold.h b/Filters/General/vtkMultiThreshold.h index 77c2e57a1970..01eacbeb80c9 100644 --- a/Filters/General/vtkMultiThreshold.h +++ b/Filters/General/vtkMultiThreshold.h @@ -190,9 +190,6 @@ public: * @param assoc One of vtkDataObject::FIELD_ASSOCIATION_CELLS or vtkDataObject::FIELD_ASSOCIATION_POINTS indicating whether * a point or cell array should be used. - * @param arrayName The name of the array to use for thresholding - * @param attribType The attribute to use for thresholding. - * One of vtkDataSetAttributes::SCALARS, VECTORS, TENSORS, NORMALS, TCOORDS, or GLOBALIDS. * @param component The number of the component to threshold on or one of the following enumerants for norms: * LINFINITY_NORM, L2_NORM, L1_NORM. @@ -202,6 +199,11 @@ public: * @return An index used to identify the cells selected by the interval or -1 if the interval specification was invalid. * If a valid value is returned, you may pass it to OutputSet(). + * + * arrayName The name of the array to use for thresholding + * attribType The attribute to use for thresholding. + * One of vtkDataSetAttributes::SCALARS, VECTORS, TENSORS, NORMALS, TCOORDS, or GLOBALIDS. + * */ int AddIntervalSet(double xmin, double xmax, int omin, int omax, int assoc, const char* arrayName, int component, int allScalars); -- GitLab From a33b202cef2509dbd0541c85dd7ff1f5fa448e52 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:38:47 +0200 Subject: [PATCH 0170/1015] Add a verbatim section --- IO/NetCDF/vtkNetCDFCFWriter.h | 2 ++ 1 file changed, 2 insertions(+) diff --git a/IO/NetCDF/vtkNetCDFCFWriter.h b/IO/NetCDF/vtkNetCDFCFWriter.h index 826dc6bc8175..1a565b933e76 100644 --- a/IO/NetCDF/vtkNetCDFCFWriter.h +++ b/IO/NetCDF/vtkNetCDFCFWriter.h @@ -91,6 +91,7 @@ public: * Add/clear attributes that define the grid mapping (or the coordinate * reference system (CRS)) * + * \verbatim * To obtain the correct CF conventions attribute names and values * when knowing the EPSG code use projinfo This will * print the WKT string. From that you can get the attribute names @@ -102,6 +103,7 @@ public: * Grid Mapping to WKT See also CF * Grid Mapping for the attributes needed for each projection. + * \endverbatim */ void AddGridMappingAttribute(const char* name, const char* value); void AddGridMappingAttribute(const char* name, double value); -- GitLab From 74d79c0cf0601c27014e23eb84897e444f421ae6 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 10:43:10 +0200 Subject: [PATCH 0171/1015] Fix missing quote --- Common/DataModel/vtkSelectionNode.h | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Common/DataModel/vtkSelectionNode.h b/Common/DataModel/vtkSelectionNode.h index 2b4b551ec749..40ab9440ba50 100644 --- a/Common/DataModel/vtkSelectionNode.h +++ b/Common/DataModel/vtkSelectionNode.h @@ -87,7 +87,7 @@ * `BLOCK_SELECTORS`, `PROCESS_ID` etc. are needed to correctly identify the * chosen element(s) in case of composite or distributed datasets. * - * * `vtkSelectionNode::FRUSTUM: this type is used to define a frustum in world + * * `vtkSelectionNode::FRUSTUM`: this type is used to define a frustum in world * coordinates that identifies the selected elements. In this case, the * selection list is a vtkDoubleArray with 32 values specifying the 8 frustum * corners in homogeneous world coordinates. -- GitLab From 050d53525c9b2626159d33af9c96db96adae9151 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 11:34:52 +0200 Subject: [PATCH 0172/1015] Remove wrong doxygen links --- Documentation/Doxygen/PythonWrappers.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Documentation/Doxygen/PythonWrappers.md b/Documentation/Doxygen/PythonWrappers.md index 4bc4d7654cef..1e700de00932 100644 --- a/Documentation/Doxygen/PythonWrappers.md +++ b/Documentation/Doxygen/PythonWrappers.md @@ -133,13 +133,13 @@ becoming confused about what exactly the '`vtk`' module is. ## Classes Derived from vtkObjectBase {#vtkobject-classes} In C++, classes derived from `vtkObjectBase` are instantiated by calling -`::New()`. In Python, these classes are instantiated by simply calling the +`New()`. In Python, these classes are instantiated by simply calling the constructor: o = vtkObject() For factory classes, the returned object's type might be a subtype of the -class. This occurs because the Python wrappers are actually calling `::New()` +class. This occurs because the Python wrappers are actually calling `New()` for you, which allows the VTK factory overrides to occur: >>> a = vtkActor() @@ -180,7 +180,7 @@ most important of these is `vtkVariant`, which can hold any type of object: The wrapping of these classes is fully automatic, but is done in a slightly different manner than `vtkObjectBase`-derived classes. First, these classes -have no `::New()` method, and instead the public C++ constructors are wrapped +have no `New()` method, and instead the public C++ constructors are wrapped to create an equivalent Python contructor. Second, the Python object contains its own copy of the C++ object, rather than containing just a pointer to the C++ object. The vast majority of these classes are lightweight -- GitLab From d0c286bd8dd0533d2fd42bbdedcdae6ae7c5eb16 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 11:37:55 +0200 Subject: [PATCH 0173/1015] Remove wrong pre command --- Filters/Core/vtkArrayCalculator.h | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Filters/Core/vtkArrayCalculator.h b/Filters/Core/vtkArrayCalculator.h index 1bdc9cff52dc..1e5638200a12 100644 --- a/Filters/Core/vtkArrayCalculator.h +++ b/Filters/Core/vtkArrayCalculator.h @@ -26,7 +26,7 @@ * parallel using vtkSMPTools. * * The functions that this array calculator understands is: - * 
+ *
  * standard operations:
  * +
  * -
@@ -57,7 +57,7 @@
  * sqrt
  * tan
  * tanh
- *
+ * * Note that some of these operations work on scalars, some on vectors, and some on * both (e.g., you can multiply a scalar times a vector). The operations are performed * tuple-wise (i.e., tuple-by-tuple). The user must specify which arrays to use as -- GitLab From 9717b93b8c817933f2ff8d5ac0ea182fb54014aa Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 8 May 2022 11:39:12 +0200 Subject: [PATCH 0174/1015] Better verbatim --- Filters/Statistics/vtkDescriptiveStatistics.h | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Filters/Statistics/vtkDescriptiveStatistics.h b/Filters/Statistics/vtkDescriptiveStatistics.h index 5de01eb1db3d..f01baa232805 100644 --- a/Filters/Statistics/vtkDescriptiveStatistics.h +++ b/Filters/Statistics/vtkDescriptiveStatistics.h @@ -56,6 +56,8 @@ PURPOSE. See the above copyright notice for more information. * either state of `SampleEstimate` should yield very similar results * (see explicit formulas below). * + * \verbatim + * * The formulas used are as follows, writing \f( \bar{X} \f) the mean of \f( X \f) and \f( N \f) * the number of samples: * - Sample estimate: @@ -82,8 +84,6 @@ PURPOSE. See the above copyright notice for more information. * Kurt{X} = \frac{1}{N}\frac{\sum_{k=1}^N \left(x_k - \bar{x}\right)^3 }{\sigma^4} - 3 * \f] * - * \verbatim - * * \f(\sigma\f) is the population standard deviation, and \f(s\f) is the sample standard deviation. * Note that the kurtosis is corrected so the kurtosis of a gaussian distribution should yield 0. * -- GitLab From 7224f347aa119cc2bb21d88e4912e81b35aa10b7 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Tue, 10 May 2022 15:51:58 +0200 Subject: [PATCH 0175/1015] remove wrong param usage --- Filters/General/vtkMultiThreshold.h | 22 ++++++++++------------ 1 file changed, 10 insertions(+), 12 deletions(-) diff --git a/Filters/General/vtkMultiThreshold.h b/Filters/General/vtkMultiThreshold.h index 01eacbeb80c9..2f7826905367 100644 --- a/Filters/General/vtkMultiThreshold.h +++ b/Filters/General/vtkMultiThreshold.h @@ -181,29 +181,27 @@ public: \f$\infty\f$ * or both endpoints set to \f$-\infty\f$ in order to locate cells with problematic values. - * @param xmin The minimum attribute value - * @param xmax The maximum attribute value - * @param omin Whether the interval should be open or closed at \a xmin. Use + * xmin: The minimum attribute value + * xmax: The maximum attribute value + * omin: Whether the interval should be open or closed at \a xmin. Use vtkMultiThreshold::OPEN or vtkMultiThreshold::CLOSED. - * @param omax Whether the interval should be open or closed at \a xmax. Use + * omax: Whether the interval should be open or closed at \a xmax. Use vtkMultiThreshold::OPEN or vtkMultiThreshold::CLOSED. - * @param assoc One of vtkDataObject::FIELD_ASSOCIATION_CELLS or + * assoc: One of vtkDataObject::FIELD_ASSOCIATION_CELLS or vtkDataObject::FIELD_ASSOCIATION_POINTS indicating whether * a point or cell array should be used. - * @param component The number of the component to threshold on or one of the following enumerants + * arrayName: The name of the array to use for thresholding + * attribType: The attribute to use for thresholding. + * One of vtkDataSetAttributes::SCALARS, VECTORS, TENSORS, NORMALS, TCOORDS, or GLOBALIDS. + * component: The number of the component to threshold on or one of the following enumerants for norms: * LINFINITY_NORM, L2_NORM, L1_NORM. - * @param allScalars When \a center is vtkDataObject::FIELD_ASSOCIATION_POINTS, must all scalars + * allScalars: When \a center is vtkDataObject::FIELD_ASSOCIATION_POINTS, must all scalars be in the interval for * the cell to be passed to the output, or just a single point's scalar? * @return An index used to identify the cells selected by the interval or -1 if the interval specification was invalid. * If a valid value is returned, you may pass it to OutputSet(). - * - * arrayName The name of the array to use for thresholding - * attribType The attribute to use for thresholding. - * One of vtkDataSetAttributes::SCALARS, VECTORS, TENSORS, NORMALS, TCOORDS, or GLOBALIDS. - * */ int AddIntervalSet(double xmin, double xmax, int omin, int omax, int assoc, const char* arrayName, int component, int allScalars); -- GitLab From ac4cb771d1acf307a2a23502b357cb940304f248 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Thu, 12 May 2022 11:27:23 -0400 Subject: [PATCH 0176/1015] ci: disable pyi generation on older wheels 3.8 and newer seem to have `os.add_dll_directory` doing the work there. Just disable it for now. --- .gitlab/ci/configure_wheel_windows36_x86_64.cmake | 3 +++ .gitlab/ci/configure_wheel_windows37_x86_64.cmake | 3 +++ 2 files changed, 6 insertions(+) diff --git a/.gitlab/ci/configure_wheel_windows36_x86_64.cmake b/.gitlab/ci/configure_wheel_windows36_x86_64.cmake index a1b99c8d4b61..22997ee9f26c 100644 --- a/.gitlab/ci/configure_wheel_windows36_x86_64.cmake +++ b/.gitlab/ci/configure_wheel_windows36_x86_64.cmake @@ -1 +1,4 @@ +# Disable `.pyi` files. Libraries don't load properly. +set(VTK_BUILD_PYI_FILES OFF CACHE BOOL "") + include("${CMAKE_CURRENT_LIST_DIR}/configure_wheel.cmake") diff --git a/.gitlab/ci/configure_wheel_windows37_x86_64.cmake b/.gitlab/ci/configure_wheel_windows37_x86_64.cmake index a1b99c8d4b61..22997ee9f26c 100644 --- a/.gitlab/ci/configure_wheel_windows37_x86_64.cmake +++ b/.gitlab/ci/configure_wheel_windows37_x86_64.cmake @@ -1 +1,4 @@ +# Disable `.pyi` files. Libraries don't load properly. +set(VTK_BUILD_PYI_FILES OFF CACHE BOOL "") + include("${CMAKE_CURRENT_LIST_DIR}/configure_wheel.cmake") -- GitLab From 343dac3e6548cdf41b5d78a0a2b78fe44f1c4c64 Mon Sep 17 00:00:00 2001 From: Sean McBride Date: Thu, 14 Apr 2022 13:39:30 -0400 Subject: [PATCH 0177/1015] Fixed Thread Sanitizer complaint by making variable atomic Without this multiple threads are accessing IsParallel simultaneously without any synchroniztion/mutex. --- Common/Core/SMP/Common/vtkSMPToolsImpl.h | 4 +++- Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx | 17 ++++++++++----- Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx | 19 +++++++++++------ Common/Core/SMP/TBB/vtkSMPToolsImpl.txx | 21 +++++++++++++------ 4 files changed, 43 insertions(+), 18 deletions(-) diff --git a/Common/Core/SMP/Common/vtkSMPToolsImpl.h b/Common/Core/SMP/Common/vtkSMPToolsImpl.h index 9c82ac6d88b1..0fa8b5b6e670 100644 --- a/Common/Core/SMP/Common/vtkSMPToolsImpl.h +++ b/Common/Core/SMP/Common/vtkSMPToolsImpl.h @@ -20,6 +20,8 @@ #include "vtkObject.h" #include "vtkSMP.h" +#include + #define VTK_SMP_MAX_BACKENDS_NB 4 #define VTK_SMP_BACKEND_SEQUENTIAL 0 @@ -98,7 +100,7 @@ public: private: bool NestedActivated = true; - bool IsParallel = false; + std::atomic IsParallel{ false }; }; using ExecuteFunctorPtrType = void (*)(void*, vtkIdType, vtkIdType, vtkIdType); diff --git a/Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx b/Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx index 6ca40ee37b34..581df72242f1 100644 --- a/Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx +++ b/Common/Core/SMP/OpenMP/vtkSMPToolsImpl.txx @@ -61,17 +61,24 @@ void vtkSMPToolsImpl::For( } else { - // this->IsParallel may have threads conficts but it will be always between true and true, - // it is set to false only in sequential code. // /!\ This behaviour should be changed if we want more control on nested // (e.g only the 2 first nested For are in parallel) - bool fromParallelCode = this->IsParallel; - this->IsParallel = true; + bool fromParallelCode = this->IsParallel.exchange(true); vtkSMPToolsImplForOpenMP( first, last, grain, ExecuteFunctorOpenMP, &fi, this->NestedActivated); - this->IsParallel &= fromParallelCode; + // Atomic contortion to achieve this->IsParallel &= fromParallelCode. + // This compare&exchange basically boils down to: + // if (IsParallel == trueFlag) + // IsParallel = fromParallelCode; + // else + // trueFlag = IsParallel; + // Which either leaves IsParallel as false or sets it to fromParallelCode (i.e. &=). + // Note that the return value of compare_exchange_weak() is not needed, + // and that no looping is necessary. + bool trueFlag = true; + this->IsParallel.compare_exchange_weak(trueFlag, fromParallelCode); } } diff --git a/Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx b/Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx index 9d059b748d24..45cf1d32c9ba 100644 --- a/Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx +++ b/Common/Core/SMP/STDThread/vtkSMPToolsImpl.txx @@ -55,7 +55,7 @@ void vtkSMPToolsImpl::For( return; } - if (grain >= n || (this->IsParallel && !this->NestedActivated)) + if (grain >= n || (!this->NestedActivated && this->IsParallel)) { fi.Execute(first, last); } @@ -69,12 +69,9 @@ void vtkSMPToolsImpl::For( grain = (estimateGrain > 0) ? estimateGrain : 1; } - // this->IsParallel may have threads conficts but it will be always between true and true, - // it is set to false only in sequential code. // /!\ This behaviour should be changed if we want more control on nested // (e.g only the 2 first nested For are in parallel) - bool fromParallelCode = this->IsParallel; - this->IsParallel = true; + bool fromParallelCode = this->IsParallel.exchange(true); vtkSMPThreadPool pool(threadNumber); for (vtkIdType from = first; from < last; from += grain) @@ -84,7 +81,17 @@ void vtkSMPToolsImpl::For( } pool.Join(); - this->IsParallel &= fromParallelCode; + // Atomic contortion to achieve this->IsParallel &= fromParallelCode. + // This compare&exchange basically boils down to: + // if (IsParallel == trueFlag) + // IsParallel = fromParallelCode; + // else + // trueFlag = IsParallel; + // Which either leaves IsParallel as false or sets it to fromParallelCode (i.e. &=). + // Note that the return value of compare_exchange_weak() is not needed, + // and that no looping is necessary. + bool trueFlag = true; + this->IsParallel.compare_exchange_weak(trueFlag, fromParallelCode); } } diff --git a/Common/Core/SMP/TBB/vtkSMPToolsImpl.txx b/Common/Core/SMP/TBB/vtkSMPToolsImpl.txx index 2427ca27f2a9..dcc7189b69ec 100644 --- a/Common/Core/SMP/TBB/vtkSMPToolsImpl.txx +++ b/Common/Core/SMP/TBB/vtkSMPToolsImpl.txx @@ -109,20 +109,29 @@ template void vtkSMPToolsImpl::For( vtkIdType first, vtkIdType last, vtkIdType grain, FunctorInternal& fi) { - if (this->IsParallel && !this->NestedActivated) + if (!this->NestedActivated && this->IsParallel) { fi.Execute(first, last); } else { - // this->IsParallel may have threads conficts but it will be always between true and true, - // it is set to false only in sequential code. // /!\ This behaviour should be changed if we want more control on nested // (e.g only the 2 first nested For are in parallel) - bool fromParallelCode = this->IsParallel; - this->IsParallel = true; + bool fromParallelCode = this->IsParallel.exchange(true); + vtkSMPToolsImplForTBB(first, last, grain, ExecuteFunctorTBB, &fi); - this->IsParallel &= fromParallelCode; + + // Atomic contortion to achieve this->IsParallel &= fromParallelCode. + // This compare&exchange basically boils down to: + // if (IsParallel == trueFlag) + // IsParallel = fromParallelCode; + // else + // trueFlag = IsParallel; + // Which either leaves IsParallel as false or sets it to fromParallelCode (i.e. &=). + // Note that the return value of compare_exchange_weak() is not needed, + // and that no looping is necessary. + bool trueFlag = true; + this->IsParallel.compare_exchange_weak(trueFlag, fromParallelCode); } } -- GitLab From b19cfb635a7078df910f5967e2944914e60681a6 Mon Sep 17 00:00:00 2001 From: Paul Harris Date: Fri, 13 May 2022 11:30:20 +0800 Subject: [PATCH 0178/1015] Fix fmt PR url (pullrequest) --- Documentation/release/9.1.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Documentation/release/9.1.md b/Documentation/release/9.1.md index 278bda5459d2..c591059df456 100644 --- a/Documentation/release/9.1.md +++ b/Documentation/release/9.1.md @@ -668,7 +668,7 @@ warnings.filterwarnings("default", category=DeprecationWarning) * `sqlite` 3.36.0 * `tiff` 4.3.0 -[fmt-pr2432]: https://github.com/fmtlib/fmt/pull/2432. +[fmt-pr2432]: https://github.com/fmtlib/fmt/pull/2432 [](#deprecations) ## Deprecated and Removed Features -- GitLab From 08a4ecbbd46601e620a829e9dc50df1c2761e38b Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Fri, 13 May 2022 00:01:29 -0400 Subject: [PATCH 0179/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index c3311bc48f19..94687c05139f 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220512) +set(VTK_BUILD_VERSION 20220513) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 36f43297fa38a33c8e9e6c27f7903c1512c378b9 Mon Sep 17 00:00:00 2001 From: Lucas Givord Date: Fri, 13 May 2022 09:24:33 +0200 Subject: [PATCH 0180/1015] Fix warnings --- .../Core/Testing/Cxx/TestParallelCoordinatesSelection.cxx | 4 ++-- Charts/Core/vtkChartParallelCoordinates.cxx | 6 +++--- Charts/Core/vtkChartParallelCoordinates.h | 2 +- Charts/Core/vtkPlotParallelCoordinates.cxx | 4 ++-- 4 files changed, 8 insertions(+), 8 deletions(-) diff --git a/Charts/Core/Testing/Cxx/TestParallelCoordinatesSelection.cxx b/Charts/Core/Testing/Cxx/TestParallelCoordinatesSelection.cxx index 56efa68a346a..e7d80e88a37f 100644 --- a/Charts/Core/Testing/Cxx/TestParallelCoordinatesSelection.cxx +++ b/Charts/Core/Testing/Cxx/TestParallelCoordinatesSelection.cxx @@ -320,8 +320,8 @@ static const char* eventLog = "# StreamVersion 1.1\n" namespace { -static void UpdateSelectionMode(vtkObject* caller, unsigned long vtkNotUsed(eventId), - void* clientData, void* vtkNotUsed(callData)) +void UpdateSelectionMode(vtkObject* caller, unsigned long vtkNotUsed(eventId), void* clientData, + void* vtkNotUsed(callData)) { const auto iren = static_cast(caller); auto chart = static_cast(clientData); diff --git a/Charts/Core/vtkChartParallelCoordinates.cxx b/Charts/Core/vtkChartParallelCoordinates.cxx index 4ad59c0b986b..7bd3afebfb7a 100644 --- a/Charts/Core/vtkChartParallelCoordinates.cxx +++ b/Charts/Core/vtkChartParallelCoordinates.cxx @@ -229,7 +229,7 @@ bool vtkChartParallelCoordinates::Paint(vtkContext2D* painter) // Draw all stored range for (int axis = 0; axis < this->Storage->AxesSelections.size(); ++axis) { - int size = this->Storage->AxesSelections[axis].size(); + size_t size = this->Storage->AxesSelections[axis].size(); size = size - size % 2; for (int j = 0; j < size; j += 2) { @@ -723,7 +723,7 @@ void vtkChartParallelCoordinates::ResetSelection() for (size_t axe = 0; axe < this->Storage->AxesSelections.size(); axe++) { - if (this->Storage->AxesSelections[axe].size() > 0) + if (!this->Storage->AxesSelections[axe].empty()) { this->Storage->Plot->SetSelectionRange( static_cast(axe), this->Storage->AxesSelections[axe]); @@ -791,7 +791,7 @@ void vtkChartParallelCoordinates::UpdateCurrentAxisSelection(int axisId) bool startAMerge = false; // Invalid range will be set to -1 - int size = this->Storage->AxesSelections[axisId].size(); + size_t size = this->Storage->AxesSelections[axisId].size(); size = this->Storage->AxesSelections[axisId].size() - this->Storage->AxesSelections[axisId].size() % 2; for (int i = 0; i < size; i += 2) diff --git a/Charts/Core/vtkChartParallelCoordinates.h b/Charts/Core/vtkChartParallelCoordinates.h index 0e9d0e1b65fe..6f90f73dbbba 100644 --- a/Charts/Core/vtkChartParallelCoordinates.h +++ b/Charts/Core/vtkChartParallelCoordinates.h @@ -168,7 +168,7 @@ protected: /** * Private storage object - where we hide all of our STL objects... */ - class Private; + struct Private; Private* Storage; ///@} diff --git a/Charts/Core/vtkPlotParallelCoordinates.cxx b/Charts/Core/vtkPlotParallelCoordinates.cxx index 60470e59a9b0..94d219f0b29d 100644 --- a/Charts/Core/vtkPlotParallelCoordinates.cxx +++ b/Charts/Core/vtkPlotParallelCoordinates.cxx @@ -207,7 +207,7 @@ bool vtkPlotParallelCoordinates::SetSelectionRange(int axis, std::vector vtkIdType id = 0; this->Selection->GetTypedTuple(i, &id); - int size = axisSelection.size() - axisSelection.size() % 2; + size_t size = axisSelection.size() - axisSelection.size() % 2; for (int j = 0; j < size; j += 2) { float low = axisSelection[j]; @@ -229,7 +229,7 @@ bool vtkPlotParallelCoordinates::SetSelectionRange(int axis, std::vector std::vector& col = this->Storage->at(axis); for (size_t i = 0; i < col.size(); ++i) { - int size = axisSelection.size() - axisSelection.size() % 2; + size_t size = axisSelection.size() - axisSelection.size() % 2; for (int j = 0; j < size; j += 2) { float low = axisSelection[j]; -- GitLab From 50c1f34c9211195ac18fb8966c26a22db53880dd Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Fri, 6 May 2022 16:42:26 -0400 Subject: [PATCH 0181/1015] New parallel versions for compute quantiles and compute quartiles `vtkPComputeQuantiles` and `vtkPComputeQuartiles` are introduced. They override the new method `CreateOrderStatisticsFilter` which returns `vtkPOrderStatistics` instead of `vtkOrderStatistics`. --- Filters/ParallelStatistics/CMakeLists.txt | 2 + .../vtkPComputeQuantiles.cxx | 50 ++++++++++++++ .../ParallelStatistics/vtkPComputeQuantiles.h | 67 +++++++++++++++++++ .../vtkPComputeQuartiles.cxx | 50 ++++++++++++++ .../ParallelStatistics/vtkPComputeQuartiles.h | 67 +++++++++++++++++++ Filters/Statistics/vtkComputeQuantiles.cxx | 9 ++- Filters/Statistics/vtkComputeQuantiles.h | 3 + 7 files changed, 247 insertions(+), 1 deletion(-) create mode 100644 Filters/ParallelStatistics/vtkPComputeQuantiles.cxx create mode 100644 Filters/ParallelStatistics/vtkPComputeQuantiles.h create mode 100644 Filters/ParallelStatistics/vtkPComputeQuartiles.cxx create mode 100644 Filters/ParallelStatistics/vtkPComputeQuartiles.h diff --git a/Filters/ParallelStatistics/CMakeLists.txt b/Filters/ParallelStatistics/CMakeLists.txt index fcbf4391afd6..6ce54b549d08 100644 --- a/Filters/ParallelStatistics/CMakeLists.txt +++ b/Filters/ParallelStatistics/CMakeLists.txt @@ -1,6 +1,8 @@ set(classes vtkPAutoCorrelativeStatistics vtkPBivariateLinearTableThreshold + vtkPComputeQuantiles + vtkPComputeQuartiles vtkPContingencyStatistics vtkPCorrelativeStatistics vtkPDescriptiveStatistics diff --git a/Filters/ParallelStatistics/vtkPComputeQuantiles.cxx b/Filters/ParallelStatistics/vtkPComputeQuantiles.cxx new file mode 100644 index 000000000000..1946448cca36 --- /dev/null +++ b/Filters/ParallelStatistics/vtkPComputeQuantiles.cxx @@ -0,0 +1,50 @@ +/*========================================================================= + +Program: Visualization Toolkit +Module: vtkPContingencyStatistics.cxx + +Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen +All rights reserved. +See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + +This software is distributed WITHOUT ANY WARRANTY; without even +the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR +PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/*------------------------------------------------------------------------- + Copyright 2011 Sandia Corporation. + Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, + the U.S. Government retains certain rights in this software. + -------------------------------------------------------------------------*/ + +#include "vtkPComputeQuantiles.h" + +#include "vtkMultiProcessController.h" +#include "vtkObjectFactory.h" +#include "vtkPOrderStatistics.h" +#include "vtkSmartPointer.h" + +vtkStandardNewMacro(vtkPComputeQuantiles); +vtkCxxSetObjectMacro(vtkPComputeQuantiles, Controller, vtkMultiProcessController); + +//------------------------------------------------------------------------------ +vtkPComputeQuantiles::vtkPComputeQuantiles() +{ + this->Controller = nullptr; + this->SetController(vtkMultiProcessController::GetGlobalController()); +} + +//------------------------------------------------------------------------------ +vtkPComputeQuantiles::~vtkPComputeQuantiles() +{ + this->SetController(nullptr); +} + +//------------------------------------------------------------------------------ +vtkOrderStatistics* vtkPComputeQuantiles::CreateOrderStatisticsFilter() +{ + auto filter = vtkPOrderStatistics::New(); + filter->SetController(this->Controller); + return filter; +} diff --git a/Filters/ParallelStatistics/vtkPComputeQuantiles.h b/Filters/ParallelStatistics/vtkPComputeQuantiles.h new file mode 100644 index 000000000000..5166fc0873c1 --- /dev/null +++ b/Filters/ParallelStatistics/vtkPComputeQuantiles.h @@ -0,0 +1,67 @@ +/*========================================================================= + +Program: Visualization Toolkit +Module: vtkPComputeQuantiles.h + +Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen +All rights reserved. +See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + +This software is distributed WITHOUT ANY WARRANTY; without even +the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR +PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/*------------------------------------------------------------------------- + Copyright 2011 Sandia Corporation. + Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, + the U.S. Government retains certain rights in this software. + -------------------------------------------------------------------------*/ +/** + * @class vtkPComputeQuantiles + * @brief A class for parallel univariate order statistics + * + * `vtkPComputeQuantiles` computes the quantiles of the input table in a a distributed + * environment. + * + * @sa vtkPComputeQuantiles + */ + +#ifndef vtkPComputeQuantiles_h +#define vtkPComputeQuantiles_h + +#include "vtkComputeQuantiles.h" +#include "vtkFiltersParallelStatisticsModule.h" // For export macro + +class vtkOrderStatistics; +class vtkMultiProcessController; + +class VTKFILTERSPARALLELSTATISTICS_EXPORT vtkPComputeQuantiles : public vtkComputeQuantiles +{ +public: + static vtkPComputeQuantiles* New(); + vtkTypeMacro(vtkPComputeQuantiles, vtkComputeQuantiles); + + ///@{ + /** + * Get/Set the multiprocess controller. If no controller is set, + * single process is assumed. + */ + virtual void SetController(vtkMultiProcessController*); + vtkGetObjectMacro(Controller, vtkMultiProcessController); + ///@} + +protected: + vtkPComputeQuantiles(); + ~vtkPComputeQuantiles() override; + + vtkOrderStatistics* CreateOrderStatisticsFilter() override; + + vtkMultiProcessController* Controller = nullptr; + +private: + vtkPComputeQuantiles(const vtkPComputeQuantiles&) = delete; + void operator=(const vtkPComputeQuantiles&) = delete; +}; + +#endif diff --git a/Filters/ParallelStatistics/vtkPComputeQuartiles.cxx b/Filters/ParallelStatistics/vtkPComputeQuartiles.cxx new file mode 100644 index 000000000000..cabe3fb9385e --- /dev/null +++ b/Filters/ParallelStatistics/vtkPComputeQuartiles.cxx @@ -0,0 +1,50 @@ +/*========================================================================= + +Program: Visualization Toolkit +Module: vtkPContingencyStatistics.cxx + +Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen +All rights reserved. +See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + +This software is distributed WITHOUT ANY WARRANTY; without even +the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR +PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/*------------------------------------------------------------------------- + Copyright 2011 Sandia Corporation. + Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, + the U.S. Government retains certain rights in this software. + -------------------------------------------------------------------------*/ + +#include "vtkPComputeQuartiles.h" + +#include "vtkMultiProcessController.h" +#include "vtkObjectFactory.h" +#include "vtkPOrderStatistics.h" +#include "vtkSmartPointer.h" + +vtkStandardNewMacro(vtkPComputeQuartiles); +vtkCxxSetObjectMacro(vtkPComputeQuartiles, Controller, vtkMultiProcessController); + +//------------------------------------------------------------------------------ +vtkPComputeQuartiles::vtkPComputeQuartiles() +{ + this->Controller = nullptr; + this->SetController(vtkMultiProcessController::GetGlobalController()); +} + +//------------------------------------------------------------------------------ +vtkPComputeQuartiles::~vtkPComputeQuartiles() +{ + this->SetController(nullptr); +} + +//------------------------------------------------------------------------------ +vtkOrderStatistics* vtkPComputeQuartiles::CreateOrderStatisticsFilter() +{ + auto filter = vtkPOrderStatistics::New(); + filter->SetController(this->Controller); + return filter; +} diff --git a/Filters/ParallelStatistics/vtkPComputeQuartiles.h b/Filters/ParallelStatistics/vtkPComputeQuartiles.h new file mode 100644 index 000000000000..acbd928c1dee --- /dev/null +++ b/Filters/ParallelStatistics/vtkPComputeQuartiles.h @@ -0,0 +1,67 @@ +/*========================================================================= + +Program: Visualization Toolkit +Module: vtkPComputeQuartiles.h + +Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen +All rights reserved. +See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + +This software is distributed WITHOUT ANY WARRANTY; without even +the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR +PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/*------------------------------------------------------------------------- + Copyright 2011 Sandia Corporation. + Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, + the U.S. Government retains certain rights in this software. + -------------------------------------------------------------------------*/ +/** + * @class vtkPComputeQuartiles + * @brief A class for parallel univariate order statistics + * + * `vtkPComputeQuartiles` computes the quartiles of the input table in a a distributed + * environment. + * + * @sa vtkPComputeQuartiles + */ + +#ifndef vtkPComputeQuartiles_h +#define vtkPComputeQuartiles_h + +#include "vtkComputeQuartiles.h" +#include "vtkFiltersParallelStatisticsModule.h" // For export macro + +class vtkOrderStatistics; +class vtkMultiProcessController; + +class VTKFILTERSPARALLELSTATISTICS_EXPORT vtkPComputeQuartiles : public vtkComputeQuartiles +{ +public: + static vtkPComputeQuartiles* New(); + vtkTypeMacro(vtkPComputeQuartiles, vtkComputeQuartiles); + + ///@{ + /** + * Get/Set the multiprocess controller. If no controller is set, + * single process is assumed. + */ + virtual void SetController(vtkMultiProcessController*); + vtkGetObjectMacro(Controller, vtkMultiProcessController); + ///@} + +protected: + vtkPComputeQuartiles(); + ~vtkPComputeQuartiles() override; + + vtkOrderStatistics* CreateOrderStatisticsFilter() override; + + vtkMultiProcessController* Controller; + +private: + vtkPComputeQuartiles(const vtkPComputeQuartiles&) = delete; + void operator=(const vtkPComputeQuartiles&) = delete; +}; + +#endif diff --git a/Filters/Statistics/vtkComputeQuantiles.cxx b/Filters/Statistics/vtkComputeQuantiles.cxx index a851bbe33627..9513c2e0b803 100644 --- a/Filters/Statistics/vtkComputeQuantiles.cxx +++ b/Filters/Statistics/vtkComputeQuantiles.cxx @@ -154,7 +154,8 @@ void vtkComputeQuantiles::ComputeTable( // Fill table for descriptive statistics input. vtkNew inDescStats; - vtkNew os; + vtkSmartPointer os = + vtkSmartPointer::Take(this->CreateOrderStatisticsFilter()); os->SetInputData(vtkStatisticsAlgorithm::INPUT_DATA, inDescStats); os->SetNumberOfIntervals(this->NumberOfIntervals); @@ -228,3 +229,9 @@ void vtkComputeQuantiles::ComputeTable( } } } + +//------------------------------------------------------------------------------ +vtkOrderStatistics* vtkComputeQuantiles::CreateOrderStatisticsFilter() +{ + return vtkOrderStatistics::New(); +} diff --git a/Filters/Statistics/vtkComputeQuantiles.h b/Filters/Statistics/vtkComputeQuantiles.h index 36362185fd0c..d87b80c6f368 100644 --- a/Filters/Statistics/vtkComputeQuantiles.h +++ b/Filters/Statistics/vtkComputeQuantiles.h @@ -41,6 +41,7 @@ class vtkDataSet; class vtkDoubleArray; class vtkFieldData; +class vtkOrderStatistics; class vtkTable; class VTKFILTERSSTATISTICS_EXPORT vtkComputeQuantiles : public vtkTableAlgorithm @@ -70,6 +71,8 @@ protected: void ComputeTable(vtkDataObject*, vtkTable*, vtkIdType); + virtual vtkOrderStatistics* CreateOrderStatisticsFilter(); + int FieldAssociation = -1; int NumberOfIntervals = 4; -- GitLab From 9f88697f93014b4758ffaa66088dad0cb3061b9e Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sat, 14 May 2022 00:01:32 -0400 Subject: [PATCH 0182/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 94687c05139f..10d54789e106 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220513) +set(VTK_BUILD_VERSION 20220514) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From ff36a944f3c368ae5da9eec6b504afdb6645cd8e Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sat, 14 May 2022 20:11:12 +0200 Subject: [PATCH 0183/1015] Add support for playing client data and partial support for recording Add support for playing client data in vtkInteractorEventRecorder with the following formatting: [...] dataType [dataNum] [dataVal] The only supported dataType being StringArray. Recording client data is only supported for drop files events --- Rendering/Core/vtkInteractorEventRecorder.cxx | 63 ++++++++++++++++--- Rendering/Core/vtkInteractorEventRecorder.h | 20 +++++- 2 files changed, 72 insertions(+), 11 deletions(-) diff --git a/Rendering/Core/vtkInteractorEventRecorder.cxx b/Rendering/Core/vtkInteractorEventRecorder.cxx index cdd05ed05363..dc28d9678b1e 100644 --- a/Rendering/Core/vtkInteractorEventRecorder.cxx +++ b/Rendering/Core/vtkInteractorEventRecorder.cxx @@ -17,6 +17,7 @@ #include "vtkCallbackCommand.h" #include "vtkObjectFactory.h" #include "vtkRenderWindowInteractor.h" +#include "vtkStringArray.h" #include #include @@ -27,7 +28,7 @@ vtkStandardNewMacro(vtkInteractorEventRecorder); -float vtkInteractorEventRecorder::StreamVersion = 1.1f; +float vtkInteractorEventRecorder::StreamVersion = 1.2f; //------------------------------------------------------------------------------ vtkInteractorEventRecorder::vtkInteractorEventRecorder() @@ -297,7 +298,7 @@ void vtkInteractorEventRecorder::ProcessCharEvent( //------------------------------------------------------------------------------ void vtkInteractorEventRecorder::ProcessEvents( - vtkObject* object, unsigned long event, void* clientData, void* vtkNotUsed(callData)) + vtkObject* object, unsigned long event, void* clientData, void* callData) { vtkInteractorEventRecorder* self = reinterpret_cast(clientData); vtkRenderWindowInteractor* rwi = static_cast(object); @@ -333,7 +334,7 @@ void vtkInteractorEventRecorder::ProcessEvents( m |= ModifierKey::AltKey; } self->WriteEvent(vtkCommand::GetStringFromEventId(event), rwi->GetEventPosition(), m, - rwi->GetKeyCode(), rwi->GetRepeatCount(), rwi->GetKeySym()); + rwi->GetKeyCode(), rwi->GetRepeatCount(), rwi->GetKeySym(), callData); } } self->OutputStream->flush(); @@ -341,18 +342,42 @@ void vtkInteractorEventRecorder::ProcessEvents( } //------------------------------------------------------------------------------ -void vtkInteractorEventRecorder::WriteEvent( - const char* event, int pos[2], int modifiers, int keyCode, int repeatCount, char* keySym) +void vtkInteractorEventRecorder::WriteEvent(const char* event, int pos[2], int modifiers, + int keyCode, int repeatCount, char* keySym, void* callData) { *this->OutputStream << event << " " << pos[0] << " " << pos[1] << " " << modifiers << " " << keyCode << " " << repeatCount << " "; if (keySym) { - *this->OutputStream << keySym << "\n"; + *this->OutputStream << keySym; + } + else + { + *this->OutputStream << "0"; + } + + unsigned int eventId = vtkCommand::GetEventIdFromString(event); + if (eventId == vtkCommand::DropFilesEvent) + { + *this->OutputStream << static_cast(vtkEventDataType::StringArray); + // This should go into its own method once more events are supported + vtkStringArray* filesArr = static_cast(callData); + vtkIdType dataNum = filesArr->GetNumberOfValues(); + + *this->OutputStream << dataNum; + + if (dataNum > 0) + { + for (vtkIdType i = 0; i < dataNum; i++) + { + *this->OutputStream << filesArr->GetValue(i); + } + } + *this->OutputStream << "\n"; } else { - *this->OutputStream << "0\n"; + *this->OutputStream << static_cast(vtkEventDataType::None) << "\n"; } } @@ -418,6 +443,28 @@ void vtkInteractorEventRecorder::ReadEvent(const std::string& line) iss >> repeatCount; iss >> keySym; + void* callData = nullptr; + vtkSmartPointer stringArray; + if (this->CurrentStreamVersion >= 1.2) + { + int tmp; + iss >> tmp; + vtkEventDataType dataType = static_cast(tmp); + if (dataType == vtkEventDataType::StringArray) + { + vtkIdType dataNum; + iss >> dataNum; + stringArray = vtkSmartPointer::New(); + for (vtkIdType i = 0; i < dataNum; i++) + { + std::string str; + iss >> str; + stringArray->InsertNextValue(str); + } + callData = stringArray.Get(); + } + } + this->Interactor->SetEventPosition(pos); this->Interactor->SetControlKey(ctrlKey); this->Interactor->SetShiftKey(shiftKey); @@ -426,7 +473,7 @@ void vtkInteractorEventRecorder::ReadEvent(const std::string& line) this->Interactor->SetRepeatCount(repeatCount); this->Interactor->SetKeySym(keySym); - this->Interactor->InvokeEvent(ievent, nullptr); + this->Interactor->InvokeEvent(ievent, callData); } } assert(iss.good() || iss.eof()); diff --git a/Rendering/Core/vtkInteractorEventRecorder.h b/Rendering/Core/vtkInteractorEventRecorder.h index ff19095cd050..b1ed92f0f96c 100644 --- a/Rendering/Core/vtkInteractorEventRecorder.h +++ b/Rendering/Core/vtkInteractorEventRecorder.h @@ -23,9 +23,16 @@ * back and invoke them on an vtkRenderWindowInteractor. (Note: the events * can also be played back from a file or string.) * + * Event client data can be recorded as args and will be provided on replay. + * The following event current support data to be recorded: + * - DropFilesEvents: record a string array + * * The format of the event file is simple. It is: - * EventName X Y ctrl shift keycode repeatCount keySym + * EventName X Y ctrl shift keycode repeatCount keySym dataType [dataNum] [dataVal] [dataVal] * The format also allows "#" comments. + * dataType is defined as follows: + * - 0 -> None + * - 1 -> StringArray * * @sa * vtkInteractorObserver vtkCallback @@ -48,6 +55,13 @@ public: vtkTypeMacro(vtkInteractorEventRecorder, vtkInteractorObserver); void PrintSelf(ostream& os, vtkIndent indent) override; + // enumeration of data type + enum class vtkEventDataType : int + { + None = 0, + StringArray + }; + // Satisfy the superclass API. Enable/disable listening for events. void SetEnabled(int) override; void SetInteractor(vtkRenderWindowInteractor* iren) override; @@ -126,8 +140,8 @@ protected: static void ProcessEvents( vtkObject* object, unsigned long event, void* clientdata, void* calldata); - virtual void WriteEvent( - const char* event, int pos[2], int modifiers, int keyCode, int repeatCount, char* keySym); + virtual void WriteEvent(const char* event, int pos[2], int modifiers, int keyCode, + int repeatCount, char* keySym, void* callData = nullptr); VTK_DEPRECATED_IN_9_2_0( "This method was not used at all and has been replaced by ReadEvent(const std::string&)") -- GitLab From 4a0fd19067635e043ef0b6022d8c09d788ab4e5f Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sun, 15 May 2022 00:01:20 -0400 Subject: [PATCH 0184/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 10d54789e106..5b38f1fc1871 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220514) +set(VTK_BUILD_VERSION 20220515) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From a298292e93a89d059e2223ad589bd268bb547bc9 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Sun, 15 May 2022 09:14:12 +0200 Subject: [PATCH 0185/1015] Exclude TestGlyph3DMapperMasking from STDThread ci --- .gitlab/ci/ctest_exclusions.cmake | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/.gitlab/ci/ctest_exclusions.cmake b/.gitlab/ci/ctest_exclusions.cmake index 2c5607957694..67235b6fd3f9 100644 --- a/.gitlab/ci/ctest_exclusions.cmake +++ b/.gitlab/ci/ctest_exclusions.cmake @@ -237,7 +237,11 @@ if ("$ENV{CMAKE_CONFIGURATION}" MATCHES "stdthread") list(APPEND test_exclusions # Timeout; needs investigated # See #18477 - "^VTK::FiltersModelingPython-TestCookieCutter4$") + "^VTK::FiltersModelingPython-TestCookieCutter4$" + + # Masking is inconsistent with STDThread + # See #18549 + "^VTK::RenderingOpenGL2Cxx-TestGlyph3DMapperMasking$") endif () string(REPLACE ";" "|" test_exclusions "${test_exclusions}") -- GitLab From 184da09cef1c44fb8876651d51b1e5f98261eed7 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Mon, 16 May 2022 00:02:29 -0400 Subject: [PATCH 0186/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 5b38f1fc1871..0128992a5aaa 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220515) +set(VTK_BUILD_VERSION 20220516) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 902694406d103ad8291bc747b8b448f7c4a97ba9 Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Tue, 10 May 2022 11:16:48 +0200 Subject: [PATCH 0187/1015] Allow arbitrary number of lights for volumes Refactor the system of lights passed as uniforms in vtkOpenGLGPUVolumeRayCastMapper for performance, but also to allow user to set more than 6 lights (current hard-coded limit) --- .../vtkOpenGLGPUVolumeRayCastMapper.cxx | 230 ++++++++-------- .../VolumeOpenGL2/vtkVolumeShaderComposer.h | 253 ++++++++---------- 2 files changed, 239 insertions(+), 244 deletions(-) diff --git a/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx b/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx index 33086d13d336..f260f6c08385 100644 --- a/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx +++ b/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx @@ -133,8 +133,9 @@ public: this->LastRenderToImageWindowSize[1] = 0; this->CurrentSelectionPass = vtkHardwareSelector::MIN_KNOWN_PASS - 1; - this->NumberOfLights = 0; - this->LightComplexity = 0; + this->TotalNumberOfLights = 0; + this->NumberPositionalLights = 0; + this->DefaultLighting = true; this->NeedToInitializeResources = false; this->ShaderCache = nullptr; @@ -222,6 +223,8 @@ public: static void ToFloat(T* in, float* out, int noOfComponents); template static void ToFloat(T (&in)[3], float (&out)[3]); + template + static std::array ToFloat(T* in); template static void ToFloat(T (&in)[2], float (&out)[2]); template @@ -359,7 +362,10 @@ public: void FinishRendering(int numComponents); - inline bool ShaderRebuildNeeded(vtkCamera* cam, vtkVolume* vol, vtkMTimeType renderPassTime); + vtkMTimeType LastModifiedLightTime(vtkLightCollection* lights); + + inline bool ShaderRebuildNeeded( + vtkCamera* cam, vtkVolume* vol, vtkMTimeType renderPassTime, vtkRenderer* ren); bool VolumePropertyChanged = true; //@{ @@ -445,8 +451,9 @@ public: int LastDepthPassWindowSize[2]; int LastRenderToImageWindowSize[2]; - int NumberOfLights; - int LightComplexity; + int TotalNumberOfLights; + bool DefaultLighting; + int NumberPositionalLights; std::ostringstream ExtensionsStringStream; @@ -551,6 +558,18 @@ void vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::ToFloat(T (&in)[3], float (&o out[2] = static_cast(in[2]); } +//------------------------------------------------------------------------------ +template +std::array vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::ToFloat(T* in) +{ + std::array out; + for (int i = 0; i < N; i++) + { + out[i] = static_cast(in[i]); + } + return out; +} + //------------------------------------------------------------------------------ template void vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::ToFloat(T (&in)[2], float (&out)[2]) @@ -849,7 +868,7 @@ void vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::SetLightingShaderParameters( prog->SetUniform1fv("in_shininess", numberOfSamplers, specularPower); // Set advanced lighting features - if (vol && !vol->GetProperty()->GetShade()) + if ((vol && !vol->GetProperty()->GetShade()) || this->TotalNumberOfLights == 0) { return; } @@ -861,49 +880,36 @@ void vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::SetLightingShaderParameters( vtkTransform* viewTF = cam->GetModelViewTransformObject(); // Bind some light settings - int numberOfLights = 0; vtkLightCollection* lc = ren->GetLights(); vtkLight* light; - /* - XXX: This limit of lights is not a "real" limit in VTK. It is inherent to the way - the mapper was designed : there's also a trailing '6' in vtkShaderComposer, written - directly inside the built shader code - */ - constexpr int maxLights = 6; - vtkCollectionSimpleIterator sit; - float lightAmbientColor[maxLights][3]; - float lightDiffuseColor[maxLights][3]; - float lightSpecularColor[maxLights][3]; - float lightDirection[maxLights][3]; + // those light parameters are used by both positional and directional lights + std::vector> lightAmbientColor(this->TotalNumberOfLights); + std::vector> lightDiffuseColor(this->TotalNumberOfLights); + std::vector> lightSpecularColor(this->TotalNumberOfLights); + std::vector> lightDirection(this->TotalNumberOfLights); + // so we have TotalNumberOfLights 3-vectors by parameter, and we organize them : + // [positionalLight1,..., positionalLight_M, directionalLight1, ...] + int idxPositional = 0; + int idxDirectional = this->NumberPositionalLights; + int idxLight = 0; for (lc->InitTraversal(sit); (light = lc->GetNextLight(sit));) { float status = light->GetSwitch(); if (status > 0.0) { - - if (numberOfLights >= maxLights) - { - vtkGenericWarningMacro( - "Currently, vtkOpenGLGPUVolumeRayCastMapper only supports 6 active lights or less. " - "Only the 6 first lights will be considered, the others will be ignored."); - break; - } - + idxLight = light->GetPositional() ? idxPositional : idxDirectional; double* aColor = light->GetAmbientColor(); double* dColor = light->GetDiffuseColor(); double* sColor = light->GetSpecularColor(); double intensity = light->GetIntensity(); - lightAmbientColor[numberOfLights][0] = aColor[0] * intensity; - lightAmbientColor[numberOfLights][1] = aColor[1] * intensity; - lightAmbientColor[numberOfLights][2] = aColor[2] * intensity; - lightDiffuseColor[numberOfLights][0] = dColor[0] * intensity; - lightDiffuseColor[numberOfLights][1] = dColor[1] * intensity; - lightDiffuseColor[numberOfLights][2] = dColor[2] * intensity; - lightSpecularColor[numberOfLights][0] = sColor[0] * intensity; - lightSpecularColor[numberOfLights][1] = sColor[1] * intensity; - lightSpecularColor[numberOfLights][2] = sColor[2] * intensity; + for (int i = 0; i < 3; i++) + { + lightAmbientColor[idxLight][i] = aColor[i] * intensity; + lightDiffuseColor[idxLight][i] = dColor[i] * intensity; + lightSpecularColor[idxLight][i] = sColor[i] * intensity; + } // Get required info from light double* lfp = light->GetTransformedFocalPoint(); double* lp = light->GetTransformedPosition(); @@ -911,66 +917,58 @@ void vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::SetLightingShaderParameters( vtkMath::Subtract(lfp, lp, lightDir); vtkMath::Normalize(lightDir); double* tDir = viewTF->TransformNormal(lightDir); - lightDirection[numberOfLights][0] = tDir[0]; - lightDirection[numberOfLights][1] = tDir[1]; - lightDirection[numberOfLights][2] = tDir[2]; - numberOfLights++; + lightDirection[idxLight] = ToFloat<3>(tDir); + light->GetPositional() ? idxPositional++ : idxDirectional++; } } - prog->SetUniform3fv("in_lightAmbientColor", numberOfLights, lightAmbientColor); - prog->SetUniform3fv("in_lightDiffuseColor", numberOfLights, lightDiffuseColor); - prog->SetUniform3fv("in_lightSpecularColor", numberOfLights, lightSpecularColor); - prog->SetUniform3fv("in_lightDirection", numberOfLights, lightDirection); - prog->SetUniformi("in_numberOfLights", numberOfLights); + prog->SetUniform3fv( + "in_lightAmbientColor", this->TotalNumberOfLights, lightAmbientColor.data()->data()); + prog->SetUniform3fv( + "in_lightDiffuseColor", this->TotalNumberOfLights, lightDiffuseColor.data()->data()); + prog->SetUniform3fv( + "in_lightSpecularColor", this->TotalNumberOfLights, lightSpecularColor.data()->data()); + prog->SetUniform3fv( + "in_lightDirection", this->TotalNumberOfLights, lightDirection.data()->data()); - // we are done unless we have positional lights - if (this->LightComplexity < 3) + // we are done if we only had default lighting + if (this->DefaultLighting) { return; } // if positional lights pass down more parameters - float lightAttenuation[maxLights][3]; - float lightPosition[maxLights][3]; - float lightConeAngle[maxLights]; - float lightExponent[maxLights]; - int lightPositional[maxLights]; - numberOfLights = 0; - for (lc->InitTraversal(sit); (light = lc->GetNextLight(sit));) - { - float status = light->GetSwitch(); - if (status > 0.0) + // these parameters are only used by positional lights, + // so there are only NumberPositionalLights of them + if (this->NumberPositionalLights > 0) + { + std::vector> lightAttenuation(this->NumberPositionalLights); + std::vector> lightPosition(this->NumberPositionalLights); + std::vector lightConeAngle(this->NumberPositionalLights); + std::vector lightExponent(this->NumberPositionalLights); + idxPositional = 0; + for (lc->InitTraversal(sit); (light = lc->GetNextLight(sit));) { - - if (numberOfLights >= maxLights) + float status = light->GetSwitch(); + if (status > 0.0 && light->GetPositional()) { - vtkGenericWarningMacro( - "Currently, vtkOpenGLGPUVolumeRayCastMapper only supports 6 active lights or less. " - "Only the 6 first lights will be considered, the others will be ignored."); - break; + double* attn = light->GetAttenuationValues(); + lightAttenuation[idxPositional] = ToFloat<3>(attn); + lightExponent[idxPositional] = light->GetExponent(); + lightConeAngle[idxPositional] = light->GetConeAngle(); + double* lp = light->GetTransformedPosition(); + double* tlp = viewTF->TransformPoint(lp); + lightPosition[idxPositional] = ToFloat<3>(tlp); + idxPositional++; } - - double* attn = light->GetAttenuationValues(); - lightAttenuation[numberOfLights][0] = attn[0]; - lightAttenuation[numberOfLights][1] = attn[1]; - lightAttenuation[numberOfLights][2] = attn[2]; - lightExponent[numberOfLights] = light->GetExponent(); - lightConeAngle[numberOfLights] = light->GetConeAngle(); - double* lp = light->GetTransformedPosition(); - double* tlp = viewTF->TransformPoint(lp); - lightPosition[numberOfLights][0] = tlp[0]; - lightPosition[numberOfLights][1] = tlp[1]; - lightPosition[numberOfLights][2] = tlp[2]; - lightPositional[numberOfLights] = light->GetPositional(); - numberOfLights++; } + prog->SetUniform3fv( + "in_lightAttenuation", this->NumberPositionalLights, lightAttenuation.data()->data()); + prog->SetUniform3fv( + "in_lightPosition", this->NumberPositionalLights, lightPosition.data()->data()); + prog->SetUniform1fv("in_lightExponent", this->NumberPositionalLights, lightExponent.data()); + prog->SetUniform1fv("in_lightConeAngle", this->NumberPositionalLights, lightConeAngle.data()); } - prog->SetUniform3fv("in_lightAttenuation", numberOfLights, lightAttenuation); - prog->SetUniform1iv("in_lightPositional", numberOfLights, lightPositional); - prog->SetUniform3fv("in_lightPosition", numberOfLights, lightPosition); - prog->SetUniform1fv("in_lightExponent", numberOfLights, lightExponent); - prog->SetUniform1fv("in_lightConeAngle", numberOfLights, lightConeAngle); } //------------------------------------------------------------------------------ @@ -2339,11 +2337,12 @@ void vtkOpenGLGPUVolumeRayCastMapper::ReplaceShaderBase( fragmentShader, "//VTK::CallWorker::Impl", vtkvolume::WorkerImplementation(ren, this, vol)); vtkShaderProgram::Substitute(fragmentShader, "//VTK::Base::Dec", - vtkvolume::BaseDeclarationFragment(ren, this, this->AssembledInputs, this->Impl->NumberOfLights, - this->Impl->LightComplexity, numComps, independentComponents)); + vtkvolume::BaseDeclarationFragment(ren, this, this->AssembledInputs, + this->Impl->TotalNumberOfLights, this->Impl->NumberPositionalLights, + this->Impl->DefaultLighting, numComps, independentComponents)); vtkShaderProgram::Substitute(fragmentShader, "//VTK::Base::Init", - vtkvolume::BaseInit(ren, this, this->AssembledInputs, this->Impl->LightComplexity)); + vtkvolume::BaseInit(ren, this, this->AssembledInputs, this->Impl->DefaultLighting)); vtkShaderProgram::Substitute( fragmentShader, "//VTK::Base::Impl", vtkvolume::BaseImplementation(ren, this, vol)); @@ -2452,7 +2451,7 @@ void vtkOpenGLGPUVolumeRayCastMapper::ReplaceShaderCompute( vtkShaderProgram::Substitute(fragmentShader, "//VTK::ComputeLighting::Dec", vtkvolume::ComputeLightingMultiDeclaration(ren, this, vol, numComps, independentComponents, - this->Impl->NumberOfLights, this->Impl->LightComplexity)); + this->Impl->TotalNumberOfLights, this->Impl->DefaultLighting)); } else { @@ -2503,7 +2502,8 @@ void vtkOpenGLGPUVolumeRayCastMapper::ReplaceShaderCompute( vtkShaderProgram::Substitute(fragmentShader, "//VTK::ComputeLighting::Dec", vtkvolume::ComputeLightingDeclaration(ren, this, vol, numComps, independentComponents, - this->Impl->NumberOfLights, this->Impl->LightComplexity)); + this->Impl->TotalNumberOfLights, this->Impl->NumberPositionalLights, + this->Impl->DefaultLighting)); } vtkShaderProgram::Substitute(fragmentShader, "//VTK::ComputeRayDirection::Dec", @@ -2644,37 +2644,39 @@ void vtkOpenGLGPUVolumeRayCastMapper::ReplaceShaderValues( vtkVolumeProperty* volumeProperty = vol->GetProperty(); auto shaderProperty = vtkOpenGLShaderProperty::SafeDownCast(vol->GetShaderProperty()); + this->Impl->TotalNumberOfLights = 0; + this->Impl->NumberPositionalLights = 0; + this->Impl->DefaultLighting = false; + if (volumeProperty->GetShade()) { vtkLightCollection* lc = ren->GetLights(); vtkLight* light; - this->Impl->NumberOfLights = 0; - // Compute light complexity. + // Compute light information. vtkCollectionSimpleIterator sit; for (lc->InitTraversal(sit); (light = lc->GetNextLight(sit));) { float status = light->GetSwitch(); if (status > 0.0) { - this->Impl->NumberOfLights++; - if (this->Impl->LightComplexity == 0) + if (this->Impl->TotalNumberOfLights == 0) { - this->Impl->LightComplexity = 1; + // we set default lighting to true for the first light + this->Impl->DefaultLighting = true; + } + this->Impl->TotalNumberOfLights++; + if (light->GetPositional()) + { + this->Impl->NumberPositionalLights++; } } - if (this->Impl->LightComplexity == 1 && - (this->Impl->NumberOfLights > 1 || light->GetIntensity() != 1.0 || + if (this->Impl->DefaultLighting && + (this->Impl->TotalNumberOfLights > 1 || light->GetIntensity() != 1.0 || light->GetLightType() != VTK_LIGHT_TYPE_HEADLIGHT)) { - this->Impl->LightComplexity = 2; - } - - if (this->Impl->LightComplexity < 3 && (light->GetPositional())) - { - this->Impl->LightComplexity = 3; - break; + this->Impl->DefaultLighting = false; } } } @@ -3194,7 +3196,7 @@ void vtkOpenGLGPUVolumeRayCastMapper::GPURender(vtkRenderer* ren, vtkVolume* vol } vtkVolumeStateRAII glState(renWin->GetState(), this->Impl->PreserveGLState); - if (this->Impl->ShaderRebuildNeeded(cam, vol, renderPassTime)) + if (this->Impl->ShaderRebuildNeeded(cam, vol, renderPassTime, ren)) { this->Impl->LastProjectionParallel = cam->GetParallelProjection(); this->BuildShader(ren); @@ -3231,16 +3233,32 @@ void vtkOpenGLGPUVolumeRayCastMapper::GPURender(vtkRenderer* ren, vtkVolume* vol glFinish(); } +//------------------------------------------------------------------------------ +vtkMTimeType vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::LastModifiedLightTime( + vtkLightCollection* lights) +{ + vtkMTimeType lastModified = lights->GetMTime(); + vtkLight* light; + vtkCollectionSimpleIterator sit; + for (lights->InitTraversal(sit); (light = lights->GetNextLight(sit));) + { + lastModified = std::max(lastModified, light->GetMTime()); + } + return lastModified; +} + //------------------------------------------------------------------------------ bool vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::ShaderRebuildNeeded( - vtkCamera* cam, vtkVolume* vol, vtkMTimeType renderPassTime) + vtkCamera* cam, vtkVolume* vol, vtkMTimeType renderPassTime, vtkRenderer* ren) { return (this->NeedToInitializeResources || this->VolumePropertyChanged || vol->GetShaderProperty()->GetShaderMTime() > this->ShaderBuildTime.GetMTime() || this->Parent->GetMTime() > this->ShaderBuildTime.GetMTime() || cam->GetParallelProjection() != this->LastProjectionParallel || this->SelectionStateTime.GetMTime() > this->ShaderBuildTime.GetMTime() || - renderPassTime > this->ShaderBuildTime); + renderPassTime > this->ShaderBuildTime || + ren->GetLights()->GetMTime() > this->ShaderBuildTime.GetMTime() || + this->LastModifiedLightTime(ren->GetLights()) > this->ShaderBuildTime.GetMTime()); } //------------------------------------------------------------------------------ @@ -3259,7 +3277,9 @@ void vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::RenderWithDepthPass( cam->GetParallelProjection() != this->LastProjectionParallel || this->SelectionStateTime.GetMTime() > this->ShaderBuildTime.GetMTime() || renderPassTime > this->ShaderBuildTime || - shaderProperty->GetShaderMTime() > this->ShaderBuildTime) + shaderProperty->GetShaderMTime() > this->ShaderBuildTime || + ren->GetLights()->GetMTime() > this->ShaderBuildTime.GetMTime() || + this->LastModifiedLightTime(ren->GetLights()) > this->ShaderBuildTime.GetMTime()) { this->LastProjectionParallel = cam->GetParallelProjection(); diff --git a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h index 77afcba2cda7..fb8245a71635 100644 --- a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h +++ b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h @@ -149,8 +149,8 @@ std::string BaseDeclarationVertex(vtkRenderer* vtkNotUsed(ren), vtkVolumeMapper* //-------------------------------------------------------------------------- std::string BaseDeclarationFragment(vtkRenderer* vtkNotUsed(ren), vtkVolumeMapper* mapper, - vtkOpenGLGPUVolumeRayCastMapper::VolumeInputMap& inputs, int vtkNotUsed(numberOfLights), - int lightingComplexity, int noOfComponents, int independentComponents) + vtkOpenGLGPUVolumeRayCastMapper::VolumeInputMap& inputs, int totalNumberOfLights, + int numberPositionalLights, bool defaultLighting, int noOfComponents, int independentComponents) { const int numInputs = static_cast(inputs.size()); @@ -255,50 +255,53 @@ std::string BaseDeclarationFragment(vtkRenderer* vtkNotUsed(ren), vtkVolumeMappe toShaderStr << "vec4 g_eyePosObjs[" << numInputs << "];\n"; const bool hasGradientOpacity = HasGradientOpacity(inputs); - if (lightingComplexity > 0 || hasGradientOpacity) + if (totalNumberOfLights > 0 || hasGradientOpacity) { toShaderStr << "uniform bool in_twoSidedLighting;\n"; } - if (lightingComplexity == 3) + if (totalNumberOfLights > 0) { - toShaderStr << "vec4 g_fragWorldPos;\n" - "uniform int in_numberOfLights;\n" - "uniform vec3 in_lightAmbientColor[6];\n" - "uniform vec3 in_lightDiffuseColor[6];\n" - "uniform vec3 in_lightSpecularColor[6];\n" - "uniform vec3 in_lightDirection[6];\n" - "uniform vec3 in_lightPosition[6];\n" - "uniform vec3 in_lightAttenuation[6];\n" - "uniform float in_lightConeAngle[6];\n" - "uniform float in_lightExponent[6];\n" - "uniform int in_lightPositional[6];\n"; - } - else if (lightingComplexity == 2) - { - toShaderStr << "vec4 g_fragWorldPos;\n" - "uniform int in_numberOfLights;\n" - "uniform vec3 in_lightAmbientColor[6];\n" - "uniform vec3 in_lightDiffuseColor[6];\n" - "uniform vec3 in_lightSpecularColor[6];\n" - "uniform vec3 in_lightDirection[6];\n"; - } - else - { - toShaderStr << "uniform vec3 in_lightAmbientColor[1];\n" - "uniform vec3 in_lightDiffuseColor[1];\n" - "uniform vec3 in_lightSpecularColor[1];\n" - "vec4 g_lightPosObj[" - << numInputs - << "];\n" - "vec3 g_ldir[" - << numInputs - << "];\n" - "vec3 g_vdir[" - << numInputs - << "];\n" - "vec3 g_h[" - << numInputs << "];\n"; + std::string totalLights = std::to_string(totalNumberOfLights); + std::string positionalLights = std::to_string(numberPositionalLights); + + if (!defaultLighting) + { + toShaderStr << "#define TOTAL_NUMBER_LIGHTS " << totalLights + << "\n" + "#define NUMBER_POS_LIGHTS " + << positionalLights + << "\n" + "vec4 g_fragWorldPos;\n" + "uniform vec3 in_lightAmbientColor[TOTAL_NUMBER_LIGHTS];\n" + "uniform vec3 in_lightDiffuseColor[TOTAL_NUMBER_LIGHTS];\n" + "uniform vec3 in_lightSpecularColor[TOTAL_NUMBER_LIGHTS];\n" + "uniform vec3 in_lightDirection[TOTAL_NUMBER_LIGHTS];\n"; + if (numberPositionalLights > 0) + { + toShaderStr << "uniform vec3 in_lightPosition[NUMBER_POS_LIGHTS];\n" + "uniform vec3 in_lightAttenuation[NUMBER_POS_LIGHTS];\n" + "uniform float in_lightConeAngle[NUMBER_POS_LIGHTS];\n" + "uniform float in_lightExponent[NUMBER_POS_LIGHTS];\n"; + } + } + else + { + toShaderStr << "uniform vec3 in_lightAmbientColor[1];\n" + "uniform vec3 in_lightDiffuseColor[1];\n" + "uniform vec3 in_lightSpecularColor[1];\n" + "vec4 g_lightPosObj[" + << numInputs + << "];\n" + "vec3 g_ldir[" + << numInputs + << "];\n" + "vec3 g_vdir[" + << numInputs + << "];\n" + "vec3 g_h[" + << numInputs << "];\n"; + } } if (noOfComponents > 1 && independentComponents) @@ -357,7 +360,7 @@ std::string BaseDeclarationFragment(vtkRenderer* vtkNotUsed(ren), vtkVolumeMappe //-------------------------------------------------------------------------- std::string BaseInit(vtkRenderer* vtkNotUsed(ren), vtkVolumeMapper* mapper, - vtkOpenGLGPUVolumeRayCastMapper::VolumeInputMap& inputs, int lightingComplexity) + vtkOpenGLGPUVolumeRayCastMapper::VolumeInputMap& inputs, bool defaultLighting) { vtkOpenGLGPUVolumeRayCastMapper* glMapper = vtkOpenGLGPUVolumeRayCastMapper::SafeDownCast(mapper); vtkVolume* vol = inputs.begin()->second.Volume; @@ -450,7 +453,7 @@ std::string BaseInit(vtkRenderer* vtkNotUsed(ren), vtkVolumeMapper* mapper, \n // Flag to determine if voxel should be considered for the rendering\ \n g_skip = false;"; - if (vol->GetProperty()->GetShade() && lightingComplexity == 1) + if (vol->GetProperty()->GetShade() && defaultLighting) { shaderStr << "\ \n // Light position in dataset space"; @@ -1120,8 +1123,8 @@ std::string ComputeDensityGradientDeclaration(vtkOpenGLGPUVolumeRayCastMapper* m //-------------------------------------------------------------------------- std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMapper* mapper, - vtkVolume* vol, int noOfComponents, int independentComponents, int vtkNotUsed(numberOfLights), - int lightingComplexity) + vtkVolume* vol, int noOfComponents, int independentComponents, int totalNumberOfLights, + int numberPositionalLights, bool defaultLighting) { auto glMapper = vtkOpenGLGPUVolumeRayCastMapper::SafeDownCast(mapper); vtkVolumeProperty* volProperty = vol->GetProperty(); @@ -1174,7 +1177,7 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa if (shadeReqd) { - if (lightingComplexity == 1) + if (defaultLighting) { shaderStr += std::string("\ \n vec3 diffuse = vec3(0.0);\ @@ -1216,59 +1219,7 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n diffuse + specular;\ \n"); } - else if (lightingComplexity == 2) - { - shaderStr += std::string("\ - \n g_fragWorldPos = in_modelViewMatrix * in_volumeMatrix[0] *\ - \n in_textureDatasetMatrix[0] * vec4(g_dataPos, 1.0);\ - \n if (g_fragWorldPos.w != 0.0)\ - \n {\ - \n g_fragWorldPos /= g_fragWorldPos.w;\ - \n }\ - \n vec3 vdir = normalize(-g_fragWorldPos.xyz);\ - \n vec3 normal = shading_gradient.xyz;\ - \n vec3 ambient = vec3(0.0);\ - \n vec3 diffuse = vec3(0.0);\ - \n vec3 specular = vec3(0.0);\ - \n float normalLength = length(normal);\ - \n if (normalLength > 0.0)\ - \n {\ - \n normal = normalize((in_textureToEye[0] * vec4(normal, 0.0)).xyz);\ - \n }\ - \n else\ - \n {\ - \n normal = vec3(0.0, 0.0, 0.0);\ - \n }\ - \n for (int lightNum = 0; lightNum < in_numberOfLights; lightNum++)\ - \n {\ - \n vec3 ldir = in_lightDirection[lightNum].xyz;\ - \n float nDotL = dot(normal, ldir);\ - \n if (nDotL < 0.0 && in_twoSidedLighting)\ - \n {\ - \n nDotL = -nDotL;\ - \n }\ - \n if (nDotL > 0.0)\ - \n {\ - \n diffuse += in_lightDiffuseColor[lightNum] * nDotL;\ - \n vec3 r = normalize(2.0 * nDotL * normal - ldir);\ - \n float rDotV = dot(r, -vdir);\ - \n if (rDotV < 0.0 && in_twoSidedLighting)\ - \n {\ - \n rDotV = -rDotV;\ - \n }\ - \n if (rDotV > 0.0)\ - \n {\ - \n specular = in_lightSpecularColor[lightNum] *\ - \n pow(rDotV, in_shininess[component]);\ - \n }\ - \n }\ - \n ambient += in_lightAmbientColor[lightNum];\ - \n }\ - \n finalColor.xyz = in_ambient[component] * ambient +\ - \n in_diffuse[component] * diffuse * color.rgb +\ - \n in_specular[component] * specular;"); - } - else if (lightingComplexity == 3) + else if (totalNumberOfLights > 0) { shaderStr += std::string("\ \n g_fragWorldPos = in_modelViewMatrix * in_volumeMatrix[0] *\ @@ -1283,50 +1234,45 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n vec3 specular = vec3(0,0,0);\ \n vec3 vertLightDirection;\ \n vec3 normal = normalize((in_textureToEye[0] * vec4(shading_gradient.xyz, 0.0)).xyz);\ - \n vec3 lightDir;\ - \n for (int lightNum = 0; lightNum < in_numberOfLights; lightNum++)\ - \n {\ + \n vec3 lightDir;"); + + if (numberPositionalLights > 0) + { + shaderStr += std::string("\n for (int posNum = 0; posNum < NUMBER_POS_LIGHTS; posNum++)\ + \n {\ \n float attenuation = 1.0;\ - \n // directional\ - \n lightDir = in_lightDirection[lightNum];\ - \n if (in_lightPositional[lightNum] == 0)\ + \n lightDir = in_lightDirection[posNum];\ + \n vertLightDirection = (g_fragWorldPos.xyz - in_lightPosition[posNum]);\ + \n float distance = length(vertLightDirection);\ + \n vertLightDirection = normalize(vertLightDirection);\ + \n attenuation = 1.0 /\ + \n (in_lightAttenuation[posNum].x\ + \n + in_lightAttenuation[posNum].y * distance\ + \n + in_lightAttenuation[posNum].z * distance * distance);\ + \n // per OpenGL standard cone angle is 90 or less for a spot light\ + \n if (in_lightConeAngle[posNum] <= 90.0)\ + \n {\ + \n float coneDot = dot(vertLightDirection, lightDir);\ + \n // if inside the cone\ + \n if (coneDot >= cos(radians(in_lightConeAngle[posNum])))\ \n {\ - \n vertLightDirection = lightDir;\ + \n attenuation = attenuation * pow(coneDot, in_lightExponent[posNum]);\ \n }\ - \n else\ + \n else\ \n {\ - \n vertLightDirection = (g_fragWorldPos.xyz - in_lightPosition[lightNum]);\ - \n float distance = length(vertLightDirection);\ - \n vertLightDirection = normalize(vertLightDirection);\ - \n attenuation = 1.0 /\ - \n (in_lightAttenuation[lightNum].x\ - \n + in_lightAttenuation[lightNum].y * distance\ - \n + in_lightAttenuation[lightNum].z * distance * distance);\ - \n // per OpenGL standard cone angle is 90 or less for a spot light\ - \n if (in_lightConeAngle[lightNum] <= 90.0)\ - \n {\ - \n float coneDot = dot(vertLightDirection, lightDir);\ - \n // if inside the cone\ - \n if (coneDot >= cos(radians(in_lightConeAngle[lightNum])))\ - \n {\ - \n attenuation = attenuation * pow(coneDot, in_lightExponent[lightNum]);\ - \n }\ - \n else\ - \n {\ - \n attenuation = 0.0;\ - \n }\ - \n }\ + \n attenuation = 0.0;\ \n }\ - \n // diffuse and specular lighting\ - \n float nDotL = dot(normal, vertLightDirection);\ - \n if (nDotL < 0.0 && in_twoSidedLighting)\ + \n }\ + \n \ + \n float nDotL = dot(normal, vertLightDirection);\ + \n if (nDotL < 0.0 && in_twoSidedLighting)\ \n {\ - \n nDotL = -nDotL;\ + \n nDotL = -nDotL;\ \n }\ - \n if (nDotL > 0.0)\ + \n if (nDotL > 0.0)\ \n {\ \n float df = max(0.0, attenuation * nDotL);\ - \n diffuse += (df * in_lightDiffuseColor[lightNum]);\ + \n diffuse += (df * in_lightDiffuseColor[posNum]);\ \n vec3 r = normalize(2.0 * nDotL * normal - vertLightDirection);\ \n float rDotV = dot(-viewDirection, r);\ \n if (rDotV < 0.0 && in_twoSidedLighting)\ @@ -1336,10 +1282,39 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n if (rDotV > 0.0)\ \n {\ \n float sf = attenuation * pow(rDotV, in_shininess[component]);\ - \n specular += (sf * in_lightSpecularColor[lightNum]);\ + \n specular += (sf * in_lightSpecularColor[posNum]);\ + \n }\ + \n }\ + \n ambient += in_lightAmbientColor[posNum];\ + \n }"); + } + + shaderStr += std::string( + "\n for (int dirNum = NUMBER_POS_LIGHTS; dirNum < TOTAL_NUMBER_LIGHTS; dirNum++)\ + \n {\ + \n vertLightDirection = in_lightDirection[dirNum];\ + \n float nDotL = dot(normal, vertLightDirection);\ + \n if (nDotL < 0.0 && in_twoSidedLighting)\ + \n {\ + \n nDotL = -nDotL;\ + \n }\ + \n if (nDotL > 0.0)\ + \n {\ + \n float df = max(0.0, nDotL);\ + \n diffuse += (df * in_lightDiffuseColor[dirNum]);\ + \n vec3 r = normalize(2.0 * nDotL * normal - vertLightDirection);\ + \n float rDotV = dot(-viewDirection, r);\ + \n if (rDotV < 0.0 && in_twoSidedLighting)\ + \n {\ + \n rDotV = -rDotV;\ + \n }\ + \n if (rDotV > 0.0)\ + \n {\ + \n float sf = pow(rDotV, in_shininess[component]);\ + \n specular += (sf * in_lightSpecularColor[dirNum]);\ \n }\ \n }\ - \n ambient += in_lightAmbientColor[lightNum];\ + \n ambient += in_lightAmbientColor[dirNum];\ \n }\ \n finalColor.xyz = in_ambient[component] * ambient +\ \n in_diffuse[component] * diffuse * color.rgb +\ @@ -1401,8 +1376,8 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa //-------------------------------------------------------------------------- std::string ComputeLightingMultiDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMapper* mapper, - vtkVolume* vol, int noOfComponents, int independentComponents, int vtkNotUsed(numberOfLights), - int lightingComplexity) + vtkVolume* vol, int noOfComponents, int independentComponents, + int vtkNotUsed(totalNumberOfLights), bool defaultLighting) { auto glMapper = vtkOpenGLGPUVolumeRayCastMapper::SafeDownCast(mapper); vtkVolumeProperty* volProperty = vol->GetProperty(); @@ -1473,7 +1448,7 @@ std::string ComputeLightingMultiDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVol } } - if (shadeReqd && lightingComplexity == 1) + if (shadeReqd && defaultLighting) { shaderStr += std::string("\ \n vec3 diffuse = vec3(0.0);\ -- GitLab From 1ef4227e3e23c16c7ed8be7ed8e94f6ad5a86dc1 Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Mon, 16 May 2022 09:03:35 +0200 Subject: [PATCH 0188/1015] Modify volume test with volume lights Modify this test to use vtk-examples, set real lights, and add a baseline --- Rendering/Volume/Testing/Cxx/CMakeLists.txt | 2 +- .../TestGPUVolumeRayCastMapperManyLights.cxx | 103 ++++++++++++++---- ...PUVolumeRayCastMapperManyLights.png.sha512 | 1 + 3 files changed, 82 insertions(+), 24 deletions(-) create mode 100644 Rendering/Volume/Testing/Data/Baseline/TestGPUVolumeRayCastMapperManyLights.png.sha512 diff --git a/Rendering/Volume/Testing/Cxx/CMakeLists.txt b/Rendering/Volume/Testing/Cxx/CMakeLists.txt index 83ca8e023ac5..36e9c6487a58 100644 --- a/Rendering/Volume/Testing/Cxx/CMakeLists.txt +++ b/Rendering/Volume/Testing/Cxx/CMakeLists.txt @@ -78,7 +78,7 @@ set (VolumeCxxTests TestGPURayCastVolumeUniformGridBlanking.cxx TestGPURayCastVolumeUpdate.cxx TestGPUVolumeRayCastMapper.cxx - TestGPUVolumeRayCastMapperManyLights.cxx,NO_VALID + TestGPUVolumeRayCastMapperManyLights.cxx TestMinIntensityRendering.cxx TestMultiBlockMapper.cxx TestMultiBlockMapperRectilinearGrid.cxx diff --git a/Rendering/Volume/Testing/Cxx/TestGPUVolumeRayCastMapperManyLights.cxx b/Rendering/Volume/Testing/Cxx/TestGPUVolumeRayCastMapperManyLights.cxx index 7da82634f2e2..d1a75731b92d 100644 --- a/Rendering/Volume/Testing/Cxx/TestGPUVolumeRayCastMapperManyLights.cxx +++ b/Rendering/Volume/Testing/Cxx/TestGPUVolumeRayCastMapperManyLights.cxx @@ -18,49 +18,87 @@ #include "vtkCamera.h" #include "vtkColorTransferFunction.h" +#include "vtkFloatArray.h" #include "vtkGPUVolumeRayCastMapper.h" #include "vtkImageData.h" #include "vtkLight.h" #include "vtkNew.h" +#include "vtkNrrdReader.h" #include "vtkPiecewiseFunction.h" -#include "vtkRTAnalyticSource.h" +#include "vtkPointData.h" +#include "vtkRegressionTestImage.h" #include "vtkRenderWindow.h" #include "vtkRenderWindowInteractor.h" #include "vtkRenderer.h" #include "vtkTestErrorObserver.h" +#include "vtkTestUtilities.h" #include "vtkTesting.h" #include "vtkTimerLog.h" #include "vtkVolume.h" #include "vtkVolumeProperty.h" -int TestGPUVolumeRayCastMapperManyLights(int, char*[]) +typedef vtkSmartPointer Transfer2DPtr; +Transfer2DPtr Create2DTransferTooth() +{ + int bins[2] = { 256, 256 }; + Transfer2DPtr image = Transfer2DPtr::New(); + image->SetDimensions(bins[0], bins[1], 1); + image->AllocateScalars(VTK_FLOAT, 4); + vtkFloatArray* arr = vtkFloatArray::SafeDownCast(image->GetPointData()->GetScalars()); + + // Initialize to zero + void* dataPtr = arr->GetVoidPointer(0); + memset(dataPtr, 0, bins[0] * bins[1] * 4 * sizeof(float)); + + // Setting RGBA [1.0, 0,0, 0.05] for a square in the histogram (known) + // containing some of the interesting edges (e.g. tooth root). + for (int j = 0; j < bins[1]; j++) + for (int i = 0; i < bins[0]; i++) + { + if (i > 130 && i < 190 && j < 50) + { + double const jFactor = 256.0 / 50; + + vtkIdType const index = bins[0] * j + i; + double const red = static_cast(i) / bins[0]; + double const green = jFactor * static_cast(j) / bins[1]; + double const blue = jFactor * static_cast(j) / bins[1]; + double const alpha = 0.25 * jFactor * static_cast(j) / bins[0]; + + double color[4] = { red, green, blue, alpha }; + arr->SetTuple(index, color); + } + } + + return image; +} + +//----------------------------------------------------- +int TestGPUVolumeRayCastMapperManyLights(int argc, char* argv[]) { cout << "CTEST_FULL_OUTPUT (Avoid ctest truncation of output)" << endl; - vtkNew wavelet; - wavelet->SetWholeExtent(-10, 10, -10, 10, -10, 10); - wavelet->SetCenter(0.0, 0.0, 0.0); + // Load data + char* fname = vtkTestUtilities::ExpandDataFileName(argc, argv, "Data/tooth.nhdr"); + vtkNew reader; + reader->SetFileName(fname); + reader->Update(); + delete[] fname; vtkNew errorObserver; vtkNew volumeMapper; volumeMapper->SetAutoAdjustSampleDistances(0); volumeMapper->SetSampleDistance(0.5); - volumeMapper->SetInputConnection(wavelet->GetOutputPort()); + volumeMapper->SetInputConnection(reader->GetOutputPort()); volumeMapper->AddObserver(vtkCommand::ErrorEvent, errorObserver); vtkNew volumeProperty; - vtkNew ctf; - ctf->AddRGBPoint(37.3531, 0.0, 0.0, 0.0); - ctf->AddRGBPoint(276.829, 0.0, 0.0, 0.0); - vtkNew pwf; - pwf->AddPoint(37.3531, 0.0); - pwf->AddPoint(276.829, 1.0); - - volumeProperty->SetColor(ctf); - volumeProperty->SetScalarOpacity(pwf); + Transfer2DPtr tf2d = Create2DTransferTooth(); volumeProperty->SetShade(1); + volumeProperty->SetTransferFunctionModeTo2D(); + volumeProperty->SetTransferFunction2D(tf2d); volumeProperty->SetScalarOpacityUnitDistance(1.732); vtkNew volume; @@ -74,27 +112,46 @@ int TestGPUVolumeRayCastMapperManyLights(int, char*[]) vtkNew iren; iren->SetRenderWindow(renderWindow); vtkNew renderer; + renderer->SetTwoSidedLighting(false); renderWindow->AddRenderer(renderer); - int nr_lights = 8; + std::vector> lights = { { { 15.0, -46.0, -22.0, 0.0, 0.0, 0.0 }, + { 15.0, -46.0, -22.0, 0.0, 0.0, 0.0 }, { 107, 10, 235, 42, 52, -9 }, + { 107, 10, 235, 42, 52, -9 }, { 100, 218, 215, 74, 85, 120 }, { -19, 44, -99, 12, 46, 8 }, + { 249, -8, 157, 252, -266, -120 }, { 149, 104, -50, 85, 69, 67 } } }; renderer->RemoveAllLights(); - for (int i = 0; i < nr_lights; i++) + int idx = 0; + for (auto& lightInfo : lights) { vtkNew light; // everything so the volume isn't lighted - light->SetPositional(true); - light->SetPosition(-15.0, 15.0, 0.0); - light->SetFocalPoint(-30.0, 15.0, 0.0); - light->SetConeAngle(1.0); - light->SetIntensity(1.0); + light->SetLightTypeToSceneLight(); + light->SetPositional(idx % 2); + light->SetPosition(lightInfo.data()); + light->SetFocalPoint(lightInfo.data() + 3); + light->SetConeAngle(60.0); + light->SetIntensity(1.0 / (idx + 1)); renderer->AddLight(light); + + idx++; } + renderer->ResetCamera(); + renderer->GetActiveCamera()->SetPosition(179, -372, -18); + renderer->GetActiveCamera()->SetFocalPoint(38, 88, 89); + renderer->GetActiveCamera()->SetViewUp(-0.22, -0.29, 0.93); + renderer->AddVolume(volume); renderer->ResetCamera(); renderWindow->Render(); - return 0; + int retVal = vtkTesting::Test(argc, argv, renderWindow, 90); + if (retVal == vtkRegressionTester::DO_INTERACTOR) + { + iren->Start(); + } + + return !((retVal == vtkTesting::PASSED) || (retVal == vtkTesting::DO_INTERACTOR)); } diff --git a/Rendering/Volume/Testing/Data/Baseline/TestGPUVolumeRayCastMapperManyLights.png.sha512 b/Rendering/Volume/Testing/Data/Baseline/TestGPUVolumeRayCastMapperManyLights.png.sha512 new file mode 100644 index 000000000000..47a1c63007d7 --- /dev/null +++ b/Rendering/Volume/Testing/Data/Baseline/TestGPUVolumeRayCastMapperManyLights.png.sha512 @@ -0,0 +1 @@ +50b514c91c44e2c7c161c612f180721cafda48b231aa01e6b7b8b17f7d3bcf3d9bd30a5c95fd61789124c3238e248b7c6219afcffe55a2c249d91228329d5cd9 -- GitLab From b6b6b901f55d1a15eb61e4dc735f697b44231c4f Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Mon, 16 May 2022 19:10:18 +0200 Subject: [PATCH 0189/1015] Revert "Remove \param incorrect usage" This reverts commit 32ac9bf36b7d0af345a1883a872cbbceea0476a3. --- Rendering/Context2D/vtkContext2D.h | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/Rendering/Context2D/vtkContext2D.h b/Rendering/Context2D/vtkContext2D.h index ba18cef1a5cb..a7b74ac5c6da 100644 --- a/Rendering/Context2D/vtkContext2D.h +++ b/Rendering/Context2D/vtkContext2D.h @@ -209,12 +209,12 @@ public: * - VTK_MARKER_CIRCLE * - VTK_MARKER_DIAMOND * Marker size is determined by the current pen width. - * shape: the shape of the marker - * highlight: whether to highlight the marker or not - * points: where to draw the markers - * n: number of points - * colors: is an optional array of colors. - * nc_comps: is the number of components for the color. + * \param shape the shape of the marker + * \param highlight whether to highlight the marker or not + * \param points where to draw the markers + * \param n number of points + * \param colors is an optional array of colors. + * \param nc_comps is the number of components for the color. */ virtual void DrawMarkers( int shape, bool highlight, float* points, int n, unsigned char* colors, int nc_comps); -- GitLab From aaa7b4b5c65854279e6addccdb4a0123892ec914 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Mon, 16 May 2022 19:13:19 +0200 Subject: [PATCH 0190/1015] Revert changes to doxygen in vtkMultiThreshold --- Filters/General/vtkMultiThreshold.h | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/Filters/General/vtkMultiThreshold.h b/Filters/General/vtkMultiThreshold.h index 2f7826905367..77c2e57a1970 100644 --- a/Filters/General/vtkMultiThreshold.h +++ b/Filters/General/vtkMultiThreshold.h @@ -181,22 +181,22 @@ public: \f$\infty\f$ * or both endpoints set to \f$-\infty\f$ in order to locate cells with problematic values. - * xmin: The minimum attribute value - * xmax: The maximum attribute value - * omin: Whether the interval should be open or closed at \a xmin. Use + * @param xmin The minimum attribute value + * @param xmax The maximum attribute value + * @param omin Whether the interval should be open or closed at \a xmin. Use vtkMultiThreshold::OPEN or vtkMultiThreshold::CLOSED. - * omax: Whether the interval should be open or closed at \a xmax. Use + * @param omax Whether the interval should be open or closed at \a xmax. Use vtkMultiThreshold::OPEN or vtkMultiThreshold::CLOSED. - * assoc: One of vtkDataObject::FIELD_ASSOCIATION_CELLS or + * @param assoc One of vtkDataObject::FIELD_ASSOCIATION_CELLS or vtkDataObject::FIELD_ASSOCIATION_POINTS indicating whether * a point or cell array should be used. - * arrayName: The name of the array to use for thresholding - * attribType: The attribute to use for thresholding. + * @param arrayName The name of the array to use for thresholding + * @param attribType The attribute to use for thresholding. * One of vtkDataSetAttributes::SCALARS, VECTORS, TENSORS, NORMALS, TCOORDS, or GLOBALIDS. - * component: The number of the component to threshold on or one of the following enumerants + * @param component The number of the component to threshold on or one of the following enumerants for norms: * LINFINITY_NORM, L2_NORM, L1_NORM. - * allScalars: When \a center is vtkDataObject::FIELD_ASSOCIATION_POINTS, must all scalars + * @param allScalars When \a center is vtkDataObject::FIELD_ASSOCIATION_POINTS, must all scalars be in the interval for * the cell to be passed to the output, or just a single point's scalar? * @return An index used to identify the cells selected by the interval or -1 if the interval -- GitLab From faa48fbd16e638b2e4eac6a4be4315429339700b Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Mon, 16 May 2022 19:20:03 +0200 Subject: [PATCH 0191/1015] Add some doxygen warnings exclusion --- CMake/CTestCustom.cmake.in | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/CMake/CTestCustom.cmake.in b/CMake/CTestCustom.cmake.in index b73c31052d25..5438efba920e 100644 --- a/CMake/CTestCustom.cmake.in +++ b/CMake/CTestCustom.cmake.in @@ -112,6 +112,12 @@ list(APPEND CTEST_CUSTOM_WARNING_EXCEPTION # Ignore some tidy warnings from wrapper code. "vtk[^\\.]+(Java|Python).cxx:.*\\[(readability-redundant-string-init)\\]" + + # Ignore some doxygen warnings + "warning: Found ';' while parsing initializer list! \\(doxygen could be confused by a macro call without semicolon\\)" + "warning: documented symbol 'template class .*' was not declared or defined." + "warning: found tag without matching " + "warning: argument '.*' of command @param is not found in the argument list of" ) set(cdash_show_third_party_warnings "@VTK_ENABLE_CDASH_THIRD_PARTY_WARNINGS@") -- GitLab From c3bd177b3ca06d1ba54118b8fa44936dff8f7fce Mon Sep 17 00:00:00 2001 From: Michael Migliore Date: Mon, 16 May 2022 20:38:50 +0200 Subject: [PATCH 0192/1015] Fix static library component name --- CMake/vtkModule.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkModule.cmake b/CMake/vtkModule.cmake index f240ab9928f7..bc32a216a2df 100644 --- a/CMake/vtkModule.cmake +++ b/CMake/vtkModule.cmake @@ -4287,7 +4287,7 @@ function (_vtk_module_install target) ${ARGN} ARCHIVE DESTINATION "${_vtk_build_ARCHIVE_DESTINATION}" - COMPONENT "${_vtk_install_headers_component}" + COMPONENT "${_vtk_install_targets_component}" LIBRARY DESTINATION "${_vtk_build_LIBRARY_DESTINATION}" COMPONENT "${_vtk_install_targets_component}" -- GitLab From d62616c8f79e3e6e97a1fe1f5faa34f4756fb307 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Fri, 11 Mar 2022 14:26:48 -0500 Subject: [PATCH 0193/1015] vtkOpenXRUtilities: Remove constexpr This is c++14 feature. --- Rendering/OpenXR/vtkOpenXRUtilities.h | 13 ++++++------- 1 file changed, 6 insertions(+), 7 deletions(-) diff --git a/Rendering/OpenXR/vtkOpenXRUtilities.h b/Rendering/OpenXR/vtkOpenXRUtilities.h index ae806e9986b2..47dc65e725a7 100644 --- a/Rendering/OpenXR/vtkOpenXRUtilities.h +++ b/Rendering/OpenXR/vtkOpenXRUtilities.h @@ -63,14 +63,14 @@ public: /** * Return string representation of given XrActionType. */ - constexpr static const char* GetActionTypeAsString(const XrActionType& actionType); + static const char* GetActionTypeAsString(const XrActionType& actionType); //@} //@{ /** * Return string representation of given XrViewConfigurationType. */ - constexpr static const char* GetViewConfigurationTypeAsString( + static const char* GetViewConfigurationTypeAsString( const XrViewConfigurationType& viewConfigType); //@} @@ -78,7 +78,7 @@ public: /** * Return string representation of given XrStructureType. */ - constexpr static const char* GetStructureTypeAsString(const XrStructureType& structureType); + static const char* GetStructureTypeAsString(const XrStructureType& structureType); //@} constexpr static XrPosef IdentityPose = { @@ -223,7 +223,7 @@ inline void vtkOpenXRUtilities::SetMatrixFromXrPose(vtkMatrix4x4* result, const } //---------------------------------------------------------------------------- -constexpr const char* vtkOpenXRUtilities::GetActionTypeAsString(const XrActionType& actionType) +const char* vtkOpenXRUtilities::GetActionTypeAsString(const XrActionType& actionType) { switch (actionType) { @@ -243,7 +243,7 @@ constexpr const char* vtkOpenXRUtilities::GetActionTypeAsString(const XrActionTy } //---------------------------------------------------------------------------- -constexpr const char* vtkOpenXRUtilities::GetViewConfigurationTypeAsString( +const char* vtkOpenXRUtilities::GetViewConfigurationTypeAsString( const XrViewConfigurationType& viewConfigType) { switch (viewConfigType) @@ -262,8 +262,7 @@ constexpr const char* vtkOpenXRUtilities::GetViewConfigurationTypeAsString( } //---------------------------------------------------------------------------- -constexpr const char* vtkOpenXRUtilities::GetStructureTypeAsString( - const XrStructureType& structureType) +const char* vtkOpenXRUtilities::GetStructureTypeAsString(const XrStructureType& structureType) { switch (structureType) { -- GitLab From 976249ee6c4f3617083a49fa823a799a943e491c Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Fri, 11 Mar 2022 14:27:22 -0500 Subject: [PATCH 0194/1015] vtkOpenXRManager: Fix usage of strcmp --- Rendering/OpenXR/vtkOpenXRManager.cxx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Rendering/OpenXR/vtkOpenXRManager.cxx b/Rendering/OpenXR/vtkOpenXRManager.cxx index c33e052b264d..dac2f1e29ca1 100644 --- a/Rendering/OpenXR/vtkOpenXRManager.cxx +++ b/Rendering/OpenXR/vtkOpenXRManager.cxx @@ -605,7 +605,7 @@ std::vector vtkOpenXRManager::SelectExtensions() auto EnableExtensionIfSupported = [&](const char* extensionName) { for (uint32_t i = 0; i < extensionCount; i++) { - if (std::strcmp(extensionProperties[i].extensionName, extensionName) == 0) + if (strcmp(extensionProperties[i].extensionName, extensionName) == 0) { enabledExtensions.push_back(extensionName); return true; -- GitLab From 067978bf2aa094dfc8ca65cf0b0397b7182bae6d Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Fri, 11 Mar 2022 14:27:57 -0500 Subject: [PATCH 0195/1015] vtkOpenXRModel: Fix atomic instantiation --- Rendering/OpenXR/vtkOpenXRModel.h | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Rendering/OpenXR/vtkOpenXRModel.h b/Rendering/OpenXR/vtkOpenXRModel.h index f35734876b22..6622c15e8577 100644 --- a/Rendering/OpenXR/vtkOpenXRModel.h +++ b/Rendering/OpenXR/vtkOpenXRModel.h @@ -43,8 +43,8 @@ protected: void CreateTextureObject(vtkOpenGLRenderWindow* win) override; void LoadModelAndTexture(vtkOpenGLRenderWindow* win) override; - std::atomic ModelLoading = false; - std::atomic ModelLoaded = false; + std::atomic ModelLoading{ false }; + std::atomic ModelLoaded{ false }; void AsyncLoad(); std::vector ModelVBOData; -- GitLab From d6242537fcfba32366d0e8d0eb8bc2575104b21b Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Tue, 5 Apr 2022 10:35:21 -0600 Subject: [PATCH 0196/1015] RenderingOpenXR: Fixes to support build/run on Linux --- Rendering/OpenXR/vtkOpenXR.h | 8 +++++ Rendering/OpenXR/vtkOpenXRManager.cxx | 38 ++++++++++------------ Rendering/OpenXR/vtkOpenXRManager.h | 6 ---- Rendering/OpenXR/vtkOpenXRRenderWindow.cxx | 6 ++-- Rendering/OpenXR/vtkOpenXRUtilities.h | 22 +++++++++---- 5 files changed, 45 insertions(+), 35 deletions(-) diff --git a/Rendering/OpenXR/vtkOpenXR.h b/Rendering/OpenXR/vtkOpenXR.h index 41733bc0666b..83f7f8d487d1 100644 --- a/Rendering/OpenXR/vtkOpenXR.h +++ b/Rendering/OpenXR/vtkOpenXR.h @@ -5,6 +5,14 @@ #include "vtkRenderingOpenGLConfigure.h" #include "vtk_glew.h" +#if defined(VTK_USE_X) +// X11 defines globally some names that conflict with things in these classes +// X11/Xutil.h contains "#define AllValues 0x000F" +// X11/Xlib.h contains "#define Status int" +#include "vtkGenericDataArray.h" +#include +#endif + #ifdef _WIN32 #define XR_USE_PLATFORM_WIN32 #include "GL/gl.h" diff --git a/Rendering/OpenXR/vtkOpenXRManager.cxx b/Rendering/OpenXR/vtkOpenXRManager.cxx index dac2f1e29ca1..6d6f3181b80c 100644 --- a/Rendering/OpenXR/vtkOpenXRManager.cxx +++ b/Rendering/OpenXR/vtkOpenXRManager.cxx @@ -205,10 +205,6 @@ bool vtkOpenXRManager::WaitAndBeginFrame() return false; } - // This vector will contains the XrCompositionLayerProjection that need to be submitted in - // XrEndFrame through the frameEndInfo. We can submit multiple layers - this->LayersToSubmit.clear(); - // Store the value of shouldRender to avoid a render this->ShouldRenderCurrentFrame = frameState.shouldRender; @@ -362,11 +358,13 @@ void vtkOpenXRManager::ReleaseSwapchainImage(const uint32_t eye) //------------------------------------------------------------------------------ bool vtkOpenXRManager::EndFrame() { + // The projection layer consists of projection layer views. + XrCompositionLayerProjection layer{ XR_TYPE_COMPOSITION_LAYER_PROJECTION }; + std::vector layers; + // If the frame has been rendered, then we must submit the ProjectionLayerViews: if (this->ShouldRenderCurrentFrame) { - // The projection layer consists of projection layer views. - XrCompositionLayerProjection layer{ XR_TYPE_COMPOSITION_LAYER_PROJECTION }; // Inform the runtime that the app's submitted alpha channel has valid data for use during // composition. The primary display on HoloLens has an additive environment blend mode. It will // ignore the alpha channel. However, mixed reality capture uses the alpha channel if this bit @@ -378,7 +376,7 @@ bool vtkOpenXRManager::EndFrame() layer.views = this->RenderResources->ProjectionLayerViews.data(); // Add the layer to the submitted layers - this->LayersToSubmit.push_back(reinterpret_cast(&layer)); + layers.push_back(reinterpret_cast(&layer)); } // Reset should render state this->ShouldRenderCurrentFrame = false; @@ -388,8 +386,8 @@ bool vtkOpenXRManager::EndFrame() XrFrameEndInfo frameEndInfo{ XR_TYPE_FRAME_END_INFO }; frameEndInfo.displayTime = this->PredictedDisplayTime; frameEndInfo.environmentBlendMode = this->EnvironmentBlendMode; - frameEndInfo.layerCount = (uint32_t)this->LayersToSubmit.size(); - frameEndInfo.layers = this->LayersToSubmit.data(); + frameEndInfo.layerCount = (uint32_t)layers.size(); + frameEndInfo.layers = layers.data(); xrEndFrame(this->Session, &frameEndInfo); return true; @@ -803,8 +801,8 @@ bool vtkOpenXRManager::CheckGraphicsRequirements() XrGraphicsRequirementsOpenGLKHR openGLReqs = { XR_TYPE_GRAPHICS_REQUIREMENTS_OPENGL_KHR, // .type nullptr, // .next - { 0 }, // .minApiVersionSupported - { 0 } // .maxApiVersionSupported + 0, // .minApiVersionSupported + 0 // .maxApiVersionSupported }; // this function pointer was loaded with xrGetInstanceProcAddr (see XrExtensions.h) @@ -832,9 +830,9 @@ bool vtkOpenXRManager::CreateGraphicsBinding(vtkOpenGLRenderWindow* helperWindow nullptr, // .next nullptr, // .xDisplay. a valid X11 display 0, // .visualid. a valid X11 visual id - { 0 }, // .glxFBConfig. a valid X11 OpenGL GLX GLXFBConfig - { 0 }, // .glxDrawable. a valid X11 OpenGL GLX GLXDrawable - { 0 } // .glxContext. a valid X11 OpenGL GLX GLXContext + 0, // .glxFBConfig. a valid X11 OpenGL GLX GLXFBConfig + 0, // .glxDrawable. a valid X11 OpenGL GLX GLXDrawable + 0 // .glxContext. a valid X11 OpenGL GLX GLXContext }); this->GraphicsBinding = graphicsBindingGLX; @@ -879,7 +877,7 @@ bool vtkOpenXRManager::CreateSession() XrSessionCreateInfo sessionCreateInfo = { XR_TYPE_SESSION_CREATE_INFO, // .type this->GraphicsBinding.get(), // .next - { 0 }, // .createFlags + 0, // .createFlags this->SystemId // .systemId }; @@ -912,10 +910,10 @@ bool vtkOpenXRManager::CreateReferenceSpace() } XrReferenceSpaceCreateInfo refSpaceCreateInfo = { - XR_TYPE_REFERENCE_SPACE_CREATE_INFO, // .type - nullptr, // .next - this->ReferenceSpaceType, // .referenceSpaceType - vtkOpenXRUtilities::IdentityPose // .poseInReferenceSpace + XR_TYPE_REFERENCE_SPACE_CREATE_INFO, // .type + nullptr, // .next + this->ReferenceSpaceType, // .referenceSpaceType + vtkOpenXRUtilities::GetIdentityPose() // .poseInReferenceSpace }; this->XrCheckError( @@ -1230,7 +1228,7 @@ bool vtkOpenXRManager::CreateOneAction( { vtkOpenXRManager::ControllerIndex::Left, vtkOpenXRManager::ControllerIndex::Right }) { if (!this->CreateOneActionSpace(actionT.Action, this->SubactionPaths[hand], - vtkOpenXRUtilities::IdentityPose, actionT.PoseSpaces[hand])) + vtkOpenXRUtilities::GetIdentityPose(), actionT.PoseSpaces[hand])) { vtkErrorMacro(<< "Failed to create pose action space for " << (hand == vtkOpenXRManager::ControllerIndex::Left ? "left" : "right") diff --git a/Rendering/OpenXR/vtkOpenXRManager.h b/Rendering/OpenXR/vtkOpenXRManager.h index 47c1c48ec1e8..93af7f8b7fb8 100644 --- a/Rendering/OpenXR/vtkOpenXRManager.h +++ b/Rendering/OpenXR/vtkOpenXRManager.h @@ -570,12 +570,6 @@ protected: std::vector ActionSets; XrActionSet* ActiveActionSet = nullptr; - /** - * This vector contains the XrCompositionLayer that need to be - * submitted in XrEndFrame - */ - std::vector LayersToSubmit; - /** * Store the frame predicted dispay time in WaitAndBeginFrame * To get the action data at this time and to submit it in EndFrame diff --git a/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx b/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx index 3de85ada3dda..595f20f13951 100644 --- a/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx +++ b/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx @@ -29,9 +29,11 @@ https://github.com/ValveSoftware/openvr/blob/master/LICENSE #include "vtkVRCamera.h" // include what we need for the helper window -#ifdef _WIN32 +#if defined(_WIN32) #include "vtkWin32OpenGLRenderWindow.h" -#elif VTK_USE_X +#endif + +#if defined(VTK_USE_X) #include "vtkXOpenGLRenderWindow.h" #endif diff --git a/Rendering/OpenXR/vtkOpenXRUtilities.h b/Rendering/OpenXR/vtkOpenXRUtilities.h index 47dc65e725a7..2b296b8939d2 100644 --- a/Rendering/OpenXR/vtkOpenXRUtilities.h +++ b/Rendering/OpenXR/vtkOpenXRUtilities.h @@ -81,10 +81,7 @@ public: static const char* GetStructureTypeAsString(const XrStructureType& structureType); //@} - constexpr static XrPosef IdentityPose = { - { 0.0, 0.0, 0.0, 1.0 }, // .orientation - { 0.0, 0.0, 0.0 } // .position - }; + static const XrPosef& GetIdentityPose(); protected: vtkOpenXRUtilities() = default; @@ -95,6 +92,16 @@ private: void operator=(const vtkOpenXRUtilities&) = delete; }; +//---------------------------------------------------------------------------- +inline const XrPosef& vtkOpenXRUtilities::GetIdentityPose() +{ + static const XrPosef pose = { + { 0.0, 0.0, 0.0, 1.0 }, // .orientation + { 0.0, 0.0, 0.0 } // .position + }; + return pose; +} + //---------------------------------------------------------------------------- inline void vtkOpenXRUtilities::CreateProjectionFov( vtkMatrix4x4* result, const XrFovf fov, const float nearZ, const float farZ) @@ -223,7 +230,7 @@ inline void vtkOpenXRUtilities::SetMatrixFromXrPose(vtkMatrix4x4* result, const } //---------------------------------------------------------------------------- -const char* vtkOpenXRUtilities::GetActionTypeAsString(const XrActionType& actionType) +inline const char* vtkOpenXRUtilities::GetActionTypeAsString(const XrActionType& actionType) { switch (actionType) { @@ -243,7 +250,7 @@ const char* vtkOpenXRUtilities::GetActionTypeAsString(const XrActionType& action } //---------------------------------------------------------------------------- -const char* vtkOpenXRUtilities::GetViewConfigurationTypeAsString( +inline const char* vtkOpenXRUtilities::GetViewConfigurationTypeAsString( const XrViewConfigurationType& viewConfigType) { switch (viewConfigType) @@ -262,7 +269,8 @@ const char* vtkOpenXRUtilities::GetViewConfigurationTypeAsString( } //---------------------------------------------------------------------------- -const char* vtkOpenXRUtilities::GetStructureTypeAsString(const XrStructureType& structureType) +inline const char* vtkOpenXRUtilities::GetStructureTypeAsString( + const XrStructureType& structureType) { switch (structureType) { -- GitLab From b17bbdeeee4ff5ec2fe3196328a2cd433587a4bc Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Tue, 26 Apr 2022 18:32:08 -0600 Subject: [PATCH 0197/1015] OpenXR: Create graphics binding with non-null objects In ParaView, the passed-in helperWindow is not an instance of vtkXOpenGLRenderWindow, which is needed to provide access to the components needed for the XrGraphicsBindingOpenGLXlibKHR struct. In that situation, we create an instance and initialize it from the current context in order to get the bits we need. --- Rendering/OpenGL2/vtkXOpenGLRenderWindow.cxx | 5 ++++ Rendering/OpenGL2/vtkXOpenGLRenderWindow.h | 2 ++ Rendering/OpenXR/vtkOpenXRManager.cxx | 25 ++++++++++++++------ 3 files changed, 25 insertions(+), 7 deletions(-) diff --git a/Rendering/OpenGL2/vtkXOpenGLRenderWindow.cxx b/Rendering/OpenGL2/vtkXOpenGLRenderWindow.cxx index 03dcfdbffa8d..61b5be2867e0 100644 --- a/Rendering/OpenGL2/vtkXOpenGLRenderWindow.cxx +++ b/Rendering/OpenGL2/vtkXOpenGLRenderWindow.cxx @@ -1186,6 +1186,11 @@ void* vtkXOpenGLRenderWindow::GetGenericContext() return static_cast(gc); } +void* vtkXOpenGLRenderWindow::GetGenericFBConfig() +{ + return reinterpret_cast(&(this->Internal->FBConfig)); +} + vtkTypeBool vtkXOpenGLRenderWindow::GetEventPending() { XEvent report; diff --git a/Rendering/OpenGL2/vtkXOpenGLRenderWindow.h b/Rendering/OpenGL2/vtkXOpenGLRenderWindow.h index 133cc861f7f4..05ed646fe404 100644 --- a/Rendering/OpenGL2/vtkXOpenGLRenderWindow.h +++ b/Rendering/OpenGL2/vtkXOpenGLRenderWindow.h @@ -167,6 +167,8 @@ public: void* GetGenericContext() override; void* GetGenericDrawable() override { return reinterpret_cast(this->WindowId); } + void* GetGenericFBConfig(); + /** * Get the current size of the screen in pixels. * An HDTV for example would be 1920 x 1080 pixels. diff --git a/Rendering/OpenXR/vtkOpenXRManager.cxx b/Rendering/OpenXR/vtkOpenXRManager.cxx index 6d6f3181b80c..bc9b198eea7d 100644 --- a/Rendering/OpenXR/vtkOpenXRManager.cxx +++ b/Rendering/OpenXR/vtkOpenXRManager.cxx @@ -14,6 +14,7 @@ =========================================================================*/ #include "vtkOpenXRManager.h" +#include "vtkNew.h" #include "vtkObjectFactory.h" #include "vtkOpenGLRenderWindow.h" #include "vtkOpenXRUtilities.h" @@ -28,6 +29,7 @@ // Work-around to get forward declarations of C typedef of anonymous // structs working. We do not want to include XUtil.h in the header as // it populates the global namespace. +#include "GL/glx.h" #include struct vtkXVisualInfo : public XVisualInfo { @@ -836,14 +838,23 @@ bool vtkOpenXRManager::CreateGraphicsBinding(vtkOpenGLRenderWindow* helperWindow }); this->GraphicsBinding = graphicsBindingGLX; - graphicsBindingGLX->xDisplay = reinterpret_cast(helperWindow->GetGenericDisplayId()); - graphicsBindingGLX->glxDrawable = - reinterpret_cast(helperWindow->GetGenericDrawable()); - graphicsBindingGLX->glxContext = reinterpret_cast(helperWindow->GetGenericContext()); + vtkNew xoglRenWin; + vtkXOpenGLRenderWindow* glxHelperWindow = vtkXOpenGLRenderWindow::SafeDownCast(helperWindow); - auto glxHelperWindow = vtkXOpenGLRenderWindow::SafeDownCast(helperWindow); - vtkXVisualInfo* visualInfo = glxHelperWindow->GetDesiredVisualInfo(); - graphicsBindingGLX->visualid = visualInfo->visualid; + if (glxHelperWindow == nullptr) + { + xoglRenWin->InitializeFromCurrentContext(); + glxHelperWindow = xoglRenWin; + } + + vtkXVisualInfo* v = glxHelperWindow->GetDesiredVisualInfo(); + GLXFBConfig* fbConfig = reinterpret_cast(glxHelperWindow->GetGenericFBConfig()); + + graphicsBindingGLX->xDisplay = glxHelperWindow->GetDisplayId(); + graphicsBindingGLX->glxDrawable = glxHelperWindow->GetWindowId(); + graphicsBindingGLX->glxContext = glXGetCurrentContext(); + graphicsBindingGLX->visualid = v->visualid; + graphicsBindingGLX->glxFBConfig = *fbConfig; #elif _WIN32 auto graphicsBindingGLWin32 = -- GitLab From 920ff5f1a47a95ab363c2a05efd48dfc7c04565d Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Wed, 27 Apr 2022 14:33:41 -0600 Subject: [PATCH 0198/1015] Docs: changelog for openxr support on linux --- Documentation/release/dev/linux-openxr-support.md | 4 ++++ 1 file changed, 4 insertions(+) create mode 100644 Documentation/release/dev/linux-openxr-support.md diff --git a/Documentation/release/dev/linux-openxr-support.md b/Documentation/release/dev/linux-openxr-support.md new file mode 100644 index 000000000000..95a668062bf9 --- /dev/null +++ b/Documentation/release/dev/linux-openxr-support.md @@ -0,0 +1,4 @@ +## Support for OpenXR on Linux + +VTK now has basic support for OpenXR on Linux. Changes were tested using a recent version +of the open source XR runtime project [Monado](https://gitlab.freedesktop.org/monado/monado). -- GitLab From f7b999a76897bf39fa2d863a2db30a411df55bc0 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Tue, 17 May 2022 00:01:38 -0400 Subject: [PATCH 0199/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 0128992a5aaa..8923438f40d4 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220516) +set(VTK_BUILD_VERSION 20220517) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 4075089990744f6cc9ca769bb093432249f13d04 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Tue, 17 May 2022 14:45:54 +0200 Subject: [PATCH 0200/1015] Update ioss tag --- ThirdParty/ioss/update.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ThirdParty/ioss/update.sh b/ThirdParty/ioss/update.sh index 387e2d94bd94..9fecc1898daf 100755 --- a/ThirdParty/ioss/update.sh +++ b/ThirdParty/ioss/update.sh @@ -8,7 +8,7 @@ readonly name="ioss" readonly ownership="Seacas Upstream " readonly subtree="ThirdParty/$name/vtk$name" readonly repo="https://gitlab.kitware.com/third-party/seacas.git" -readonly tag="ioss/for/vtk-20220427-master-gef9593ca93" +readonly tag="ioss/for/vtk-20220517-master-gef9593ca93" readonly paths=" packages/seacas/libraries/ioss/src/CMakeLists.vtk.txt packages/seacas/libraries/ioss/cmake/SEACASIoss_config.h.in -- GitLab From 8494b7008296fd8a56e9ad1ecce0f71e10f5c9de Mon Sep 17 00:00:00 2001 From: Seacas Upstream Date: Mon, 16 May 2022 13:37:00 -0400 Subject: [PATCH 0201/1015] ioss 2022-05-16 (0298ac38) Code extracted from: https://gitlab.kitware.com/third-party/seacas.git at commit 0298ac38154c57f3213b9f5a43493682e87c8b62 (ioss/for/vtk-20220517-master-gef9593ca93). --- Ioss_Property.C | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/Ioss_Property.C b/Ioss_Property.C index 2ba8f09f17f3..d5e0953bd38f 100644 --- a/Ioss_Property.C +++ b/Ioss_Property.C @@ -183,7 +183,10 @@ Ioss::Property::~Property() Ioss::Property &Ioss::Property::operator=(Ioss::Property rhs) { - std::swap(*this, rhs); + std::swap(this->name_, rhs.name_); + std::swap(this->type_, rhs.type_); + std::swap(this->origin_, rhs.origin_); + std::swap(this->data_, rhs.data_); return *this; } -- GitLab From 87ce799ba0d75fa5deb0c00ebca4d25b614a3479 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?F=C3=A9lix=20Olart?= Date: Tue, 17 May 2022 15:35:19 +0200 Subject: [PATCH 0202/1015] Fixed segmentation fault no global controller set --- IO/Parallel/vtkPOpenFOAMReader.cxx | 2 ++ 1 file changed, 2 insertions(+) diff --git a/IO/Parallel/vtkPOpenFOAMReader.cxx b/IO/Parallel/vtkPOpenFOAMReader.cxx index bed8b02f0ba5..b60e48bd81c5 100644 --- a/IO/Parallel/vtkPOpenFOAMReader.cxx +++ b/IO/Parallel/vtkPOpenFOAMReader.cxx @@ -66,6 +66,7 @@ #include "vtkDataArraySelection.h" #include "vtkDirectory.h" #include "vtkDoubleArray.h" +#include "vtkDummyController.h" #include "vtkFieldData.h" #include "vtkInformation.h" #include "vtkInformationVector.h" @@ -350,6 +351,7 @@ vtkPOpenFOAMReader::vtkPOpenFOAMReader() this->SetController(vtkMultiProcessController::GetGlobalController()); if (this->Controller == nullptr) { + this->SetController(vtkDummyController::New()); this->NumProcesses = 1; this->ProcessId = 0; } -- GitLab From 57d38a3f0b091fb50f51be90e19d6e1ca35e802e Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Tue, 17 May 2022 18:00:56 +0200 Subject: [PATCH 0203/1015] Fixup in vtkInteractorEventRecorder --- Rendering/Core/vtkInteractorEventRecorder.cxx | 18 +++++++++++++----- 1 file changed, 13 insertions(+), 5 deletions(-) diff --git a/Rendering/Core/vtkInteractorEventRecorder.cxx b/Rendering/Core/vtkInteractorEventRecorder.cxx index dc28d9678b1e..c272b53123e9 100644 --- a/Rendering/Core/vtkInteractorEventRecorder.cxx +++ b/Rendering/Core/vtkInteractorEventRecorder.cxx @@ -349,28 +349,36 @@ void vtkInteractorEventRecorder::WriteEvent(const char* event, int pos[2], int m << keyCode << " " << repeatCount << " "; if (keySym) { - *this->OutputStream << keySym; + *this->OutputStream << keySym << " "; } else { - *this->OutputStream << "0"; + *this->OutputStream << "0 "; } unsigned int eventId = vtkCommand::GetEventIdFromString(event); if (eventId == vtkCommand::DropFilesEvent) { - *this->OutputStream << static_cast(vtkEventDataType::StringArray); + *this->OutputStream << static_cast(vtkEventDataType::StringArray) << " "; // This should go into its own method once more events are supported vtkStringArray* filesArr = static_cast(callData); + + // Sanity check + if (!filesArr) + { + *this->OutputStream << "0 "; + return; + } + vtkIdType dataNum = filesArr->GetNumberOfValues(); - *this->OutputStream << dataNum; + *this->OutputStream << dataNum << " "; if (dataNum > 0) { for (vtkIdType i = 0; i < dataNum; i++) { - *this->OutputStream << filesArr->GetValue(i); + *this->OutputStream << filesArr->GetValue(i) << " "; } } *this->OutputStream << "\n"; -- GitLab From 9db308ba8d1590fecb96611e810450b3fce3aeea Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 27 Apr 2022 12:20:59 -0400 Subject: [PATCH 0204/1015] FindCellStrategy: Implement InsideCellBounds approach --- Common/DataModel/vtkCellLocatorStrategy.cxx | 6 ++++++ Common/DataModel/vtkCellLocatorStrategy.h | 5 +++++ Common/DataModel/vtkClosestPointStrategy.cxx | 9 +++++++++ Common/DataModel/vtkClosestPointStrategy.h | 5 +++++ Common/DataModel/vtkFindCellStrategy.h | 5 +++++ 5 files changed, 30 insertions(+) diff --git a/Common/DataModel/vtkCellLocatorStrategy.cxx b/Common/DataModel/vtkCellLocatorStrategy.cxx index 2b9a3a3f6c31..b4003a49438b 100644 --- a/Common/DataModel/vtkCellLocatorStrategy.cxx +++ b/Common/DataModel/vtkCellLocatorStrategy.cxx @@ -141,6 +141,12 @@ vtkIdType vtkCellLocatorStrategy::FindClosestPointWithinRadius(double x[3], doub x, radius, closestPoint, cell, cellId, subId, dist2, inside); } +//------------------------------------------------------------------------------ +bool vtkCellLocatorStrategy::InsideCellBounds(double x[3], vtkIdType cellId) +{ + return this->CellLocator->InsideCellBounds(x, cellId); +} + //------------------------------------------------------------------------------ void vtkCellLocatorStrategy::PrintSelf(ostream& os, vtkIndent indent) { diff --git a/Common/DataModel/vtkCellLocatorStrategy.h b/Common/DataModel/vtkCellLocatorStrategy.h index b6b677202e9d..f2ed87630818 100644 --- a/Common/DataModel/vtkCellLocatorStrategy.h +++ b/Common/DataModel/vtkCellLocatorStrategy.h @@ -67,6 +67,11 @@ public: vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; + /** + * Implement the specific strategy. + */ + bool InsideCellBounds(double x[3], vtkIdType cellId) override; + ///@{ /** * Set / get an instance of vtkAbstractCellLocator which is used to diff --git a/Common/DataModel/vtkClosestPointStrategy.cxx b/Common/DataModel/vtkClosestPointStrategy.cxx index 7352707a4dfb..84730cec5957 100644 --- a/Common/DataModel/vtkClosestPointStrategy.cxx +++ b/Common/DataModel/vtkClosestPointStrategy.cxx @@ -367,6 +367,15 @@ vtkIdType vtkClosestPointStrategy::FindClosestPointWithinRadius(double x[3], dou return retVal; } +//------------------------------------------------------------------------------ +bool vtkClosestPointStrategy::InsideCellBounds(double x[3], vtkIdType cellId) +{ + double bounds[6]; + this->PointSet->GetCellBounds(cellId, bounds); + return bounds[0] <= x[0] && x[0] <= bounds[1] && bounds[2] <= x[1] && x[1] <= bounds[3] && + bounds[4] <= x[2] && x[2] <= bounds[5]; +} + //------------------------------------------------------------------------------ void vtkClosestPointStrategy::CopyParameters(vtkFindCellStrategy* from) { diff --git a/Common/DataModel/vtkClosestPointStrategy.h b/Common/DataModel/vtkClosestPointStrategy.h index 8aa26b2338e4..16f3099d5149 100644 --- a/Common/DataModel/vtkClosestPointStrategy.h +++ b/Common/DataModel/vtkClosestPointStrategy.h @@ -81,6 +81,11 @@ public: vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) override; + /** + * Implement the specific strategy. + */ + bool InsideCellBounds(double x[3], vtkIdType cellId) override; + ///@{ /** * Set / get an instance of vtkAbstractPointLocator which is used to diff --git a/Common/DataModel/vtkFindCellStrategy.h b/Common/DataModel/vtkFindCellStrategy.h index 4d7bc191a3c1..87044f36a856 100644 --- a/Common/DataModel/vtkFindCellStrategy.h +++ b/Common/DataModel/vtkFindCellStrategy.h @@ -105,6 +105,11 @@ public: virtual vtkIdType FindClosestPointWithinRadius(double x[3], double radius, double closestPoint[3], vtkGenericCell* cell, vtkIdType& cellId, int& subId, double& dist2, int& inside) = 0; + /** + * Quickly test if a point is inside the bounds of a particular cell. + */ + virtual bool InsideCellBounds(double x[3], vtkIdType cellId) = 0; + /** * Copy essential parameters between instances of this class. This * generally is used to copy from instance prototype to another, or to copy -- GitLab From 64c6db3f09caaa75a6f736462b776cd758b732f1 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 2 May 2022 07:49:38 -0400 Subject: [PATCH 0205/1015] FindCellStrategy: Allow usage of copied locator --- Common/DataModel/vtkCellLocatorStrategy.cxx | 18 ++++++++++++------ Common/DataModel/vtkCellLocatorStrategy.h | 9 ++++++++- Common/DataModel/vtkClosestPointStrategy.cxx | 12 ++---------- Common/DataModel/vtkClosestPointStrategy.h | 1 - Common/DataModel/vtkFindCellStrategy.cxx | 3 +++ Common/DataModel/vtkFindCellStrategy.h | 5 +++++ Common/DataModel/vtkPointSet.cxx | 1 - 7 files changed, 30 insertions(+), 19 deletions(-) diff --git a/Common/DataModel/vtkCellLocatorStrategy.cxx b/Common/DataModel/vtkCellLocatorStrategy.cxx index b4003a49438b..b1a2d079661b 100644 --- a/Common/DataModel/vtkCellLocatorStrategy.cxx +++ b/Common/DataModel/vtkCellLocatorStrategy.cxx @@ -26,11 +26,6 @@ vtkStandardNewMacro(vtkCellLocatorStrategy); //------------------------------------------------------------------------------ vtkCellLocatorStrategy::vtkCellLocatorStrategy() { - // You may ask why this OwnsLocator rigamarole. The reason is that the - // reference counting garbage collector gets confused when the locator, - // point set, and strategy are all mixed together; resulting in memory - // leaks etc. - this->OwnsLocator = false; this->CellLocator = nullptr; } @@ -88,7 +83,7 @@ int vtkCellLocatorStrategy::Initialize(vtkPointSet* ps) vtkAbstractCellLocator* psCL = ps->GetCellLocator(); if (psCL == nullptr) { - if (this->CellLocator != nullptr && this->OwnsLocator) + if (this->CellLocator != nullptr) { this->CellLocator->SetDataSet(ps); this->CellLocator->BuildLocator(); @@ -147,6 +142,17 @@ bool vtkCellLocatorStrategy::InsideCellBounds(double x[3], vtkIdType cellId) return this->CellLocator->InsideCellBounds(x, cellId); } +//------------------------------------------------------------------------------ +void vtkCellLocatorStrategy::CopyParameters(vtkFindCellStrategy* from) +{ + this->Superclass::CopyParameters(from); + + if (auto strategy = vtkCellLocatorStrategy::SafeDownCast(from)) + { + this->CellLocator = strategy->CellLocator; + } +} + //------------------------------------------------------------------------------ void vtkCellLocatorStrategy::PrintSelf(ostream& os, vtkIndent indent) { diff --git a/Common/DataModel/vtkCellLocatorStrategy.h b/Common/DataModel/vtkCellLocatorStrategy.h index f2ed87630818..d5733c29d81e 100644 --- a/Common/DataModel/vtkCellLocatorStrategy.h +++ b/Common/DataModel/vtkCellLocatorStrategy.h @@ -82,12 +82,19 @@ public: vtkGetObjectMacro(CellLocator, vtkAbstractCellLocator); ///@} + /** + * Copy essential parameters between instances of this class. This + * generally is used to copy from instance prototype to another, or to copy + * strategies between thread instances. Sub-classes can contribute to + * the parameter copying process via chaining. + */ + void CopyParameters(vtkFindCellStrategy* from) override; + protected: vtkCellLocatorStrategy(); ~vtkCellLocatorStrategy() override; vtkAbstractCellLocator* CellLocator; - bool OwnsLocator; // was the locator specified? or taken from associated point set private: vtkCellLocatorStrategy(const vtkCellLocatorStrategy&) = delete; diff --git a/Common/DataModel/vtkClosestPointStrategy.cxx b/Common/DataModel/vtkClosestPointStrategy.cxx index 84730cec5957..6dd17588f335 100644 --- a/Common/DataModel/vtkClosestPointStrategy.cxx +++ b/Common/DataModel/vtkClosestPointStrategy.cxx @@ -32,11 +32,6 @@ vtkClosestPointStrategy::vtkClosestPointStrategy() this->CellIds->Allocate(32); this->NearPointIds->Allocate(32); - // You may ask why this OwnsLocator rigamarole. The reason is that the - // reference counting garbage collector gets confused when the locator, - // point set, and strategy are all mixed together; resulting in memory - // leaks etc. - this->OwnsLocator = false; this->PointLocator = nullptr; } @@ -94,7 +89,7 @@ int vtkClosestPointStrategy::Initialize(vtkPointSet* ps) vtkAbstractPointLocator* psPL = ps->GetPointLocator(); if (psPL == nullptr) { - if (this->PointLocator != nullptr && this->OwnsLocator) + if (this->PointLocator != nullptr) { this->PointLocator->SetDataSet(ps); this->PointLocator->BuildLocator(); @@ -379,14 +374,11 @@ bool vtkClosestPointStrategy::InsideCellBounds(double x[3], vtkIdType cellId) //------------------------------------------------------------------------------ void vtkClosestPointStrategy::CopyParameters(vtkFindCellStrategy* from) { - this->Superclass::CopyParameters(from); - vtkClosestPointStrategy* strategy = vtkClosestPointStrategy::SafeDownCast(from); - if (strategy) + if (auto strategy = vtkClosestPointStrategy::SafeDownCast(from)) { this->PointLocator = strategy->PointLocator; - this->OwnsLocator = false; } } diff --git a/Common/DataModel/vtkClosestPointStrategy.h b/Common/DataModel/vtkClosestPointStrategy.h index 16f3099d5149..33e24d565a40 100644 --- a/Common/DataModel/vtkClosestPointStrategy.h +++ b/Common/DataModel/vtkClosestPointStrategy.h @@ -123,7 +123,6 @@ protected: std::vector Weights; vtkAbstractPointLocator* PointLocator; - bool OwnsLocator; // was the locator specified? or taken from associated point set private: vtkClosestPointStrategy(const vtkClosestPointStrategy&) = delete; diff --git a/Common/DataModel/vtkFindCellStrategy.cxx b/Common/DataModel/vtkFindCellStrategy.cxx index 3fd5f52cb868..42ab9d4d33b6 100644 --- a/Common/DataModel/vtkFindCellStrategy.cxx +++ b/Common/DataModel/vtkFindCellStrategy.cxx @@ -21,6 +21,7 @@ vtkFindCellStrategy::vtkFindCellStrategy() { this->PointSet = nullptr; + this->OwnsLocator = false; } //------------------------------------------------------------------------------ @@ -46,7 +47,9 @@ int vtkFindCellStrategy::Initialize(vtkPointSet* ps) //------------------------------------------------------------------------------ void vtkFindCellStrategy::CopyParameters(vtkFindCellStrategy* from) { + this->OwnsLocator = false; this->PointSet = from->PointSet; + std::copy_n(from->Bounds, 6, this->Bounds); } //------------------------------------------------------------------------------ diff --git a/Common/DataModel/vtkFindCellStrategy.h b/Common/DataModel/vtkFindCellStrategy.h index 87044f36a856..73849af684f7 100644 --- a/Common/DataModel/vtkFindCellStrategy.h +++ b/Common/DataModel/vtkFindCellStrategy.h @@ -122,6 +122,11 @@ protected: vtkFindCellStrategy(); ~vtkFindCellStrategy() override; + // You may ask why this OwnsLocator rigamarole. The reason is that the reference counting garbage + // collector gets confused when the (cell/point) locator, point set, and strategy are all mixed + // together; resulting in memory leaks etc, So this defines if the locator specified or taken from + // another strategy instance or the dataset. + bool OwnsLocator; vtkPointSet* PointSet; // vtkPointSet which this strategy is associated with double Bounds[6]; // bounding box of vtkPointSet diff --git a/Common/DataModel/vtkPointSet.cxx b/Common/DataModel/vtkPointSet.cxx index 7227106cdccf..777b9eb3a4c4 100644 --- a/Common/DataModel/vtkPointSet.cxx +++ b/Common/DataModel/vtkPointSet.cxx @@ -174,7 +174,6 @@ void vtkPointSet::BuildPointLocator() } else if (this->Points->GetMTime() > this->PointLocator->GetMTime()) { - cout << "Building supplied point locator\n"; this->PointLocator->SetDataSet(this); } -- GitLab From bb566de30dc423bc13059fe9a984a4ff9173ca51 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 2 May 2022 09:32:45 -0400 Subject: [PATCH 0206/1015] Deprecate vtkInterpolatedVelocityField/vtkCellLocatorInterpolatedVelocityField --- Common/Math/vtkFunctionSet.h | 2 +- ...estCellLocatorInterpolatedVelocityField.py | 8 ++-- .../FlowPaths/Testing/Python/TestFindCell.py | 2 +- .../vtkAbstractInterpolatedVelocityField.cxx | 28 +++++--------- .../vtkAbstractInterpolatedVelocityField.h | 37 +++++++++---------- ...tkCellLocatorInterpolatedVelocityField.cxx | 3 ++ .../vtkCellLocatorInterpolatedVelocityField.h | 23 ++++++++---- .../vtkCompositeInterpolatedVelocityField.cxx | 6 ++- .../vtkCompositeInterpolatedVelocityField.h | 17 +++++++-- .../vtkEvenlySpacedStreamlines2D.cxx | 31 +++++----------- .../FlowPaths/vtkEvenlySpacedStreamlines2D.h | 8 ++-- .../vtkInterpolatedVelocityField.cxx | 4 ++ .../FlowPaths/vtkInterpolatedVelocityField.h | 10 +++-- Filters/FlowPaths/vtkStreamTracer.cxx | 37 ++++++++----------- Filters/FlowPaths/vtkStreamTracer.h | 12 +++--- Filters/FlowPaths/vtkVectorFieldTopology.h | 3 +- Filters/Generic/vtkGenericStreamTracer.cxx | 2 +- .../Testing/Cxx/TestPStreamAMR.cxx | 1 - 18 files changed, 121 insertions(+), 113 deletions(-) diff --git a/Common/Math/vtkFunctionSet.h b/Common/Math/vtkFunctionSet.h index aaf4e47a419e..7a7f5f371c43 100644 --- a/Common/Math/vtkFunctionSet.h +++ b/Common/Math/vtkFunctionSet.h @@ -22,7 +22,7 @@ * The only supported operation is the function evaluation at x_j. * * @sa - * vtkImplicitDataSet vtkInterpolatedVelocityField + * vtkImplicitDataSet vtkCompositeInterpolatedVelocityField vtkAMRInterpolatedVelocityField * vtkInitialValueProblemSolver */ diff --git a/Filters/FlowPaths/Testing/Python/TestCellLocatorInterpolatedVelocityField.py b/Filters/FlowPaths/Testing/Python/TestCellLocatorInterpolatedVelocityField.py index 3b61c5ca2b90..0d06e2f0c699 100755 --- a/Filters/FlowPaths/Testing/Python/TestCellLocatorInterpolatedVelocityField.py +++ b/Filters/FlowPaths/Testing/Python/TestCellLocatorInterpolatedVelocityField.py @@ -37,7 +37,8 @@ psActor.GetProperty().SetRepresentationToWireframe() # Use the vtkModifiedBSPTree rk4 = vtk.vtkRungeKutta4() bspLoc = vtk.vtkModifiedBSPTree() -ivp = vtk.vtkCellLocatorInterpolatedVelocityField() +ivp = vtk.vtkCompositeInterpolatedVelocityField() +ivp.SetFindCellStrategy(vtk.vtkCellLocatorStrategy()) ivp.GetFindCellStrategy().SetCellLocator(bspLoc) streamer = vtk.vtkStreamTracer() streamer.SetInputData(output) @@ -70,8 +71,9 @@ outlineActor.SetMapper(outlineMapper) # Use a vtkStaticCellLocator staticLoc = vtk.vtkStaticCellLocator() -ivp2 = vtk.vtkCellLocatorInterpolatedVelocityField() -ivp.GetFindCellStrategy().SetCellLocator(staticLoc) +ivp2 = vtk.vtkCompositeInterpolatedVelocityField() +ivp2.SetFindCellStrategy(vtk.vtkCellLocatorStrategy()) +ivp2.GetFindCellStrategy().SetCellLocator(staticLoc) streamer2 = vtk.vtkStreamTracer() streamer2.SetInputData(output) streamer2.SetSourceData(ps.GetOutput()) diff --git a/Filters/FlowPaths/Testing/Python/TestFindCell.py b/Filters/FlowPaths/Testing/Python/TestFindCell.py index cb1c027cb63c..2d0ef81b2623 100755 --- a/Filters/FlowPaths/Testing/Python/TestFindCell.py +++ b/Filters/FlowPaths/Testing/Python/TestFindCell.py @@ -68,7 +68,7 @@ line.Update() rk4 = vtk.vtkRungeKutta4() strategy = vtk.vtkClosestNPointsStrategy() -ivp = vtk.vtkInterpolatedVelocityField() +ivp = vtk.vtkCompositeInterpolatedVelocityField() ivp.SetFindCellStrategy(strategy) streamer = vtk.vtkStreamTracer() diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx index 878a1b8efa11..2e3dacc0b72c 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx @@ -57,7 +57,7 @@ vtkAbstractInterpolatedVelocityField::vtkAbstractInterpolatedVelocityField() this->LastClosestPoint[1] = 0.0; this->LastClosestPoint[2] = 0.0; - this->VectorsType = 0; + this->VectorsType = vtkDataObject::POINT; this->VectorsSelection = nullptr; this->NormalizeVector = false; this->ForceSurfaceTangentVector = false; @@ -140,24 +140,22 @@ void vtkAbstractInterpolatedVelocityField::Initialize(vtkCompositeDataSet* compD } strategyClone = nullptr; - if (auto pointSet = vtkPointSet::SafeDownCast(dataset)) + if (vtkPointSet::SafeDownCast(dataset)) { strategyClone = strategy->NewInstance(); } - - this->FunctionCacheMap.insert( - std::make_pair(dataset, vtkFunctionCache(strategyClone, vectors))); + this->AddToFunctionCache(dataset, strategyClone, vectors); } // for all datasets of composite dataset // Now initialize the new strategies - for (auto& dataset : datasets) + for (auto& functionCache : this->FunctionCacheMap) { + auto& dataset = functionCache.first; + auto& strategyLocal = functionCache.second.Strategy; if (auto pointSet = vtkPointSet::SafeDownCast(dataset)) { - auto datasetFunctionCacheIter = this->FunctionCacheMap.find(dataset); - strategyClone = datasetFunctionCacheIter->second.Strategy; - strategyClone->CopyParameters(strategy); - strategyClone->Initialize(pointSet); + strategyLocal->CopyParameters(strategy); + strategyLocal->Initialize(pointSet); } } @@ -429,12 +427,7 @@ int vtkAbstractInterpolatedVelocityField::GetLastWeights(double* w) { return 0; } - - int numPts = this->CurrentCell->GetNumberOfPoints(); - for (int i = 0; i < numPts; i++) - { - w[i] = this->Weights[i]; - } + std::copy_n(this->Weights.data(), this->CurrentCell->GetNumberOfPoints(), w); return 1; } @@ -512,8 +505,7 @@ void vtkAbstractInterpolatedVelocityField::CopyParameters( strategy->Initialize(vtkPointSet::SafeDownCast(cacheMap.first)); } vtkDataArray* vectors = cacheMap.second.Vectors; - this->FunctionCacheMap.insert( - std::make_pair(cacheMap.first, vtkFunctionCache(strategy, vectors))); + this->AddToFunctionCache(cacheMap.first, strategy, vectors); } } diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h index 7ac3e5e08e95..626508402a4b 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h @@ -34,7 +34,8 @@ * information). Writing a threaded operations requires separate instances of * vtkAbstractInterpolatedVelocityField for each thread. * - * For vtkInterpolatedVelocityField, level #0 begins with intra-cell caching. + * For vtkCompositeInterpolatedVelocityField with CLOSEST_POINT strategy, + * level #0 begins with intra-cell caching. * Specifically if the previous cell is valid and the next point is still in * it ( i.e., vtkCell::EvaluatePosition() returns 1, coupled with newly created * parametric coordinates & weights ), the function values can be interpolated @@ -54,11 +55,7 @@ * or vtkCellLocator via vtkCellLocatorStrategy) improves robustness at some * cost to performance. Originally, these different behaviors (i.e., using * different locators) was codified into different subclasses of - * vtkAbstractInterpolatedVelocityField. For example, vtkInterpolatedVelocityField - * used a point locator, while vtkCellLocatorInterpolatedVelocityField used a - * cell locator. With the recent introduction of vtkFindCellStrategy, this - * approach is obsoleted (i.e., different subclasses are not reall necessary) - * but retained for backwards compatibility reasons. + * vtkAbstractInterpolatedVelocityField. * * Note that topologically structured classes such as vtkImageData and * vtkRectilinearGrid are able to provide fast robust cell location. Hence @@ -71,7 +68,7 @@ * should be created by each thread. * * @sa - * vtkInterpolatedVelocityField vtkCellLocatorInterpolatedVelocityField + * vtkCompositeInterpolatedVelocityField vtkAMRInterpolatedVelocityField * vtkGenericInterpolatedVelocityField vtkCachingInterpolatedVelocityField * vtkTemporalInterpolatedVelocityField vtkFunctionSet vtkStreamTracer * vtkFindCellStrategy @@ -82,11 +79,15 @@ #include "vtkFiltersFlowPathsModule.h" // For export macro #include "vtkFunctionSet.h" -#include "vtkNew.h" // for vtkNew +#include "vtkNew.h" // for vtkNew +#include "vtkSmartPointer.h" // for vtkSmartPointer #include // for cache #include // for weights +class vtkCellLocatorStrategy; +class vtkClosestPointStrategy; +class vtkClosestNPointsStrategy; class vtkCompositeDataSet; class vtkDataObject; class vtkDataSet; @@ -140,10 +141,9 @@ public: ///@{ /** * Set/Get the caching flag. If this flag is turned ON, there are two levels - * of caching for derived concrete class vtkInterpolatedVelocityField and one - * level of caching for derived concrete class vtkCellLocatorInterpolatedVelocityField. - * Otherwise a global cell location is always invoked for evaluating the - * function values at any point. + * of caching for when the strategy is CLOSEST_POINT and one level of caching + * when the strategy is CELL_LOCATOR. Otherwise a global cell location is always + * invoked for evaluating the function values at any point. */ vtkSetMacro(Caching, bool); vtkGetMacro(Caching, bool); @@ -333,10 +333,10 @@ protected: * Evaluate the velocity field f at point (x, y, z) in a specified dataset * by invoking vtkDataSet::FindCell() to locate the next cell if the given * point is outside the current cell. To address vtkPointSet, vtkPointLocator - * is involved via vtkPointSet::FindCell() in vtkInterpolatedVelocityField - * for cell location. In vtkCellLocatorInterpolatedVelocityField, this function - * is invoked just to handle vtkImageData and vtkRectilinearGrid that are not - * assigned with any vtkAbstractCellLocatot-type cell locator. + * is involved via vtkPointSet::FindCell() using CLOSEST_POINT strategy + * for cell location. In vtkCompositeInterpolatedVelocityField with a CELL_LOCATOR strategy, + * this function is invoked just to handle vtkImageData and vtkRectilinearGrid that are not + * assigned with any vtkAbstractCellLocator-type cell locator. * If activated, returned vector will be tangential to the first * three point of the cell */ @@ -345,9 +345,8 @@ protected: /** * Try to find the cell closest to provided x point in provided dataset, * By first testing inclusion in it's cached cell and neighbor - * Then testing globally - * Then , only if surfacic is activated finding the closest cell - * using FindPoint and comparing distance with tolerance + * Then testing globally. Then, only if surface is activated finding the + * closest cell using FindClosestPointWithinRadius */ virtual bool FindAndUpdateCell(vtkDataSet* ds, vtkFindCellStrategy* strategy, double* x); diff --git a/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.cxx index 88cd278b9c07..cf92996a97f6 100644 --- a/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.cxx @@ -12,6 +12,9 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +// VTK_DEPRECATED_IN_9_2_0() warnings for this class. +#define VTK_DEPRECATION_LEVEL 0 + #include "vtkCellLocatorInterpolatedVelocityField.h" #include "vtkCellLocatorStrategy.h" diff --git a/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.h index 5cebadf795c5..437c66555432 100644 --- a/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCellLocatorInterpolatedVelocityField.h @@ -52,23 +52,30 @@ #define vtkCellLocatorInterpolatedVelocityField_h #include "vtkCompositeInterpolatedVelocityField.h" +#include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 #include "vtkFiltersFlowPathsModule.h" // For export macro class vtkAbstractCellLocator; -class VTKFILTERSFLOWPATHS_EXPORT vtkCellLocatorInterpolatedVelocityField - : public vtkCompositeInterpolatedVelocityField +class VTK_DEPRECATED_IN_9_2_0( + "Use vtkCompositeInterpolatedVelocityField instead of vtkCellLocatorInterpolatedVelocityField " + "and set the desired strategy.") VTKFILTERSFLOWPATHS_EXPORT + vtkCellLocatorInterpolatedVelocityField : public vtkCompositeInterpolatedVelocityField { public: - vtkTypeMacro(vtkCellLocatorInterpolatedVelocityField, vtkCompositeInterpolatedVelocityField); - void PrintSelf(ostream& os, vtkIndent indent) override; - /** - * Construct a vtkCellLocatorInterpolatedVelocityField without an initial - * dataset. Caching is set on and LastCellId is set to -1. + * Construct a vtkCompositeInterpolatedVelocityField subclass. */ static vtkCellLocatorInterpolatedVelocityField* New(); + ///@{ + /** + * Standard methods for type information and printing. + */ + vtkTypeMacro(vtkCellLocatorInterpolatedVelocityField, vtkCompositeInterpolatedVelocityField); + void PrintSelf(ostream& os, vtkIndent indent) override; + ///@} + protected: vtkCellLocatorInterpolatedVelocityField(); ~vtkCellLocatorInterpolatedVelocityField() override; @@ -79,3 +86,5 @@ private: }; #endif + +// VTK-HeaderTest-Exclude: vtkCellLocatorInterpolatedVelocityField.h diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx index 889413d2048d..44404e325110 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx @@ -14,16 +14,20 @@ =========================================================================*/ #include "vtkCompositeInterpolatedVelocityField.h" -#include "vtkDataArray.h" +#include "vtkClosestPointStrategy.h" #include "vtkDataSet.h" #include "vtkGenericCell.h" #include "vtkMath.h" #include "vtkObjectFactory.h" #include "vtkPointData.h" +//------------------------------------------------------------------------------ +vtkStandardNewMacro(vtkCompositeInterpolatedVelocityField); + //------------------------------------------------------------------------------ vtkCompositeInterpolatedVelocityField::vtkCompositeInterpolatedVelocityField() { + this->SetFindCellStrategy(vtkSmartPointer::New()); this->LastDataSetIndex = 0; } diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h index d2775ab1f3d1..bd1e289b2702 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h @@ -19,14 +19,15 @@ * * vtkCompositeInterpolatedVelocityField acts as a continuous velocity field * by performing cell interpolation on one or more underlying vtkDataSets. That is, - * composite datasets are combined to create a continuous velocity field. + * composite datasets are combined to create a continuous velocity field. The default + * strategy is to use the closest point strategy. * * @warning * vtkCompositeInterpolatedVelocityField is not thread safe. A new instance * should be created by each thread. * * @sa - * vtkInterpolatedVelocityField vtkCellLocatorInterpolatedVelocityField + * vtkAbstractInterpolatedVelocityField vtkAMRInterpolatedVelocityField * vtkGenericInterpolatedVelocityField vtkCachingInterpolatedVelocityField * vtkTemporalInterpolatedVelocityField vtkFunctionSet vtkStreamTracer */ @@ -43,15 +44,25 @@ class vtkDataSet; class vtkDataArray; class vtkPointData; class vtkGenericCell; -class vtkCompositeInterpolatedVelocityFieldDataSetsType; class VTKFILTERSFLOWPATHS_EXPORT vtkCompositeInterpolatedVelocityField : public vtkAbstractInterpolatedVelocityField { public: + ///@{ + /** + * Standard methods for type information and printing. + */ vtkTypeMacro(vtkCompositeInterpolatedVelocityField, vtkAbstractInterpolatedVelocityField); void PrintSelf(ostream& os, vtkIndent indent) override; + ///@} + /** + * Construct a vtkCompositeInterpolatedVelocityField class. + */ + static vtkCompositeInterpolatedVelocityField* New(); + + ///@{ /** * Add a dataset for implicit velocity function evaluation. If more than * one dataset is added, the evaluation point is searched in all until a diff --git a/Filters/FlowPaths/vtkEvenlySpacedStreamlines2D.cxx b/Filters/FlowPaths/vtkEvenlySpacedStreamlines2D.cxx index 75f5bd69779c..5835b363bb05 100644 --- a/Filters/FlowPaths/vtkEvenlySpacedStreamlines2D.cxx +++ b/Filters/FlowPaths/vtkEvenlySpacedStreamlines2D.cxx @@ -17,23 +17,20 @@ PURPOSE. See the above copyright notice for more information. #include "vtkAMRInterpolatedVelocityField.h" #include "vtkAbstractInterpolatedVelocityField.h" #include "vtkAppendPolyData.h" -#include "vtkCellArray.h" #include "vtkCellData.h" -#include "vtkCellLocatorInterpolatedVelocityField.h" #include "vtkCellLocatorStrategy.h" +#include "vtkClosestPointStrategy.h" #include "vtkCompositeDataIterator.h" #include "vtkCompositeDataPipeline.h" #include "vtkCompositeDataSet.h" +#include "vtkCompositeInterpolatedVelocityField.h" #include "vtkDataSetAttributes.h" #include "vtkDoubleArray.h" -#include "vtkExecutive.h" #include "vtkGenericCell.h" -#include "vtkIdList.h" #include "vtkImageData.h" #include "vtkInformation.h" #include "vtkInformationVector.h" #include "vtkIntArray.h" -#include "vtkInterpolatedVelocityField.h" #include "vtkMath.h" #include "vtkMathUtilities.h" #include "vtkModifiedBSPTree.h" @@ -48,14 +45,12 @@ PURPOSE. See the above copyright notice for more information. #include "vtkPolyLine.h" #include "vtkRungeKutta2.h" #include "vtkRungeKutta4.h" -#include "vtkRungeKutta45.h" #include "vtkSmartPointer.h" #include "vtkStreamTracer.h" #include #include #include -#include #include vtkObjectFactoryNewMacro(vtkEvenlySpacedStreamlines2D); @@ -504,29 +499,23 @@ void vtkEvenlySpacedStreamlines2D::SetInterpolatorTypeToCellLocator() //------------------------------------------------------------------------------ void vtkEvenlySpacedStreamlines2D::SetInterpolatorType(int interpType) { + vtkNew cIVF; if (interpType == vtkStreamTracer::INTERPOLATOR_WITH_CELL_LOCATOR) { // create an interpolator equipped with a cell locator - vtkSmartPointer cellLoc = - vtkSmartPointer::New(); - - // create the locator (FindCell()) strategy - vtkSmartPointer strategy = - vtkSmartPointer::New(); - + vtkNew strategy; // specify the type of the cell locator attached to the interpolator - vtkSmartPointer cellLocType = vtkSmartPointer::New(); + vtkNew cellLocType; strategy->SetCellLocator(cellLocType); - - this->SetInterpolatorPrototype(cellLoc); + cIVF->SetFindCellStrategy(strategy); } else { // create an interpolator equipped with a point locator (by default) - vtkSmartPointer pntLoc = - vtkSmartPointer::New(); - this->SetInterpolatorPrototype(pntLoc); + vtkNew strategy; + cIVF->SetFindCellStrategy(strategy); } + this->SetInterpolatorPrototype(cIVF); } //------------------------------------------------------------------------------ @@ -659,7 +648,7 @@ int vtkEvenlySpacedStreamlines2D::CheckInputs( } else { - func = vtkInterpolatedVelocityField::New(); + func = vtkCompositeInterpolatedVelocityField::New(); } } else diff --git a/Filters/FlowPaths/vtkEvenlySpacedStreamlines2D.h b/Filters/FlowPaths/vtkEvenlySpacedStreamlines2D.h index b4f072ac2f0a..5a9d42f3c605 100644 --- a/Filters/FlowPaths/vtkEvenlySpacedStreamlines2D.h +++ b/Filters/FlowPaths/vtkEvenlySpacedStreamlines2D.h @@ -82,9 +82,8 @@ * vtkStreamTracer vtkRibbonFilter vtkRuledSurfaceFilter vtkInitialValueProblemSolver * vtkRungeKutta2 vtkRungeKutta4 vtkRungeKutta45 vtkParticleTracerBase * vtkParticleTracer vtkParticlePathFilter vtkStreaklineFilter - * vtkAbstractInterpolatedVelocityField vtkInterpolatedVelocityField - * vtkCellLocatorInterpolatedVelocityField - * + * vtkAbstractInterpolatedVelocityField vtkCompositeInterpolatedVelocityField + * vtkAMRInterpolatedVelocityField */ #ifndef vtkEvenlySpacedStreamlines2D_h @@ -267,8 +266,7 @@ public: /** * Set the type of the velocity field interpolator to determine whether - * vtkInterpolatedVelocityField (INTERPOLATOR_WITH_DATASET_POINT_LOCATOR) or - * vtkCellLocatorInterpolatedVelocityField (INTERPOLATOR_WITH_CELL_LOCATOR) + * INTERPOLATOR_WITH_DATASET_POINT_LOCATOR or INTERPOLATOR_WITH_CELL_LOCATOR * is employed for locating cells during streamline integration. The latter * (adopting vtkAbstractCellLocator sub-classes such as vtkCellLocator and * vtkModifiedBSPTree) is more robust then the former (through vtkDataSet / diff --git a/Filters/FlowPaths/vtkInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkInterpolatedVelocityField.cxx index 45d1f2df026b..b7e91aff9c4a 100644 --- a/Filters/FlowPaths/vtkInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkInterpolatedVelocityField.cxx @@ -12,7 +12,11 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +// VTK_DEPRECATED_IN_9_2_0() warnings for this class. +#define VTK_DEPRECATION_LEVEL 0 + #include "vtkInterpolatedVelocityField.h" + #include "vtkClosestPointStrategy.h" #include "vtkObjectFactory.h" diff --git a/Filters/FlowPaths/vtkInterpolatedVelocityField.h b/Filters/FlowPaths/vtkInterpolatedVelocityField.h index 77e78f1ebde6..949ca52ba1c1 100644 --- a/Filters/FlowPaths/vtkInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkInterpolatedVelocityField.h @@ -59,15 +59,17 @@ #define vtkInterpolatedVelocityField_h #include "vtkCompositeInterpolatedVelocityField.h" +#include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 #include "vtkFiltersFlowPathsModule.h" // For export macro -class VTKFILTERSFLOWPATHS_EXPORT vtkInterpolatedVelocityField +class VTK_DEPRECATED_IN_9_2_0( + "Use vtkCompositeInterpolatedVelocityField instead of vtkCellLocatorInterpolatedVelocityField " + "and set the desired strategy.") VTKFILTERSFLOWPATHS_EXPORT vtkInterpolatedVelocityField : public vtkCompositeInterpolatedVelocityField { public: /** - * Construct a vtkInterpolatedVelocityField without an initial dataset. - * Caching is set on and LastCellId is set to -1. + * Construct a vtkCompositeInterpolatedVelocityField subclass. */ static vtkInterpolatedVelocityField* New(); @@ -89,3 +91,5 @@ private: }; #endif + +// VTK-HeaderTest-Exclude: vtkInterpolatedVelocityField.h diff --git a/Filters/FlowPaths/vtkStreamTracer.cxx b/Filters/FlowPaths/vtkStreamTracer.cxx index 131c03f4b0f4..870b1f1f7f87 100644 --- a/Filters/FlowPaths/vtkStreamTracer.cxx +++ b/Filters/FlowPaths/vtkStreamTracer.cxx @@ -18,10 +18,12 @@ PURPOSE. See the above copyright notice for more information. #include "vtkAbstractInterpolatedVelocityField.h" #include "vtkCellArray.h" #include "vtkCellData.h" -#include "vtkCellLocatorInterpolatedVelocityField.h" +#include "vtkCellLocatorStrategy.h" +#include "vtkClosestPointStrategy.h" #include "vtkCompositeDataIterator.h" #include "vtkCompositeDataPipeline.h" #include "vtkCompositeDataSet.h" +#include "vtkCompositeInterpolatedVelocityField.h" #include "vtkDataSetAttributes.h" #include "vtkDoubleArray.h" #include "vtkExecutive.h" @@ -30,7 +32,6 @@ PURPOSE. See the above copyright notice for more information. #include "vtkInformation.h" #include "vtkInformationVector.h" #include "vtkIntArray.h" -#include "vtkInterpolatedVelocityField.h" #include "vtkMath.h" #include "vtkMultiBlockDataSet.h" #include "vtkNew.h" @@ -45,7 +46,6 @@ PURPOSE. See the above copyright notice for more information. #include "vtkRungeKutta45.h" #include "vtkSMPTools.h" #include "vtkSmartPointer.h" -#include "vtkStaticCellLocator.h" #include @@ -167,18 +167,20 @@ void vtkStreamTracer::SetInterpolatorTypeToCellLocator() //------------------------------------------------------------------------------ void vtkStreamTracer::SetInterpolatorType(int interpType) { + vtkNew cIVF; if (interpType == INTERPOLATOR_WITH_CELL_LOCATOR) { // create an interpolator equipped with a cell locator - vtkNew cellLoc; - this->SetInterpolatorPrototype(cellLoc); + vtkNew strategy; + cIVF->SetFindCellStrategy(strategy); } else { // create an interpolator equipped with a point locator (by default) - vtkNew pntLoc; - this->SetInterpolatorPrototype(pntLoc); + vtkNew strategy; + cIVF->SetFindCellStrategy(strategy); } + this->SetInterpolatorPrototype(cIVF); } //------------------------------------------------------------------------------ @@ -586,7 +588,7 @@ int vtkStreamTracer::CheckInputs(vtkAbstractInterpolatedVelocityField*& func, in } else { - func = vtkInterpolatedVelocityField::New(); + func = vtkCompositeInterpolatedVelocityField::New(); } } else @@ -926,6 +928,7 @@ struct TracerIntegrator localOutput.VelocityVectors->SetName(this->VecName); localOutput.VelocityVectors->SetNumberOfComponents(3); } + this->LocalThreadOutput.Local().Weights.resize(this->MaxCellSize); // Note: We have to use a specific value (safe to employ the maximum number // of steps) as the size of the initial memory allocation here. The @@ -959,7 +962,6 @@ struct TracerIntegrator double& lastUsedStepSize = localOutput.LastUsedStepSize; // Initialize in preparation for stream tracer production - int maxCellSize = this->MaxCellSize; vtkDataArray* seedSource = this->SeedSource; vtkIdList* seedIds = this->SeedIds; vtkIntArray* integrationDirections = this->IntegrationDirections; @@ -977,13 +979,6 @@ struct TracerIntegrator vtkDataArray* inVectors; int direction = 1; - double* weightsPtr = nullptr; - if (maxCellSize > 0) - { - weights.resize(maxCellSize); - weightsPtr = weights.data(); - } - // Associate the interpolation function with the integrator integrator->SetFunctionSet(func); @@ -1085,9 +1080,9 @@ struct TracerIntegrator } // Interpolate all point attributes on first point - func->GetLastWeights(weightsPtr); - InterpolatePoint( - outputPD, inputPD, nextPoint, cell->PointIds, weightsPtr, this->HasMatchingPointAttributes); + func->GetLastWeights(weights.data()); + InterpolatePoint(outputPD, inputPD, nextPoint, cell->PointIds, weights.data(), + this->HasMatchingPointAttributes); // handle both point and cell velocity attributes. vtkDataArray* outputVelocityVectors = outputPD->GetArray(vecName); if (vecType != vtkDataObject::POINT) @@ -1263,8 +1258,8 @@ struct TracerIntegrator time->InsertNextValue(integrationTime); // Interpolate all point attributes on current point - func->GetLastWeights(weightsPtr); - InterpolatePoint(outputPD, inputPD, nextPoint, cell->PointIds, weightsPtr, + func->GetLastWeights(weights.data()); + InterpolatePoint(outputPD, inputPD, nextPoint, cell->PointIds, weights.data(), this->HasMatchingPointAttributes); if (vecType != vtkDataObject::POINT) diff --git a/Filters/FlowPaths/vtkStreamTracer.h b/Filters/FlowPaths/vtkStreamTracer.h index 0b21340461dd..3e11dd5532f2 100644 --- a/Filters/FlowPaths/vtkStreamTracer.h +++ b/Filters/FlowPaths/vtkStreamTracer.h @@ -84,10 +84,8 @@ * vtkRibbonFilter vtkRuledSurfaceFilter vtkInitialValueProblemSolver * vtkRungeKutta2 vtkRungeKutta4 vtkRungeKutta45 vtkParticleTracerBase * vtkParticleTracer vtkParticlePathFilter vtkStreaklineFilter - * vtkAbstractInterpolatedVelocityField vtkInterpolatedVelocityField - * vtkCellLocatorInterpolatedVelocityField vtkSMPTools - * vtkPStreamTracer - * + * vtkAbstractInterpolatedVelocityField vtkCompositeInterpolatedVelocityField + * vtkAMRInterpolatedVelocityField vtkSMPTools vtkPStreamTracer */ #ifndef vtkStreamTracer_h @@ -399,13 +397,15 @@ public: * of the same class as this prototype. The performance of streamline * generations can be significantly affected by the choice of the * interpolator, particularly its use of the locator to use. + * + * For non AMR datasets, initialize a vtkCompositeInterpolatedVelocityField + * and set the FindCellStrategyType. */ void SetInterpolatorPrototype(vtkAbstractInterpolatedVelocityField* ivf); /** * Set the type of the velocity field interpolator to determine whether - * vtkInterpolatedVelocityField (INTERPOLATOR_WITH_DATASET_POINT_LOCATOR) or - * vtkCellLocatorInterpolatedVelocityField (INTERPOLATOR_WITH_CELL_LOCATOR) + * INTERPOLATOR_WITH_DATASET_POINT_LOCATOR or INTERPOLATOR_WITH_CELL_LOCATOR * is employed for locating cells during streamline integration. The latter * (adopting vtkAbstractCellLocator sub-classes such as vtkCellLocator and * vtkModifiedBSPTree) is more robust than the former (through vtkDataSet / diff --git a/Filters/FlowPaths/vtkVectorFieldTopology.h b/Filters/FlowPaths/vtkVectorFieldTopology.h index 2157147871ea..fcabff0d8fab 100644 --- a/Filters/FlowPaths/vtkVectorFieldTopology.h +++ b/Filters/FlowPaths/vtkVectorFieldTopology.h @@ -145,8 +145,7 @@ public: /** * Set the type of the velocity field interpolator to determine whether - * vtkInterpolatedVelocityField (INTERPOLATOR_WITH_DATASET_POINT_LOCATOR) or - * vtkCellLocatorInterpolatedVelocityField (INTERPOLATOR_WITH_CELL_LOCATOR) is employed for + * INTERPOLATOR_WITH_DATASET_POINT_LOCATOR or INTERPOLATOR_WITH_CELL_LOCATOR is employed for * locating cells during streamline integration. */ void SetInterpolatorType(int interpType); diff --git a/Filters/Generic/vtkGenericStreamTracer.cxx b/Filters/Generic/vtkGenericStreamTracer.cxx index b7ba121d703b..326e956c228c 100644 --- a/Filters/Generic/vtkGenericStreamTracer.cxx +++ b/Filters/Generic/vtkGenericStreamTracer.cxx @@ -978,7 +978,7 @@ void vtkGenericStreamTracer::Integrate(vtkGenericDataSet* input0, vtkPolyData* o break; } - // Make sure we use the dataset found by the vtkInterpolatedVelocityField + // Make sure we use the dataset found by the vtkCompositeInterpolatedVelocityField input = func->GetLastDataSet(); inVectors = input->GetAttributes()->GetAttribute( diff --git a/Filters/ParallelFlowPaths/Testing/Cxx/TestPStreamAMR.cxx b/Filters/ParallelFlowPaths/Testing/Cxx/TestPStreamAMR.cxx index d4098f026e5d..20ff99c3f09b 100644 --- a/Filters/ParallelFlowPaths/Testing/Cxx/TestPStreamAMR.cxx +++ b/Filters/ParallelFlowPaths/Testing/Cxx/TestPStreamAMR.cxx @@ -22,7 +22,6 @@ #include "vtkIdList.h" #include "vtkInformation.h" #include "vtkInformationVector.h" -#include "vtkInterpolatedVelocityField.h" #include "vtkMPIController.h" #include "vtkMath.h" #include "vtkNew.h" -- GitLab From 7a733cef790bf9101dd42039bd43f6df6618a2b8 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 2 May 2022 09:37:25 -0400 Subject: [PATCH 0207/1015] vtkParticleTracerBase: Change int to vtkTypeBool This is done so in the future they can become a bool. Also, InterpolatorPrototype has been deleted since it's not used. --- Filters/FlowPaths/vtkParticleTracerBase.h | 21 ++++++++++----------- 1 file changed, 10 insertions(+), 11 deletions(-) diff --git a/Filters/FlowPaths/vtkParticleTracerBase.h b/Filters/FlowPaths/vtkParticleTracerBase.h index 667301606fd2..8befee8ffa62 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.h +++ b/Filters/FlowPaths/vtkParticleTracerBase.h @@ -162,8 +162,8 @@ public: * redundant as the particles will be reinjected whenever the source changes * anyway */ - vtkGetMacro(ForceReinjectionEveryNSteps, int); - void SetForceReinjectionEveryNSteps(int); + vtkGetMacro(ForceReinjectionEveryNSteps, vtkTypeBool); + void SetForceReinjectionEveryNSteps(vtkTypeBool); ///@} ///@{ @@ -202,8 +202,8 @@ public: * the motion will be ignored and results will not be as expected. * The default is that StaticSeeds is 0. */ - vtkSetMacro(StaticSeeds, int); - vtkGetMacro(StaticSeeds, int); + vtkSetMacro(StaticSeeds, vtkTypeBool); + vtkGetMacro(StaticSeeds, vtkTypeBool); ///@} ///@{ @@ -216,8 +216,8 @@ public: * as this will invalidate all results. * The default is that StaticMesh is 0. */ - vtkSetMacro(StaticMesh, int); - vtkGetMacro(StaticMesh, int); + vtkSetMacro(StaticMesh, vtkTypeBool); + vtkGetMacro(StaticMesh, vtkTypeBool); ///@} ///@{ @@ -502,9 +502,9 @@ private: int ReinjectionCounter; // Important for Caching of Cells/Ids/Weights etc - int AllFixedGeometry; - int StaticMesh; - int StaticSeeds; + vtkTypeBool AllFixedGeometry; + vtkTypeBool StaticMesh; + vtkTypeBool StaticSeeds; std::vector InputTimeValues; double StartTime; @@ -518,7 +518,7 @@ private: bool FirstIteration; // Innjection parameters - int ForceReinjectionEveryNSteps; + vtkTypeBool ForceReinjectionEveryNSteps; vtkTimeStamp ParticleInjectionTime; bool HasCache; @@ -532,7 +532,6 @@ private: // The velocity interpolator vtkSmartPointer Interpolator; - vtkAbstractInterpolatedVelocityField* InterpolatorPrototype; // Data for time step CurrentTimeStep-1 and CurrentTimeStep vtkSmartPointer CachedData[2]; -- GitLab From 4b95c43b505e6572b42b3d38fd10c2a1b3cf4359 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 2 May 2022 09:50:05 -0400 Subject: [PATCH 0208/1015] vtkParticleTracerBase: Simplify GetSeedSources --- Filters/FlowPaths/vtkParticleTracerBase.cxx | 30 +++---------------- .../vtkPParticleTracerBase.cxx | 3 +- 2 files changed, 5 insertions(+), 28 deletions(-) diff --git a/Filters/FlowPaths/vtkParticleTracerBase.cxx b/Filters/FlowPaths/vtkParticleTracerBase.cxx index 637ed9d09d20..cd2b65c864fc 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.cxx +++ b/Filters/FlowPaths/vtkParticleTracerBase.cxx @@ -237,7 +237,7 @@ int vtkParticleTracerBase::RequestInformation(vtkInformation* vtkNotUsed(request // // Get list of input time step values this->InputTimeValues.resize(numberOfInputTimeSteps); - inInfo->Get(vtkStreamingDemandDrivenPipeline::TIME_STEPS(), &this->InputTimeValues[0]); + inInfo->Get(vtkStreamingDemandDrivenPipeline::TIME_STEPS(), this->InputTimeValues.data()); if (numberOfInputTimeSteps == 1 && this->DisableResetCache == 0) { // warning would be skipped in coprocessing work flow vtkWarningMacro(<< "Not enough input time steps for particle integration"); @@ -489,35 +489,13 @@ int vtkParticleTracerBase::InitializeInterpolator() std::vector vtkParticleTracerBase::GetSeedSources( vtkInformationVector* inputVector, int vtkNotUsed(timeStep)) { - int numSources = inputVector->GetNumberOfInformationObjects(); std::vector seedSources; - for (int idx = 0; idx < numSources; ++idx) + for (int idx = 0, max = inputVector->GetNumberOfInformationObjects(); idx < max; ++idx) { if (vtkInformation* inInfo = inputVector->GetInformationObject(idx)) { - vtkDataSet* dataSet = vtkDataSet::GetData(inInfo); - if (dataSet) - { - seedSources.push_back(dataSet); - continue; - } - - vtkDataObjectTree* dot = vtkDataObjectTree::GetData(inInfo); - if (dot) - { - // Add invididual blocks as seed sources to handle composite data seed sources - using Opts = vtk::DataObjectTreeOptions; - auto range = - vtk::Range(dot, Opts::TraverseSubTree | Opts::VisitOnlyLeaves | Opts::SkipEmptyNodes); - for (auto treeDobj : range) - { - vtkDataSet* treeDataSet = vtkDataSet::SafeDownCast(treeDobj); - if (treeDataSet) - { - seedSources.push_back(treeDataSet); - } - } - } + auto datasets = vtkCompositeDataSet::GetDataSets(vtkDataObject::GetData(inInfo)); + seedSources.insert(seedSources.end(), datasets.begin(), datasets.end()); } } return seedSources; diff --git a/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx b/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx index ef21499ce85d..4c77b53e8516 100644 --- a/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx +++ b/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx @@ -1,7 +1,7 @@ /*========================================================================= Program: Visualization Toolkit - Module: vtkParticleTracerBase.cxx + Module: vtkPParticleTracerBase.cxx Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen All rights reserved. @@ -18,7 +18,6 @@ #include "vtkCommunicator.h" #include "vtkCompositeDataSet.h" #include "vtkDataArray.h" -#include "vtkDataSetAttributes.h" #include "vtkInformation.h" #include "vtkInformationVector.h" #include "vtkMultiProcessController.h" -- GitLab From 8aaf5daa7a2b8a1541a78a2418bcf86627e13ff9 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 4 May 2022 07:37:27 -0400 Subject: [PATCH 0209/1015] vtkCompositeInterpolatedVelocityField: Add counters for DataSet hits/misses --- .../vtkCompositeInterpolatedVelocityField.cxx | 32 +++++++++++++------ .../vtkCompositeInterpolatedVelocityField.h | 10 ++++++ 2 files changed, 32 insertions(+), 10 deletions(-) diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx index 44404e325110..4c736f878990 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx @@ -29,6 +29,8 @@ vtkCompositeInterpolatedVelocityField::vtkCompositeInterpolatedVelocityField() { this->SetFindCellStrategy(vtkSmartPointer::New()); this->LastDataSetIndex = 0; + this->CacheDataSetHit = 0; + this->CacheDataSetMiss = 0; } //------------------------------------------------------------------------------ @@ -76,17 +78,20 @@ void vtkCompositeInterpolatedVelocityField::AddDataSet(vtkDataSet* dataset) //------------------------------------------------------------------------------ void vtkCompositeInterpolatedVelocityField::SetLastCellId(vtkIdType c, int dataindex) { - this->LastCellId = c; - this->LastDataSet = this->DataSets[dataindex]; - - // If the dataset changes, then the cached cell is invalidated. We might as - // well prefetch the cached cell either way. - if (this->LastCellId != -1) + if (this->LastCellId != c || this->LastDataSetIndex != dataindex) { - this->LastDataSet->GetCell(this->LastCellId, this->CurrentCell); - } + this->LastCellId = c; + this->LastDataSet = this->DataSets[dataindex]; + + // If the dataset changes, then the cached cell is invalidated. We might as + // well prefetch the cached cell either way. + if (this->LastCellId != -1) + { + this->LastDataSet->GetCell(this->LastCellId, this->CurrentCell); + } - this->LastDataSetIndex = dataindex; + this->LastDataSetIndex = dataindex; + } } //------------------------------------------------------------------------------ @@ -109,7 +114,8 @@ int vtkCompositeInterpolatedVelocityField::FunctionValues(double* x, double* f) if (!retVal) { - // Okay need to check other datasets since we are outside of the current dataset. + this->CacheDataSetMiss++; + // Okay need to check other datasets since we are outside the current dataset. for (this->LastDataSetIndex = 0; this->LastDataSetIndex < static_cast(this->DataSets.size()); this->LastDataSetIndex++) { @@ -130,6 +136,10 @@ int vtkCompositeInterpolatedVelocityField::FunctionValues(double* x, double* f) this->LastDataSet = this->DataSets[0]; return 0; } + else + { + this->CacheDataSetHit++; + } return retVal; } @@ -161,4 +171,6 @@ void vtkCompositeInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent ind os << indent << "Number of DataSets: " << this->DataSets.size() << endl; os << indent << "Last Dataset Index: " << this->LastDataSetIndex << endl; + os << indent << "CacheDataSetHit: " << this->CacheDataSetHit << endl; + os << indent << "CacheDataSetMiss: " << this->CacheDataSetMiss << endl; } diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h index bd1e289b2702..2f16de2d43b7 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h @@ -103,6 +103,14 @@ public: vtkGetMacro(LastDataSetIndex, int); ///@} + ///@{ + /** + * Get Cache DataSet hits and misses. + */ + vtkGetMacro(CacheDataSetHit, int); + vtkGetMacro(CacheDataSetMiss, int); + ///@} + /** * Copy essential parameters between instances of this class. See * vtkAbstractInterpolatedVelocityField for more information. @@ -125,6 +133,8 @@ protected: return this->Superclass::FunctionValues(ds, x, f); } + int CacheDataSetHit; + int CacheDataSetMiss; int LastDataSetIndex; std::vector DataSets; -- GitLab From 5d29d713503368f2f1b049f3bc1f9033629fbacb Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 4 May 2022 08:10:04 -0400 Subject: [PATCH 0210/1015] vtkCompositeInterpolatedVelocityField: Add InsideTest and Store bounds Bounds are useful for fast point-in-dataset test --- .../vtkCompositeInterpolatedVelocityField.cxx | 119 +++++++++++++++--- .../vtkCompositeInterpolatedVelocityField.h | 21 +++- 2 files changed, 117 insertions(+), 23 deletions(-) diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx index 4c736f878990..8c624f69db70 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx @@ -21,6 +21,22 @@ #include "vtkObjectFactory.h" #include "vtkPointData.h" +#include + +//------------------------------------------------------------------------------ +vtkCompositeInterpolatedVelocityField::DataSetBoundsInformation::DataSetBoundsInformation() + : DataSet(nullptr) +{ +} + +//------------------------------------------------------------------------------ +vtkCompositeInterpolatedVelocityField::DataSetBoundsInformation::DataSetBoundsInformation( + vtkDataSet* ds) + : DataSet(ds) +{ + ds->GetBounds(this->Bounds.data()); +} + //------------------------------------------------------------------------------ vtkStandardNewMacro(vtkCompositeInterpolatedVelocityField); @@ -50,14 +66,14 @@ void vtkCompositeInterpolatedVelocityField::CopyParameters( { return; } - this->DataSets = obj->DataSets; + this->DataSetsBoundsInfo = obj->DataSetsBoundsInfo; // The weights must be copied as well this->Weights.resize(obj->Weights.size()); } //------------------------------------------------------------------------------ -void vtkCompositeInterpolatedVelocityField::AddDataSet(vtkDataSet* dataset) +void vtkCompositeInterpolatedVelocityField::AddDataSet(vtkDataSet* dataset, size_t maxCellSize) { if (!dataset) { @@ -66,12 +82,15 @@ void vtkCompositeInterpolatedVelocityField::AddDataSet(vtkDataSet* dataset) } // insert the dataset (do NOT register the dataset to 'this') - this->DataSets.push_back(dataset); + this->DataSetsBoundsInfo.emplace_back(dataset); - size_t size = dataset->GetMaxCellSize(); - if (size > this->Weights.size()) + if (maxCellSize == 0) + { + maxCellSize = dataset->GetMaxCellSize(); + } + if (maxCellSize > this->Weights.size()) { - this->Weights.resize(size); + this->Weights.resize(maxCellSize); } } @@ -81,7 +100,7 @@ void vtkCompositeInterpolatedVelocityField::SetLastCellId(vtkIdType c, int datai if (this->LastCellId != c || this->LastDataSetIndex != dataindex) { this->LastCellId = c; - this->LastDataSet = this->DataSets[dataindex]; + this->LastDataSet = this->DataSetsBoundsInfo[dataindex].DataSet; // If the dataset changes, then the cached cell is invalidated. We might as // well prefetch the cached cell either way. @@ -98,9 +117,9 @@ void vtkCompositeInterpolatedVelocityField::SetLastCellId(vtkIdType c, int datai int vtkCompositeInterpolatedVelocityField::FunctionValues(double* x, double* f) { vtkDataSet* ds; - if (!this->LastDataSet && !this->DataSets.empty()) + if (!this->LastDataSet && !this->DataSetsBoundsInfo.empty()) { - ds = this->DataSets[0]; + ds = this->DataSetsBoundsInfo[0].DataSet; this->LastDataSet = ds; this->LastDataSetIndex = 0; } @@ -116,24 +135,90 @@ int vtkCompositeInterpolatedVelocityField::FunctionValues(double* x, double* f) { this->CacheDataSetMiss++; // Okay need to check other datasets since we are outside the current dataset. - for (this->LastDataSetIndex = 0; - this->LastDataSetIndex < static_cast(this->DataSets.size()); this->LastDataSetIndex++) + const int datasetsInfoSize = static_cast(this->DataSetsBoundsInfo.size()); + static const double delta[3] = { 0.0, 0.0, 0.0 }; + for (this->LastDataSetIndex = 0; this->LastDataSetIndex < datasetsInfoSize; + ++this->LastDataSetIndex) + { + ds = this->DataSetsBoundsInfo[this->LastDataSetIndex].DataSet; + if (ds && ds->GetNumberOfPoints() > 0 && ds != this->LastDataSet) + { + this->ClearLastCellId(); + const auto& bounds = this->DataSetsBoundsInfo[this->LastDataSetIndex].Bounds; + retVal = vtkMath::PointIsWithinBounds(x, bounds.data(), delta); + if (retVal) + { + retVal = this->FunctionValues(ds, x, f); + if (retVal) + { + this->LastDataSet = ds; + return retVal; + } + } + } + } + this->LastCellId = -1; + this->LastDataSetIndex = 0; + this->LastDataSet = this->DataSetsBoundsInfo[0].DataSet; + return 0; + } + else + { + this->CacheDataSetHit++; + } + + return retVal; +} + +//------------------------------------------------------------------------------ +int vtkCompositeInterpolatedVelocityField::InsideTest(double* x) +{ + vtkDataSet* ds; + if (!this->LastDataSet && !this->DataSetsBoundsInfo.empty()) + { + ds = this->DataSetsBoundsInfo[0].DataSet; + this->LastDataSet = ds; + this->LastDataSetIndex = 0; + } + else + { + ds = this->LastDataSet; + } + + // Use the superclass's method first as it is faster. + auto strategy = this->FunctionCacheMap.find(ds)->second.Strategy; + int retVal = this->FindAndUpdateCell(ds, strategy, x); + + if (!retVal) + { + this->CacheDataSetMiss++; + // Okay need to check other datasets since we are outside the current dataset. + const int datasetsInfoSize = static_cast(this->DataSetsBoundsInfo.size()); + static const double delta[3] = { 0.0, 0.0, 0.0 }; + for (this->LastDataSetIndex = 0; this->LastDataSetIndex < datasetsInfoSize; + this->LastDataSetIndex++) { - ds = this->DataSets[this->LastDataSetIndex]; + ds = this->DataSetsBoundsInfo[this->LastDataSetIndex].DataSet; if (ds && ds->GetNumberOfPoints() > 0 && ds != this->LastDataSet) { this->ClearLastCellId(); - retVal = this->FunctionValues(ds, x, f); + const auto& bounds = this->DataSetsBoundsInfo[this->LastDataSetIndex].Bounds; + retVal = vtkMath::PointIsWithinBounds(x, bounds.data(), delta); if (retVal) { - this->LastDataSet = ds; - return retVal; + strategy = this->FunctionCacheMap.find(ds)->second.Strategy; + retVal = this->FindAndUpdateCell(ds, strategy, x); + if (retVal) + { + this->LastDataSet = ds; + return retVal; + } } } } this->LastCellId = -1; this->LastDataSetIndex = 0; - this->LastDataSet = this->DataSets[0]; + this->LastDataSet = this->DataSetsBoundsInfo[0].DataSet; return 0; } else @@ -169,7 +254,7 @@ void vtkCompositeInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent ind { this->Superclass::PrintSelf(os, indent); - os << indent << "Number of DataSets: " << this->DataSets.size() << endl; + os << indent << "Number of DataSets: " << this->DataSetsBoundsInfo.size() << endl; os << indent << "Last Dataset Index: " << this->LastDataSetIndex << endl; os << indent << "CacheDataSetHit: " << this->CacheDataSetHit << endl; os << indent << "CacheDataSetMiss: " << this->CacheDataSetMiss << endl; diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h index 2f16de2d43b7..3aeafbc818b9 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h @@ -38,12 +38,10 @@ #include "vtkAbstractInterpolatedVelocityField.h" #include "vtkFiltersFlowPathsModule.h" // For export macro -#include // STL Header; Required for vector +#include // For array +#include // For vector class vtkDataSet; -class vtkDataArray; -class vtkPointData; -class vtkGenericCell; class VTKFILTERSFLOWPATHS_EXPORT vtkCompositeInterpolatedVelocityField : public vtkAbstractInterpolatedVelocityField @@ -62,7 +60,6 @@ public: */ static vtkCompositeInterpolatedVelocityField* New(); - ///@{ /** * Add a dataset for implicit velocity function evaluation. If more than * one dataset is added, the evaluation point is searched in all until a @@ -77,6 +74,11 @@ public: */ int FunctionValues(double* x, double* f) override; + /** + * Check if point x is inside the dataset. + */ + int InsideTest(double* x); + /** * Project the provided point on current cell, current dataset. */ @@ -136,7 +138,14 @@ protected: int CacheDataSetHit; int CacheDataSetMiss; int LastDataSetIndex; - std::vector DataSets; + struct DataSetBoundsInformation + { + vtkDataSet* DataSet; + std::array Bounds{}; + DataSetBoundsInformation(); + DataSetBoundsInformation(vtkDataSet* ds); + }; + std::vector DataSetsBoundsInfo; private: vtkCompositeInterpolatedVelocityField(const vtkCompositeInterpolatedVelocityField&) = delete; -- GitLab From 9192897e2801162cf76d44c1223eb7dacc357ffa Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 5 May 2022 21:22:57 -0400 Subject: [PATCH 0211/1015] vtkCompositeInterpolatedVelocityField: Add maxCellSize param to AddDataSet Also Vectorize FunctionCacheMap and rename it to DataSetsInfo --- .../vtkAMRInterpolatedVelocityField.cxx | 2 +- .../vtkAbstractInterpolatedVelocityField.cxx | 82 +++++++++---------- .../vtkAbstractInterpolatedVelocityField.h | 16 ++-- .../vtkCompositeInterpolatedVelocityField.cxx | 9 +- .../vtkCompositeInterpolatedVelocityField.h | 5 +- 5 files changed, 57 insertions(+), 57 deletions(-) diff --git a/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx index b0f6dfcd3f86..1b282d53f36c 100644 --- a/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkAMRInterpolatedVelocityField.cxx @@ -96,7 +96,7 @@ int vtkAMRInterpolatedVelocityField::SelfInitialize() : vectors = dataset->GetAttributesAsFieldData(this->VectorsType)->GetArray(this->VectorsSelection)); - this->AddToFunctionCache(dataset, nullptr, vectors); + this->AddToDataSetsInfo(dataset, nullptr, vectors); } // Indicate that the subclass has taken over initialization. diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx index 2e3dacc0b72c..48baa98762a9 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx @@ -28,8 +28,6 @@ #include "vtkPolyData.h" #include "vtkUnstructuredGrid.h" -#include //make_pair - //------------------------------------------------------------------------------ vtkCxxSetObjectMacro(vtkAbstractInterpolatedVelocityField, FindCellStrategy, vtkFindCellStrategy); @@ -79,16 +77,14 @@ vtkAbstractInterpolatedVelocityField::~vtkAbstractInterpolatedVelocityField() // Need to free strategies and other information associated with each // dataset. There is a special case where the strategy cannot be deleted // because is has been specified by the user. - vtkFindCellStrategy* strategy; - for (auto& functionCache : this->FunctionCacheMap) + for (auto& datasetInfo : this->DataSetsInfo) { - strategy = functionCache.second.Strategy; - if (strategy != nullptr) + if (datasetInfo.Strategy != nullptr) { - strategy->Delete(); + datasetInfo.Strategy->Delete(); } } - this->FunctionCacheMap.clear(); + this->DataSetsInfo.clear(); this->SetFindCellStrategy(nullptr); } @@ -96,8 +92,8 @@ vtkAbstractInterpolatedVelocityField::~vtkAbstractInterpolatedVelocityField() //------------------------------------------------------------------------------ void vtkAbstractInterpolatedVelocityField::Initialize(vtkCompositeDataSet* compDS, int initStrategy) { - // Clear the function cache, subclasses may want to put stuff into it. - this->FunctionCacheMap.clear(); + // Clear the datasets info, subclasses may want to put stuff into it. + this->DataSetsInfo.clear(); // See whether the subclass should take over the initialization process. if (this->SelfInitialize()) @@ -144,38 +140,34 @@ void vtkAbstractInterpolatedVelocityField::Initialize(vtkCompositeDataSet* compD { strategyClone = strategy->NewInstance(); } - this->AddToFunctionCache(dataset, strategyClone, vectors); + this->AddToDataSetsInfo(dataset, strategyClone, vectors); } // for all datasets of composite dataset // Now initialize the new strategies - for (auto& functionCache : this->FunctionCacheMap) + for (auto& datasetInfo : this->DataSetsInfo) { - auto& dataset = functionCache.first; - auto& strategyLocal = functionCache.second.Strategy; - if (auto pointSet = vtkPointSet::SafeDownCast(dataset)) + if (auto pointSet = vtkPointSet::SafeDownCast(datasetInfo.DataSet)) { - strategyLocal->CopyParameters(strategy); - strategyLocal->Initialize(pointSet); + datasetInfo.Strategy->CopyParameters(strategy); + datasetInfo.Strategy->Initialize(pointSet); } } // Now perform initialization on certain data sets - for (auto& functionCache : this->FunctionCacheMap) + for (auto& datasetInfo : this->DataSetsInfo) { - auto& dataset = functionCache.first; - dataset->ComputeBounds(); - if (auto polyData = vtkPolyData::SafeDownCast(dataset)) + datasetInfo.DataSet->ComputeBounds(); + if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) { polyData->BuildCells(); } - if (functionCache.second.Strategy != nullptr && - vtkClosestPointStrategy::SafeDownCast(functionCache.second.Strategy) != nullptr) + if (vtkClosestPointStrategy::SafeDownCast(datasetInfo.Strategy)) { - if (auto ugrid = vtkUnstructuredGrid::SafeDownCast(dataset)) + if (auto ugrid = vtkUnstructuredGrid::SafeDownCast(datasetInfo.DataSet)) { ugrid->BuildLinks(); } - else if (auto polyData = vtkPolyData::SafeDownCast(dataset)) + else if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) { polyData->BuildLinks(); } @@ -205,10 +197,10 @@ int vtkAbstractInterpolatedVelocityField::FunctionValues(vtkDataSet* dataset, do // Retrieve cached function array vtkDataArray* vectors = nullptr; - auto datasetFunctionCacheIter = this->FunctionCacheMap.find(dataset); - if (datasetFunctionCacheIter != this->FunctionCacheMap.end()) + auto datasetInfoIter = this->GetDataSetInfo(dataset); + if (datasetInfoIter != this->DataSetsInfo.end()) { - vectors = datasetFunctionCacheIter->second.Vectors; + vectors = datasetInfoIter->Vectors; } if (!vectors) @@ -220,7 +212,7 @@ int vtkAbstractInterpolatedVelocityField::FunctionValues(vtkDataSet* dataset, do // Compute function values for the dataset f[0] = f[1] = f[2] = 0.0; - if (!this->FindAndUpdateCell(dataset, datasetFunctionCacheIter->second.Strategy, x)) + if (!this->FindAndUpdateCell(dataset, datasetInfoIter->Strategy, x)) { vectors = nullptr; return 0; @@ -490,36 +482,42 @@ void vtkAbstractInterpolatedVelocityField::CopyParameters( this->VectorsType = from->VectorsType; this->SetVectorsSelection(from->VectorsSelection); - // Copy the function cache, including possibly strategies, from the + // Copy the datasets' info, including possibly strategies, from the // prototype. In a threaded situation, there must be separate strategies // for each interpolated velocity field. this->InitializationState = from->InitializationState; - this->FunctionCacheMap.clear(); - for (const auto& cacheMap : from->FunctionCacheMap) + this->DataSetsInfo.clear(); + for (const auto& datasetInfo : from->DataSetsInfo) { vtkFindCellStrategy* strategy = nullptr; - if (cacheMap.second.Strategy != nullptr) + if (datasetInfo.Strategy != nullptr) { - strategy = cacheMap.second.Strategy->NewInstance(); - strategy->CopyParameters(cacheMap.second.Strategy); - strategy->Initialize(vtkPointSet::SafeDownCast(cacheMap.first)); + strategy = datasetInfo.Strategy->NewInstance(); + strategy->CopyParameters(datasetInfo.Strategy); + strategy->Initialize(vtkPointSet::SafeDownCast(datasetInfo.DataSet)); } - vtkDataArray* vectors = cacheMap.second.Vectors; - this->AddToFunctionCache(cacheMap.first, strategy, vectors); + this->AddToDataSetsInfo(datasetInfo.DataSet, strategy, datasetInfo.Vectors); } } //------------------------------------------------------------------------------ -void vtkAbstractInterpolatedVelocityField::AddToFunctionCache( +void vtkAbstractInterpolatedVelocityField::AddToDataSetsInfo( vtkDataSet* ds, vtkFindCellStrategy* s, vtkDataArray* vectors) { - this->FunctionCacheMap.insert(std::make_pair(ds, vtkFunctionCache(s, vectors))); + this->DataSetsInfo.emplace_back(ds, s, vectors); +} + +std::vector::iterator +vtkAbstractInterpolatedVelocityField::GetDataSetInfo(vtkDataSet* dataset) +{ + return std::find_if(this->DataSetsInfo.begin(), this->DataSetsInfo.end(), + [dataset](const vtkDataSetInformation& datasetInfo) { return datasetInfo.DataSet == dataset; }); } //------------------------------------------------------------------------------ -size_t vtkAbstractInterpolatedVelocityField::GetFunctionCacheSize() +size_t vtkAbstractInterpolatedVelocityField::GetDataSetsInfoSize() { - return this->FunctionCacheMap.size(); + return this->DataSetsInfo.size(); } //------------------------------------------------------------------------------ diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h index 626508402a4b..a052785f8c47 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h @@ -82,7 +82,6 @@ #include "vtkNew.h" // for vtkNew #include "vtkSmartPointer.h" // for vtkSmartPointer -#include // for cache #include // for weights class vtkCellLocatorStrategy; @@ -302,13 +301,15 @@ protected: // associated with each dataset forming the velocity field. Note that the // find cells strategy can be null, this means the find cell is invoked // using the dataset's FindCell() method. - struct vtkFunctionCache + struct vtkDataSetInformation { + vtkDataSet* DataSet; vtkFindCellStrategy* Strategy; vtkDataArray* Vectors; - vtkFunctionCache(vtkFindCellStrategy* strategy, vtkDataArray* vectors) - : Strategy(strategy) + vtkDataSetInformation(vtkDataSet* dataSet, vtkFindCellStrategy* strategy, vtkDataArray* vectors) + : DataSet(dataSet) + , Strategy(strategy) , Vectors(vectors) { } @@ -319,7 +320,8 @@ protected: * cached information) associated with each dataset. */ vtkFindCellStrategy* FindCellStrategy; - std::map FunctionCacheMap; + std::vector DataSetsInfo; + std::vector::iterator GetDataSetInfo(vtkDataSet* dataset); ///@} ///@{ @@ -374,8 +376,8 @@ protected: * a dataset, find cell strtegy, and associated vectors to FunctionHashMap. */ virtual int SelfInitialize() { return 0; } - void AddToFunctionCache(vtkDataSet*, vtkFindCellStrategy*, vtkDataArray* vectors); - size_t GetFunctionCacheSize(); + void AddToDataSetsInfo(vtkDataSet*, vtkFindCellStrategy*, vtkDataArray* vectors); + size_t GetDataSetsInfoSize(); ///@} private: diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx index 8c624f69db70..291a7b8b470c 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.cxx @@ -186,7 +186,7 @@ int vtkCompositeInterpolatedVelocityField::InsideTest(double* x) } // Use the superclass's method first as it is faster. - auto strategy = this->FunctionCacheMap.find(ds)->second.Strategy; + auto strategy = this->GetDataSetInfo(ds)->Strategy; int retVal = this->FindAndUpdateCell(ds, strategy, x); if (!retVal) @@ -206,7 +206,7 @@ int vtkCompositeInterpolatedVelocityField::InsideTest(double* x) retVal = vtkMath::PointIsWithinBounds(x, bounds.data(), delta); if (retVal) { - strategy = this->FunctionCacheMap.find(ds)->second.Strategy; + strategy = this->GetDataSetInfo(ds)->Strategy; retVal = this->FindAndUpdateCell(ds, strategy, x); if (retVal) { @@ -236,10 +236,9 @@ int vtkCompositeInterpolatedVelocityField::SnapPointOnCell(double* pOrigin, doub { return 0; } - auto datasetFunctionCacheIter = this->FunctionCacheMap.find(this->LastDataSet); + auto datasetInfo = this->GetDataSetInfo(this->LastDataSet); // Find the closest cell - if (!this->FindAndUpdateCell( - this->LastDataSet, datasetFunctionCacheIter->second.Strategy, pOrigin)) + if (!this->FindAndUpdateCell(this->LastDataSet, datasetInfo->Strategy, pOrigin)) { return 0; } diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h index 3aeafbc818b9..085a69cd4b75 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h @@ -64,9 +64,10 @@ public: * Add a dataset for implicit velocity function evaluation. If more than * one dataset is added, the evaluation point is searched in all until a * match is found. THIS FUNCTION DOES NOT CHANGE THE REFERENCE COUNT OF - * dataset FOR THREAD SAFETY REASONS. + * dataset FOR THREAD SAFETY REASONS. MaxCellSize can be passed to avoid + * recomputing GetMaxCellSize(). */ - virtual void AddDataSet(vtkDataSet* dataset); + virtual void AddDataSet(vtkDataSet* dataset, size_t maxCellSize = 0); using Superclass::FunctionValues; /** -- GitLab From 636424fbbb774dc856caf4220416a3cf9ded84c1 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 5 May 2022 21:24:33 -0400 Subject: [PATCH 0212/1015] vtkTemporalInterpolatedVelocity: Support LinearTransformation/SameTopology vtkTemporalInterpolatedVelocity was using vtkCachingInterpolatedVelocityField. vtkCachingInterpolatedVelocityField was an old class which can now be replaced by vtkCompositeInterpolatedVelocityField. By doing that we can select a find cell strategy. Also, vtkParticleTracerBase along with vtkTemporalInterpolatedVelocity they support datasets that at each time-step they are a linear transformation of the first time-step, or they have the same SameTopology. --- Common/DataModel/vtkPolyData.h | 6 + Common/DataModel/vtkUnstructuredGrid.cxx | 4 +- Common/DataModel/vtkUnstructuredGrid.h | 11 +- .../vtkAbstractInterpolatedVelocityField.cxx | 28 +- .../vtkAbstractInterpolatedVelocityField.h | 3 + .../vtkCachingInterpolatedVelocityField.cxx | 3 + .../vtkCachingInterpolatedVelocityField.h | 8 +- .../vtkCompositeInterpolatedVelocityField.h | 1 + Filters/FlowPaths/vtkParticleTracerBase.cxx | 125 +++-- Filters/FlowPaths/vtkParticleTracerBase.h | 88 ++- .../vtkTemporalInterpolatedVelocityField.cxx | 522 ++++++++++++++---- .../vtkTemporalInterpolatedVelocityField.h | 130 ++++- .../Testing/Cxx/TestPParticleTracers.cxx | 6 +- .../vtkPParticleTracerBase.cxx | 6 +- 14 files changed, 749 insertions(+), 192 deletions(-) diff --git a/Common/DataModel/vtkPolyData.h b/Common/DataModel/vtkPolyData.h index 4bf379a56d81..39bbc971e0bc 100644 --- a/Common/DataModel/vtkPolyData.h +++ b/Common/DataModel/vtkPolyData.h @@ -379,6 +379,12 @@ public: */ void BuildLinks(int initialSize = 0); + /** + * Set/Get the links that you created possibly without using BuildLinks. + */ + vtkSetSmartPointerMacro(Links, vtkCellLinks); + vtkGetSmartPointerMacro(Links, vtkCellLinks); + /** * Release data structure that allows random access of the cells. This must * be done before a 2nd call to BuildLinks(). DeleteCells implicitly deletes diff --git a/Common/DataModel/vtkUnstructuredGrid.cxx b/Common/DataModel/vtkUnstructuredGrid.cxx index 2f6c7900757e..94cc366dd0b0 100644 --- a/Common/DataModel/vtkUnstructuredGrid.cxx +++ b/Common/DataModel/vtkUnstructuredGrid.cxx @@ -1550,8 +1550,8 @@ void vtkUnstructuredGrid::SetCells(vtkUnsignedCharArray* cellTypes, vtkCellArray //------------------------------------------------------------------------------ void vtkUnstructuredGrid::BuildLinks() { - // Create appropriate locator. Currently it's either a vtkCellLocator (when - // the dataset is editable) or vtkStaticCellLocator (when the dataset is + // Create appropriate links. Currently, it's either a vtkCellLinks (when + // the dataset is editable) or vtkStaticCellLinks (when the dataset is // not editable). vtkIdType numPts = this->GetNumberOfPoints(); if (!this->Editable) diff --git a/Common/DataModel/vtkUnstructuredGrid.h b/Common/DataModel/vtkUnstructuredGrid.h index aee4b2487d7d..b7a91efbb2da 100644 --- a/Common/DataModel/vtkUnstructuredGrid.h +++ b/Common/DataModel/vtkUnstructuredGrid.h @@ -28,10 +28,11 @@ #ifndef vtkUnstructuredGrid_h #define vtkUnstructuredGrid_h -#include "vtkCellArray.h" //inline GetCellPoints() +#include "vtkAbstractCellLinks.h" // For vtkAbstractCellLinks +#include "vtkCellArray.h" // inline GetCellPoints() #include "vtkCommonDataModelModule.h" // For export macro #include "vtkDeprecation.h" // For deprecation -#include "vtkIdTypeArray.h" //inline GetCellPoints() +#include "vtkIdTypeArray.h" // inline GetCellPoints() #include "vtkUnstructuredGridBase.h" #include "vtkSmartPointer.h" // for smart pointer @@ -260,6 +261,12 @@ public: */ void BuildLinks(); + /** + * Set/Get the links that you created possibly without using BuildLinks. + */ + vtkSetSmartPointerMacro(Links, vtkAbstractCellLinks); + vtkGetSmartPointerMacro(Links, vtkAbstractCellLinks); + /** * Get the cell links. The cell links will be one of nullptr=0; * vtkCellLinks=1; vtkStaticCellLinksTemplate=2; diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx index 48baa98762a9..6d9c6728c968 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx @@ -157,10 +157,6 @@ void vtkAbstractInterpolatedVelocityField::Initialize(vtkCompositeDataSet* compD for (auto& datasetInfo : this->DataSetsInfo) { datasetInfo.DataSet->ComputeBounds(); - if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) - { - polyData->BuildCells(); - } if (vtkClosestPointStrategy::SafeDownCast(datasetInfo.Strategy)) { if (auto ugrid = vtkUnstructuredGrid::SafeDownCast(datasetInfo.DataSet)) @@ -169,6 +165,7 @@ void vtkAbstractInterpolatedVelocityField::Initialize(vtkCompositeDataSet* compD } else if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) { + // Build links calls BuildCells internally polyData->BuildLinks(); } } @@ -441,15 +438,22 @@ int vtkAbstractInterpolatedVelocityField::GetLastLocalCoordinates(double pcoords //------------------------------------------------------------------------------ void vtkAbstractInterpolatedVelocityField::FastCompute(vtkDataArray* vectors, double f[3]) +{ + this->FastCompute(this, vectors, f); +} + +//------------------------------------------------------------------------------ +void vtkAbstractInterpolatedVelocityField::FastCompute( + vtkAbstractInterpolatedVelocityField* inIVF, vtkDataArray* vectors, double f[3]) { int pntIdx; - int numPts = this->CurrentCell->GetNumberOfPoints(); + int numPts = inIVF->CurrentCell->GetNumberOfPoints(); double vector[3]; f[0] = f[1] = f[2] = 0.0; for (int i = 0; i < numPts; i++) { - pntIdx = this->CurrentCell->PointIds->GetId(i); + pntIdx = inIVF->CurrentCell->PointIds->GetId(i); vectors->GetTuple(pntIdx, vector); f[0] += vector[0] * this->Weights[i]; f[1] += vector[1] * this->Weights[i]; @@ -459,14 +463,20 @@ void vtkAbstractInterpolatedVelocityField::FastCompute(vtkDataArray* vectors, do //------------------------------------------------------------------------------ bool vtkAbstractInterpolatedVelocityField::InterpolatePoint(vtkPointData* outPD, vtkIdType outIndex) +{ + return this->InterpolatePoint(this, outPD, outIndex); +} + +//------------------------------------------------------------------------------ +bool vtkAbstractInterpolatedVelocityField::InterpolatePoint( + vtkAbstractInterpolatedVelocityField* inIVF, vtkPointData* outPD, vtkIdType outIndex) { if (!this->LastDataSet) { return false; } - - outPD->InterpolatePoint( - this->LastDataSet->GetPointData(), outIndex, this->CurrentCell->PointIds, this->Weights.data()); + vtkPointData* inPD = inIVF->LastDataSet->GetPointData(); + outPD->InterpolatePoint(inPD, outIndex, this->CurrentCell->PointIds, this->Weights.data()); return true; } diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h index a052785f8c47..27c6235e72a9 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.h @@ -361,7 +361,10 @@ protected: * vtkTemporalInterpolatedVelocityField */ void FastCompute(vtkDataArray* vectors, double f[3]); + void FastCompute(vtkAbstractInterpolatedVelocityField* inIVF, vtkDataArray* vectors, double f[3]); bool InterpolatePoint(vtkPointData* outPD, vtkIdType outIndex); + bool InterpolatePoint( + vtkAbstractInterpolatedVelocityField* inIVF, vtkPointData* outPD, vtkIdType outIndex); vtkGenericCell* GetLastCell() { return (this->LastCellId != -1) ? this->CurrentCell.Get() : nullptr; diff --git a/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx index 905bc881dbb7..798899726831 100644 --- a/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.cxx @@ -12,6 +12,9 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +// VTK_DEPRECATED_IN_9_2_0() warnings for this class. +#define VTK_DEPRECATION_LEVEL 0 + #include "vtkCachingInterpolatedVelocityField.h" #include "vtkCellLocator.h" diff --git a/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.h index 0c514d1c9b71..9644490e51d1 100644 --- a/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCachingInterpolatedVelocityField.h @@ -44,6 +44,7 @@ #ifndef vtkCachingInterpolatedVelocityField_h #define vtkCachingInterpolatedVelocityField_h +#include "vtkDeprecation.h" // for VTK_DEPRECATED_IN_9_2_0 #include "vtkFiltersFlowPathsModule.h" // For export macro #include "vtkFunctionSet.h" #include "vtkSmartPointer.h" // this is allowed @@ -64,7 +65,10 @@ class IVFCacheList : public std::vector }; //--------------------------------------------------------------------------- -class VTKFILTERSFLOWPATHS_EXPORT vtkCachingInterpolatedVelocityField : public vtkFunctionSet +class VTK_DEPRECATED_IN_9_2_0( + "Use vtkCompositeInterpolatedVelocityField instead of vtkCachingInterpolatedVelocityField " + "and set the desired strategy.") VTKFILTERSFLOWPATHS_EXPORT vtkCachingInterpolatedVelocityField + : public vtkFunctionSet { public: vtkTypeMacro(vtkCachingInterpolatedVelocityField, vtkFunctionSet); @@ -214,3 +218,5 @@ public: #endif /* DOXYGEN_SHOULD_SKIP_THIS */ #endif + +// VTK-HeaderTest-Exclude: vtkCachingInterpolatedVelocityField.h diff --git a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h index 085a69cd4b75..99c7bb1818d8 100644 --- a/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkCompositeInterpolatedVelocityField.h @@ -124,6 +124,7 @@ protected: vtkCompositeInterpolatedVelocityField(); ~vtkCompositeInterpolatedVelocityField() override; + friend class vtkTemporalInterpolatedVelocityField; /** * Evaluate the velocity field f at point (x, y, z) in a specified dataset * by either involving vtkPointLocator, via vtkPointSet::FindCell(), in diff --git a/Filters/FlowPaths/vtkParticleTracerBase.cxx b/Filters/FlowPaths/vtkParticleTracerBase.cxx index cd2b65c864fc..4f0300537502 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.cxx +++ b/Filters/FlowPaths/vtkParticleTracerBase.cxx @@ -12,15 +12,19 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +// VTK_DEPRECATED_IN_9_2_0() warnings for this class. +#define VTK_DEPRECATION_LEVEL 0 + #include "vtkParticleTracerBase.h" #include "vtkAbstractParticleWriter.h" #include "vtkCellArray.h" #include "vtkCellData.h" +#include "vtkCellLocatorStrategy.h" +#include "vtkClosestPointStrategy.h" #include "vtkCompositeDataIterator.h" #include "vtkDataObjectTreeRange.h" #include "vtkDoubleArray.h" -#include "vtkExecutive.h" #include "vtkFloatArray.h" #include "vtkGenericCell.h" #include "vtkInformation.h" @@ -38,7 +42,6 @@ #include "vtkSmartPointer.h" #include "vtkStreamingDemandDrivenPipeline.h" #include "vtkTemporalInterpolatedVelocityField.h" -#include #include #include @@ -57,7 +60,9 @@ const double vtkParticleTracerBase::Epsilon = 1.0E-12; using namespace vtkParticleTracerBaseNamespace; +using IDStates = vtkTemporalInterpolatedVelocityField::IDStates; +//------------------------------------------------------------------------------ vtkCxxSetObjectMacro(vtkParticleTracerBase, ParticleWriter, vtkAbstractParticleWriter); vtkCxxSetObjectMacro(vtkParticleTracerBase, Integrator, vtkInitialValueProblemSolver); @@ -114,7 +119,7 @@ vtkParticleTracerBase::vtkParticleTracerBase() this->ForceReinjectionEveryNSteps = 0; this->ReinjectionCounter = 0; this->AllFixedGeometry = 1; - this->StaticMesh = 0; + this->MeshOverTime = MeshOverTimeTypes::DIFFERENT; this->StaticSeeds = 0; this->ComputeVorticity = true; this->IgnorePipelineTime = 1; @@ -163,7 +168,6 @@ vtkParticleTracerBase::~vtkParticleTracerBase() this->CachedData[1] = nullptr; this->SetIntegrator(nullptr); - this->SetInterpolatorPrototype(nullptr); } //------------------------------------------------------------------------------ @@ -364,6 +368,36 @@ int vtkParticleTracerBase::RequestUpdateExtent(vtkInformation* vtkNotUsed(reques return 1; } +//------------------------------------------------------------------------------ +void vtkParticleTracerBase::SetInterpolatorType(int interpolatorType) +{ + this->Interpolator->SetMeshOverTime(this->MeshOverTime); + if (interpolatorType == INTERPOLATOR_WITH_CELL_LOCATOR) + { + // create an interpolator equipped with a cell locator (by default) + vtkNew strategy; + this->Interpolator->SetFindCellStrategy(strategy); + } + else + { + // create an interpolator equipped with a point locator + auto strategy = vtkSmartPointer::New(); + this->Interpolator->SetFindCellStrategy(strategy); + } +} + +//------------------------------------------------------------------------------ +void vtkParticleTracerBase::SetInterpolatorTypeToDataSetPointLocator() +{ + this->SetInterpolatorType(static_cast(INTERPOLATOR_WITH_DATASET_POINT_LOCATOR)); +} + +//------------------------------------------------------------------------------ +void vtkParticleTracerBase::SetInterpolatorTypeToCellLocator() +{ + this->SetInterpolatorType(static_cast(INTERPOLATOR_WITH_CELL_LOCATOR)); +} + //------------------------------------------------------------------------------ int vtkParticleTracerBase::InitializeInterpolator() { @@ -372,11 +406,9 @@ int vtkParticleTracerBase::InitializeInterpolator() vtkErrorMacro("Missing data set to process."); return VTK_ERROR; } - // // When Multiblock arrays are processed, some may be empty // if the first is empty, we won't find the correct vector name // so scan until we get one - // vtkSmartPointer iterP; iterP.TakeReference(this->CachedData[0]->NewIterator()); iterP->GoToFirstItem(); @@ -397,25 +429,27 @@ int vtkParticleTracerBase::InitializeInterpolator() return VTK_ERROR; } - vtkDebugMacro(<< "Interpolator using array " << vecname); + // create Interpolator if needed + if (this->Interpolator->GetFindCellStrategy() == nullptr) + { + // cell locator is the default; + this->SetInterpolatorTypeToCellLocator(); + } this->Interpolator->SelectVectors(vecname); - this->AllFixedGeometry = 1; - + vtkDebugMacro(<< "Interpolator using array " << vecname); int numValidInputBlocks[2] = { 0, 0 }; int numTotalInputBlocks[2] = { 0, 0 }; this->DataReferenceT[0] = this->DataReferenceT[1] = nullptr; for (int T = 0; T < 2; T++) { this->CachedBounds[T].clear(); - int index = 0; // iterate over all blocks of input and cache the bounds information // and determine fixed/dynamic mesh status. - vtkSmartPointer anotherIterP; anotherIterP.TakeReference(this->CachedData[T]->NewIterator()); - anotherIterP->GoToFirstItem(); - while (!anotherIterP->IsDoneWithTraversal()) + for (anotherIterP->GoToFirstItem(); !anotherIterP->IsDoneWithTraversal(); + anotherIterP->GoToNextItem()) { numTotalInputBlocks[T]++; vtkDataSet* inp = vtkDataSet::SafeDownCast(anotherIterP->GetCurrentDataObject()); @@ -431,29 +465,19 @@ int vtkParticleTracerBase::InitializeInterpolator() } else { - // vtkDebugMacro("pass " << i << " Found dataset with " << inp->GetNumberOfCells() << " - // cells"); - // // store the bounding boxes of each local dataset for faster 'point-in-dataset' testing - // bounds bbox; - inp->ComputeBounds(); inp->GetBounds(&bbox.b[0]); this->CachedBounds[T].push_back(bbox); - bool static_dataset = (this->StaticMesh != 0); - this->AllFixedGeometry = this->AllFixedGeometry && static_dataset; // add the dataset to the interpolator - this->Interpolator->SetDataSetAtTime( - index++, T, this->GetCacheDataTime(T), inp, static_dataset); + this->Interpolator->AddDataSetAtTime(T, this->GetCacheDataTime(T), inp); if (!this->DataReferenceT[T]) { this->DataReferenceT[T] = inp; } - // numValidInputBlocks[T]++; } } - anotherIterP->GoToNextItem(); } } if (numValidInputBlocks[0] == 0 || numValidInputBlocks[1] == 0) @@ -462,26 +486,27 @@ int vtkParticleTracerBase::InitializeInterpolator() << numValidInputBlocks[0] << " " << numValidInputBlocks[1]); return VTK_ERROR; } - if (numValidInputBlocks[0] != numValidInputBlocks[1] && this->StaticMesh) + if (numValidInputBlocks[0] != numValidInputBlocks[1] && + this->MeshOverTime != MeshOverTimeTypes::DIFFERENT) { vtkErrorMacro( - "StaticMesh is set to True but the number of datasets is different between time steps " + "MeshOverTime is set to STATIC/LINEAR_INTERPOLATION/SAME_TOPOLOGY but the number of " + "datasets is different between time steps " << numValidInputBlocks[0] << " " << numValidInputBlocks[1]); - return VTK_ERROR; } - // vtkDebugMacro("Number of Valid input blocks is " << numValidInputBlocks[0] << " from " << numTotalInputBlocks[0]); vtkDebugMacro("AllFixedGeometry " << this->AllFixedGeometry); // force optimizations if StaticMesh is set. - if (this->StaticMesh) + this->AllFixedGeometry = this->MeshOverTime == MeshOverTimeTypes::STATIC; + if (this->MeshOverTime == MeshOverTimeTypes::STATIC) { vtkDebugMacro("Static Mesh optimizations Forced ON"); - this->AllFixedGeometry = 1; } - // + this->Interpolator->Initialize(this->CachedData[0], this->CachedData[1]); + return VTK_OK; } @@ -618,7 +643,7 @@ void vtkParticleTracerBase::TestParticles( // since this is first test, avoid bad cache tests this->Interpolator->ClearCache(); info.LocationState = this->Interpolator->TestPoint(pos); - if (info.LocationState == ID_OUTSIDE_ALL /*|| location==ID_OUTSIDE_T0*/) + if (info.LocationState == IDStates::OUTSIDE_ALL /*|| location==IDStates::OUTSIDE_T0*/) { // can't really use this particle. vtkDebugMacro(<< "TestParticles rejected particle"); @@ -1184,7 +1209,7 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c // the integrator were ok, but the final step may just pass out) // if it moves out, we can't interpolate scalars, so we must send it away info.LocationState = this->Interpolator->TestPoint(info.CurrentPosition.x); - if (info.LocationState == ID_OUTSIDE_ALL) + if (info.LocationState == IDStates::OUTSIDE_ALL) { info.ErrorCode = 2; // if the particle is sent, remove it from the list @@ -1252,9 +1277,27 @@ void vtkParticleTracerBase::PrintSelf(ostream& os, vtkIndent indent) os << indent << "ForceReinjectionEveryNSteps: " << this->ForceReinjectionEveryNSteps << endl; os << indent << "EnableParticleWriting: " << this->EnableParticleWriting << endl; os << indent << "IgnorePipelineTime: " << this->IgnorePipelineTime << endl; - os << indent << "StaticMesh: " << this->StaticMesh << endl; - os << indent << "TerminationTime: " << this->TerminationTime << endl; os << indent << "StaticSeeds: " << this->StaticSeeds << endl; + os << indent << "MeshOverTime: "; + switch (this->MeshOverTime) + { + case MeshOverTimeTypes::DIFFERENT: + os << "DIFFERENT" << endl; + break; + case MeshOverTimeTypes::STATIC: + os << "STATIC" << endl; + break; + case MeshOverTimeTypes::LINEAR_TRANSFORMATION: + os << "LINEAR_TRANSFORMATION" << endl; + break; + case MeshOverTimeTypes::SAME_TOPOLOGY: + os << "SAME_TOPOLOGY" << endl; + break; + default: + os << "UNKNOWN" << endl; + break; + } + os << indent << "TerminationTime: " << this->TerminationTime << endl; } //------------------------------------------------------------------------------ @@ -1458,7 +1501,7 @@ bool vtkParticleTracerBase::RetryWithPush( info.LocationState = this->Interpolator->TestPoint(point1); - if (info.LocationState == ID_OUTSIDE_ALL) + if (info.LocationState == IDStates::OUTSIDE_ALL) { // something is wrong, the particle has left the building completely // we can't get the last good velocity as it won't be valid @@ -1473,13 +1516,13 @@ bool vtkParticleTracerBase::RetryWithPush( } info.ErrorCode = 3; } - else if (info.LocationState == ID_OUTSIDE_T0) + else if (info.LocationState == IDStates::OUTSIDE_T0) { // the particle left the volume but can be tested at T2, so use the velocity at T2 this->Interpolator->GetLastGoodVelocity(velocity); info.ErrorCode = 4; } - else if (info.LocationState == ID_OUTSIDE_T1) + else if (info.LocationState == IDStates::OUTSIDE_T1) { // the particle left the volume but can be tested at T1, so use the velocity at T1 this->Interpolator->GetLastGoodVelocity(velocity); @@ -1502,7 +1545,7 @@ bool vtkParticleTracerBase::RetryWithPush( info.age += delT; info.SimulationTime += delT; // = this->GetCurrentTimeValue(); - if (info.LocationState != ID_OUTSIDE_ALL) + if (info.LocationState != IDStates::OUTSIDE_ALL) { // a push helped the particle get back into a dataset, info.ErrorCode = 6; @@ -1537,7 +1580,7 @@ void vtkParticleTracerBase::AddParticle( // between T0 and T1, just fetch the values // of the spatially interpolated scalars from T1. // - if (info.LocationState == ID_OUTSIDE_T1) + if (info.LocationState == IDStates::OUTSIDE_T1) { this->Interpolator->InterpolatePoint(0, this->OutputPointData, tempId); } @@ -1554,7 +1597,7 @@ void vtkParticleTracerBase::AddParticle( double pcoords[3], vorticity[3], weights[VTK_MAXIMUM_NUMBER_OF_POINTS]; double rotation, omega; // have to use T0 if particle is out at T1, otherwise use T1 - if (info.LocationState == ID_OUTSIDE_T1) + if (info.LocationState == IDStates::OUTSIDE_T1) { this->Interpolator->GetVorticityData(0, pcoords, weights, cell, this->CellVectors); } diff --git a/Filters/FlowPaths/vtkParticleTracerBase.h b/Filters/FlowPaths/vtkParticleTracerBase.h index 8befee8ffa62..94dfc1b53feb 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.h +++ b/Filters/FlowPaths/vtkParticleTracerBase.h @@ -28,14 +28,14 @@ #ifndef vtkParticleTracerBase_h #define vtkParticleTracerBase_h +#include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 #include "vtkFiltersFlowPathsModule.h" // For export macro #include "vtkPolyDataAlgorithm.h" -#include "vtkSmartPointer.h" // For protected ivars. +#include "vtkSmartPointer.h" // For vtkSmartPointer #include // STL Header #include // STL Header -class vtkAbstractInterpolatedVelocityField; class vtkAbstractParticleWriter; class vtkCellArray; class vtkCompositeDataSet; @@ -84,7 +84,7 @@ struct ParticleInformation_t float angularVel; float time; float speed; - // once the partice is added, PointId is valid and is the tuple location + // once the particle is added, PointId is valid and is the tuple location // in ProtoPD. vtkIdType PointId; // if PointId is negative then in parallel this particle was just @@ -206,6 +206,34 @@ public: vtkGetMacro(StaticSeeds, vtkTypeBool); ///@} + /** + * Types of Variance of Mesh over time + */ + enum MeshOverTimeTypes + { + DIFFERENT = 0, + STATIC = 1, + LINEAR_TRANSFORMATION = 2, + SAME_TOPOLOGY = 3 + }; + + ///@{ + /* + * Set/Get the type of variance of the mesh over time. + * + * DIFFERENT = 0, + * STATIC = 1, + * LINEAR_TRANSFORMATION = 2 + * SAME_TOPOLOGY = 3 + */ + vtkSetClampMacro(MeshOverTime, int, DIFFERENT, LINEAR_TRANSFORMATION); + void SetMeshOverTimeToDifferent() { this->SetMeshOverTime(DIFFERENT); } + void SetMeshOverTimeToStatic() { this->SetMeshOverTime(STATIC); } + void SetMeshOverTimeToLinearTransformation() { this->SetMeshOverTime(LINEAR_TRANSFORMATION); } + void SetMeshOverTimeToSameTopology() { this->SetMeshOverTime(SAME_TOPOLOGY); } + vtkGetMacro(MeshOverTime, int); + ///@} + ///@{ /** * if StaticMesh is set, many optimizations for cell caching @@ -216,10 +244,51 @@ public: * as this will invalidate all results. * The default is that StaticMesh is 0. */ - vtkSetMacro(StaticMesh, vtkTypeBool); - vtkGetMacro(StaticMesh, vtkTypeBool); + VTK_DEPRECATED_IN_9_2_0("Use SetMeshOverTime instead") + virtual void SetStaticMesh(vtkTypeBool staticMesh) + { + this->SetMeshOverTime(staticMesh ? STATIC : DIFFERENT); + } + VTK_DEPRECATED_IN_9_2_0("Use GetMeshOverTime instead") + virtual vtkTypeBool GetStaticMesh() { return this->MeshOverTime == STATIC; } ///@} + enum + { + INTERPOLATOR_WITH_DATASET_POINT_LOCATOR, + INTERPOLATOR_WITH_CELL_LOCATOR + }; + + /** + * Set the type of the velocity field interpolator to determine whether + * INTERPOLATOR_WITH_DATASET_POINT_LOCATOR or INTERPOLATOR_WITH_CELL_LOCATOR + * is employed for locating cells during streamline integration. The latter + * (adopting vtkAbstractCellLocator sub-classes such as vtkCellLocator and + * vtkModifiedBSPTree) is more robust than the former (through vtkDataSet / + * vtkPointSet::FindCell() coupled with vtkPointLocator). However the former + * can be much faster and produce adequate results. + * + * Default is INTERPOLATOR_WITH_CELL_LOCATOR (to maintain backwards compatibility). + */ + void SetInterpolatorType(int interpolatorType); + + /** + * Set the velocity field interpolator type to one that uses a point + * locator to perform local spatial searching. Typically a point locator is + * faster than searches with a cell locator, but it may not always find the + * correct cells enclosing a point. This is particularly true with meshes + * that are disjoint at seams, or abut meshes in an incompatible manner. + */ + void SetInterpolatorTypeToDataSetPointLocator(); + + /** + * Set the velocity field interpolator type to one that uses a cell locator + * to perform spatial searching. Using a cell locator should always return + * the correct results, but it can be much slower that point locator-based + * searches. * By default a cell locator is used. + */ + void SetInterpolatorTypeToCellLocator(); + ///@{ /** * Set/Get the Writer associated with this Particle Tracer @@ -344,9 +413,7 @@ protected: */ virtual std::vector GetSeedSources(vtkInformationVector* inputVector, int timeStep); - // // Initialization of input (vector-field) geometry - // int InitializeInterpolator(); int UpdateDataCache(vtkDataObject* td); @@ -471,11 +538,6 @@ protected: virtual void AddRestartSeeds(vtkInformationVector** /*inputVector*/) {} private: - /** - * Hide this because we require a new interpolator type - */ - void SetInterpolatorPrototype(vtkAbstractInterpolatedVelocityField*) {} - /** * When particles leave the domain, they must be collected * and sent to the other processes for possible continuation. @@ -503,7 +565,7 @@ private: // Important for Caching of Cells/Ids/Weights etc vtkTypeBool AllFixedGeometry; - vtkTypeBool StaticMesh; + int MeshOverTime; vtkTypeBool StaticSeeds; std::vector InputTimeValues; diff --git a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.cxx index 5ac119e00afb..b6e43b55f5d0 100644 --- a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.cxx @@ -14,31 +14,48 @@ =========================================================================*/ #include "vtkTemporalInterpolatedVelocityField.h" -#include "vtkAbstractCellLocator.h" -#include "vtkCachingInterpolatedVelocityField.h" +#include "vtkAbstractCellLinks.h" +#include "vtkCellLocatorStrategy.h" +#include "vtkClosestPointStrategy.h" +#include "vtkCompositeDataSet.h" +#include "vtkCompositeInterpolatedVelocityField.h" #include "vtkDataArray.h" #include "vtkDataSet.h" #include "vtkDoubleArray.h" +#include "vtkFindCellStrategy.h" #include "vtkGenericCell.h" +#include "vtkLinearTransformCellLocator.h" #include "vtkObjectFactory.h" #include "vtkPointData.h" +#include "vtkPointSet.h" +#include "vtkPolyData.h" +#include "vtkStaticCellLocator.h" +#include "vtkStaticPointLocator.h" +#include "vtkUnstructuredGrid.h" -#include //------------------------------------------------------------------------------ vtkStandardNewMacro(vtkTemporalInterpolatedVelocityField); + +//------------------------------------------------------------------------------ +vtkCxxSetObjectMacro(vtkTemporalInterpolatedVelocityField, FindCellStrategy, vtkFindCellStrategy); + +//------------------------------------------------------------------------------ +const double vtkTemporalInterpolatedVelocityField::WEIGHT_TO_TOLERANCE = 1E-3; + //------------------------------------------------------------------------------ vtkTemporalInterpolatedVelocityField::vtkTemporalInterpolatedVelocityField() { this->NumFuncs = 3; // u, v, w this->NumIndepVars = 4; // x, y, z, t - this->IVF[0] = vtkSmartPointer::New(); - this->IVF[1] = vtkSmartPointer::New(); + this->IVF[0] = vtkSmartPointer::New(); + this->IVF[1] = vtkSmartPointer::New(); this->LastGoodVelocity[0] = 0.0; this->LastGoodVelocity[1] = 0.0; this->LastGoodVelocity[2] = 0.0; this->CurrentWeight = 0.0; this->OneMinusWeight = 1.0; this->ScaleCoeff = 1.0; + this->FindCellStrategy = nullptr; this->Vals1[0] = this->Vals1[1] = this->Vals1[2] = 0.0; this->Vals2[0] = this->Vals2[1] = this->Vals2[2] = 0.0; @@ -51,186 +68,466 @@ vtkTemporalInterpolatedVelocityField::~vtkTemporalInterpolatedVelocityField() this->NumFuncs = 0; this->NumIndepVars = 0; this->SetVectorsSelection(nullptr); + this->SetFindCellStrategy(nullptr); this->IVF[0] = nullptr; this->IVF[1] = nullptr; } + //------------------------------------------------------------------------------ -void vtkTemporalInterpolatedVelocityField::SetDataSetAtTime( - int I, int N, double T, vtkDataSet* dataset, bool staticdataset) +void vtkTemporalInterpolatedVelocityField::AddDataSetAtTime(int N, double T, vtkDataSet* dataset) { + if (N != 0 && N != 1) + { + vtkErrorMacro("Invalid time step index " << N); + return; + } this->Times[N] = T; if ((this->Times[1] - this->Times[0]) > 0) { this->ScaleCoeff = 1.0 / (this->Times[1] - this->Times[0]); } - if (N == 0) + if (this->MeshOverTime == MeshOverTimeTypes::DIFFERENT) { - this->IVF[N]->SetDataSet(I, dataset, staticdataset, nullptr); + this->IVF[N]->AddDataSet(dataset); } - // when the datasets for the second time set are added, set the static flag - if (N == 1) + else { - bool is_static = staticdataset && this->IVF[0]->CacheList[I].StaticDataSet; - if (static_cast(I) >= this->StaticDataSets.size()) + // equality will be true only when we build the first time step + if (this->MaxCellSizes[N].size() == this->IVF[N]->DataSetsBoundsInfo.size()) { - this->StaticDataSets.resize(I + 1, is_static); + size_t maxCellSize = static_cast(dataset->GetMaxCellSize()); + this->MaxCellSizes[N].push_back(maxCellSize); + this->IVF[N]->AddDataSet(dataset, maxCellSize); } - if (is_static) + else { - this->IVF[N]->SetDataSet(I, dataset, staticdataset, this->IVF[0]->CacheList[I].BSPTree); + size_t maxCellSize = + static_cast(this->MaxCellSizes[N][this->IVF[N]->DataSetsBoundsInfo.size()]); + this->IVF[N]->AddDataSet(dataset, maxCellSize); + } + } +} + +//------------------------------------------------------------------------------ +void vtkTemporalInterpolatedVelocityField::SetVectorsSelection(const char* v) +{ + this->IVF[0]->SelectVectors(vtkDataObject::POINT, v); + this->IVF[1]->SelectVectors(vtkDataObject::POINT, v); +} + +//------------------------------------------------------------------------------ +void vtkTemporalInterpolatedVelocityField::CreateLocators(const std::vector& datasets, + vtkFindCellStrategy* strategy, std::vector>& locators) +{ + locators.clear(); + locators.reserve(datasets.size()); + for (const auto& dataset : datasets) + { + if (vtkPointSet::SafeDownCast(dataset)) + { + if (vtkCellLocatorStrategy::SafeDownCast(strategy)) + { + auto cellLocator = vtkSmartPointer::New(); + cellLocator->SetDataSet(dataset); + cellLocator->CacheCellBoundsOn(); + cellLocator->SetUseExistingSearchStructure( + this->MeshOverTime != MeshOverTimeTypes::DIFFERENT); + cellLocator->BuildLocator(); + locators.emplace_back(cellLocator); + } + else // vtkClosestPointStrategy + { + auto pointLocator = vtkSmartPointer::New(); + pointLocator->SetDataSet(dataset); + pointLocator->SetUseExistingSearchStructure( + this->MeshOverTime != MeshOverTimeTypes::DIFFERENT); + pointLocator->BuildLocator(); + locators.emplace_back(pointLocator); + } } else { - this->IVF[N]->SetDataSet(I, dataset, staticdataset, nullptr); + locators.emplace_back(nullptr); } } } + //------------------------------------------------------------------------------ -bool vtkTemporalInterpolatedVelocityField::IsStatic(int datasetIndex) +void vtkTemporalInterpolatedVelocityField::CreateLinks(const std::vector& datasets, + std::vector>& datasetLinks) { - return this->StaticDataSets[datasetIndex]; + datasetLinks.clear(); + datasetLinks.reserve(datasets.size()); + for (const auto& dataset : datasets) + { + if (vtkPointSet::SafeDownCast(dataset)) + { + if (auto ugrid = vtkUnstructuredGrid::SafeDownCast(dataset)) + { + ugrid->BuildLinks(); + datasetLinks.emplace_back(ugrid->GetLinks()); + } + else if (auto polyData = vtkPolyData::SafeDownCast(dataset)) + { + polyData->BuildLinks(); + datasetLinks.emplace_back(polyData->GetLinks()); + } + } + else + { + datasetLinks.emplace_back(nullptr); + } + } } + //------------------------------------------------------------------------------ -void vtkTemporalInterpolatedVelocityField::SetVectorsSelection(const char* v) +void vtkTemporalInterpolatedVelocityField::CreateLinearTransformCellLocators( + const std::vector>& locators, + std::vector>& linearCellLocators) { - this->IVF[0]->SelectVectors(v); - this->IVF[1]->SelectVectors(v); + linearCellLocators.clear(); + linearCellLocators.reserve(locators.size()); + for (const auto& locator : locators) + { + if (auto cellLocator = vtkAbstractCellLocator::SafeDownCast(locator)) + { + auto linearTransformCellLocator = vtkSmartPointer::New(); + linearTransformCellLocator->SetCellLocator(cellLocator); + linearCellLocators.emplace_back(linearTransformCellLocator); + } + else + { + linearCellLocators.emplace_back(nullptr); + } + } } + +//------------------------------------------------------------------------------ +void vtkTemporalInterpolatedVelocityField::InitializeWithLocators( + vtkCompositeInterpolatedVelocityField* ivf, const std::vector& datasets, + vtkFindCellStrategy* strategy, const std::vector>& locators, + const std::vector>& datasetLinks) +{ + // Clear the datasets info, subclasses may want to put stuff into it. + ivf->DataSetsInfo.clear(); + + // Proceed to initialize the composite dataset + ivf->InitializationState = vtkCompositeInterpolatedVelocityField::INITIALIZE_ALL_DATASETS; + + // For each dataset in the list of datasets, make sure a FindCell + // strategy has been defined and initialized. The potential for composite + // datasets which may contain instances of (vtkPointSet) make the process + // more complex. We only care about find cell strategies if the dataset is + // a vtkPointSet because the other dataset types (e.g., volumes) have their + // own built-in FindCell() methods. + vtkDataArray* vectors; + vtkFindCellStrategy* strategyClone; + for (size_t i = 0; i < datasets.size(); ++i) + { + auto& dataset = datasets[i]; + if (!ivf->VectorsSelection) // if a selection is not specified, + { + // use the first one in the point set (this is a behavior for backward compatibility) + vectors = dataset->GetPointData()->GetVectors(nullptr); + } + else + { + vectors = + dataset->GetAttributesAsFieldData(ivf->VectorsType)->GetArray(ivf->VectorsSelection); + } + + strategyClone = nullptr; + if (vtkPointSet::SafeDownCast(dataset)) + { + strategyClone = strategy->NewInstance(); + } + ivf->AddToDataSetsInfo(dataset, strategyClone, vectors); + } // for all datasets of composite dataset + + // Now initialize the new strategies + for (size_t i = 0; i < datasets.size(); ++i) + { + auto& datasetInfo = ivf->DataSetsInfo[i]; + if (auto pointSet = vtkPointSet::SafeDownCast(datasetInfo.DataSet)) + { + if (auto cellLocatorStrategy = vtkCellLocatorStrategy::SafeDownCast(datasetInfo.Strategy)) + { + cellLocatorStrategy->SetCellLocator(vtkAbstractCellLocator::SafeDownCast(locators[i])); + } + else // vtkClosestPointStrategy + { + auto pointLocatorStrategy = vtkClosestPointStrategy::SafeDownCast(datasetInfo.Strategy); + pointLocatorStrategy->SetPointLocator(vtkAbstractPointLocator::SafeDownCast(locators[i])); + } + datasetInfo.Strategy->Initialize(pointSet); + } + } + // Now perform initialization on certain data sets + for (size_t i = 0; i < datasets.size(); ++i) + { + auto& datasetInfo = ivf->DataSetsInfo[i]; + datasetInfo.DataSet->ComputeBounds(); + if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) + { + polyData->BuildCells(); + } + if (vtkClosestPointStrategy::SafeDownCast(datasetInfo.Strategy)) + { + if (auto ugrid = vtkUnstructuredGrid::SafeDownCast(datasetInfo.DataSet)) + { + ugrid->SetLinks(datasetLinks[i]); + } + else if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) + { + polyData->SetLinks(vtkCellLinks::SafeDownCast(datasetLinks[i])); + } + } + } +} + +//------------------------------------------------------------------------------ +void vtkTemporalInterpolatedVelocityField::Initialize( + vtkCompositeDataSet* t0, vtkCompositeDataSet* t1) +{ + vtkSmartPointer strategy = this->FindCellStrategy; + if (strategy == nullptr) + { + strategy = vtkSmartPointer::New(); // default strategy if not provided + } + + std::vector datasets[2]; + datasets[1] = std::move(vtkCompositeDataSet::GetDataSets(t1)); + if (t0 == t1) // First time calling this method + { + if (vtkClosestPointStrategy::SafeDownCast(strategy)) + { + this->CreateLinks(datasets[1], this->Links[1]); + } + // create one set of locators + this->CreateLocators(datasets[1], strategy, this->Locators[1]); + this->InitializeWithLocators( + this->IVF[0], datasets[1], strategy, this->Locators[1], this->Links[1]); + this->InitializeWithLocators( + this->IVF[1], datasets[1], strategy, this->Locators[1], this->Links[1]); + if (this->MeshOverTime == MeshOverTimeTypes::LINEAR_TRANSFORMATION && + vtkCellLocatorStrategy::SafeDownCast(strategy)) + { + // save initial cell locators + this->InitialCellLocators = std::move(this->Locators[1]); + this->CreateLinearTransformCellLocators(this->InitialCellLocators, this->Locators[1]); + } + } + else // t0 != t1 + { + datasets[0] = std::move(vtkCompositeDataSet::GetDataSets(t0)); + switch (this->MeshOverTime) + { + case MeshOverTimeTypes::DIFFERENT: + if (vtkClosestPointStrategy::SafeDownCast(strategy)) + { + this->Links[0] = std::move(this->Links[1]); + this->CreateLinks(datasets[1], this->Links[1]); + } + this->Locators[0] = std::move(this->Locators[1]); + this->InitializeWithLocators( + this->IVF[0], datasets[0], strategy, this->Locators[0], this->Links[0]); + this->CreateLocators(datasets[1], strategy, this->Locators[1]); + this->InitializeWithLocators( + this->IVF[1], datasets[1], strategy, this->Locators[1], this->Links[1]); + break; + case MeshOverTimeTypes::STATIC: + this->InitializeWithLocators( + this->IVF[0], datasets[0], strategy, this->Locators[1], this->Links[1]); + this->InitializeWithLocators( + this->IVF[1], datasets[1], strategy, this->Locators[1], this->Links[1]); + break; + case MeshOverTimeTypes::LINEAR_TRANSFORMATION: + this->Locators[0] = std::move(this->Locators[1]); + this->InitializeWithLocators( + this->IVF[0], datasets[0], strategy, this->Locators[0], this->Links[1]); + if (vtkCellLocatorStrategy::SafeDownCast(strategy)) + { + // Cell Locators support MeshOverTimeTypes::LINEAR_TRANSFORMATION + this->CreateLinearTransformCellLocators(this->InitialCellLocators, this->Locators[1]); + } + else // vtkClosestPointStrategy + { + // PointLocators don't support MeshOverTimeTypes::LINEAR_TRANSFORMATION + this->CreateLocators(datasets[1], strategy, this->Locators[1]); + } + this->InitializeWithLocators( + this->IVF[1], datasets[1], strategy, this->Locators[1], this->Links[1]); + break; + case MeshOverTimeTypes::SAME_TOPOLOGY: + // point locators can preserve the same links since the topology is the same + this->Locators[0] = std::move(this->Locators[1]); + this->InitializeWithLocators( + this->IVF[0], datasets[0], strategy, this->Locators[0], this->Links[1]); + this->CreateLocators(datasets[1], strategy, this->Locators[1]); + this->InitializeWithLocators( + this->IVF[1], datasets[1], strategy, this->Locators[1], this->Links[1]); + break; + default: + vtkErrorMacro("MeshOverTime type not supported."); + } + } +} + +//------------------------------------------------------------------------------ +void vtkTemporalInterpolatedVelocityField::CopyParameters( + vtkTemporalInterpolatedVelocityField* from) +{ + this->MeshOverTime = from->MeshOverTime; + this->SetFindCellStrategy(from->FindCellStrategy); + this->IVF[0]->CopyParameters(from->IVF[0]); + this->IVF[1]->CopyParameters(from->IVF[1]); + this->Locators[0] = from->Locators[0]; + this->Locators[1] = from->Locators[1]; + this->InitialCellLocators = from->InitialCellLocators; + this->Links[0] = from->Links[0]; + this->Links[1] = from->Links[1]; + this->MaxCellSizes[0] = from->MaxCellSizes[0]; + this->MaxCellSizes[1] = from->MaxCellSizes[1]; + std::copy_n(from->Times, 2, this->Times); + this->ScaleCoeff = from->ScaleCoeff; +} + //------------------------------------------------------------------------------ void vtkTemporalInterpolatedVelocityField::ClearCache() { - this->IVF[0]->SetLastCellInfo(-1, 0); - this->IVF[1]->SetLastCellInfo(-1, 0); + this->IVF[0]->SetLastCellId(-1, 0); + this->IVF[1]->SetLastCellId(-1, 0); } + //------------------------------------------------------------------------------ void vtkTemporalInterpolatedVelocityField::SetCachedCellIds(vtkIdType id[2], int ds[2]) { if (id[0] != -1) { - this->IVF[0]->SetLastCellInfo(id[0], ds[0]); + this->IVF[0]->SetLastCellId(id[0], ds[0]); } else { - this->IVF[0]->SetLastCellInfo(-1, 0); + this->IVF[0]->SetLastCellId(-1, 0); } - // + if (id[1] != -1) { - this->IVF[1]->SetLastCellInfo(id[1], ds[1]); + this->IVF[1]->SetLastCellId(id[1], ds[1]); } else { - this->IVF[1]->SetLastCellInfo(-1, 0); + this->IVF[1]->SetLastCellId(-1, 0); } } + //------------------------------------------------------------------------------ bool vtkTemporalInterpolatedVelocityField::GetCachedCellIds(vtkIdType id[2], int ds[2]) { id[0] = this->IVF[0]->LastCellId; - ds[0] = (id[0] == -1) ? 0 : this->IVF[0]->LastCacheIndex; - // + ds[0] = (id[0] == -1) ? 0 : this->IVF[0]->LastDataSetIndex; + id[1] = this->IVF[1]->LastCellId; - ds[1] = (id[1] == -1) ? 0 : this->IVF[1]->LastCacheIndex; + ds[1] = (id[1] == -1) ? 0 : this->IVF[1]->LastDataSetIndex; return ((id[0] >= 0) && (id[1] >= 0)); } + //------------------------------------------------------------------------------ void vtkTemporalInterpolatedVelocityField::AdvanceOneTimeStep() { - for (unsigned int i = 0; i < this->IVF[0]->CacheList.size(); i++) - { - if (this->IsStatic(i)) - { - this->IVF[0]->ClearLastCellInfo(); - this->IVF[1]->ClearLastCellInfo(); - } - else - { - this->IVF[0] = this->IVF[1]; - this->IVF[1] = vtkSmartPointer::New(); - } - } + this->IVF[0] = vtkSmartPointer::New(); + this->IVF[1] = vtkSmartPointer::New(); } + //------------------------------------------------------------------------------ void vtkTemporalInterpolatedVelocityField::ShowCacheResults() { vtkErrorMacro(<< ")\n" - << "T0 - (cell hit : " << this->IVF[0]->CellCacheHit - << " (dataset hit : " << this->IVF[0]->DataSetCacheHit - this->IVF[0]->CellCacheHit - << " (miss : " << this->IVF[0]->CacheMiss << ")\n" - << "T1 - (cell hit : " << this->IVF[1]->CellCacheHit - << " (dataset hit : " << this->IVF[1]->DataSetCacheHit - this->IVF[1]->CellCacheHit - << " (miss : " << this->IVF[1]->CacheMiss); + << "T0 - (cell hit : " << this->IVF[0]->CacheHit << ")\n" + << " (cell miss : " << this->IVF[0]->CacheMiss << ")\n" + << " (dataset hit : " << this->IVF[0]->CacheDataSetHit << ")\n" + << " (dataset miss : " << this->IVF[0]->CacheDataSetMiss << ")\n" + << "T1 - (cell hit : " << this->IVF[1]->CacheHit << ")\n" + << " (cell miss : " << this->IVF[1]->CacheMiss << ")\n" + << " (dataset hit : " << this->IVF[1]->CacheDataSetHit << ")\n" + << " (dataset miss : " << this->IVF[1]->CacheDataSetMiss << ")\n"); } + //------------------------------------------------------------------------------ -static double vtkTIVFWeightTolerance = 1E-3; // Evaluate u,v,w at x,y,z,t int vtkTemporalInterpolatedVelocityField::TestPoint(double* x) { this->CurrentWeight = (x[3] - this->Times[0]) * this->ScaleCoeff; this->OneMinusWeight = 1.0 - this->CurrentWeight; - if (this->CurrentWeight < (0.0 + vtkTIVFWeightTolerance)) + if (this->CurrentWeight < (0.0 + vtkTemporalInterpolatedVelocityField::WEIGHT_TO_TOLERANCE)) { this->CurrentWeight = 0.0; } - if (this->CurrentWeight > (1.0 - vtkTIVFWeightTolerance)) + if (this->CurrentWeight > (1.0 - vtkTemporalInterpolatedVelocityField::WEIGHT_TO_TOLERANCE)) { this->CurrentWeight = 1.0; } - // // are we inside dataset at T0 - // if (this->IVF[0]->FunctionValues(x, this->Vals1)) { // if we are inside at T0 and static, we must be inside at T1 - if (this->IsStatic(this->IVF[0]->LastCacheIndex)) + if (this->MeshOverTime == MeshOverTimeTypes::STATIC) { // compute using weights from dataset 0 and vectors from dataset 1 - this->IVF[1]->SetLastCellInfo(this->IVF[0]->LastCellId, this->IVF[0]->LastCacheIndex); - this->IVF[0]->FastCompute(this->IVF[1]->Cache, this->Vals2); + this->IVF[1]->SetLastCellId(this->IVF[0]->LastCellId, this->IVF[0]->LastDataSetIndex); + auto datasetInfo = this->IVF[1]->GetDataSetInfo(this->IVF[1]->LastDataSet); + this->IVF[0]->FastCompute(this->IVF[1], datasetInfo->Vectors, this->Vals2); for (int i = 0; i < this->NumFuncs; i++) { this->LastGoodVelocity[i] = this->OneMinusWeight * this->Vals1[i] + this->CurrentWeight * this->Vals2[i]; } - return ID_INSIDE_ALL; + return IDStates::INSIDE_ALL; } - // dynamic, we need to test at T1 - if (!this->IVF[1]->FunctionValues(x, this->Vals2)) + else { - // inside at T0, but outside at T1, return velocity for T0 + // dynamic, we need to test at T1 + if (!this->IVF[1]->FunctionValues(x, this->Vals2)) + { + // inside at T0, but outside at T1, return velocity for T0 + for (int i = 0; i < this->NumFuncs; i++) + { + this->LastGoodVelocity[i] = this->Vals1[i]; + } + return IDStates::OUTSIDE_T1; + } + // both valid, compute correct value for (int i = 0; i < this->NumFuncs; i++) { - this->LastGoodVelocity[i] = this->Vals1[i]; + this->LastGoodVelocity[i] = + this->OneMinusWeight * this->Vals1[i] + this->CurrentWeight * this->Vals2[i]; } - return ID_OUTSIDE_T1; + return IDStates::INSIDE_ALL; } - // both valid, compute correct value - for (int i = 0; i < this->NumFuncs; i++) - { - this->LastGoodVelocity[i] = - this->OneMinusWeight * this->Vals1[i] + this->CurrentWeight * this->Vals2[i]; - } - return ID_INSIDE_ALL; } // Outside at T0, either abort or use T1 // if we are outside at T0 and static, we must be outside at T1 - if (this->IsStatic(this->IVF[0]->LastCacheIndex)) + if (this->MeshOverTime == MeshOverTimeTypes::STATIC) { - return ID_OUTSIDE_ALL; + return IDStates::OUTSIDE_ALL; } - // we are dynamic, so test T1 - if (this->IVF[1]->FunctionValues(x, this->Vals2)) + else { - // inside at T1, but outside at T0, return velocity for T1 - for (int i = 0; i < this->NumFuncs; i++) + // we are dynamic, so test T1 + if (this->IVF[1]->FunctionValues(x, this->Vals2)) { - this->LastGoodVelocity[i] = this->Vals2[i]; + // inside at T1, but outside at T0, return velocity for T1 + for (int i = 0; i < this->NumFuncs; i++) + { + this->LastGoodVelocity[i] = this->Vals2[i]; + } + return IDStates::OUTSIDE_T0; } - return ID_OUTSIDE_T0; + // failed both, so exit + return IDStates::OUTSIDE_ALL; } - // failed both, so exit - return ID_OUTSIDE_ALL; } + //------------------------------------------------------------------------------ // Evaluate u,v,w at x,y,z,t int vtkTemporalInterpolatedVelocityField::QuickTestPoint(double* x) @@ -241,7 +538,7 @@ int vtkTemporalInterpolatedVelocityField::QuickTestPoint(double* x) return 0; } // if inside and static dataset hit, skip next test - if (!this->IsStatic(this->IVF[0]->LastCacheIndex)) + if (this->MeshOverTime != MeshOverTimeTypes::STATIC) { if (!this->IVF[1]->InsideTest(x)) { @@ -250,11 +547,12 @@ int vtkTemporalInterpolatedVelocityField::QuickTestPoint(double* x) } return 1; } + //------------------------------------------------------------------------------ // Evaluate u,v,w at x,y,z,t int vtkTemporalInterpolatedVelocityField::FunctionValues(double* x, double* u) { - if (this->TestPoint(x) == ID_OUTSIDE_ALL) + if (this->TestPoint(x) == IDStates::OUTSIDE_ALL) { return 0; } @@ -264,12 +562,11 @@ int vtkTemporalInterpolatedVelocityField::FunctionValues(double* x, double* u) } return 1; } + //------------------------------------------------------------------------------ int vtkTemporalInterpolatedVelocityField::FunctionValuesAtT(int T, double* x, double* u) { - // // Try velocity at T0 - // if (T == 0) { if (!this->IVF[0]->FunctionValues(x, this->Vals1)) @@ -280,14 +577,12 @@ int vtkTemporalInterpolatedVelocityField::FunctionValuesAtT(int T, double* x, do { this->LastGoodVelocity[i] = u[i] = this->Vals1[i]; } - if (this->IsStatic(this->IVF[0]->LastCacheIndex)) + if (this->MeshOverTime == MeshOverTimeTypes::STATIC) { - this->IVF[1]->SetLastCellInfo(this->IVF[0]->LastCellId, this->IVF[0]->LastCacheIndex); + this->IVF[1]->SetLastCellId(this->IVF[0]->LastCellId, this->IVF[0]->LastDataSetIndex); } } - // // Try velocity at T1 - // else if (T == 1) { if (!this->IVF[1]->FunctionValues(x, this->Vals2)) @@ -298,13 +593,14 @@ int vtkTemporalInterpolatedVelocityField::FunctionValuesAtT(int T, double* x, do { this->LastGoodVelocity[i] = u[i] = this->Vals2[i]; } - if (this->IsStatic(this->IVF[1]->LastCacheIndex)) + if (this->MeshOverTime == MeshOverTimeTypes::STATIC) { - this->IVF[0]->SetLastCellInfo(this->IVF[1]->LastCellId, this->IVF[1]->LastCacheIndex); + this->IVF[0]->SetLastCellId(this->IVF[1]->LastCellId, this->IVF[1]->LastDataSetIndex); } } return 1; } + //------------------------------------------------------------------------------ bool vtkTemporalInterpolatedVelocityField::InterpolatePoint( vtkPointData* outPD1, vtkPointData* outPD2, vtkIdType outIndex) @@ -313,33 +609,33 @@ bool vtkTemporalInterpolatedVelocityField::InterpolatePoint( bool ok2 = this->IVF[1]->InterpolatePoint(outPD2, outIndex); return (ok1 || ok2); } + //------------------------------------------------------------------------------ bool vtkTemporalInterpolatedVelocityField::InterpolatePoint( int T, vtkPointData* outPD1, vtkIdType outIndex) { - vtkCachingInterpolatedVelocityField* inivf = this->IVF[T]; + vtkCompositeInterpolatedVelocityField* inivf = this->IVF[T]; // force use of correct weights/etc if static as only T0 are valid - if (T == 1 && this->IsStatic(this->IVF[T]->LastCacheIndex)) + if (T == 1 && this->MeshOverTime == MeshOverTimeTypes::STATIC) { T = 0; } - // return this->IVF[T]->InterpolatePoint(inivf, outPD1, outIndex); } + //------------------------------------------------------------------------------ bool vtkTemporalInterpolatedVelocityField::GetVorticityData( int T, double pcoords[3], double* weights, vtkGenericCell*& cell, vtkDoubleArray* cellVectors) { // force use of correct weights/etc if static as only T0 are valid - if (T == 1 && this->IsStatic(this->IVF[T]->LastCacheIndex)) + if (T == 1 && this->MeshOverTime == MeshOverTimeTypes::STATIC) { T = 0; } - // if (this->IVF[T]->GetLastWeights(weights) && this->IVF[T]->GetLastLocalCoordinates(pcoords) && (cell = this->IVF[T]->GetLastCell())) { - vtkDataSet* ds = this->IVF[T]->Cache->DataSet; + vtkDataSet* ds = this->IVF[T]->LastDataSet; vtkPointData* pd = ds->GetPointData(); vtkDataArray* da = pd->GetVectors(this->IVF[T]->GetVectorsSelection()); da->GetTuples(cell->PointIds, cellVectors); @@ -347,6 +643,7 @@ bool vtkTemporalInterpolatedVelocityField::GetVorticityData( } return false; } + //------------------------------------------------------------------------------ void vtkTemporalInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent indent) { @@ -355,5 +652,32 @@ void vtkTemporalInterpolatedVelocityField::PrintSelf(ostream& os, vtkIndent inde os << indent << "LastGoodVelocity: " << this->LastGoodVelocity[0] << ", " << this->LastGoodVelocity[1] << ", " << this->LastGoodVelocity[2] << endl; os << indent << "CurrentWeight: " << this->CurrentWeight << endl; + os << indent << "MeshOverTime: "; + switch (this->MeshOverTime) + { + case MeshOverTimeTypes::DIFFERENT: + os << "DIFFERENT" << endl; + break; + case MeshOverTimeTypes::STATIC: + os << "STATIC" << endl; + break; + case MeshOverTimeTypes::LINEAR_TRANSFORMATION: + os << "LINEAR_TRANSFORMATION" << endl; + break; + case MeshOverTimeTypes::SAME_TOPOLOGY: + os << "SAME_TOPOLOGY" << endl; + break; + default: + os << "UNKNOWN" << endl; + break; + } + os << indent << "FindCellStrategy: "; + if (this->FindCellStrategy) + { + os << this->FindCellStrategy << endl; + } + else + { + os << "(none)" << endl; + } } -//------------------------------------------------------------------------------ diff --git a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h index 1859e1f6b532..d80f51899c98 100644 --- a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h @@ -14,13 +14,12 @@ =========================================================================*/ /** * @class vtkTemporalInterpolatedVelocityField - * @brief A helper class for - * interpolating between times during particle tracing + * @brief A helper class for interpolating between times during particle tracing * * vtkTemporalInterpolatedVelocityField is a general purpose * helper for the temporal particle tracing code (vtkParticleTracerBase) * - * It maintains two copies of vtkCachingInterpolatedVelocityField internally + * It maintains two copies of vtkCompositeInterpolatedVelocityField internally * and uses them to obtain velocity values at time T0 and T1. * * In fact the class does quite a bit more than this because when the geometry @@ -30,7 +29,7 @@ * values and computing vorticity etc. * * @warning - * vtkTemporalInterpolatedVelocityField is probably not thread safe. + * vtkTemporalInterpolatedVelocityField is not thread safe. * A new instance should be created by each thread. * * @warning @@ -41,30 +40,30 @@ * * * @sa - * vtkCachingInterpolatedVelocityField vtkParticleTracerBase + * vtkCompositeInterpolatedVelocityField vtkParticleTracerBase * vtkParticleTracer vtkParticlePathFilter vtkStreaklineFilter */ #ifndef vtkTemporalInterpolatedVelocityField_h #define vtkTemporalInterpolatedVelocityField_h +#include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 #include "vtkFiltersFlowPathsModule.h" // For export macro #include "vtkFunctionSet.h" #include "vtkSmartPointer.h" // because it is good #include // Because they are good -#define ID_INSIDE_ALL 00 -#define ID_OUTSIDE_ALL 01 -#define ID_OUTSIDE_T0 02 -#define ID_OUTSIDE_T1 03 - -class vtkDataSet; +class vtkAbstractCellLinks; +class vtkCompositeDataSet; +class vtkCompositeInterpolatedVelocityField; class vtkDataArray; -class vtkPointData; -class vtkGenericCell; +class vtkDataSet; class vtkDoubleArray; -class vtkCachingInterpolatedVelocityField; +class vtkFindCellStrategy; +class vtkGenericCell; +class vtkLocator; +class vtkPointData; class VTKFILTERSFLOWPATHS_EXPORT vtkTemporalInterpolatedVelocityField : public vtkFunctionSet { @@ -78,6 +77,62 @@ public: */ static vtkTemporalInterpolatedVelocityField* New(); + /** + * States that define where the cell id are + */ + enum IDStates + { + INSIDE_ALL = 0, + OUTSIDE_ALL = 1, + OUTSIDE_T0 = 2, + OUTSIDE_T1 = 3 + }; + + /** + * Types of Variance of Mesh over time + */ + enum MeshOverTimeTypes + { + DIFFERENT = 0, + STATIC = 1, + LINEAR_TRANSFORMATION = 2, + SAME_TOPOLOGY = 3 + }; + + ///@{ + /* + * Set/Get the type of variance of the mesh over time. + * + * DIFFERENT = 0, + * STATIC = 1, + * LINEAR_TRANSFORMATION = 2 + * SAME_TOPOLOGY = 3 + */ + vtkSetClampMacro(MeshOverTime, int, DIFFERENT, LINEAR_TRANSFORMATION); + void SetMeshOverTimeToDifferent() { this->SetMeshOverTime(DIFFERENT); } + void SetMeshOverTimeToStatic() { this->SetMeshOverTime(STATIC); } + void SetMeshOverTimeToLinearTransformation() { this->SetMeshOverTime(LINEAR_TRANSFORMATION); } + void SetMeshOverTimeToSameTopology() { this->SetMeshOverTime(SAME_TOPOLOGY); } + vtkGetMacro(MeshOverTime, int); + ///@} + + /** + * The Initialize() method is used to build and cache supporting structures + * (such as locators) which are used when operating on the interpolated + * velocity field. This method is needed mainly to deal with thread safety + * issues; i.e., these supporting structures must be built at the right + * time to avoid race conditions. + */ + void Initialize(vtkCompositeDataSet* t0, vtkCompositeDataSet* t1); + + /** + * Copy essential parameters between instances of this class. This + * generally is used to copy from instance prototype to another, or to copy + * interpolators between thread instances. Sub-classes can contribute to + * the parameter copying process via chaining. + */ + virtual void CopyParameters(vtkTemporalInterpolatedVelocityField* from); + using Superclass::FunctionValues; ///@{ /** @@ -95,12 +150,16 @@ public: */ void SelectVectors(const char* fieldName) { this->SetVectorsSelection(fieldName); } + ///@{ /** * In order to use this class, two sets of data must be supplied, * corresponding to times T1 and T2. Data is added via * this function. */ - void SetDataSetAtTime(int I, int N, double T, vtkDataSet* dataset, bool staticdataset); + void AddDataSetAtTime(int N, double T, vtkDataSet* dataset); + VTK_DEPRECATED_IN_9_2_0("Use AddDataSetAtTime and SetMeshOverTime instead") + void SetDataSetAtTime(int, int, double, vtkDataSet*, bool) {} + ///@} ///@{ /** @@ -150,22 +209,49 @@ public: int T, double pcoords[3], double* weights, vtkGenericCell*& cell, vtkDoubleArray* cellVectors); void ShowCacheResults(); - bool IsStatic(int datasetIndex); + VTK_DEPRECATED_IN_9_2_0("Use GetMeshOverTime() instead.") + bool IsStatic(int) { return this->MeshOverTime == STATIC; } void AdvanceOneTimeStep(); + ///@{ + /** + * Set / get the strategy used to perform the FindCell() operation. This + * strategy is used when operating on vtkPointSet subclasses. Note if the + * input is a composite dataset then the strategy will be used to clone + * one strategy per leaf dataset. + */ + virtual void SetFindCellStrategy(vtkFindCellStrategy*); + vtkGetObjectMacro(FindCellStrategy, vtkFindCellStrategy); + ///@} + protected: vtkTemporalInterpolatedVelocityField(); ~vtkTemporalInterpolatedVelocityField() override; - int FunctionValues(vtkDataSet* ds, double* x, double* f); virtual void SetVectorsSelection(const char* v); + int MeshOverTime = MeshOverTimeTypes::DIFFERENT; + + void InitializeWithLocators(vtkCompositeInterpolatedVelocityField* ivf, + const std::vector& datasets, vtkFindCellStrategy* strategy, + const std::vector>& locators, + const std::vector>& links); + + void CreateLocators(const std::vector& datasets, vtkFindCellStrategy* strategy, + std::vector>& locators); + void CreateLinks(const std::vector& datasets, + std::vector>& links); + void CreateLinearTransformCellLocators(const std::vector>& locators, + std::vector>& linearCellLocators); + double Vals1[3]; double Vals2[3]; double Times[2]; double LastGoodVelocity[3]; + static const double WEIGHT_TO_TOLERANCE; + // The weight (0.0->1.0) of the value of T between the two available // time values for the current computation double CurrentWeight; @@ -174,9 +260,13 @@ protected: // A scaling factor used when calculating the CurrentWeight { 1.0/(T2-T1) } double ScaleCoeff; - vtkSmartPointer IVF[2]; - // we want to keep track of static datasets so we can optimize caching - std::vector StaticDataSets; + vtkSmartPointer IVF[2]; + std::vector> Locators[2]; + std::vector> InitialCellLocators; + std::vector> Links[2]; + std::vector MaxCellSizes[2]; + + vtkFindCellStrategy* FindCellStrategy; private: // Hide this since we need multiple time steps and are using a different diff --git a/Filters/ParallelFlowPaths/Testing/Cxx/TestPParticleTracers.cxx b/Filters/ParallelFlowPaths/Testing/Cxx/TestPParticleTracers.cxx index 0aaf4db992c4..05ebffea665e 100644 --- a/Filters/ParallelFlowPaths/Testing/Cxx/TestPParticleTracers.cxx +++ b/Filters/ParallelFlowPaths/Testing/Cxx/TestPParticleTracers.cxx @@ -288,7 +288,7 @@ int TestPParticleTracer(vtkMPIController* c, int staticOption) ps->SetPoints(points); vtkNew filter; - filter->SetStaticMesh(staticOption); + filter->SetMeshOverTime(staticOption); filter->SetStaticSeeds(staticOption); filter->SetInputConnection(0, imageSource->GetOutputPort()); filter->SetInputData(1, ps); @@ -349,7 +349,7 @@ int TestPParticlePathFilter(vtkMPIController* c, int staticOption) ps->SetPoints(points); vtkNew filter; - filter->SetStaticMesh(staticOption); + filter->SetMeshOverTime(staticOption); filter->SetStaticSeeds(staticOption); filter->SetInputConnection(0, imageSource->GetOutputPort()); filter->SetInputData(1, ps); @@ -417,7 +417,7 @@ int TestPStreaklineFilter(vtkMPIController* c, int staticOption) ps->SetPoints(points); vtkNew filter; - filter->SetStaticMesh(staticOption); + filter->SetMeshOverTime(staticOption); filter->SetStaticSeeds(staticOption); filter->SetInputConnection(0, imageSource->GetOutputPort()); filter->SetInputData(1, ps); diff --git a/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx b/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx index 4c77b53e8516..97b0bc472fa0 100644 --- a/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx +++ b/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx @@ -33,7 +33,9 @@ #include using namespace vtkParticleTracerBaseNamespace; +using IDStates = vtkTemporalInterpolatedVelocityField::IDStates; +//------------------------------------------------------------------------------ vtkPParticleTracerBase::vtkPParticleTracerBase() { this->Controller = nullptr; @@ -185,7 +187,7 @@ void vtkPParticleTracerBase::AssignSeedsToProcessors(double t, vtkDataSet* sourc // since this is first test, avoid bad cache tests this->GetInterpolator()->ClearCache(); int searchResult = this->GetInterpolator()->TestPoint(pos); - if (searchResult == ID_INSIDE_ALL || searchResult == ID_OUTSIDE_T0) + if (searchResult == IDStates::INSIDE_ALL || searchResult == IDStates::OUTSIDE_T0) { // this particle is in this process's domain for the latest time step owningProcess[i] = myRank; @@ -330,7 +332,7 @@ bool vtkPParticleTracerBase::SendReceiveParticles( // since this is first test, avoid bad cache tests this->GetInterpolator()->ClearCache(); int searchResult = this->GetInterpolator()->TestPoint(tmpParticle.CurrentPosition.x); - if (searchResult == ID_INSIDE_ALL || searchResult == ID_OUTSIDE_T0) + if (searchResult == IDStates::INSIDE_ALL || searchResult == IDStates::OUTSIDE_T0) { // this particle is in this process's domain for the latest time step owningProcess[i] = myRank; -- GitLab From 2bdfbc768b6f48bdd9784a9299b8e9d934267140 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 11 May 2022 20:02:50 -0400 Subject: [PATCH 0213/1015] vtkParticleTracerBase: Comment style changes --- Filters/FlowPaths/vtkParticleTracerBase.cxx | 29 +-------------------- 1 file changed, 1 insertion(+), 28 deletions(-) diff --git a/Filters/FlowPaths/vtkParticleTracerBase.cxx b/Filters/FlowPaths/vtkParticleTracerBase.cxx index 4f0300537502..1b01776e77f4 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.cxx +++ b/Filters/FlowPaths/vtkParticleTracerBase.cxx @@ -238,7 +238,6 @@ int vtkParticleTracerBase::RequestInformation(vtkInformation* vtkNotUsed(request vtkDebugMacro(<< "vtkParticleTracerBase " "inputVector TIME_STEPS " << numberOfInputTimeSteps); - // // Get list of input time step values this->InputTimeValues.resize(numberOfInputTimeSteps); inInfo->Get(vtkStreamingDemandDrivenPipeline::TIME_STEPS(), this->InputTimeValues.data()); @@ -275,7 +274,6 @@ int vtkParticleTracerBase::RequestUpdateExtent(vtkInformation* vtkNotUsed(reques PRINT("RUE: " << this->HasCache << " " << this->FirstIteration << " " << this->StartTime << " " << this->TerminationTime << " " << this->CurrentTimeStep); - // // The output has requested a time value, what times must we ask from our input // do this only for the first time if (this->FirstIteration) @@ -663,12 +661,9 @@ void vtkParticleTracerBase::AssignSeedsToProcessors(double time, vtkDataSet* sou int ptId, ParticleVector& localSeedPoints, int& localAssignedCount) { ParticleVector candidates; - // // take points from the source object and create a particle list - // vtkIdType numSeeds = source->GetNumberOfPoints(); candidates.resize(numSeeds); - // for (vtkIdType i = 0; i < numSeeds; i++) { ParticleInformation& info = candidates[i]; @@ -694,9 +689,7 @@ void vtkParticleTracerBase::AssignSeedsToProcessors(double time, vtkDataSet* sou info.PointId = -1; info.TailPointId = -1; } - // // Gather all Seeds to all processors for classification - // this->TestParticles(candidates, localSeedPoints, localAssignedCount); // Assign unique identifiers taking into account uneven distribution @@ -721,7 +714,6 @@ void vtkParticleTracerBase::AssignUniqueIds( void vtkParticleTracerBase::UpdateParticleList(ParticleVector& candidates) { int numSeedsNew = static_cast(candidates.size()); - // for (int i = 0; i < numSeedsNew; i++) { // allocate a new particle on the list and get a reference to it @@ -769,9 +761,7 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) // set up the output vtkPolyData* output = vtkPolyData::New(); - // // Add the datasets to an interpolator object - // if (this->InitializeInterpolator() != VTK_OK) { if (this->CachedData[0]) @@ -831,16 +821,12 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) std::vector seedSources = this->GetSeedSources(inputVector[1], this->CurrentTimeStep); - // // Setup some variables - // vtkSmartPointer integrator; integrator.TakeReference(this->GetIntegrator()->NewInstance()); integrator->SetFunctionSet(this->Interpolator); - // // Make sure the Particle Positions are initialized with Seed particles - // if (this->StartTimeStep == this->CurrentTimeStep) { Assert(!this->HasCache); // shouldn't have cache if restarting @@ -887,7 +873,6 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) ParticleListIterator it_last = this->ParticleHistories.end(); ParticleListIterator it_next; - // // Perform multiple passes. The number of passes is equal to one more than // the maximum times a particle gets migrated between processes. bool continueExecuting = true; @@ -1116,11 +1101,8 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c else { Assert(point1[3] >= (currenttime - epsilon) && point1[3] <= (targettime + epsilon)); - - // // begin interpolation between available time values, if the particle has // a cached cell ID and dataset - try to use it, - // if (this->AllFixedGeometry) { this->Interpolator->SetCachedCellIds(info.CachedCellId, info.CachedDataSetId); @@ -1135,9 +1117,7 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c while (point1[3] < (targettime - epsilon)) { - // - // Here beginneth the real work - // + // Here begin the real work double error = 0; // If, with the next step, propagation will be larger than @@ -1235,7 +1215,6 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c } } - // // We got this far without error : // Insert the point into the output // Create any new scalars and interpolate existing ones @@ -1243,13 +1222,11 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c // if (particle_good) { - // // store the last Cell Ids and dataset indices for next time particle is updated // this->Interpolator->GetCachedCellIds(info.CachedCellId, info.CachedDataSetId); // info.TimeStepAge += 1; - // // Now generate the output geometry and scalars // this->AddParticle(info, velocity); @@ -1573,13 +1550,11 @@ void vtkParticleTracerBase::AddParticle( info.PointId = tempId; info.TailPointId = -1; - // // Interpolate all existing point attributes // In principle we always integrate the particle until it reaches Time2 // - so we don't need to do any interpolation of the scalars // between T0 and T1, just fetch the values // of the spatially interpolated scalars from T1. - // if (info.LocationState == IDStates::OUTSIDE_T1) { this->Interpolator->InterpolatePoint(0, this->OutputPointData, tempId); @@ -1588,9 +1563,7 @@ void vtkParticleTracerBase::AddParticle( { this->Interpolator->InterpolatePoint(1, this->OutputPointData, tempId); } - // // Compute vorticity - // if (this->ComputeVorticity) { vtkGenericCell* cell(nullptr); -- GitLab From 2d6133f8e1380390baa2de316360db00a05ec714 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 12 May 2022 07:11:03 -0400 Subject: [PATCH 0214/1015] vtkParticleTracerBase: Multithread --- Filters/FlowPaths/vtkParticlePathFilter.cxx | 8 +- Filters/FlowPaths/vtkParticlePathFilter.h | 3 +- Filters/FlowPaths/vtkParticleTracerBase.cxx | 345 ++++++++++++------ Filters/FlowPaths/vtkParticleTracerBase.h | 46 ++- .../vtkPParticlePathFilter.cxx | 8 +- .../vtkPParticlePathFilter.h | 3 +- .../vtkPParticleTracerBase.cxx | 7 + 7 files changed, 299 insertions(+), 121 deletions(-) diff --git a/Filters/FlowPaths/vtkParticlePathFilter.cxx b/Filters/FlowPaths/vtkParticlePathFilter.cxx index 54e7ce09b06b..64aa26d3330a 100644 --- a/Filters/FlowPaths/vtkParticlePathFilter.cxx +++ b/Filters/FlowPaths/vtkParticlePathFilter.cxx @@ -231,11 +231,11 @@ void vtkParticlePathFilter::InitializeExtraPointDataArrays(vtkPointData* outputP outputPD->AddArray(this->SimulationTimeStep); } -void vtkParticlePathFilter::AppendToExtraPointDataArrays( - vtkParticleTracerBaseNamespace::ParticleInformation& info) +void vtkParticlePathFilter::SetToExtraPointDataArrays( + vtkIdType particleId, vtkParticleTracerBaseNamespace::ParticleInformation& info) { - this->SimulationTime->InsertNextValue(info.SimulationTime); - this->SimulationTimeStep->InsertNextValue(info.InjectedStepId + info.TimeStepAge); + this->SimulationTime->SetValue(particleId, info.SimulationTime); + this->SimulationTimeStep->SetValue(particleId, info.InjectedStepId + info.TimeStepAge); } void vtkParticlePathFilter::Finalize() diff --git a/Filters/FlowPaths/vtkParticlePathFilter.h b/Filters/FlowPaths/vtkParticlePathFilter.h index db78a2362894..afcfc6dd24a6 100644 --- a/Filters/FlowPaths/vtkParticlePathFilter.h +++ b/Filters/FlowPaths/vtkParticlePathFilter.h @@ -71,7 +71,8 @@ protected: void ResetCache() override; int OutputParticles(vtkPolyData* particles) override; void InitializeExtraPointDataArrays(vtkPointData* outputPD) override; - void AppendToExtraPointDataArrays(vtkParticleTracerBaseNamespace::ParticleInformation&) override; + void SetToExtraPointDataArrays( + vtkIdType particleId, vtkParticleTracerBaseNamespace::ParticleInformation&) override; void Finalize() override; diff --git a/Filters/FlowPaths/vtkParticleTracerBase.cxx b/Filters/FlowPaths/vtkParticleTracerBase.cxx index 1b01776e77f4..54b82a7e679f 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.cxx +++ b/Filters/FlowPaths/vtkParticleTracerBase.cxx @@ -38,13 +38,16 @@ #include "vtkRungeKutta2.h" #include "vtkRungeKutta4.h" #include "vtkRungeKutta45.h" +#include "vtkSMPTools.h" #include "vtkSignedCharArray.h" #include "vtkSmartPointer.h" #include "vtkStreamingDemandDrivenPipeline.h" #include "vtkTemporalInterpolatedVelocityField.h" #include +#include #include +#include #ifdef DEBUGPARTICLETRACE #define Assert(x) assert(x) #define PRINT(x) cout << __LINE__ << ": " << x << endl; @@ -156,6 +159,7 @@ vtkParticleTracerBase::vtkParticleTracerBase() this->SetIntegratorType(RUNGE_KUTTA4); this->DisableResetCache = 0; + this->ForceSerialExecution = false; } //------------------------------------------------------------------------------ @@ -500,7 +504,7 @@ int vtkParticleTracerBase::InitializeInterpolator() this->AllFixedGeometry = this->MeshOverTime == MeshOverTimeTypes::STATIC; if (this->MeshOverTime == MeshOverTimeTypes::STATIC) { - vtkDebugMacro("Static Mesh optimizations Forced ON"); + vtkDebugMacro("Static Mesh over time optimizations Forced ON"); } this->Interpolator->Initialize(this->CachedData[0], this->CachedData[1]); @@ -747,6 +751,106 @@ int vtkParticleTracerBase::ProcessInput(vtkInformationVector** inputVector) return 1; } +//------------------------------------------------------------------------------ +namespace vtkParticleTracerBaseNamespace +{ +struct ParticleTracerFunctor +{ + vtkParticleTracerBase* PT; + double FromTime; + bool Sequential; + + std::vector::iterator> ParticleHistories; + std::atomic ParticleCount; + std::mutex EraseMutex; + + vtkSMPThreadLocal> TLIntegrator; + vtkSMPThreadLocal> TLInterpolator; + vtkSMPThreadLocal> TLCellVectors; + + ParticleTracerFunctor(vtkParticleTracerBase* pt, double fromTime, bool sequential) + : PT(pt) + , FromTime(fromTime) + , Sequential(sequential) + { + this->ParticleCount = 0; + size_t particleSize = pt->ParticleHistories.size(); + // Copy the particle histories into a vector for O(1) access + this->ParticleHistories.reserve(particleSize); + for (auto it = pt->ParticleHistories.begin(), end = pt->ParticleHistories.end(); it != end; + ++it) + { + this->ParticleHistories.push_back(it); + } + + this->PT->ResizeArrays(static_cast(particleSize)); + } + + void Initialize() + { + // Some data members of the local output require per-thread initialization. + auto& interpolator = this->TLInterpolator.Local(); + interpolator.TakeReference(this->PT->Interpolator->NewInstance()); + interpolator->CopyParameters(this->PT->Interpolator); + auto& integrator = this->TLIntegrator.Local(); + integrator.TakeReference(this->PT->GetIntegrator()->NewInstance()); + integrator->SetFunctionSet(interpolator); + auto& cellVectors = this->TLCellVectors.Local(); + cellVectors.TakeReference(vtkDoubleArray::New()); + + if (this->PT->ComputeVorticity) + { + cellVectors->SetNumberOfComponents(3); + cellVectors->Allocate(3 * VTK_CELL_SIZE); + } + } + + void operator()(vtkIdType begin, vtkIdType end) + { + auto& integrator = this->TLIntegrator.Local(); + auto& interpolator = this->TLInterpolator.Local(); + auto& cellVectors = this->TLCellVectors.Local(); + const double& currentTime = this->FromTime; + const double& targetTime = this->PT->CurrentTimeValue; + + for (vtkIdType i = begin; i < end; ++i) + { + auto it = this->ParticleHistories[i]; + this->PT->IntegrateParticle(it, currentTime, targetTime, integrator, interpolator, + cellVectors, this->ParticleCount, this->EraseMutex, this->Sequential); + if (this->PT->GetAbortExecute()) + { + vtkErrorWithObjectMacro(this->PT, "Execute aborted"); + break; + } + } + } + + void Reduce() + { + // squeeze possibly extra space + this->PT->ResizeArrays(this->ParticleCount); + } +}; +} + +void vtkParticleTracerBase::ResizeArrays(vtkIdType numTuples) +{ + // resize first so that if you already have data, you don't lose them + this->OutputCoordinates->Resize(numTuples); + this->ParticleCellsOffsets->Resize(numTuples); + this->ParticleCellsConnectivity->Resize(numTuples); + for (int i = 0; i < this->OutputPointData->GetNumberOfArrays(); ++i) + { + this->OutputPointData->GetArray(i)->Resize(numTuples); + } + // set number number of tuples because resize does not do that + this->OutputCoordinates->SetNumberOfPoints(numTuples); + this->ParticleCellsOffsets->SetNumberOfValues(numTuples); + this->ParticleCellsConnectivity->SetNumberOfValues(numTuples); + this->OutputPointData->SetNumberOfTuples(numTuples); +} + //------------------------------------------------------------------------------ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) { @@ -775,8 +879,12 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) vtkErrorMacro(<< "InitializeInterpolator failed"); return output; } + vtkDebugMacro(<< "About to allocate arrays "); + this->OutputCoordinates = vtkSmartPointer::New(); + this->ParticleCellsOffsets = vtkSmartPointer::New(); + this->ParticleCellsConnectivity = vtkSmartPointer::New(); + this->ParticleCells = vtkSmartPointer::New(); - vtkDebugMacro(<< "About to allocate point arrays "); this->ParticleAge = vtkSmartPointer::New(); this->ParticleIds = vtkSmartPointer::New(); this->ParticleSourceIds = vtkSmartPointer::New(); @@ -786,9 +894,6 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) this->ParticleVorticity = vtkSmartPointer::New(); this->ParticleRotation = vtkSmartPointer::New(); this->ParticleAngularVel = vtkSmartPointer::New(); - this->CellVectors = vtkSmartPointer::New(); - this->ParticleCells = vtkSmartPointer::New(); - this->OutputCoordinates = vtkSmartPointer::New(); this->OutputPointData = output->GetPointData(); this->OutputPointData->Initialize(); @@ -801,6 +906,7 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) this->InjectedStepIds->SetName("InjectionStepId"); this->ErrorCodeArray->SetName("ErrorCode"); + this->CellVectors = vtkSmartPointer::New(); if (this->ComputeVorticity) { this->CellVectors->SetNumberOfComponents(3); @@ -809,6 +915,18 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) this->ParticleRotation->SetName("Rotation"); this->ParticleAngularVel->SetName("AngularVelocity"); } + this->OutputPointData->AddArray(this->ParticleIds); + this->OutputPointData->AddArray(this->ParticleSourceIds); + this->OutputPointData->AddArray(this->InjectedPointIds); + this->OutputPointData->AddArray(this->InjectedStepIds); + this->OutputPointData->AddArray(this->ErrorCodeArray); + this->OutputPointData->AddArray(this->ParticleAge); + if (this->ComputeVorticity) + { + this->OutputPointData->AddArray(this->ParticleVorticity); + this->OutputPointData->AddArray(this->ParticleRotation); + this->OutputPointData->AddArray(this->ParticleAngularVel); + } this->InitializeExtraPointDataArrays(output->GetPointData()); output->SetPoints(this->OutputCoordinates); @@ -856,22 +974,24 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) if (this->CurrentTimeStep == this->StartTimeStep) // just add all the particles { + // resize arrays + this->ResizeArrays(static_cast(this->ParticleHistories.size())); + vtkIdType counter = 0; for (ParticleListIterator itr = this->ParticleHistories.begin(); - itr != this->ParticleHistories.end(); itr++) + itr != this->ParticleHistories.end(); itr++, counter++) { ParticleInformation& info(*itr); this->Interpolator->TestPoint(info.CurrentPosition.x); double velocity[3]; this->Interpolator->GetLastGoodVelocity(velocity); info.speed = vtkMath::Norm(velocity); - this->AddParticle(*itr, velocity); + this->SetParticle(*itr, velocity, this->Interpolator, counter, this->CellVectors); } } else { ParticleListIterator it_first = this->ParticleHistories.begin(); ParticleListIterator it_last = this->ParticleHistories.end(); - ParticleListIterator it_next; // Perform multiple passes. The number of passes is equal to one more than // the maximum times a particle gets migrated between processes. @@ -881,18 +1001,17 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) { vtkDebugMacro(<< "Begin Pass " << pass << " with " << this->ParticleHistories.size() << " Particles"); - for (ParticleListIterator it = it_first; it != it_last;) + bool sequential = this->ForceSerialExecution || this->ParticleHistories.size() < 100; + ParticleTracerFunctor particleTracerFunctor(this, from, sequential); + if (sequential) { - // Keep the 'next' iterator handy because if a particle is terminated - // or leaves the domain, the 'current' iterator will be deleted. - it_next = it; - it_next++; - this->IntegrateParticle(it, from, this->CurrentTimeValue, integrator); - if (this->GetAbortExecute()) - { - break; - } - it = it_next; + particleTracerFunctor.Initialize(); + particleTracerFunctor(0, this->ParticleHistories.size()); + particleTracerFunctor.Reduce(); + } + else + { + vtkSMPTools::For(0, this->ParticleHistories.size(), particleTracerFunctor); } // Particles might have been deleted during the first pass as they move // out of domain or age. Before adding any new particles that are sent @@ -955,28 +1074,21 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) itr = this->ParticleHistories.begin(); } - for (; itr != this->ParticleHistories.end(); ++itr) + // resize arrays + vtkIdType numTuples = this->OutputPointData->GetNumberOfTuples(); + auto extraSpace = static_cast(std::distance(itr, this->ParticleHistories.end())); + this->ResizeArrays(numTuples + extraSpace); + vtkIdType counter = 0; + for (; itr != this->ParticleHistories.end(); ++itr, counter++) { this->Interpolator->TestPoint(itr->CurrentPosition.x); double velocity[3]; this->Interpolator->GetLastGoodVelocity(velocity); itr->speed = vtkMath::Norm(velocity); - this->AddParticle(*itr, velocity); + this->SetParticle(*itr, velocity, this->Interpolator, numTuples + counter, this->CellVectors); } } - - this->OutputPointData->AddArray(this->ParticleIds); - this->OutputPointData->AddArray(this->ParticleSourceIds); - this->OutputPointData->AddArray(this->InjectedPointIds); - this->OutputPointData->AddArray(this->InjectedStepIds); - this->OutputPointData->AddArray(this->ErrorCodeArray); - this->OutputPointData->AddArray(this->ParticleAge); - if (this->ComputeVorticity) - { - this->OutputPointData->AddArray(this->ParticleVorticity); - this->OutputPointData->AddArray(this->ParticleRotation); - this->OutputPointData->AddArray(this->ParticleAngularVel); - } + this->ParticleCells->SetData(this->ParticleCellsOffsets, this->ParticleCellsConnectivity); this->ParticlePointData = vtkSmartPointer::New(); this->ParticlePointData->ShallowCopy(this->OutputPointData); @@ -1076,25 +1188,27 @@ int vtkParticleTracerBase::RequestData( } //------------------------------------------------------------------------------ -void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double currenttime, - double targettime, vtkInitialValueProblemSolver* integrator) +void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double currentTime, + double targetTime, vtkInitialValueProblemSolver* integrator, + vtkTemporalInterpolatedVelocityField* interpolator, vtkDoubleArray* cellVectors, + std::atomic& particleCount, std::mutex& eraseMutex, bool sequential) { - double epsilon = (targettime - currenttime) / 100.0; + double epsilon = (targetTime - currentTime) / 100.0; double velocity[3], point1[4], point2[4] = { 0.0, 0.0, 0.0, 0.0 }; double minStep = 0, maxStep = 0; double stepWanted, stepTaken = 0.0; - int substeps = 0; + int subSteps = 0; - ParticleInformation& info = (*it); - ParticleInformation previous = (*it); - bool particle_good = true; + ParticleInformation& info = *it; + ParticleInformation previous = *it; + bool particleGood = true; info.ErrorCode = 0; // Get the Initial point {x,y,z,t} memcpy(point1, &info.CurrentPosition, sizeof(Position)); - if (currenttime == targettime) + if (currentTime == targetTime) { Assert(point1[3] == currenttime); } @@ -1105,17 +1219,17 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c // a cached cell ID and dataset - try to use it, if (this->AllFixedGeometry) { - this->Interpolator->SetCachedCellIds(info.CachedCellId, info.CachedDataSetId); + interpolator->SetCachedCellIds(info.CachedCellId, info.CachedDataSetId); } else { - this->Interpolator->ClearCache(); + interpolator->ClearCache(); } - double delT = (targettime - currenttime) * this->IntegrationStep; + double delT = (targetTime - currentTime) * this->IntegrationStep; epsilon = delT * 1E-3; - while (point1[3] < (targettime - epsilon)) + while (point1[3] < (targetTime - epsilon)) { // Here begin the real work double error = 0; @@ -1123,9 +1237,9 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c // If, with the next step, propagation will be larger than // max, reduce it so that it is (approximately) equal to max. stepWanted = delT; - if ((point1[3] + stepWanted) > targettime) + if ((point1[3] + stepWanted) > targetTime) { - stepWanted = targettime - point1[3]; + stepWanted = targetTime - point1[3]; maxStep = stepWanted; } @@ -1136,7 +1250,7 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c { // if the particle is sent, remove it from the list info.ErrorCode = 1; - if (!this->RetryWithPush(info, point1, delT, substeps)) + if (!this->RetryWithPush(info, point1, delT, subSteps, interpolator)) { if (previous.PointId < 0 && previous.TailPointId < 0) { @@ -1144,22 +1258,33 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c } else { - this->SendParticleToAnotherProcess(info, previous, this->ParticlePointData); + if (sequential) + { + this->SendParticleToAnotherProcess(info, previous, this->ParticlePointData); + } } - this->ParticleHistories.erase(it); - particle_good = false; + if (sequential) + { + this->ParticleHistories.erase(it); + } + else + { + const std::lock_guard lock(eraseMutex); + this->ParticleHistories.erase(it); + } + particleGood = false; break; } else { // particle was not sent, retry saved it, so copy info back - substeps++; + subSteps++; memcpy(point1, &info.CurrentPosition, sizeof(Position)); } } else // success, increment position/time { - substeps++; + subSteps++; // increment the particle time point2[3] = point1[3] + stepTaken; @@ -1182,35 +1307,51 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c } } - if (particle_good) + if (particleGood) { // The integration succeeded, but check the computed final position // is actually inside the domain (the intermediate steps taken inside // the integrator were ok, but the final step may just pass out) // if it moves out, we can't interpolate scalars, so we must send it away - info.LocationState = this->Interpolator->TestPoint(info.CurrentPosition.x); + info.LocationState = interpolator->TestPoint(info.CurrentPosition.x); if (info.LocationState == IDStates::OUTSIDE_ALL) { info.ErrorCode = 2; // if the particle is sent, remove it from the list - if (this->SendParticleToAnotherProcess(info, previous, this->OutputPointData)) + if (!sequential || + this->SendParticleToAnotherProcess(info, previous, this->OutputPointData)) { - this->ParticleHistories.erase(it); - particle_good = false; + if (sequential) + { + this->ParticleHistories.erase(it); + } + else + { + const std::lock_guard lock(eraseMutex); + this->ParticleHistories.erase(it); + } + particleGood = false; } } } // Has this particle stagnated - // - if (particle_good) + if (particleGood) { - this->Interpolator->GetLastGoodVelocity(velocity); + interpolator->GetLastGoodVelocity(velocity); info.speed = vtkMath::Norm(velocity); if (it->speed <= this->TerminalSpeed) { - this->ParticleHistories.erase(it); - particle_good = false; + if (sequential) + { + this->ParticleHistories.erase(it); + } + else + { + const std::lock_guard lock(eraseMutex); + this->ParticleHistories.erase(it); + } + particleGood = false; } } } @@ -1219,21 +1360,17 @@ void vtkParticleTracerBase::IntegrateParticle(ParticleListIterator& it, double c // Insert the point into the output // Create any new scalars and interpolate existing ones // Cache cell ids and datasets - // - if (particle_good) + if (particleGood) { // store the last Cell Ids and dataset indices for next time particle is updated - // - this->Interpolator->GetCachedCellIds(info.CachedCellId, info.CachedDataSetId); - // + interpolator->GetCachedCellIds(info.CachedCellId, info.CachedDataSetId); info.TimeStepAge += 1; // Now generate the output geometry and scalars - // - this->AddParticle(info, velocity); + this->SetParticle(info, velocity, interpolator, particleCount++, cellVectors); } else { - this->Interpolator->ClearCache(); + interpolator->ClearCache(); } #ifdef DEBUGPARTICLETRACE @@ -1356,7 +1493,7 @@ void vtkParticleTracerBase::CalculateVorticity( vtkGenericCell* cell, double pcoords[3], vtkDoubleArray* cellVectors, double vorticity[3]) { double* cellVel; - double derivs[9]; + double derivs[VTK_MAXIMUM_NUMBER_OF_POINTS * 3]; cellVel = cellVectors->GetPointer(0); cell->Derivatives(0, pcoords, cellVel, 3, derivs); @@ -1470,13 +1607,13 @@ void vtkParticleTracerBase::CreateProtoPD(vtkDataObject* input) } //------------------------------------------------------------------------------ -bool vtkParticleTracerBase::RetryWithPush( - ParticleInformation& info, double* point1, double delT, int substeps) +bool vtkParticleTracerBase::RetryWithPush(ParticleInformation& info, double* point1, double delT, + int substeps, vtkTemporalInterpolatedVelocityField* interpolator) { double velocity[3]; - this->Interpolator->ClearCache(); + interpolator->ClearCache(); - info.LocationState = this->Interpolator->TestPoint(point1); + info.LocationState = interpolator->TestPoint(point1); if (info.LocationState == IDStates::OUTSIDE_ALL) { @@ -1485,7 +1622,7 @@ bool vtkParticleTracerBase::RetryWithPush( // send the particle 'as is' and hope it lands in another process if (substeps > 0) { - this->Interpolator->GetLastGoodVelocity(velocity); + interpolator->GetLastGoodVelocity(velocity); } else { @@ -1496,19 +1633,19 @@ bool vtkParticleTracerBase::RetryWithPush( else if (info.LocationState == IDStates::OUTSIDE_T0) { // the particle left the volume but can be tested at T2, so use the velocity at T2 - this->Interpolator->GetLastGoodVelocity(velocity); + interpolator->GetLastGoodVelocity(velocity); info.ErrorCode = 4; } else if (info.LocationState == IDStates::OUTSIDE_T1) { // the particle left the volume but can be tested at T1, so use the velocity at T1 - this->Interpolator->GetLastGoodVelocity(velocity); + interpolator->GetLastGoodVelocity(velocity); info.ErrorCode = 5; } else { // The test returned INSIDE_ALL, so test failed near start of integration, - this->Interpolator->GetLastGoodVelocity(velocity); + interpolator->GetLastGoodVelocity(velocity); } // try adding a one increment push to the particle to get over a rotating/moving boundary @@ -1518,7 +1655,7 @@ bool vtkParticleTracerBase::RetryWithPush( } info.CurrentPosition.x[3] += delT; - info.LocationState = this->Interpolator->TestPoint(info.CurrentPosition.x); + info.LocationState = interpolator->TestPoint(info.CurrentPosition.x); info.age += delT; info.SimulationTime += delT; // = this->GetCurrentTimeValue(); @@ -1532,22 +1669,24 @@ bool vtkParticleTracerBase::RetryWithPush( } //------------------------------------------------------------------------------ -void vtkParticleTracerBase::AddParticle( - vtkParticleTracerBaseNamespace::ParticleInformation& info, double* velocity) +void vtkParticleTracerBase::SetParticle(vtkParticleTracerBaseNamespace::ParticleInformation& info, + double* velocity, vtkTemporalInterpolatedVelocityField* interpolator, vtkIdType particleId, + vtkDoubleArray* cellVectors) { const double* coord = info.CurrentPosition.x; - vtkIdType tempId = this->OutputCoordinates->InsertNextPoint(coord); + this->OutputCoordinates->SetPoint(particleId, coord); // create the cell - this->ParticleCells->InsertNextCell(1, &tempId); + this->ParticleCellsOffsets->SetValue(particleId, particleId + 1); + this->ParticleCellsConnectivity->SetValue(particleId, particleId); // set the easy scalars for this particle - this->ParticleIds->InsertNextValue(info.UniqueParticleId); - this->ParticleSourceIds->InsertNextValue(info.SourceID); - this->InjectedPointIds->InsertNextValue(info.InjectedPointId); - this->InjectedStepIds->InsertNextValue(info.InjectedStepId); - this->ErrorCodeArray->InsertNextValue(info.ErrorCode); - this->ParticleAge->InsertNextValue(info.age); - this->AppendToExtraPointDataArrays(info); - info.PointId = tempId; + this->ParticleIds->SetValue(particleId, info.UniqueParticleId); + this->ParticleSourceIds->SetValue(particleId, info.SourceID); + this->InjectedPointIds->SetValue(particleId, info.InjectedPointId); + this->InjectedStepIds->SetValue(particleId, info.InjectedStepId); + this->ErrorCodeArray->SetValue(particleId, info.ErrorCode); + this->ParticleAge->SetValue(particleId, info.age); + this->SetToExtraPointDataArrays(particleId, info); + info.PointId = particleId; info.TailPointId = -1; // Interpolate all existing point attributes @@ -1557,11 +1696,11 @@ void vtkParticleTracerBase::AddParticle( // of the spatially interpolated scalars from T1. if (info.LocationState == IDStates::OUTSIDE_T1) { - this->Interpolator->InterpolatePoint(0, this->OutputPointData, tempId); + interpolator->InterpolatePoint(0, this->OutputPointData, particleId); } else { - this->Interpolator->InterpolatePoint(1, this->OutputPointData, tempId); + interpolator->InterpolatePoint(1, this->OutputPointData, particleId); } // Compute vorticity if (this->ComputeVorticity) @@ -1572,15 +1711,15 @@ void vtkParticleTracerBase::AddParticle( // have to use T0 if particle is out at T1, otherwise use T1 if (info.LocationState == IDStates::OUTSIDE_T1) { - this->Interpolator->GetVorticityData(0, pcoords, weights, cell, this->CellVectors); + interpolator->GetVorticityData(0, pcoords, weights, cell, cellVectors); } else { - this->Interpolator->GetVorticityData(1, pcoords, weights, cell, this->CellVectors); + interpolator->GetVorticityData(1, pcoords, weights, cell, cellVectors); } - this->CalculateVorticity(cell, pcoords, CellVectors, vorticity); - this->ParticleVorticity->InsertNextTuple(vorticity); + this->CalculateVorticity(cell, pcoords, cellVectors, vorticity); + this->ParticleVorticity->SetTuple(particleId, vorticity); // local rotation = vorticity . unit tangent ( i.e. velocity/speed ) if (info.speed != 0.0) { @@ -1592,8 +1731,8 @@ void vtkParticleTracerBase::AddParticle( { omega = 0.0; } - vtkIdType index = this->ParticleAngularVel->InsertNextValue(omega); - if (index > 0) + this->ParticleAngularVel->SetValue(particleId, omega); + if (particleId > 0) { rotation = info.rotation + (info.angularVel + omega) / 2 * (info.CurrentPosition.x[3] - info.time); @@ -1602,7 +1741,7 @@ void vtkParticleTracerBase::AddParticle( { rotation = 0.0; } - this->ParticleRotation->InsertNextValue(rotation); + this->ParticleRotation->SetValue(particleId, rotation); info.rotation = rotation; info.angularVel = omega; info.time = info.CurrentPosition.x[3]; diff --git a/Filters/FlowPaths/vtkParticleTracerBase.h b/Filters/FlowPaths/vtkParticleTracerBase.h index 94dfc1b53feb..1e9c49e8bf9d 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.h +++ b/Filters/FlowPaths/vtkParticleTracerBase.h @@ -34,6 +34,7 @@ #include "vtkSmartPointer.h" // For vtkSmartPointer #include // STL Header +#include // STL Header #include // STL Header class vtkAbstractParticleWriter; @@ -97,11 +98,13 @@ typedef std::vector ParticleVector; typedef ParticleVector::iterator ParticleIterator; typedef std::list ParticleDataList; typedef ParticleDataList::iterator ParticleListIterator; +struct ParticleTracerFunctor; }; class VTKFILTERSFLOWPATHS_EXPORT vtkParticleTracerBase : public vtkPolyDataAlgorithm { public: + friend struct vtkParticleTracerBaseNamespace::ParticleTracerFunctor; enum Solvers { RUNGE_KUTTA2, @@ -338,6 +341,15 @@ public: void RemoveAllSources(); ///@} + ///@{ + /** + * Force the filter to run particle tracer in serial. This affects + * the filter only if more than 100 particles is to be generated. + */ + vtkGetMacro(ForceSerialExecution, bool); + vtkSetMacro(ForceSerialExecution, bool); + vtkBooleanMacro(ForceSerialExecution, bool); + ///@} protected: vtkSmartPointer Output; // managed by child classes ///@{ @@ -355,6 +367,9 @@ protected: vtkTypeBool DisableResetCache; // whether to enable ResetCache() method ///@} + // Control execution as serial or threaded + bool ForceSerialExecution; + vtkParticleTracerBase(); ~vtkParticleTracerBase() override; @@ -459,7 +474,9 @@ protected: * particle between the two times supplied. */ void IntegrateParticle(vtkParticleTracerBaseNamespace::ParticleListIterator& it, - double currenttime, double terminationtime, vtkInitialValueProblemSolver* integrator); + double currentTime, double targetTime, vtkInitialValueProblemSolver* integrator, + vtkTemporalInterpolatedVelocityField* interpolator, vtkDoubleArray* cellVectors, + std::atomic& particleCount, std::mutex& eraseMutex, bool sequential); // if the particle is added to send list, then returns value is 1, // if it is kept on this process after a retry return value is 0 @@ -505,7 +522,9 @@ protected: double GetCacheDataTime(); virtual void ResetCache(); - void AddParticle(vtkParticleTracerBaseNamespace::ParticleInformation& info, double* velocity); + void SetParticle(vtkParticleTracerBaseNamespace::ParticleInformation& info, double* velocity, + vtkTemporalInterpolatedVelocityField* interpolator, vtkIdType particleId, + vtkDoubleArray* cellVectors); ///@{ /** @@ -521,13 +540,18 @@ protected: vtkGetMacro(ReinjectionCounter, int); vtkGetMacro(CurrentTimeValue, double); + void ResizeArrays(vtkIdType numTuples); + /** * Methods to append values to existing point data arrays that may * only be desired on specific concrete derived classes. */ virtual void InitializeExtraPointDataArrays(vtkPointData* vtkNotUsed(outputPD)) {} - virtual void AppendToExtraPointDataArrays(vtkParticleTracerBaseNamespace::ParticleInformation&) {} + virtual void SetToExtraPointDataArrays( + vtkIdType, vtkParticleTracerBaseNamespace::ParticleInformation&) + { + } vtkTemporalInterpolatedVelocityField* GetInterpolator(); @@ -548,7 +572,7 @@ private: * to the integrator that is used. */ bool RetryWithPush(vtkParticleTracerBaseNamespace::ParticleInformation& info, double* point1, - double delT, int subSteps); + double delT, int subSteps, vtkTemporalInterpolatedVelocityField* interpolator); bool SetTerminationTimeNoModify(double t); @@ -606,9 +630,15 @@ private: using bounds = struct bounds_t; std::vector CachedBounds[2]; - // temporary variables used by Exeucte(), for convenience only + // variables used by Execute() to produce output + + vtkSmartPointer DataReferenceT[2]; vtkSmartPointer OutputCoordinates; + vtkSmartPointer ParticleCellsConnectivity; + vtkSmartPointer ParticleCellsOffsets; + vtkSmartPointer ParticleCells; + vtkSmartPointer ParticleAge; vtkSmartPointer ParticleIds; vtkSmartPointer ParticleSourceIds; @@ -618,10 +648,10 @@ private: vtkSmartPointer ParticleVorticity; vtkSmartPointer ParticleRotation; vtkSmartPointer ParticleAngularVel; - vtkSmartPointer CellVectors; vtkSmartPointer OutputPointData; - vtkSmartPointer DataReferenceT[2]; - vtkSmartPointer ParticleCells; + + // temp array + vtkSmartPointer CellVectors; vtkParticleTracerBase(const vtkParticleTracerBase&) = delete; void operator=(const vtkParticleTracerBase&) = delete; diff --git a/Filters/ParallelFlowPaths/vtkPParticlePathFilter.cxx b/Filters/ParallelFlowPaths/vtkPParticlePathFilter.cxx index 39e53fe04f84..ae85f1cdf744 100644 --- a/Filters/ParallelFlowPaths/vtkPParticlePathFilter.cxx +++ b/Filters/ParallelFlowPaths/vtkPParticlePathFilter.cxx @@ -138,11 +138,11 @@ void vtkPParticlePathFilter::InitializeExtraPointDataArrays(vtkPointData* output outputPD->AddArray(this->SimulationTimeStep); } -void vtkPParticlePathFilter::AppendToExtraPointDataArrays( - vtkParticleTracerBaseNamespace::ParticleInformation& info) +void vtkPParticlePathFilter::SetToExtraPointDataArrays( + vtkIdType particleId, vtkParticleTracerBaseNamespace::ParticleInformation& info) { - this->SimulationTime->InsertNextValue(info.SimulationTime); - this->SimulationTimeStep->InsertNextValue(info.InjectedStepId + info.TimeStepAge); + this->SimulationTime->SetValue(particleId, info.SimulationTime); + this->SimulationTimeStep->SetValue(particleId, info.InjectedStepId + info.TimeStepAge); } void vtkPParticlePathFilter::Finalize() diff --git a/Filters/ParallelFlowPaths/vtkPParticlePathFilter.h b/Filters/ParallelFlowPaths/vtkPParticlePathFilter.h index 17b7c611cea1..83601a1729ef 100644 --- a/Filters/ParallelFlowPaths/vtkPParticlePathFilter.h +++ b/Filters/ParallelFlowPaths/vtkPParticlePathFilter.h @@ -45,7 +45,8 @@ protected: void ResetCache() override; int OutputParticles(vtkPolyData* poly) override; void InitializeExtraPointDataArrays(vtkPointData* outputPD) override; - void AppendToExtraPointDataArrays(vtkParticleTracerBaseNamespace::ParticleInformation&) override; + void SetToExtraPointDataArrays( + vtkIdType particleId, vtkParticleTracerBaseNamespace::ParticleInformation&) override; void Finalize() override; // diff --git a/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx b/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx index 97b0bc472fa0..97d30981f6ad 100644 --- a/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx +++ b/Filters/ParallelFlowPaths/vtkPParticleTracerBase.cxx @@ -20,6 +20,7 @@ #include "vtkDataArray.h" #include "vtkInformation.h" #include "vtkInformationVector.h" +#include "vtkMPIController.h" #include "vtkMultiProcessController.h" #include "vtkMultiProcessStream.h" #include "vtkObjectFactory.h" @@ -40,6 +41,7 @@ vtkPParticleTracerBase::vtkPParticleTracerBase() { this->Controller = nullptr; this->SetController(vtkMultiProcessController::GetGlobalController()); + this->ForceSerialExecution = true; } //------------------------------------------------------------------------------ @@ -52,6 +54,11 @@ vtkPParticleTracerBase::~vtkPParticleTracerBase() //------------------------------------------------------------------------------ vtkPolyData* vtkPParticleTracerBase::Execute(vtkInformationVector** inputVector) { + if (!vtkMPIController::SafeDownCast(this->Controller) || + this->Controller->GetNumberOfProcesses() == 1) + { + this->ForceSerialExecution = false; + } vtkDebugMacro(<< "Clear MPI send list "); this->MPISendList.clear(); this->Tail.clear(); -- GitLab From f03718cfbb3209a9e69ac107a771bfa7f3d51b90 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 12 May 2022 07:48:58 -0400 Subject: [PATCH 0215/1015] Add changelog --- .../dev/improve-vtkParticleTracerBase.md | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 Documentation/release/dev/improve-vtkParticleTracerBase.md diff --git a/Documentation/release/dev/improve-vtkParticleTracerBase.md b/Documentation/release/dev/improve-vtkParticleTracerBase.md new file mode 100644 index 000000000000..4a056b381c6a --- /dev/null +++ b/Documentation/release/dev/improve-vtkParticleTracerBase.md @@ -0,0 +1,35 @@ +## Improve vtkParticleTracerBase + +vtkParticleTracerBase, (the base class for vtkPParticleTracerBase, vtkParticleTracer, vtkPParticleTracer, +vtkParticlePathFilter, vtkPParticlePathFilter) has the follow improvements: + +1) It has been multithreaded using vtkSMPTools. Multithreading is used when there is only one MPI process, or the number + of particles is greater than 100. +2) Its interpolator can now use either a point locator or a cell locator (default) for interpolation. +3) Instead of the _StaticMesh_ flag, it now has the _MeshOverTime_ flag which has the following values: + 1) DIFFERENT: The mesh is different over time. + 2) STATIC: The mesh is the same over time. + 3) LINEAR_TRANSFORMATION: The mesh is different over time, but it is a linear transformation of the first + time-step's mesh. + 1) For cell locators, this flag internally makes use of the new vtkLinearTransformCellLocator. This way the + locator is only built once in the first time-step. + 2) For point locators, this flag internally re-uses the same cell links, but rebuilds the point locator since + there is no vtkLinearTransformPointLocator yet. + 4) SAME_TOPOLOGY: The mesh is different over time, but it preserves the same topology (same number of points/cells, + same connectivity). + 1) For cell locators, this is equivalent to _MeshOverTime_ = DIFFERENT. + 2) For point locators, this flag internally re-uses the same cell links. + +vtkTemporalInterpolatedVelocityField has been heavily refactored. Internally, vtkTemporalInterpolatedVelocityField used +to use vtkCachingInterpolatedVelocityField, which had some numerical mistakes, and it was restricted to cell locators. +Now it uses vtkCompositeInterpolatedVelocityField which has been enhanced as needed. Due to this change, +vtkTemporalInterpolatedVelocityField can now use the FindCellStrategy approach, which allows it to use a cell locator +or a point locator to find a cell. The cell locator used is now vtkStaticCellLocator instead of vtkCellLocator which has +multithreaded BuildLocator() method and caches cell bounds by default. The point locator used is vtkStaticPointLocator +which has multithreaded BuildLocator() method. Like vtkParticleTracerBase, vtkTemporalInterpolatedVelocityField also +supports MeshOverTime instead of StaticMesh. + +Finally, vtkCachingInterpolatedVelocityField, vtkCellLocatorInterpolatedVelocityField, +vtkInterpolatedVelocityField has been deprecated. Instead of vtkCellLocatorInterpolatedVelocityField use +vtkCompositeInterpolatedVelocityField with a vtkCellLocatorStrategy, and instead of vtkInterpolatedVelocityField use +vtkCompositeInterpolatedVelocityField with a vtkClosestPointStrategy. -- GitLab From d527a5818d8dc8f0f7fd370fddd2a82fa1c1b837 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 12 May 2022 14:25:28 -0400 Subject: [PATCH 0216/1015] vtkCellTreeLocator: Use PIMPL for smaller memory usage Also convert recursive build to a loop using a stack. --- Common/DataModel/vtkCellLocator.cxx | 2 +- Common/DataModel/vtkCellTreeLocator.cxx | 1155 ++++++++++++--------- Common/DataModel/vtkCellTreeLocator.h | 110 +- Common/DataModel/vtkStaticCellLocator.cxx | 2 +- Filters/FlowPaths/vtkModifiedBSPTree.cxx | 2 +- 5 files changed, 705 insertions(+), 566 deletions(-) diff --git a/Common/DataModel/vtkCellLocator.cxx b/Common/DataModel/vtkCellLocator.cxx index 397652ce6083..766d420ea08f 100644 --- a/Common/DataModel/vtkCellLocator.cxx +++ b/Common/DataModel/vtkCellLocator.cxx @@ -1406,7 +1406,7 @@ int vtkCellLocator::IntersectWithLine(const double p1[3], const double p2[3], co { vtkIdType numIntersections = static_cast(cellIntersections.size()); std::sort(cellIntersections.begin(), cellIntersections.end(), - [&](const IntersectionInfo& a, const IntersectionInfo b) { return a.T < b.T; }); + [&](const IntersectionInfo& a, const IntersectionInfo& b) { return a.T < b.T; }); if (points) { points->SetNumberOfPoints(numIntersections); diff --git a/Common/DataModel/vtkCellTreeLocator.cxx b/Common/DataModel/vtkCellTreeLocator.cxx index 2ad5e96f62c9..353cbc34d0e2 100644 --- a/Common/DataModel/vtkCellTreeLocator.cxx +++ b/Common/DataModel/vtkCellTreeLocator.cxx @@ -21,21 +21,20 @@ #include "vtkBox.h" #include "vtkCellArray.h" #include "vtkGenericCell.h" -#include "vtkIdListCollection.h" #include "vtkObjectFactory.h" #include "vtkPointData.h" #include "vtkPolyData.h" -#include "vtkSmartPointer.h" #include #include -#include #include #include +//------------------------------------------------------------------------------ vtkStandardNewMacro(vtkCellTreeLocator); -namespace +//------------------------------------------------------------------------------ +namespace detail { enum { @@ -47,164 +46,253 @@ enum NEG_Z }; #define CELLTREE_MAX_DEPTH 32 -} //------------------------------------------------------------------------------ -// This class is the basic building block of the cell tree. There is a node per dimension. i.e. -// There are 3 vtkCellTreeNode in x,y,z directions. In contrast, vtkModifiedBSPTree class stores -// the bounding planes for all 3 dimensions in a single node. LeftMax and rm defines the bounding -// planes. start is the location in the cell tree. e.g. for root node start is zero. size is the -// number of the nodes under the tree -inline void vtkCellTreeLocator::vtkCellTreeNode::MakeNode(vtkIdType left, vtkIdType d, - double b[2]) // b is an array containing left max and right min values +// Perform locator operations like FindCell. Uses templated subclasses +// to reduce memory and enhance speed. +struct vtkCellTree { - this->Index = (d & 3) | (left << 2); - this->LeftMax = b[0]; - this->RightMin = b[1]; -} + double DataBBox[6]; // This store the bounding values of the dataset + vtkCellTreeLocator* Locator; + vtkDataSet* DataSet; -//------------------------------------------------------------------------------ -inline void vtkCellTreeLocator::vtkCellTreeNode::SetChildren(vtkIdType left) -{ - this->Index = GetDimension() | (left << 2); // In index 2 LSBs (Least Significant Bits) store the - // dimension. MSBs store the position -} + vtkCellTree(vtkCellTreeLocator* locator) + : Locator(locator) + , DataSet(locator->GetDataSet()) + { + } -//------------------------------------------------------------------------------ -inline bool vtkCellTreeLocator::vtkCellTreeNode::IsNode() const -{ - return (this->Index & 3) != 3; // For a leaf 2 LSBs in index is 3 -} + virtual ~vtkCellTree() = default; -//------------------------------------------------------------------------------ -inline vtkIdType vtkCellTreeLocator::vtkCellTreeNode::GetLeftChildIndex() const -{ - return (this->Index >> 2); -} + // Satisfy cell locator API + virtual vtkIdType FindCell( + double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) = 0; + virtual void FindCellsWithinBounds(double* bbox, vtkIdList* cells) = 0; + virtual int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, + double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) = 0; + virtual int IntersectWithLine(const double p1[3], const double p2[3], const double tol, + vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) = 0; + virtual void GenerateRepresentation(int level, vtkPolyData* pd) = 0; -//------------------------------------------------------------------------------ -inline vtkIdType vtkCellTreeLocator::vtkCellTreeNode::GetRightChildIndex() const -{ - return (this->Index >> 2) + - 1; // Right child node is adjacent to the Left child node in the data structure -} + // Utility methods + static int getDominantAxis(const double dir[3]) + { + double tX = (dir[0] > 0) ? dir[0] : -dir[0]; + double tY = (dir[1] > 0) ? dir[1] : -dir[1]; + double tZ = (dir[2] > 0) ? dir[2] : -dir[2]; + if (tX > tY && tX > tZ) + { + return ((dir[0] > 0) ? POS_X : NEG_X); + } + else if (tY > tZ) + { + return ((dir[1] > 0) ? POS_Y : NEG_Y); + } + else + { + return ((dir[2] > 0) ? POS_Z : NEG_Z); + } + } + inline static double _getMinDistPOS_X( + const double origin[3], const double dir[3], const double B[6]) + { + return ((B[0] - origin[0]) / dir[0]); + } + inline static double _getMinDistNEG_X( + const double origin[3], const double dir[3], const double B[6]) + { + return ((B[1] - origin[0]) / dir[0]); + } + inline static double _getMinDistPOS_Y( + const double origin[3], const double dir[3], const double B[6]) + { + return ((B[2] - origin[1]) / dir[1]); + } + inline static double _getMinDistNEG_Y( + const double origin[3], const double dir[3], const double B[6]) + { + return ((B[3] - origin[1]) / dir[1]); + } + inline static double _getMinDistPOS_Z( + const double origin[3], const double dir[3], const double B[6]) + { + return ((B[4] - origin[2]) / dir[2]); + } + inline static double _getMinDistNEG_Z( + const double origin[3], const double dir[3], const double B[6]) + { + return ((B[5] - origin[2]) / dir[2]); + } +}; -//------------------------------------------------------------------------------ -inline vtkIdType vtkCellTreeLocator::vtkCellTreeNode::GetDimension() const +/** + * This struct is the basic building block of the cell tree. + * Nodes consist of two split planes, LeftMax and RightMin, + * one which holds all cells assigned to the left, one for the right. + * The planes may overlap in the box, but cells are only assigned + * to one side, so some searches must traverse both leaves until they have eliminated + * candidates. start is the location in the cell tree. e.g. for root node start is zero. + * size is the number of the nodes under the (sub-)tree + */ +template +struct CellTreeNode { - return this->Index & 3; -} + double LeftMax; // left max value + double RightMin; // right min value + T Index; // index of the cell + T Sz; // size + T St; // start + + /** + * b is an array containing left max and right min values + */ + inline void MakeNode(const T& left, const T& d, const double b[2]) + { + this->Index = (d & 3) | (left << 2); + this->LeftMax = b[0]; + this->RightMin = b[1]; + } + inline void SetChildren(const T& left) + { + // In index 2 LSBs (Least Significant Bits) store the dimension. MSBs store the position + this->Index = this->GetDimension() | (left << 2); + } + inline bool IsNode() const + { + return (this->Index & 3) != 3; // For a leaf 2 LSBs in index is 3 + } + inline T GetLeftChildIndex() const { return (this->Index >> 2); } + inline T GetRightChildIndex() const + { + // Right child node is adjacent to the Left child node in the data structure + return (this->Index >> 2) + 1; + } + inline T GetDimension() const { return this->Index & 3; } + inline const double& GetLeftMaxValue() const { return this->LeftMax; } + inline const double& GetRightMinValue() const { return this->RightMin; } + inline void MakeLeaf(const T& start, const T& size) + { + this->Index = 3; + this->Sz = size; + this->St = start; + } + bool IsLeaf() const { return this->Index == 3; } + const T& Start() const { return this->St; } + const T& Size() const { return this->Sz; } +}; //------------------------------------------------------------------------------ -inline const double& vtkCellTreeLocator::vtkCellTreeNode::GetLeftMaxValue() const +template +struct CellTree : public vtkCellTree { - return this->LeftMax; -} + using TCellTreeNode = CellTreeNode; + using TreeNodeStack = std::stack>; -//------------------------------------------------------------------------------ -inline const double& vtkCellTreeLocator::vtkCellTreeNode::GetRightMinValue() const -{ - return this->RightMin; -} + // For drawing coloured boxes, we want the level/depth + using BoxLevel = std::pair; + using BoxList = std::vector; + // For testing bounds of the tree we need node/box + typedef std::pair NodeBoxLevel; + typedef std::stack> NodeInfoStack; -//------------------------------------------------------------------------------ -inline void vtkCellTreeLocator::vtkCellTreeNode::MakeLeaf(vtkIdType start, vtkIdType size) -{ - this->Index = 3; - this->Sz = size; - this->St = start; -} + std::vector Nodes; + std::vector Leaves; -//------------------------------------------------------------------------------ -bool vtkCellTreeLocator::vtkCellTreeNode::IsLeaf() const -{ - return this->Index == 3; -} + CellTree(vtkCellTreeLocator* locator) + : vtkCellTree(locator) + { + } -//------------------------------------------------------------------------------ -vtkIdType vtkCellTreeLocator::vtkCellTreeNode::Start() const -{ - return this->St; -} + ~CellTree() override + { + this->Nodes.clear(); + this->Leaves.clear(); + } -//------------------------------------------------------------------------------ -vtkIdType vtkCellTreeLocator::vtkCellTreeNode::Size() const -{ - return this->Sz; -} + void Classify(const double origin[3], const double dir[3], double& rDist, + CellTreeNode*& nearNode, TCellTreeNode*& parent, TCellTreeNode*& farNode, int& mustCheck); + + // Methods to satisfy vtkCellProcessor virtual API + vtkIdType FindCell( + double pos[3], vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) override; + void FindCellsWithinBounds(double* bbox, vtkIdList* cells) override; + int IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], + double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) override; + int IntersectWithLine(const double p1[3], const double p2[3], double tol, vtkPoints* points, + vtkIdList* cellIds, vtkGenericCell* cell) override; + void GenerateRepresentation(int level, vtkPolyData* pd) override; +}; //------------------------------------------------------------------------------ -// This is a helper class to traverse the cell tree. This is derived from avtCellLocatorBIH class in -// VisIT Member variables of this class starts with m_* -class vtkCellPointTraversal +// This is a helper struct to traverse the cell tree. +// This is derived from avtCellLocatorBIH struct in VisIT. +template +struct CellPointTraversal { -private: - const vtkCellTreeLocator::vtkCellTree& m_ct; - vtkIdType m_stack[CELLTREE_MAX_DEPTH]; - vtkIdType* m_sp; // stack pointer - const double* m_pos; // 3-D coordinates of the points - vtkCellPointTraversal(const vtkCellPointTraversal&) = delete; - void operator=(vtkCellPointTraversal&) = delete; - -protected: - friend class vtkCellTreeLocator::vtkCellTree; - friend class vtkCellTreeLocator::vtkCellTreeNode; - friend class vtkCellTreeBuilder; - -public: - vtkCellPointTraversal(const vtkCellTreeLocator::vtkCellTree& ct, const double* pos) - : m_ct(ct) - , m_pos(pos) + using TCellTree = CellTree; + using TCellTreeNode = typename TCellTree::TCellTreeNode; + const TCellTree& Tree; + T Stack[CELLTREE_MAX_DEPTH]; + T* StackPtr; // stack pointer + const double* Pos; // 3-D coordinates of the points + + CellPointTraversal(const CellPointTraversal&) = delete; + void operator=(CellPointTraversal&) = delete; + + CellPointTraversal(const CellTree& tree, const double* pos) + : Tree(tree) + , Pos(pos) { - this->m_stack[0] = 0; // first element is set to zero - this->m_sp = this->m_stack + 1; // this points to the second element of the stack + this->Stack[0] = 0; // first element is set to zero + this->StackPtr = this->Stack + 1; // this points to the second element of the stack } - const vtkCellTreeLocator::vtkCellTreeNode* - Next() // this returns n (the location in the CellTree) if it is a leaf or 0 if the point doesn't - // contain in the data domain + // this returns n (the location in the CellTree) if it is a leaf or 0 if the point doesn't + // contain in the data domain + const CellTreeNode* Next() { while (true) { - if (this->m_sp == this->m_stack) // This means the point is not within the domain + if (this->StackPtr == this->Stack) // This means the point is not within the domain { return nullptr; } - const vtkCellTreeLocator::vtkCellTreeNode* n = &this->m_ct.Nodes.front() + *(--this->m_sp); + const TCellTreeNode* n = &this->Tree.Nodes.front() + *(--this->StackPtr); if (n->IsLeaf()) { return n; } - const double p = m_pos[n->GetDimension()]; - const vtkIdType left = n->GetLeftChildIndex(); + const double p = this->Pos[n->GetDimension()]; + const T left = n->GetLeftChildIndex(); - bool l = p <= n->GetLeftMaxValue(); // Check if the points is within the left sub tree - bool r = p >= n->GetRightMinValue(); // Check if the point is within the right sub tree + bool l = p <= n->GetLeftMaxValue(); // Check if the points is within the left subtree + bool r = p >= n->GetRightMinValue(); // Check if the point is within the right subtree - if (l && r) // This means if there is a overlap region both left and right sub trees should - // be traversed + // This means if there is an overlap region both left and right subtrees should + // be traversed + if (l && r) { if (n->GetLeftMaxValue() - p < p - n->GetRightMinValue()) { - *(this->m_sp++) = left; - *(this->m_sp++) = left + 1; + *(this->StackPtr++) = left; + *(this->StackPtr++) = left + 1; } else { - *(this->m_sp++) = left + 1; - *(this->m_sp++) = left; + *(this->StackPtr++) = left + 1; + *(this->StackPtr++) = left; } } else if (l) { - *(this->m_sp++) = left; + *(this->StackPtr++) = left; } else if (r) { - *(this->m_sp++) = left + 1; + *(this->StackPtr++) = left + 1; } } } @@ -212,84 +300,132 @@ public: //------------------------------------------------------------------------------ // This class builds the CellTree according to the algorithm given in the paper. -// This class is derived from the avtCellLocatorBIH class in VisIT. Member variables of this class -// starts with m_* -class vtkCellTreeBuilder +// This class is derived from the avtCellLocatorBIH class in VisIT. +template +struct CellTreeBuilder { private: struct Bucket { double Min; double Max; - vtkIdType Cnt; + T Cnt; Bucket() + : Cnt(0) + , Min(VTK_DOUBLE_MAX) + , Max(-VTK_DOUBLE_MAX) { - Cnt = 0; - Min = std::numeric_limits::max(); - Max = -std::numeric_limits::max(); } - void Add(const double _min, const double _max) + inline void Add(const double& min, const double& max) { - ++Cnt; - - if (_min < Min) + ++this->Cnt; + if (min < this->Min) { - Min = _min; + this->Min = min; } - - if (_max > Max) + if (max > this->Max) { - Max = _max; + this->Max = max; } } }; - struct PerCell + struct CellInfo { double Min[3]; double Max[3]; - vtkIdType Ind; + T Ind; }; struct CenterOrder { - vtkIdType d; - CenterOrder(vtkIdType _d) - : d(_d) + T D; + CenterOrder(const T& d) + : D(d) { } - bool operator()(const PerCell& pc0, const PerCell& pc1) + inline bool operator()(const CellInfo& pc0, const CellInfo& pc1) { - return (pc0.Min[d] + pc0.Max[d]) < (pc1.Min[d] + pc1.Max[d]); + return (pc0.Min[this->D] + pc0.Max[this->D]) < (pc1.Min[this->D] + pc1.Max[this->D]); } }; struct LeftPredicate { - vtkIdType d; - double p; - LeftPredicate(vtkIdType _d, double _p) - : d(_d) - , p(2.0f * _p) + T D; + double P; + LeftPredicate(const T& d, const double& p) + : D(d) + , P(2.0 * p) { } - bool operator()(const PerCell& pc) { return (pc.Min[d] + pc.Max[d]) < p; } + inline bool operator()(const CellInfo& pc) + { + return pc.Min[this->D] + pc.Max[this->D] < this->P; + } }; - // ------------------------------------------------------------------------- + struct SplitInfo + { + T Index; + double Min[3]; + double Max[3]; + + SplitInfo(const T& index, const double* min, const double* max) + : Index(index) + { + memcpy(this->Min, min, sizeof(double) * 3); + memcpy(this->Max, max, sizeof(double) * 3); + } + }; + + using TCellTree = CellTree; + using TCellTreeNode = typename TCellTree::TCellTreeNode; - void FindMinMax(const PerCell* begin, const PerCell* end, double* min, double* max) + vtkCellTreeLocator* Locator; + TCellTree& Tree; + vtkDataSet* DataSet; + int NumberOfBuckets; + int NumberOfNodesPerLeaf; + + std::vector CellsInfo; + std::vector> Nodes; + std::stack SplitStack; + + struct BucketsType : public std::array, 3> + { + BucketsType() = default; + + BucketsType(int numBuckets) + { + size_t numberOfBuckets = static_cast(numBuckets); + (*this)[0].resize(numberOfBuckets); + (*this)[1].resize(numberOfBuckets); + (*this)[2].resize(numberOfBuckets); + } + + void Reset() + { + std::fill((*this)[0].begin(), (*this)[0].end(), Bucket()); + std::fill((*this)[1].begin(), (*this)[1].end(), Bucket()); + std::fill((*this)[2].begin(), (*this)[2].end(), Bucket()); + } + }; + BucketsType Buckets; + + // ------------------------------------------------------------------------- + void FindMinMax(const CellInfo* begin, const CellInfo* end, double* min, double* max) { if (begin == end) { return; } - for (vtkIdType d = 0; d < 3; ++d) + for (uint8_t d = 0; d < 3; ++d) { min[d] = begin->Min[d]; max[d] = begin->Max[d]; @@ -297,102 +433,107 @@ private: while (++begin != end) { - for (vtkIdType d = 0; d < 3; ++d) + for (uint8_t d = 0; d < 3; ++d) { if (begin->Min[d] < min[d]) + { min[d] = begin->Min[d]; + } if (begin->Max[d] > max[d]) + { max[d] = begin->Max[d]; + } } } } // ------------------------------------------------------------------------- - - void Split(vtkIdType index, double min[3], double max[3]) + void Split(T index, double min[3], double max[3], BucketsType& buckets) { - vtkIdType start = this->m_nodes[index].Start(); - vtkIdType size = this->m_nodes[index].Size(); + const T& start = this->Nodes[index].Start(); + const T& size = this->Nodes[index].Size(); - if (size < this->m_leafsize) + if (size < this->NumberOfNodesPerLeaf) { return; } - PerCell* begin = &(this->m_pc[start]); - PerCell* end = this->m_pc.data() + start + size; - PerCell* mid = begin; - - const int nbuckets = 6; + CellInfo* begin = &(this->CellsInfo[start]); + CellInfo* end = this->CellsInfo.data() + start + size; + CellInfo* mid = begin; const double ext[3] = { max[0] - min[0], max[1] - min[1], max[2] - min[2] }; - const double iext[3] = { nbuckets / ext[0], nbuckets / ext[1], nbuckets / ext[2] }; + const double iext[3] = { this->NumberOfBuckets / ext[0], this->NumberOfBuckets / ext[1], + this->NumberOfBuckets / ext[2] }; + + buckets.Reset(); - Bucket b[3][nbuckets]; + double cen; + int ind; - for (const PerCell* pc = begin; pc != end; ++pc) + for (const CellInfo* pc = begin; pc != end; ++pc) { - for (vtkIdType d = 0; d < 3; ++d) + for (uint8_t d = 0; d < 3; ++d) { - double cen = (pc->Min[d] + pc->Max[d]) / 2.0f; - int ind = (int)((cen - min[d]) * iext[d]); + cen = (pc->Min[d] + pc->Max[d]) / 2.0; + ind = (int)((cen - min[d]) * iext[d]); if (ind < 0) { ind = 0; } - if (ind >= nbuckets) + if (ind >= this->NumberOfBuckets) { - ind = nbuckets - 1; + ind = this->NumberOfBuckets - 1; } - b[d][ind].Add(pc->Min[d], pc->Max[d]); + buckets[d][ind].Add(pc->Min[d], pc->Max[d]); } } - double cost = std::numeric_limits::max(); + double cost = VTK_DOUBLE_MAX; double plane = VTK_DOUBLE_MIN; // bad value in case it doesn't get setx - vtkIdType dim = VTK_INT_MAX; // bad value in case it doesn't get set + T dim = VTK_INT_MAX; // bad value in case it doesn't get set + T sum; + double lVol, rVol, c, lMaxValue, rMinValue; + int n, m; - for (vtkIdType d = 0; d < 3; ++d) + for (uint8_t d = 0; d < 3; ++d) { - vtkIdType sum = 0; + sum = 0; - for (vtkIdType n = 0; n < (vtkIdType)nbuckets - 1; ++n) + for (n = 0; n < this->NumberOfBuckets - 1; ++n) { - double lmax = -std::numeric_limits::max(); - double rmin = std::numeric_limits::max(); + lMaxValue = -VTK_DOUBLE_MAX; + rMinValue = VTK_DOUBLE_MAX; - for (vtkIdType m = 0; m <= n; ++m) + for (m = 0; m <= n; ++m) { - if (b[d][m].Max > lmax) + if (buckets[d][m].Max > lMaxValue) { - lmax = b[d][m].Max; + lMaxValue = buckets[d][m].Max; } } - for (vtkIdType m = n + 1; m < (vtkIdType)nbuckets; ++m) + for (m = n + 1; m < this->NumberOfBuckets; ++m) { - if (b[d][m].Min < rmin) + if (buckets[d][m].Min < rMinValue) { - rmin = b[d][m].Min; + rMinValue = buckets[d][m].Min; } } - // // JB : added if (...) to stop floating point error if rmin is unset // this happens when some buckets are empty (bad volume calc) - // - if (lmax != -std::numeric_limits::max() && - rmin != std::numeric_limits::max()) + if (lMaxValue != -VTK_DOUBLE_MAX && rMinValue != VTK_DOUBLE_MAX) { - sum += b[d][n].Cnt; + sum += buckets[d][n].Cnt; - double lvol = (lmax - min[d]) / ext[d]; - double rvol = (max[d] - rmin) / ext[d]; + lVol = (lMaxValue - min[d]) / ext[d]; + rVol = (max[d] - rMinValue) / ext[d]; - double c = lvol * sum + rvol * (size - sum); + c = lVol * sum + rVol * (size - sum); if (sum > 0 && sum < size && c < cost) { @@ -404,7 +545,7 @@ private: } } - if (cost != std::numeric_limits::max()) + if (cost != VTK_DOUBLE_MAX) { mid = std::partition(begin, end, LeftPredicate(dim, plane)); } @@ -418,203 +559,147 @@ private: std::nth_element(begin, mid, end, CenterOrder(dim)); } - double lmin[3], lmax[3], rmin[3], rmax[3]; + double lMin[3], lMax[3], rMin[3], rMax[3]; - FindMinMax(begin, mid, lmin, lmax); - FindMinMax(mid, end, rmin, rmax); + this->FindMinMax(begin, mid, lMin, lMax); + this->FindMinMax(mid, end, rMin, rMax); - double clip[2] = { lmax[dim], rmin[dim] }; + double clip[2] = { lMax[dim], rMin[dim] }; - vtkCellTreeLocator::vtkCellTreeNode child[2]; - child[0].MakeLeaf(begin - this->m_pc.data(), mid - begin); - child[1].MakeLeaf(mid - this->m_pc.data(), end - mid); + TCellTreeNode child[2]; + child[0].MakeLeaf(begin - this->CellsInfo.data(), mid - begin); + child[1].MakeLeaf(mid - this->CellsInfo.data(), end - mid); - this->m_nodes[index].MakeNode((int)m_nodes.size(), dim, clip); - this->m_nodes.insert(m_nodes.end(), child, child + 2); + this->Nodes[index].MakeNode(static_cast(this->Nodes.size()), dim, clip); + this->Nodes.insert(this->Nodes.end(), child, child + 2); - Split(this->m_nodes[index].GetLeftChildIndex(), lmin, lmax); - Split(this->m_nodes[index].GetRightChildIndex(), rmin, rmax); + this->SplitStack.emplace(this->Nodes[index].GetRightChildIndex(), rMin, rMax); + this->SplitStack.emplace(this->Nodes[index].GetLeftChildIndex(), lMin, lMax); } public: - vtkCellTreeBuilder() + CellTreeBuilder(vtkCellTreeLocator* locator, TCellTree& tree, vtkDataSet* dataSet, + int numberOfBuckets, int numberOfNodesPerLeaf) + : Locator(locator) + , Tree(tree) + , DataSet(dataSet) + , NumberOfBuckets(numberOfBuckets) + , NumberOfNodesPerLeaf(numberOfNodesPerLeaf) { - this->m_buckets = 5; - this->m_leafsize = 8; - } + const auto numberOfCells = static_cast(this->DataSet->GetNumberOfCells()); + this->CellsInfo.resize(static_cast(numberOfCells)); - void Build(vtkCellTreeLocator* ctl, vtkCellTreeLocator::vtkCellTree& ct, vtkDataSet* ds) - { - const vtkIdType numberOfCells = ds->GetNumberOfCells(); - this->m_pc.resize(static_cast(numberOfCells)); - - double min[3] = { std::numeric_limits::max(), std::numeric_limits::max(), - std::numeric_limits::max() }; + double min[3] = { VTK_DOUBLE_MAX, VTK_DOUBLE_MAX, VTK_DOUBLE_MAX }; double max[3] = { - -std::numeric_limits::max(), - -std::numeric_limits::max(), - -std::numeric_limits::max(), + -VTK_DOUBLE_MAX, + -VTK_DOUBLE_MAX, + -VTK_DOUBLE_MAX, }; double cellBounds[6], *cellBoundsPtr; cellBoundsPtr = cellBounds; - for (vtkIdType i = 0; i < numberOfCells; ++i) + for (T i = 0; i < numberOfCells; ++i) { - this->m_pc[i].Ind = i; - ctl->GetCellBounds(i, cellBoundsPtr); + this->CellsInfo[i].Ind = i; + this->Locator->GetCellBounds(i, cellBoundsPtr); for (uint8_t d = 0; d < 3; ++d) { - this->m_pc[i].Min[d] = cellBoundsPtr[2 * d + 0]; - this->m_pc[i].Max[d] = cellBoundsPtr[2 * d + 1]; + this->CellsInfo[i].Min[d] = cellBoundsPtr[2 * d + 0]; + this->CellsInfo[i].Max[d] = cellBoundsPtr[2 * d + 1]; - if (this->m_pc[i].Min[d] < min[d]) + if (this->CellsInfo[i].Min[d] < min[d]) { - min[d] = this->m_pc[i].Min[d]; + min[d] = this->CellsInfo[i].Min[d]; } - if (this->m_pc[i].Max[d] > max[d]) + if (this->CellsInfo[i].Max[d] > max[d]) { - max[d] = this->m_pc[i].Max[d]; + max[d] = this->CellsInfo[i].Max[d]; } } } - ct.DataBBox[0] = min[0]; - ct.DataBBox[1] = max[0]; - ct.DataBBox[2] = min[1]; - ct.DataBBox[3] = max[1]; - ct.DataBBox[4] = min[2]; - ct.DataBBox[5] = max[2]; + this->Tree.DataBBox[0] = min[0]; + this->Tree.DataBBox[1] = max[0]; + this->Tree.DataBBox[2] = min[1]; + this->Tree.DataBBox[3] = max[1]; + this->Tree.DataBBox[4] = min[2]; + this->Tree.DataBBox[5] = max[2]; - vtkCellTreeLocator::vtkCellTreeNode root; + TCellTreeNode root; root.MakeLeaf(0, numberOfCells); - this->m_nodes.push_back(root); + this->Nodes.push_back(root); + + this->SplitStack.emplace(0, min, max); + } - Split(0, min, max); + void Initialize() + { + auto& buckets = this->Buckets; + buckets = BucketsType(this->NumberOfBuckets); + } - ct.Nodes.resize(this->m_nodes.size()); - ct.Nodes[0] = this->m_nodes[0]; + void operator()() + { + auto& buckets = this->Buckets; + while (!this->SplitStack.empty()) + { + auto splitInfo = std::move(this->SplitStack.top()); + this->SplitStack.pop(); + this->Split(splitInfo.Index, splitInfo.Min, splitInfo.Max, buckets); + } + } + + void Reduce() + { + this->Tree.Nodes.resize(this->Nodes.size()); + this->Tree.Nodes[0] = this->Nodes[0]; - for (auto ni = ct.Nodes.begin(), nn = ct.Nodes.begin() + 1; ni != ct.Nodes.end(); ++ni) + for (auto ni = this->Tree.Nodes.begin(), nn = this->Tree.Nodes.begin() + 1; + ni != this->Tree.Nodes.end(); ++ni) { if (ni->IsLeaf()) { continue; } - *(nn++) = this->m_nodes[ni->GetLeftChildIndex()]; - *(nn++) = this->m_nodes[ni->GetRightChildIndex()]; - ni->SetChildren(nn - ct.Nodes.begin() - 2); + *(nn++) = this->Nodes[ni->GetLeftChildIndex()]; + *(nn++) = this->Nodes[ni->GetRightChildIndex()]; + ni->SetChildren(nn - this->Tree.Nodes.begin() - 2); } - // --- final - ct.Leaves.resize(static_cast(numberOfCells)); - for (vtkIdType i = 0; i < numberOfCells; ++i) + const auto numberOfCells = static_cast(this->DataSet->GetNumberOfCells()); + this->Tree.Leaves.resize(numberOfCells); + for (size_t i = 0; i < numberOfCells; ++i) { - ct.Leaves[i] = this->m_pc[i].Ind; + this->Tree.Leaves[i] = this->CellsInfo[i].Ind; } - this->m_pc.clear(); + this->CellsInfo.clear(); } - - vtkIdType m_buckets; - vtkIdType m_leafsize; - std::vector m_pc; - std::vector m_nodes; }; //------------------------------------------------------------------------------ -typedef std::stack> - nodeStack; - -//------------------------------------------------------------------------------ -vtkCellTreeLocator::vtkCellTreeLocator() -{ - this->NumberOfCellsPerNode = 8; - this->NumberOfBuckets = 5; - this->Tree = nullptr; -} - -//------------------------------------------------------------------------------ -vtkCellTreeLocator::~vtkCellTreeLocator() -{ - this->FreeSearchStructure(); - this->FreeCellBounds(); -} - -//------------------------------------------------------------------------------ -void vtkCellTreeLocator::BuildLocator() -{ - // don't rebuild if build time is newer than modified and dataset modified time - if (this->Tree.get() && this->BuildTime > this->MTime && - this->BuildTime > this->DataSet->GetMTime()) - { - return; - } - // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists - if (this->Tree.get() && this->UseExistingSearchStructure) - { - this->BuildTime.Modified(); - vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); - return; - } - this->BuildLocatorInternal(); -} - -//------------------------------------------------------------------------------ -void vtkCellTreeLocator::ForceBuildLocator() +template +vtkIdType CellTree::FindCell( + double* pos, vtkGenericCell* cell, int& subId, double* pcoords, double* weights) { - this->BuildLocatorInternal(); -} - -//------------------------------------------------------------------------------ -void vtkCellTreeLocator::BuildLocatorInternal() -{ - if (!this->DataSet || (this->DataSet->GetNumberOfCells() < 1)) - { - vtkErrorMacro(<< " No Cells in the data set\n"); - return; - } - this->FreeSearchStructure(); - if (this->CacheCellBounds) - { - this->FreeCellBounds(); - this->StoreCellBounds(); - } - this->Tree = std::make_shared(); - vtkCellTreeBuilder builder; - builder.m_leafsize = this->NumberOfCellsPerNode; - builder.m_buckets = this->NumberOfBuckets; - builder.Build(this, *(this->Tree), this->DataSet); - this->BuildTime.Modified(); -} - -//------------------------------------------------------------------------------ -vtkIdType vtkCellTreeLocator::FindCell( - double pos[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) -{ - this->BuildLocator(); - if (this->Tree == nullptr) - { - return -1; - } // check if pos outside of bounds - if (!vtkAbstractCellLocator::IsInBounds(this->Tree->DataBBox, pos)) + if (!this->Locator->IsInBounds(this->DataBBox, pos)) { return -1; } double dist2; - vtkCellPointTraversal pt(*(this->Tree), pos); - while (const vtkCellTreeNode* n = pt.Next()) + CellPointTraversal pt(*this, pos); + while (const TCellTreeNode* n = pt.Next()) { - const vtkIdType* begin = &(this->Tree->Leaves[n->Start()]); - const vtkIdType* end = begin + n->Size(); + const T* begin = &(this->Leaves[n->Start()]); + const T* end = begin + n->Size(); for (; begin != end; ++begin) { - if (this->InsideCellBounds(pos, *begin)) + if (this->Locator->InsideCellBounds(pos, *begin)) { this->DataSet->GetCell(*begin, cell); if (cell->EvaluatePosition(pos, nullptr, subId, pcoords, dist2, weights) == 1) @@ -629,51 +714,19 @@ vtkIdType vtkCellTreeLocator::FindCell( } //------------------------------------------------------------------------------ -namespace -{ -double _getMinDistPOS_X(const double origin[3], const double dir[3], const double B[6]) -{ - return ((B[0] - origin[0]) / dir[0]); -} -double _getMinDistNEG_X(const double origin[3], const double dir[3], const double B[6]) -{ - return ((B[1] - origin[0]) / dir[0]); -} -double _getMinDistPOS_Y(const double origin[3], const double dir[3], const double B[6]) -{ - return ((B[2] - origin[1]) / dir[1]); -} -double _getMinDistNEG_Y(const double origin[3], const double dir[3], const double B[6]) +template +int CellTree::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, + double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) { - return ((B[3] - origin[1]) / dir[1]); -} -double _getMinDistPOS_Z(const double origin[3], const double dir[3], const double B[6]) -{ - return ((B[4] - origin[2]) / dir[2]); -} -double _getMinDistNEG_Z(const double origin[3], const double dir[3], const double B[6]) -{ - return ((B[5] - origin[2]) / dir[2]); -} -} -//------------------------------------------------------------------------------ -int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, - double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) -{ - this->BuildLocator(); - if (this->Tree == nullptr) - { - return 0; - } - vtkCellTreeNode *node, *nearNode, *farNode; + TCellTreeNode *node, *nearNode, *farNode; double tmin, tmax, tDist, tHitCell, tBest = VTK_DOUBLE_MAX, xBest[3], pCoordsBest[3]; double rayDir[3], x0[3], x1[3], hitCellBoundsPosition[3]; int plane0, plane1, subIdBest = -1; vtkMath::Subtract(p2, p1, rayDir); - double* bounds = this->Tree->DataBBox; + double* bounds = this->DataBBox; double cellBounds[6], *cellBoundsPtr; cellBoundsPtr = cellBounds; - vtkIdType cId, cellIdBest = -1; + T cId, cellIdBest = -1; cellId = -1; // Does ray pass through root BBox @@ -687,34 +740,34 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); // Ok, setup a stack and various params - nodeStack ns; + TreeNodeStack ns; // setup our axis optimized ray box edge stuff - int axis = getDominantAxis(rayDir); + int axis = vtkCellTree::getDominantAxis(rayDir); double (*_getMinDist)(const double origin[3], const double dir[3], const double B[6]); switch (axis) { case POS_X: - _getMinDist = _getMinDistPOS_X; + _getMinDist = vtkCellTree::_getMinDistPOS_X; break; case NEG_X: - _getMinDist = _getMinDistNEG_X; + _getMinDist = vtkCellTree::_getMinDistNEG_X; break; case POS_Y: - _getMinDist = _getMinDistPOS_Y; + _getMinDist = vtkCellTree::_getMinDistPOS_Y; break; case NEG_Y: - _getMinDist = _getMinDistNEG_Y; + _getMinDist = vtkCellTree::_getMinDistNEG_Y; break; case POS_Z: - _getMinDist = _getMinDistPOS_Z; + _getMinDist = vtkCellTree::_getMinDistPOS_Z; break; default: - _getMinDist = _getMinDistNEG_Z; + _getMinDist = vtkCellTree::_getMinDistNEG_Z; break; } // OK, lets walk the tree and find intersections - vtkCellTreeNode* n = &this->Tree->Nodes.front(); + TCellTreeNode* n = &this->Nodes.front(); ns.push(n); while (!ns.empty()) { @@ -760,14 +813,14 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] } // Ok, so we're a leaf node, first check the BBox against the ray // then test the candidates in our sorted ray direction order - for (vtkIdType i = 0; i < node->Size(); i++) + for (T i = 0; i < node->Size(); i++) { - cId = this->Tree->Leaves[node->Start() + i]; + cId = this->Leaves[node->Start() + i]; if (!cellHasBeenVisited[cId]) { cellHasBeenVisited[cId] = true; - this->GetCellBounds(cId, cellBoundsPtr); + this->Locator->GetCellBounds(cId, cellBoundsPtr); if (_getMinDist(p1, rayDir, cellBoundsPtr) > tBest) { break; @@ -817,29 +870,27 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] } //------------------------------------------------------------------------------ +template struct IntersectionInfo { - vtkIdType CellId; + T CellId; std::array IntersectionPoint; - double T; + double TValue; - IntersectionInfo(vtkIdType cellId, double x[3], double t) + IntersectionInfo(T cellId, double x[3], double tValue) : CellId(cellId) , IntersectionPoint({ x[0], x[1], x[2] }) - , T(t) + , TValue(tValue) { } }; //------------------------------------------------------------------------------ -int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], const double tol, +template +int CellTree::IntersectWithLine(const double p1[3], const double p2[3], const double tol, vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) { - this->BuildLocator(); - if (this->Tree == nullptr) - { - return 0; - } + using TIntersectionInfo = IntersectionInfo; // Initialize the list of points/cells if (points) { @@ -849,15 +900,15 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] { cellIds->Reset(); } - vtkCellTreeNode *node, *nearNode, *farNode; + TCellTreeNode *node, *nearNode, *farNode; double tmin, tmax, tDist, tHitCell; double rayDir[3], x0[3], x1[3], hitCellBoundsPosition[3]; int plane0, plane1, subId, hitCellBounds; vtkMath::Subtract(p2, p1, rayDir); - double* bounds = this->Tree->DataBBox; + double* bounds = this->DataBBox; double cellBounds[6], *cellBoundsPtr; cellBoundsPtr = cellBounds; - vtkIdType cId; + T cId; double t, x[3], pcoords[3]; // Does ray pass through root BBox @@ -871,12 +922,12 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] std::vector cellHasBeenVisited(this->DataSet->GetNumberOfCells(), false); // Ok, setup a stack and various params - nodeStack ns; + TreeNodeStack ns; // we will sort intersections by t, so keep track using these lists - std::vector cellIntersections; + std::vector cellIntersections; // OK, lets walk the tree and find intersections - vtkCellTreeNode* n = &this->Tree->Nodes.front(); + TCellTreeNode* n = &this->Nodes.front(); ns.push(n); while (!ns.empty()) { @@ -923,15 +974,15 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] } // Ok, so we're a leaf node, first check the BBox against the ray // then test the candidates in our sorted ray direction order - for (vtkIdType i = 0; i < node->Size(); i++) + for (T i = 0; i < node->Size(); i++) { - cId = this->Tree->Leaves[node->Start() + i]; + cId = this->Leaves[node->Start() + i]; if (!cellHasBeenVisited[cId]) { cellHasBeenVisited[cId] = true; // check whether we intersect the cell bounds - this->GetCellBounds(cId, cellBoundsPtr); + this->Locator->GetCellBounds(cId, cellBoundsPtr); hitCellBounds = vtkBox::IntersectBox(cellBoundsPtr, p1, rayDir, hitCellBoundsPosition, tHitCell, tol); @@ -957,13 +1008,13 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] // if we had intersections, sort them by increasing t if (!cellIntersections.empty()) { - vtkIdType numIntersections = static_cast(cellIntersections.size()); + auto numIntersections = static_cast(cellIntersections.size()); std::sort(cellIntersections.begin(), cellIntersections.end(), - [&](const IntersectionInfo& a, const IntersectionInfo b) { return a.T < b.T; }); + [&](const TIntersectionInfo& a, const TIntersectionInfo& b) { return a.TValue < b.TValue; }); if (points) { points->SetNumberOfPoints(numIntersections); - for (vtkIdType i = 0; i < numIntersections; ++i) + for (T i = 0; i < numIntersections; ++i) { points->SetPoint(i, cellIntersections[i].IntersectionPoint.data()); } @@ -971,7 +1022,7 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] if (cellIds) { cellIds->SetNumberOfIds(numIntersections); - for (vtkIdType i = 0; i < numIntersections; ++i) + for (T i = 0; i < numIntersections; ++i) { cellIds->SetId(i, cellIntersections[i].CellId); } @@ -982,45 +1033,25 @@ int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3] } //------------------------------------------------------------------------------ -int vtkCellTreeLocator::getDominantAxis(const double dir[3]) -{ - double tX = (dir[0] > 0) ? dir[0] : -dir[0]; - double tY = (dir[1] > 0) ? dir[1] : -dir[1]; - double tZ = (dir[2] > 0) ? dir[2] : -dir[2]; - if (tX > tY && tX > tZ) - { - return ((dir[0] > 0) ? POS_X : NEG_X); - } - else if (tY > tZ) - { - return ((dir[1] > 0) ? POS_Y : NEG_Y); - } - else - { - return ((dir[2] > 0) ? POS_Z : NEG_Z); - } -} - -//------------------------------------------------------------------------------ -void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], double& rDist, - vtkCellTreeNode*& nearNode, vtkCellTreeNode*& parent, vtkCellTreeNode*& farNode, int& mustCheck) +template +void CellTree::Classify(const double origin[3], const double dir[3], double& rDist, + TCellTreeNode*& nearNode, TCellTreeNode*& parent, TCellTreeNode*& farNode, int& mustCheck) { double tOriginToDivPlane = parent->GetLeftMaxValue() - origin[parent->GetDimension()]; double tOriginToDivPlane2 = parent->GetRightMinValue() - origin[parent->GetDimension()]; double tDivDirection = dir[parent->GetDimension()]; if (tOriginToDivPlane2 > 0) // origin is right of the rmin { - nearNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex()); - farNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex() + 1); + nearNode = &this->Nodes.at(parent->GetLeftChildIndex()); + farNode = &this->Nodes.at(parent->GetLeftChildIndex() + 1); rDist = (tDivDirection) ? tOriginToDivPlane2 / tDivDirection : VTK_DOUBLE_MAX; } else if (tOriginToDivPlane < 0) // origin is left of the lm { - farNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex()); - nearNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex() + 1); + farNode = &this->Nodes.at(parent->GetLeftChildIndex()); + nearNode = &this->Nodes.at(parent->GetLeftChildIndex() + 1); rDist = (tDivDirection) ? tOriginToDivPlane / tDivDirection : VTK_DOUBLE_MAX; } - else { if (tOriginToDivPlane > 0 && tOriginToDivPlane2 < 0) @@ -1031,8 +1062,8 @@ void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], d if (tDivDirection < 0) { - nearNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex()); - farNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex() + 1); + nearNode = &this->Nodes.at(parent->GetLeftChildIndex()); + farNode = &this->Nodes.at(parent->GetLeftChildIndex() + 1); if (!(tOriginToDivPlane > 0 || tOriginToDivPlane < 0)) { mustCheck = 1; // Ray was exactly on edge left max box. @@ -1041,8 +1072,8 @@ void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], d } else { - farNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex()); - nearNode = &this->Tree->Nodes.at(parent->GetLeftChildIndex() + 1); + farNode = &this->Nodes.at(parent->GetLeftChildIndex()); + nearNode = &this->Nodes.at(parent->GetLeftChildIndex() + 1); if (!(tOriginToDivPlane2 > 0 || tOriginToDivPlane2 < 0)) { mustCheck = 1; // Ray was exactly on edge right min box. @@ -1053,22 +1084,8 @@ void vtkCellTreeLocator::Classify(const double origin[3], const double dir[3], d } //------------------------------------------------------------------------------ -void vtkCellTreeLocator::FreeSearchStructure() -{ - this->Tree.reset(); -} - -//------------------------------------------------------------------------------ -// For drawing coloured boxes, we want the level/depth -typedef std::pair boxLevel; -typedef std::vector boxlist; -// For testing bounds of the tree we need node/box -typedef std::pair nodeBoxLevel; -typedef std::stack> nodeinfostack; - -//------------------------------------------------------------------------------ -static void SplitNodeBox( - vtkCellTreeLocator::vtkCellTreeNode* n, vtkBoundingBox& b, vtkBoundingBox& l, vtkBoundingBox& r) +template +void SplitNodeBox(CellTreeNode* n, vtkBoundingBox& b, vtkBoundingBox& l, vtkBoundingBox& r) { double minpt[3], maxpt[3]; // create a box for left node @@ -1086,14 +1103,14 @@ static void SplitNodeBox( } //------------------------------------------------------------------------------ -static void AddBox(vtkPolyData* pd, double* bounds, int level) +void AddBox(vtkPolyData* pd, double* bounds, int level) { vtkPoints* pts = pd->GetPoints(); vtkCellArray* lines = pd->GetLines(); vtkIntArray* levels = vtkArrayDownCast(pd->GetPointData()->GetArray(0)); double x[3]; vtkIdType cells[8], ids[2]; - // + x[0] = bounds[0]; x[1] = bounds[2]; x[2] = bounds[4]; @@ -1126,7 +1143,7 @@ static void AddBox(vtkPolyData* pd, double* bounds, int level) x[1] = bounds[3]; x[2] = bounds[5]; cells[7] = pts->InsertNextPoint(x); - // + ids[0] = cells[0]; ids[1] = cells[1]; lines->InsertNextCell(2, ids); @@ -1163,9 +1180,7 @@ static void AddBox(vtkPolyData* pd, double* bounds, int level) ids[0] = cells[3]; ids[1] = cells[7]; lines->InsertNextCell(2, ids); - // // Colour boxes by scalar if array present - // for (int i = 0; levels && i < 8; i++) { levels->InsertNextTuple1(level); @@ -1173,29 +1188,25 @@ static void AddBox(vtkPolyData* pd, double* bounds, int level) } //------------------------------------------------------------------------------ -void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) +template +void CellTree::GenerateRepresentation(int level, vtkPolyData* pd) { - this->BuildLocator(); - if (this->Tree == nullptr) - { - return; - } - nodeinfostack ns; - boxlist bl; - // - vtkCellTreeNode* n0 = &this->Tree->Nodes.front(); + NodeInfoStack ns; + BoxList bl; + + TCellTreeNode* n0 = &this->Nodes.front(); // create a box for the root - double* DataBBox = this->Tree->DataBBox; + double* dataBBox = this->DataBBox; vtkBoundingBox lbox, rbox, - rootbox(DataBBox[0], DataBBox[1], DataBBox[2], DataBBox[3], DataBBox[4], DataBBox[5]); - ns.push(nodeBoxLevel(n0, boxLevel(rootbox, 0))); + rootbox(dataBBox[0], dataBBox[1], dataBBox[2], dataBBox[3], dataBBox[4], dataBBox[5]); + ns.push(NodeBoxLevel(n0, BoxLevel(rootbox, 0))); while (!ns.empty()) { n0 = ns.top().first; int lev = ns.top().second.second; if (n0->IsLeaf() && ((lev == level) || (level == -1))) { - bl.push_back(boxLevel(ns.top().second.first, lev)); + bl.push_back(BoxLevel(ns.top().second.first, lev)); ns.pop(); } else if (n0->IsLeaf()) @@ -1205,11 +1216,11 @@ void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) else if (n0->IsNode()) { SplitNodeBox(n0, ns.top().second.first, lbox, rbox); - vtkCellTreeNode* n1 = &this->Tree->Nodes.at(n0->GetLeftChildIndex()); - vtkCellTreeNode* n2 = &this->Tree->Nodes.at(n0->GetLeftChildIndex() + 1); + TCellTreeNode* n1 = &this->Nodes.at(n0->GetLeftChildIndex()); + TCellTreeNode* n2 = &this->Nodes.at(n0->GetLeftChildIndex() + 1); ns.pop(); - ns.push(nodeBoxLevel(n1, boxLevel(lbox, lev + 1))); - ns.push(nodeBoxLevel(n2, boxLevel(rbox, lev + 1))); + ns.push(NodeBoxLevel(n1, BoxLevel(lbox, lev + 1))); + ns.push(NodeBoxLevel(n2, BoxLevel(rbox, lev + 1))); } } // For each node, add the bbox to our polydata @@ -1222,24 +1233,20 @@ void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) } //------------------------------------------------------------------------------ -void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) +template +void CellTree::FindCellsWithinBounds(double* bbox, vtkIdList* cells) { - this->BuildLocator(); - if (this->Tree == nullptr) - { - return; - } - nodeinfostack ns; + NodeInfoStack ns; double cellBounds[6], *cellBoundsPtr; cellBoundsPtr = cellBounds; vtkBoundingBox TestBox(bbox); - vtkCellTreeNode* n0 = &this->Tree->Nodes.front(); + TCellTreeNode* n0 = &this->Nodes.front(); // create a box for the root - double* DataBBox = this->Tree->DataBBox; + double* dataBBox = this->DataBBox; vtkBoundingBox lbox, rbox, - rootbox(DataBBox[0], DataBBox[1], DataBBox[2], DataBBox[3], DataBBox[4], DataBBox[5]); - ns.push(nodeBoxLevel(n0, boxLevel(rootbox, 0))); + rootbox(dataBBox[0], dataBBox[1], dataBBox[2], dataBBox[3], dataBBox[4], dataBBox[5]); + ns.push(NodeBoxLevel(n0, BoxLevel(rootbox, 0))); while (!ns.empty()) { n0 = ns.top().first; @@ -1248,14 +1255,14 @@ void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) { if (n0->IsLeaf()) { - for (int i = 0; i < (int)n0->Size(); i++) + for (T i = 0; i < n0->Size(); i++) { - vtkIdType cell_ID = this->Tree->Leaves[n0->Start() + i]; - this->GetCellBounds(cell_ID, cellBoundsPtr); + T cellId = this->Leaves[n0->Start() + i]; + this->Locator->GetCellBounds(cellId, cellBoundsPtr); vtkBoundingBox box(cellBoundsPtr); if (TestBox.Intersects(box)) { - cells->InsertNextId(cell_ID); + cells->InsertNextId(cellId); } } ns.pop(); @@ -1264,11 +1271,11 @@ void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) { int lev = ns.top().second.second; SplitNodeBox(n0, nodebox, lbox, rbox); - vtkCellTreeNode* n1 = &this->Tree->Nodes.at(n0->GetLeftChildIndex()); - vtkCellTreeNode* n2 = &this->Tree->Nodes.at(n0->GetLeftChildIndex() + 1); + TCellTreeNode* n1 = &this->Nodes.at(n0->GetLeftChildIndex()); + TCellTreeNode* n2 = &this->Nodes.at(n0->GetLeftChildIndex() + 1); ns.pop(); - ns.push(nodeBoxLevel(n1, boxLevel(lbox, lev + 1))); - ns.push(nodeBoxLevel(n2, boxLevel(rbox, lev + 1))); + ns.push(NodeBoxLevel(n1, BoxLevel(lbox, lev + 1))); + ns.push(NodeBoxLevel(n2, BoxLevel(rbox, lev + 1))); } } else @@ -1277,10 +1284,162 @@ void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) } } } +} // namespace + +//------------------------------------------------------------------------------ +vtkCellTreeLocator::vtkCellTreeLocator() +{ + this->NumberOfCellsPerNode = 8; + this->NumberOfBuckets = 6; + this->Tree = nullptr; +} + +//------------------------------------------------------------------------------ +vtkCellTreeLocator::~vtkCellTreeLocator() +{ + this->FreeSearchStructure(); + this->FreeCellBounds(); +} + +//------------------------------------------------------------------------------ +void vtkCellTreeLocator::FreeSearchStructure() +{ + if (this->Tree) + { + delete this->Tree; + this->Tree = nullptr; + } +} + +//------------------------------------------------------------------------------ +void vtkCellTreeLocator::BuildLocator() +{ + // don't rebuild if build time is newer than modified and dataset modified time + if (this->Tree && this->BuildTime > this->MTime && this->BuildTime > this->DataSet->GetMTime()) + { + return; + } + // don't rebuild if UseExistingSearchStructure is ON and a search structure already exists + if (this->Tree && this->UseExistingSearchStructure) + { + this->BuildTime.Modified(); + vtkDebugMacro(<< "BuildLocator exited - UseExistingSearchStructure"); + return; + } + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkCellTreeLocator::ForceBuildLocator() +{ + this->BuildLocatorInternal(); +} + +//------------------------------------------------------------------------------ +void vtkCellTreeLocator::BuildLocatorInternal() +{ + using namespace detail; + vtkIdType numCells; + if (!this->DataSet || (numCells = this->DataSet->GetNumberOfCells() < 1)) + { + vtkErrorMacro(<< " No Cells in the data set\n"); + return; + } + this->FreeSearchStructure(); + if (this->CacheCellBounds) + { + this->FreeCellBounds(); + this->StoreCellBounds(); + } + // Create sorted cell fragments tuples of (cellId,binId). Depending + // on problem size, different types are used. + if (numCells >= VTK_INT_MAX) + { + this->LargeIds = true; + auto tree = new CellTree(this); + CellTreeBuilder treeBuilder( + this, *tree, this->DataSet, this->NumberOfBuckets, this->NumberOfCellsPerNode); + treeBuilder.Initialize(); + treeBuilder(); + treeBuilder.Reduce(); + this->Tree = tree; + } + else + { + this->LargeIds = false; + auto tree = new CellTree(this); + CellTreeBuilder treeBuilder( + this, *tree, this->DataSet, this->NumberOfBuckets, this->NumberOfCellsPerNode); + treeBuilder.Initialize(); + treeBuilder(); + treeBuilder.Reduce(); + this->Tree = tree; + } + this->BuildTime.Modified(); +} + +//------------------------------------------------------------------------------ +vtkIdType vtkCellTreeLocator::FindCell( + double pos[3], double, vtkGenericCell* cell, int& subId, double pcoords[3], double* weights) +{ + this->BuildLocator(); + if (!this->Tree) + { + return -1; + } + return this->Tree->FindCell(pos, cell, subId, pcoords, weights); +} + +//------------------------------------------------------------------------------ +void vtkCellTreeLocator::FindCellsWithinBounds(double* bbox, vtkIdList* cells) +{ + this->BuildLocator(); + if (!this->Tree) + { + return; + } + return this->Tree->FindCellsWithinBounds(bbox, cells); +} + +//------------------------------------------------------------------------------ +int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, + double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) +{ + this->BuildLocator(); + if (!this->Tree) + { + return 0; + } + return this->Tree->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId, cellId, cell); +} + +//------------------------------------------------------------------------------ +int vtkCellTreeLocator::IntersectWithLine(const double p1[3], const double p2[3], double tol, + vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) +{ + this->BuildLocator(); + if (!this->Tree) + { + return 0; + } + return this->Tree->IntersectWithLine(p1, p2, tol, points, cellIds, cell); +} + +//------------------------------------------------------------------------------ +void vtkCellTreeLocator::GenerateRepresentation(int level, vtkPolyData* pd) +{ + this->BuildLocator(); + if (!this->Tree) + { + return; + } + this->Tree->GenerateRepresentation(level, pd); +} //------------------------------------------------------------------------------ void vtkCellTreeLocator::ShallowCopy(vtkAbstractCellLocator* locator) { + using namespace detail; vtkCellTreeLocator* cellLocator = vtkCellTreeLocator::SafeDownCast(locator); if (!cellLocator) { @@ -1301,11 +1460,35 @@ void vtkCellTreeLocator::ShallowCopy(vtkAbstractCellLocator* locator) // vtkCellTreeLocator parameters this->NumberOfBuckets = cellLocator->NumberOfBuckets; - this->Tree = cellLocator->Tree; + this->LargeIds = cellLocator->LargeIds; + if (this->LargeIds) + { + auto cellLocatorTree = static_cast*>(cellLocator->Tree); + auto tree = new CellTree(this); + tree->Locator = this; + tree->DataSet = cellLocatorTree->DataSet; + tree->Leaves = cellLocatorTree->Leaves; + tree->Nodes = cellLocatorTree->Nodes; + std::copy_n(cellLocatorTree->DataBBox, 6, tree->DataBBox); + this->Tree = tree; + } + else + { + auto cellLocatorTree = static_cast*>(cellLocator->Tree); + auto tree = new CellTree(this); + tree->Locator = this; + tree->DataSet = cellLocatorTree->DataSet; + tree->Leaves = cellLocatorTree->Leaves; + tree->Nodes = cellLocatorTree->Nodes; + std::copy_n(cellLocatorTree->DataBBox, 6, tree->DataBBox); + this->Tree = tree; + } } //------------------------------------------------------------------------------ void vtkCellTreeLocator::PrintSelf(ostream& os, vtkIndent indent) { this->Superclass::PrintSelf(os, indent); + os << indent << "NumberOfBuckets: " << this->NumberOfBuckets << "\n"; + os << indent << "LargeIds: " << this->LargeIds << "\n"; } diff --git a/Common/DataModel/vtkCellTreeLocator.h b/Common/DataModel/vtkCellTreeLocator.h index 72031864ec0e..c360988e1d48 100644 --- a/Common/DataModel/vtkCellTreeLocator.h +++ b/Common/DataModel/vtkCellTreeLocator.h @@ -37,6 +37,10 @@ * - Tolerance * - RetainCellLists * + * @warning + * This class is templated. It may run slower than serial execution if the code + * is not optimized during compilation. Build in Release or ReleaseWithDebugInfo. + * * From the article: "Fast, Memory-Efficient Cell location in Unstructured Grids for Visualization" * by Christoph Garth and Kenneth I. Joy in VisWeek, 2011. * @@ -51,14 +55,23 @@ #include "vtkCommonDataModelModule.h" // For export macro #include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 -#include // Needed for internal class - -class vtkCellPointTraversal; -class vtkIdTypeArray; -class vtkCellArray; +namespace detail +{ +// Forward declarations for PIMPL +struct vtkCellTree; +template +struct CellTree; +template +struct CellTreeBuilder; +} class VTKCOMMONDATAMODEL_EXPORT vtkCellTreeLocator : public vtkAbstractCellLocator { + template + friend struct detail::CellTree; + template + friend struct detail::CellTreeBuilder; + public: ///@{ /** @@ -69,20 +82,30 @@ public: ///@} /** - * Constructor sets the maximum number of cells in a leaf to 8 - * and number of buckets to 5. Buckets are used in building the cell tree as described in the - * paper + * Constructor sets the maximum number of cells in a leaf to 8 and number of buckets to 6. + * Buckets are used in building the cell tree as described in the paper. */ static vtkCellTreeLocator* New(); ///@{ /** * Set/Get the number of buckets. + * + * Default is 6. */ vtkSetMacro(NumberOfBuckets, int); vtkGetMacro(NumberOfBuckets, int); ///@} + /** + * Inform the user as to whether large ids are being used. This flag only + * has meaning after the locator has been built. Large ids are used when the + * number of binned points, or the number of bins, is >= the maximum number + * of buckets (specified by the user). Note that LargeIds are only available + * on 64-bit architectures. + */ + bool GetLargeIds() { return this->LargeIds; } + // Re-use any superclass signatures that we don't override. using vtkAbstractCellLocator::FindCell; using vtkAbstractCellLocator::IntersectWithLine; @@ -147,64 +170,6 @@ public: VTK_DEPRECATED_IN_9_2_0("This method is deprecated because LazyEvaluation has been deprecated") virtual void BuildLocatorIfNeeded() {} - class vtkCellTree; - class vtkCellTreeNode; - /** - * Internal classes made public to allow subclasses to create - * customized some traversal algorithms - */ - class VTKCOMMONDATAMODEL_EXPORT vtkCellTree - { - public: - std::vector Nodes; - std::vector Leaves; - friend class vtkCellPointTraversal; - friend class vtkCellTreeNode; - friend class vtkCellTreeBuilder; - - public: - double DataBBox[6]; // This store the bounding values of the dataset - }; - - /** - * This class is the basic building block of the cell tree. - * Nodes consist of two split planes, LeftMax and RightMin, - * one which holds all cells assigned to the left, one for the right. - * The planes may overlap in the box, but cells are only assigned - * to one side, so some searches must traverse both leaves until they have eliminated - * candidates. - * start is the location in the cell tree. e.g. for root node start is zero. - * size is the number of the nodes under the (sub-)tree - */ - class VTKCOMMONDATAMODEL_EXPORT vtkCellTreeNode - { - public: - protected: - vtkIdType Index; - double LeftMax; // left max value - double RightMin; // right min value - - vtkIdType Sz; // size - vtkIdType St; // start - - friend class vtkCellPointTraversal; - friend class vtkCellTreeBuilder; - - public: - void MakeNode(vtkIdType left, vtkIdType d, double b[2]); - void SetChildren(vtkIdType left); - bool IsNode() const; - vtkIdType GetLeftChildIndex() const; - vtkIdType GetRightChildIndex() const; - vtkIdType GetDimension() const; - const double& GetLeftMaxValue() const; - const double& GetRightMinValue() const; - void MakeLeaf(vtkIdType start, vtkIdType size); - bool IsLeaf() const; - vtkIdType Start() const; - vtkIdType Size() const; - }; - /** * Shallow copy of a vtkCellTreeLocator. */ @@ -216,19 +181,10 @@ protected: void BuildLocatorInternal() override; - int getDominantAxis(const double dir[3]); - - // Order nodes as near/far relative to ray - void Classify(const double origin[3], const double dir[3], double& rDist, vtkCellTreeNode*& near, - vtkCellTreeNode*& mid, vtkCellTreeNode*& far, int& mustCheck); - int NumberOfBuckets; + bool LargeIds = false; - std::shared_ptr Tree; - - friend class vtkCellPointTraversal; - friend class vtkCellTreeNode; - friend class vtkCellTreeBuilder; + detail::vtkCellTree* Tree; private: vtkCellTreeLocator(const vtkCellTreeLocator&) = delete; diff --git a/Common/DataModel/vtkStaticCellLocator.cxx b/Common/DataModel/vtkStaticCellLocator.cxx index 0d86b5272734..6876f27a95e2 100644 --- a/Common/DataModel/vtkStaticCellLocator.cxx +++ b/Common/DataModel/vtkStaticCellLocator.cxx @@ -776,7 +776,7 @@ int CellProcessor::IntersectWithLine(const double p1[3], const double p2[3], { T numIntersections = static_cast(cellIntersections.size()); std::sort(cellIntersections.begin(), cellIntersections.end(), - [&](const IntersectionInfo& a, const IntersectionInfo b) { return a.T < b.T; }); + [&](const IntersectionInfo& a, const IntersectionInfo& b) { return a.T < b.T; }); if (points) { points->SetNumberOfPoints(numIntersections); diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.cxx b/Filters/FlowPaths/vtkModifiedBSPTree.cxx index 3b6910221e51..efe5b2b68b5d 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.cxx +++ b/Filters/FlowPaths/vtkModifiedBSPTree.cxx @@ -913,7 +913,7 @@ int vtkModifiedBSPTree::IntersectWithLine(const double p1[3], const double p2[3] { vtkIdType numIntersections = static_cast(cellIntersections.size()); std::sort(cellIntersections.begin(), cellIntersections.end(), - [&](const IntersectionInfo& a, const IntersectionInfo b) { return a.T < b.T; }); + [&](const IntersectionInfo& a, const IntersectionInfo& b) { return a.T < b.T; }); if (points) { points->SetNumberOfPoints(numIntersections); -- GitLab From c868bb2920b9544bc938a7cdcfe2c0a18e972de7 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Wed, 18 May 2022 00:01:44 -0400 Subject: [PATCH 0217/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 8923438f40d4..2ee0577e1079 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220517) +set(VTK_BUILD_VERSION 20220518) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 7ea21ce3c16a8a91a16e05a7d2e5cd6bc0de4a46 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Wed, 18 May 2022 10:03:50 +0200 Subject: [PATCH 0218/1015] Fixup vtkInteractorEventRecorder sanity check --- Rendering/Core/vtkInteractorEventRecorder.cxx | 12 ++---------- 1 file changed, 2 insertions(+), 10 deletions(-) diff --git a/Rendering/Core/vtkInteractorEventRecorder.cxx b/Rendering/Core/vtkInteractorEventRecorder.cxx index c272b53123e9..eaa894b718d6 100644 --- a/Rendering/Core/vtkInteractorEventRecorder.cxx +++ b/Rendering/Core/vtkInteractorEventRecorder.cxx @@ -363,17 +363,9 @@ void vtkInteractorEventRecorder::WriteEvent(const char* event, int pos[2], int m // This should go into its own method once more events are supported vtkStringArray* filesArr = static_cast(callData); - // Sanity check - if (!filesArr) - { - *this->OutputStream << "0 "; - return; - } - - vtkIdType dataNum = filesArr->GetNumberOfValues(); - + // Recover the number of string, with a sanity check + vtkIdType dataNum = filesArr ? filesArr->GetNumberOfValues() : 0; *this->OutputStream << dataNum << " "; - if (dataNum > 0) { for (vtkIdType i = 0; i < dataNum; i++) -- GitLab From ad86881722658ea840fb4f0040f7f7a847a823d9 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Wed, 18 May 2022 12:50:54 -0400 Subject: [PATCH 0219/1015] vtkModule: fix subdirectory calculations The build directory needs a different variable; the source directory should not be the same in the situations where the `if` is necessary. --- CMake/vtkModule.cmake | 18 ++++++++++-------- 1 file changed, 10 insertions(+), 8 deletions(-) diff --git a/CMake/vtkModule.cmake b/CMake/vtkModule.cmake index f240ab9928f7..a6ab1b2db2a7 100644 --- a/CMake/vtkModule.cmake +++ b/CMake/vtkModule.cmake @@ -2631,19 +2631,20 @@ function (vtk_module_build) get_filename_component(_vtk_build_module_dir "${_vtk_build_module_file}" DIRECTORY) file(RELATIVE_PATH _vtk_build_module_subdir "${CMAKE_SOURCE_DIR}" "${_vtk_build_module_dir}") + set(_vtk_build_module_subdir_build "${_vtk_build_module_subdir}") # Check if the source for this module is outside of `CMAKE_SOURCE_DIR`. # Place it under `CMAKE_BINARY_DIR` more meaningfully if so. - if (_vtk_build_module_dir MATCHES "\\.\\./") - file(RELATIVE_PATH _vtk_build_module_subdir "${CMAKE_BINARY_DIR}" "${CMAKE_CURRENT_BINARY_DIR}") + if (_vtk_build_module_subdir MATCHES "\\.\\./") + file(RELATIVE_PATH _vtk_build_module_subdir_build "${CMAKE_BINARY_DIR}" "${CMAKE_CURRENT_BINARY_DIR}") get_property(_vtk_build_module_library_name GLOBAL PROPERTY "_vtk_module_${_vtk_build_module}_library_name") - string(APPEND _vtk_build_module_subdir "/${_vtk_build_module_library_name}") + string(APPEND _vtk_build_module_subdir_build "/${_vtk_build_module_library_name}") endif () add_subdirectory( "${CMAKE_SOURCE_DIR}/${_vtk_build_module_subdir}" - "${CMAKE_BINARY_DIR}/${_vtk_build_module_subdir}") + "${CMAKE_BINARY_DIR}/${_vtk_build_module_subdir_build}") if (NOT TARGET "${_vtk_build_module}") message(FATAL_ERROR @@ -2916,21 +2917,22 @@ function (vtk_module_build) if (NOT _vtk_build_TEST_DIRECTORY_NAME STREQUAL "NONE") get_filename_component(_vtk_build_module_dir "${_vtk_build_module_file}" DIRECTORY) file(RELATIVE_PATH _vtk_build_module_subdir "${CMAKE_SOURCE_DIR}" "${_vtk_build_module_dir}") + set(_vtk_build_module_subdir_build "${_vtk_build_module_subdir}") if (EXISTS "${CMAKE_SOURCE_DIR}/${_vtk_build_module_subdir}/${_vtk_build_TEST_DIRECTORY_NAME}") # Check if the source for this module is outside of `CMAKE_SOURCE_DIR`. # Place it under `CMAKE_BINARY_DIR` more meaningfully if so. - if (_vtk_build_module_dir MATCHES "\\.\\./") - file(RELATIVE_PATH _vtk_build_module_subdir "${CMAKE_BINARY_DIR}" "${CMAKE_CURRENT_BINARY_DIR}") + if (_vtk_build_module_subdir MATCHES "\\.\\./") + file(RELATIVE_PATH _vtk_build_module_subdir_build "${CMAKE_BINARY_DIR}" "${CMAKE_CURRENT_BINARY_DIR}") get_property(_vtk_build_module_library_name GLOBAL PROPERTY "_vtk_module_${_vtk_build_test}_library_name") - string(APPEND _vtk_build_module_subdir "/${_vtk_build_module_library_name}") + string(APPEND _vtk_build_module_subdir_build "/${_vtk_build_module_library_name}") endif () get_property(_vtk_build_test_labels GLOBAL PROPERTY "_vtk_module_${_vtk_build_test}_test_labels") add_subdirectory( "${CMAKE_SOURCE_DIR}/${_vtk_build_module_subdir}/${_vtk_build_TEST_DIRECTORY_NAME}" - "${CMAKE_BINARY_DIR}/${_vtk_build_module_subdir}/${_vtk_build_TEST_DIRECTORY_NAME}") + "${CMAKE_BINARY_DIR}/${_vtk_build_module_subdir_build}/${_vtk_build_TEST_DIRECTORY_NAME}") endif () endif () endforeach () -- GitLab From 8e487c319d2704dd8ea687f77a28f2b6f74a6ea4 Mon Sep 17 00:00:00 2001 From: Will Schroeder Date: Wed, 18 May 2022 14:14:03 -0400 Subject: [PATCH 0220/1015] Delegate to vtkPolyDataPlaneCutter The filter will delegate to vtkPolyDataPlaneCutter when the input polydata contains convex polygonal cells. --- Filters/Core/vtkPlaneCutter.cxx | 11 ++++++++++- Filters/Core/vtkPlaneCutter.h | 11 ++++++++--- Filters/Core/vtkPolyDataPlaneCutter.cxx | 7 +++++++ Filters/Core/vtkPolyDataPlaneCutter.h | 11 +++++++++++ 4 files changed, 36 insertions(+), 4 deletions(-) diff --git a/Filters/Core/vtkPlaneCutter.cxx b/Filters/Core/vtkPlaneCutter.cxx index 0ed6a87ed0dd..3ebb92a1450e 100644 --- a/Filters/Core/vtkPlaneCutter.cxx +++ b/Filters/Core/vtkPlaneCutter.cxx @@ -1863,7 +1863,9 @@ int vtkPlaneCutter::ExecuteDataSet(vtkDataSet* input, vtkSphereTree* tree, vtkPo plane->GetTransform()->TransformPoint(planeOrigin, planeOrigin); } - // Delegate the processing to the matching algorithm + // Delegate the processing to the matching algorithm. If the input data is vtkImageData, + // then delegation to vtkFlyingEdgesPlaneCutter. If the input data is vtkPolyData, and + // the input cells are convex polygons, then delegate to vtkPolyDataPlaneCutter. if (vtkImageData::SafeDownCast(input)) { vtkDataSet* tmpInput = input; @@ -1912,6 +1914,13 @@ int vtkPlaneCutter::ExecuteDataSet(vtkDataSet* input, vtkSphereTree* tree, vtkPo return 1; } + // Check whether we have convex, vtkPolyData cells. Cache the computation + // of convexity so it only needs be done once if the input does not change. + if (vtkPolyData::SafeDownCast(input)) + { + } + + // If here, then we use more general methods to produce the cut. // Prepare the output if (tree) { diff --git a/Filters/Core/vtkPlaneCutter.h b/Filters/Core/vtkPlaneCutter.h index 54ec38c4783b..52512258e9e1 100644 --- a/Filters/Core/vtkPlaneCutter.h +++ b/Filters/Core/vtkPlaneCutter.h @@ -46,15 +46,20 @@ * 5) if input is vtkMultiBlockDataSet, output is vtkMultiBlockDataSet. * * @warning - * This filter produces non-merged, potentially coincident points for all - * input dataset types except vtkImageData (which uses - * vtkFlyingEdgesPlaneCutter under the hood - which does merge points). + * This filter produces may produce non-merged, potentially coincident points + * for all input dataset types except 1) vtkImageData (which uses + * vtkFlyingEdgesPlaneCutter under the hood - which does merge points); and + * 2) vtkPolyData if all input cells are convex polygons. * * @warning * This filter delegates to vtkFlyingEdgesPlaneCutter to process image * data, but output and input have been standardized when possible. * * @warning + * This filter delegates to vtkPolyDataPlaneCutter to process input + * vtkPolyData if all the input cells are convex polygons. + * + * @warning * This class has been threaded with vtkSMPTools. Using TBB or other * non-sequential type (set in the CMake variable * VTK_SMP_IMPLEMENTATION_TYPE) may improve performance significantly. diff --git a/Filters/Core/vtkPolyDataPlaneCutter.cxx b/Filters/Core/vtkPolyDataPlaneCutter.cxx index ad4e1fef8fe8..639a8826ae83 100644 --- a/Filters/Core/vtkPolyDataPlaneCutter.cxx +++ b/Filters/Core/vtkPolyDataPlaneCutter.cxx @@ -625,6 +625,13 @@ int vtkPolyDataPlaneCutter::RequestData(vtkInformation* vtkNotUsed(request), return 1; } +//------------------------------------------------------------------------------ +// Assess whether this data object can be processed by this filter. +bool vtkPolyDataPlaneCutter::CanFullyProcessDataObject(vtkDataObject* object) +{ + return true; +} + //------------------------------------------------------------------------------ void vtkPolyDataPlaneCutter::PrintSelf(ostream& os, vtkIndent indent) { diff --git a/Filters/Core/vtkPolyDataPlaneCutter.h b/Filters/Core/vtkPolyDataPlaneCutter.h index a8f005b4d02e..191768621956 100644 --- a/Filters/Core/vtkPolyDataPlaneCutter.h +++ b/Filters/Core/vtkPolyDataPlaneCutter.h @@ -95,6 +95,17 @@ public: vtkGetMacro(BatchSize, unsigned int); ///@} + /** + * This helper method can be used to determine the if the input vtkPolyData + * contains convex polygonal cells, and therefore is suitable for + * processing by this filter. (The name of the method is consistent with + * other filters that perform similar operations.) This method returns true + * when the input contains only polygons (i.e., no verts, lines, or + * triangle strips); and each polygon is convex. It returns false + * otherwise. + */ + static bool CanFullyProcessDataObject(vtkDataObject* object); + protected: vtkPolyDataPlaneCutter(); ~vtkPolyDataPlaneCutter() override; -- GitLab From a96642c9f1a6e79396a7239602037f44b7ede060 Mon Sep 17 00:00:00 2001 From: Will Schroeder Date: Wed, 18 May 2022 04:32:09 -0400 Subject: [PATCH 0221/1015] Added test; improved documentation; use vtkNew Added a test that shows how to use the method TriangulateContours and made some small improvements to the documentation. Now uses vtkNew. --- .../TestTriangulateContours.png.sha512 | 1 + Filters/General/Testing/Python/CMakeLists.txt | 1 + .../Testing/Python/TestTriangulateContours.py | 92 +++++++++++++++++++ Filters/General/vtkClipClosedSurface.h | 8 ++ Filters/General/vtkContourTriangulator.cxx | 11 +-- Filters/General/vtkContourTriangulator.h | 40 +++++--- 6 files changed, 132 insertions(+), 21 deletions(-) create mode 100644 Filters/General/Testing/Data/Baseline/TestTriangulateContours.png.sha512 create mode 100755 Filters/General/Testing/Python/TestTriangulateContours.py diff --git a/Filters/General/Testing/Data/Baseline/TestTriangulateContours.png.sha512 b/Filters/General/Testing/Data/Baseline/TestTriangulateContours.png.sha512 new file mode 100644 index 000000000000..e80f44cb6c51 --- /dev/null +++ b/Filters/General/Testing/Data/Baseline/TestTriangulateContours.png.sha512 @@ -0,0 +1 @@ +3b4d05304839d8236dfd191bc7af83bc1001ecb763064258a7597c4b353f4c31fe305de6a631e62df8bafceba9c67b8c7e2ec89d776070263de5993ab645f129 diff --git a/Filters/General/Testing/Python/CMakeLists.txt b/Filters/General/Testing/Python/CMakeLists.txt index 62dd2f169f79..5393865909f9 100644 --- a/Filters/General/Testing/Python/CMakeLists.txt +++ b/Filters/General/Testing/Python/CMakeLists.txt @@ -29,6 +29,7 @@ vtk_add_test_python( TestStaticCellLocator.py TestStaticCellLocatorPlaneIntersection.py TestSynchronizeTimeFilter.py,NO_OUTPUT,NO_VALID + TestTriangulateContours.py TestWarpScalar.py,NO_VALID TestWarpVector.py,NO_VALID WarpToImage.py diff --git a/Filters/General/Testing/Python/TestTriangulateContours.py b/Filters/General/Testing/Python/TestTriangulateContours.py new file mode 100755 index 000000000000..f849763e41dd --- /dev/null +++ b/Filters/General/Testing/Python/TestTriangulateContours.py @@ -0,0 +1,92 @@ +#!/usr/bin/env python +import vtk +from vtk.util.misc import vtkGetDataRoot + +# The purpose of the test is to show how to use +# vtkContourTriangulator::TriangulateContours method. + +# Manually create polygons; some have internal holes. +pts = vtk.vtkPoints() +pts.SetNumberOfPoints(12) +pts.SetPoint(0, 0,0,0) +pts.SetPoint(1, 10,0,0) +pts.SetPoint(2, 10,10,0) +pts.SetPoint(3, 0,10,0) +pts.SetPoint(4, 2,2,0) +pts.SetPoint(5, 8,2,0) +pts.SetPoint(6, 8,8,0) +pts.SetPoint(7, 2,8,0) +pts.SetPoint(8, 12,0,0) +pts.SetPoint(9, 22,0,0) +pts.SetPoint(10, 22,10,0) +pts.SetPoint(11, 12,10,0) + +# Outer loop +loops = vtk.vtkCellArray() +conn = [0,1] +loops.InsertNextCell(2,conn) +conn = [1,2] +loops.InsertNextCell(2,conn) +conn = [2,3] +loops.InsertNextCell(2,conn) +conn = [3,0] +loops.InsertNextCell(2,conn) + +# Inner loop - reverse ordering (i.e., flipped normal) +conn = [5,4] +loops.InsertNextCell(2,conn) +conn = [6,5] +loops.InsertNextCell(2,conn) +conn = [7,6] +loops.InsertNextCell(2,conn) +conn = [4,7] +loops.InsertNextCell(2,conn) + +# Another loop disjoint from first two +conn = [8,9] +loops.InsertNextCell(2,conn) +conn = [9,10] +loops.InsertNextCell(2,conn) +conn = [10,11] +loops.InsertNextCell(2,conn) +conn = [11,8] +loops.InsertNextCell(2,conn) + +pd = vtk.vtkPolyData() +pd.SetPoints(pts) +pd.SetLines(loops) + +# Now triangulate +normal = [0,0,1] +outputCA = vtk.vtkCellArray() +ct = vtk.vtkContourTriangulator() +ct.TriangulateContours(pd,0,12,outputCA,normal) + +outPD = vtk.vtkPolyData() +outPD.SetPoints(pts) +outPD.SetPolys(outputCA) + +mapper = vtk.vtkPolyDataMapper() +mapper.SetInputData(outPD) + +actor = vtk.vtkActor() +actor.SetMapper(mapper) + +# Graphics objects +ren1 = vtk.vtkRenderer() +ren1.SetBackground(0,0,0) +ren1.AddActor(actor) +ren1.ResetCamera() + +renWin = vtk.vtkRenderWindow() +renWin.AddRenderer(ren1) +renWin.SetSize(300,300) + +iren = vtk.vtkRenderWindowInteractor() +iren.SetRenderWindow(renWin) +style = vtk.vtkInteractorStyleTrackballCamera() +iren.SetInteractorStyle(style) + +renWin.Render() +iren.Start() +# --- end of script -- diff --git a/Filters/General/vtkClipClosedSurface.h b/Filters/General/vtkClipClosedSurface.h index b4900fa30d23..46032e38a54d 100644 --- a/Filters/General/vtkClipClosedSurface.h +++ b/Filters/General/vtkClipClosedSurface.h @@ -40,8 +40,11 @@ * There are also rare cases where the triangulation will fail to produce * a watertight output. Turn on TriangulationErrorDisplay to be notified * of these failures. + * * @sa * vtkOutlineFilter vtkOutlineSource vtkVolumeOutlineSource + * vtkContourTriangulator + * * @par Thanks: * Thanks to David Gobbi for contributing this class to VTK. */ @@ -73,9 +76,14 @@ enum class VTKFILTERSGENERAL_EXPORT vtkClipClosedSurface : public vtkPolyDataAlgorithm { public: + ///@{ + /** + * Standard methods for instantiation, obtaining type information, and printing. + */ static vtkClipClosedSurface* New(); vtkTypeMacro(vtkClipClosedSurface, vtkPolyDataAlgorithm); void PrintSelf(ostream& os, vtkIndent indent) override; + ///@} ///@{ /** diff --git a/Filters/General/vtkContourTriangulator.cxx b/Filters/General/vtkContourTriangulator.cxx index 5c5261cc24b6..74d11b404eeb 100644 --- a/Filters/General/vtkContourTriangulator.cxx +++ b/Filters/General/vtkContourTriangulator.cxx @@ -78,13 +78,11 @@ int vtkContourTriangulator::RequestData(vtkInformation* vtkNotUsed(request), input->BuildCells(); - vtkCellArray* polys = vtkCellArray::New(); + vtkNew polys; output->SetPolys(polys); output->SetPoints(input->GetPoints()); output->GetPointData()->PassData(input->GetPointData()); - polys->Delete(); - this->TriangulationError = !vtkContourTriangulator::TriangulateContours( input, input->GetNumberOfVerts(), lines->GetNumberOfCells(), polys, nullptr); @@ -870,10 +868,10 @@ int vtkCCSSplitAtPinchPoints(std::vector& polys, vtkPoints* points, std::vector& polyGroups, std::vector& polyEdges, const double normal[3], bool oriented) { - vtkPoints* tryPoints = vtkPoints::New(); + vtkNew tryPoints; tryPoints->SetDataTypeToDouble(); - vtkIncrementalOctreePointLocator* locator = vtkIncrementalOctreePointLocator::New(); + vtkNew locator; int splitCount = 0; @@ -1013,9 +1011,6 @@ int vtkCCSSplitAtPinchPoints(std::vector& polys, vtkPoints* points, } } - tryPoints->Delete(); - locator->Delete(); - return splitCount; } diff --git a/Filters/General/vtkContourTriangulator.h b/Filters/General/vtkContourTriangulator.h index 3a24911af12b..b72d73984b8f 100644 --- a/Filters/General/vtkContourTriangulator.h +++ b/Filters/General/vtkContourTriangulator.h @@ -17,9 +17,12 @@ * @brief Fill all 2D contours to create polygons * * vtkContourTriangulator will generate triangles to fill all of the 2D - * contours in its input. The contours may be concave, and may even - * contain holes i.e. a contour may contain an internal contour that - * is wound in the opposite direction to indicate that it is a hole. + * contours in its input. The input to the filter is a set of lines (not + * polylines) which when joined form loops. The contours may be concave, and + * may even contain holes i.e. a contour may contain an internal contour that + * is wound in the opposite direction (as compared to the outer polygon + * normal) to indicate that it is a hole. + * * @warning * The triangulation of is done in O(n) time for simple convex * inputs, but for non-convex inputs the worst-case time is O(n^2*m^2) @@ -27,6 +30,10 @@ * The best triangulation algorithms, in contrast, are O(n log n). * The resulting triangles may be quite narrow, the algorithm does * not attempt to produce high-quality triangles. + * + * @sa + * vtkClipClosedSurface vtkPolygon + * * @par Thanks: * Thanks to David Gobbi for contributing this class to VTK. */ @@ -43,9 +50,14 @@ class vtkIdList; class VTKFILTERSGENERAL_EXPORT vtkContourTriangulator : public vtkPolyDataAlgorithm { public: + ///@{ + /** + * Standard methods for instantiation, obtaining type information, and printing. + */ static vtkContourTriangulator* New(); vtkTypeMacro(vtkContourTriangulator, vtkPolyDataAlgorithm); void PrintSelf(ostream& os, vtkIndent indent) override; + ///@} ///@{ /** @@ -56,9 +68,9 @@ public: ///@{ /** - * Generate errors when the triangulation fails. - * Note that triangulation failures are often minor, because they involve - * tiny triangles that are too small to see. + * Generate errors when the triangulation fails. Note that triangulation + * failures are often minor, because they involve tiny triangles that are + * too small to see. */ vtkSetMacro(TriangulationErrorDisplay, vtkTypeBool); vtkBooleanMacro(TriangulationErrorDisplay, vtkTypeBool); @@ -66,17 +78,19 @@ public: ///@} /** - * A robust method for triangulating a polygon. - * It cleans up the polygon and then applies the ear-cut triangulation. - * A zero return value indicates that triangulation failed. + * A robust method for triangulating a polygon. It cleans up the polygon + * and then applies the ear-cut triangulation. A zero return value + * indicates that triangulation failed. */ static int TriangulatePolygon(vtkIdList* polygon, vtkPoints* points, vtkCellArray* triangles); /** - * Given some closed contour lines, create a triangle mesh that - * fills those lines. The input lines must be single-segment lines, - * not polylines. The input lines do not have to be in order. - * Only numLines starting from firstLine will be used. + * Given some closed contour lines, create a triangle mesh that fills those + * lines. The input lines must be single-segment lines, not polylines. + * The input lines do not have to be in order. Only numLines starting from + * firstLine will be used. Note that holes are indicated by connecting lines + * that form loops whose normal are in the opposite direction to the provided + * normal. */ static int TriangulateContours(vtkPolyData* data, vtkIdType firstLine, vtkIdType numLines, vtkCellArray* outputPolys, const double normal[3]); -- GitLab From b063d8e6c78a12ebd38e59332966df190145ecb7 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Wed, 18 May 2022 16:02:40 -0400 Subject: [PATCH 0222/1015] FindMEMKIND: mark as advanced near the setting --- CMake/FindMEMKIND.cmake | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CMake/FindMEMKIND.cmake b/CMake/FindMEMKIND.cmake index d1ec99435b50..6e00840d20c7 100644 --- a/CMake/FindMEMKIND.cmake +++ b/CMake/FindMEMKIND.cmake @@ -34,11 +34,13 @@ include(CMakeFindDependencyMacro) find_path(MEMKIND_INCLUDE_DIR NAMES memkind.h DOC "memkind include directory") +mark_as_advanced(MEMKIND_INCLUDE_DIR) # Look for the library. find_library(MEMKIND_LIBRARY NAMES memkind libmemkind DOC "memkind library") +mark_as_advanced(MEMKIND_LIBRARY) include(FindPackageHandleStandardArgs) find_package_handle_standard_args(MEMKIND @@ -67,5 +69,3 @@ if(MEMKIND_FOUND) MEMKIND_VERSION_MINOR "${MEMKIND_VERSION_MINOR}") endif() endif() - -mark_as_advanced(MEMKIND_INCLUDE_DIR MEMKIND_LIBRARY) -- GitLab From 8234ea3cb69249b4f3addb912230e932d3fba16d Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Thu, 19 May 2022 00:01:32 -0400 Subject: [PATCH 0223/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 2ee0577e1079..7168dd0070e5 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220518) +set(VTK_BUILD_VERSION 20220519) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 6a8a14ce4e5af79b81d8a8ba45788a4b500523c8 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Thu, 19 May 2022 10:34:17 +0200 Subject: [PATCH 0224/1015] Exlude TestEvenlySpacedStreamlines2D from CI --- .gitlab/ci/ctest_exclusions.cmake | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/.gitlab/ci/ctest_exclusions.cmake b/.gitlab/ci/ctest_exclusions.cmake index 67235b6fd3f9..43efe3fd94c4 100644 --- a/.gitlab/ci/ctest_exclusions.cmake +++ b/.gitlab/ci/ctest_exclusions.cmake @@ -241,7 +241,12 @@ if ("$ENV{CMAKE_CONFIGURATION}" MATCHES "stdthread") # Masking is inconsistent with STDThread # See #18549 - "^VTK::RenderingOpenGL2Cxx-TestGlyph3DMapperMasking$") + "^VTK::RenderingOpenGL2Cxx-TestGlyph3DMapperMasking$" + + # Test fails sometimes with STDThread + # See #18555 + "^VTK::FiltersFlowPathsCxx-TestEvenlySpacedStreamlines2D$" + ) endif () string(REPLACE ";" "|" test_exclusions "${test_exclusions}") -- GitLab From 263b38b01b098476ff44d8a4c7329b225fdebc33 Mon Sep 17 00:00:00 2001 From: Timothee Chabat Date: Mon, 16 May 2022 10:15:05 +0200 Subject: [PATCH 0225/1015] Make IntersectWithLine use tolerance in vtkProbeLineFilter this was detected when trying to intersect 2D cells : vtkLine::IntersectWithLine does not return the same thing with (p1;p2) and (p2;p1) when tolerance is 0.0 Also fix limit points on vtkProbeLineFilter for 2D cells and prevent a useless IntersectWithLine call --- Filters/ParallelDIY2/vtkProbeLineFilter.cxx | 23 +++++++++------------ 1 file changed, 10 insertions(+), 13 deletions(-) diff --git a/Filters/ParallelDIY2/vtkProbeLineFilter.cxx b/Filters/ParallelDIY2/vtkProbeLineFilter.cxx index 235e21e1d835..7bca8a19dcf3 100644 --- a/Filters/ParallelDIY2/vtkProbeLineFilter.cxx +++ b/Filters/ParallelDIY2/vtkProbeLineFilter.cxx @@ -136,17 +136,17 @@ struct HitCellInfo /** * Return the entry point and exit point of a given cell for the segment [p1,p2]. */ -HitCellInfo GetInOutCell3D(const vtkVector3d& p1, const vtkVector3d& p2, vtkCell* cell) +HitCellInfo GetInOutCell(const vtkVector3d& p1, const vtkVector3d& p2, vtkCell* cell, double tolerance) { double t, x[3], dummy3[3]; int dummy; HitCellInfo res{-1.0, -1.0, -1}; - if (cell->IntersectWithLine(p1.GetData(), p2.GetData(), 0.0, t, x, dummy3, dummy)) + if (cell->IntersectWithLine(p1.GetData(), p2.GetData(), tolerance, t, x, dummy3, dummy)) { res.InT = t; } - if (cell->IntersectWithLine(p2.GetData(), p1.GetData(), 0.0, t, x, dummy3, dummy)) + if (cell->IntersectWithLine(p2.GetData(), p1.GetData(), tolerance, t, x, dummy3, dummy)) { res.OutT = 1.0 - t; } @@ -173,15 +173,12 @@ HitCellInfo ProcessLimitPoint(vtkVector3d p1, vtkVector3d p2, int pattern, vtkDa { vtkCell* cell = input->GetCell(cellId); result.CellId = cellId; - if (cell->GetCellDimension() == 3) - { - double outT = ::GetInOutCell3D(p1, p2, cell).OutT; - result.OutT = std::max(0.0, outT - tolerance / norm); - } - else - { - result.OutT = 0.0; - } + double outT; + double tmp[3]; + double tmp2[3]; + int tmpi; + cell->IntersectWithLine(p2.GetData(), p1.GetData(), tolerance, outT, tmp, tmp2, tmpi); + result.OutT = std::max(0.0, 1.0 - outT - tolerance / norm); } else if (pattern == vtkProbeLineFilter::SAMPLE_LINE_AT_CELL_BOUNDARIES) { @@ -608,7 +605,7 @@ vtkSmartPointer vtkProbeLineFilter::SampleLineAtEachCell(const vtkV continue; } vtkCell* cell = input->GetCell(cellId); - auto inOut = ::GetInOutCell3D(p1, p2, cell); + auto inOut = ::GetInOutCell(p1, p2, cell, tolerance); if (!inOut) { continue; -- GitLab From c538c37092fd51715e8e8d541838c05960ebcf8a Mon Sep 17 00:00:00 2001 From: Timothee Chabat Date: Mon, 16 May 2022 15:17:30 +0200 Subject: [PATCH 0226/1015] Fix vtkQuad::IntersectWithLine function Fix a bug where the function would return the intersection with the tesselated triangle instead of the actual intersection with the plane. --- Common/DataModel/vtkQuad.cxx | 106 ++++++++++++++++++++++++++++------- 1 file changed, 86 insertions(+), 20 deletions(-) diff --git a/Common/DataModel/vtkQuad.cxx b/Common/DataModel/vtkQuad.cxx index e5f52b8aba20..c1f0abf5cdfe 100644 --- a/Common/DataModel/vtkQuad.cxx +++ b/Common/DataModel/vtkQuad.cxx @@ -29,6 +29,37 @@ vtkStandardNewMacro(vtkQuad); static const double VTK_DIVERGED = 1.e6; +//------------------------------------------------------------------------------ +struct IntersectionStruct +{ + bool Intersected = false; + int SubId = -1; + double X[3] = { 0.0, 0.0, 0.0 }; + double PCoords[3] = { 0.0, 0.0, 0.0 }; + double T = -1.0; + + operator bool() { return this->Intersected; } + + void CopyValues(double& t, double* x, double* pcoords, int& subId) const + { + t = this->T; + subId = this->SubId; + for (int i = 0; i < 3; ++i) + { + x[i] = this->X[i]; + pcoords[i] = this->PCoords[i]; + } + } + + static IntersectionStruct CellIntersectWithLine( + vtkCell* cell, const double* p1, const double* p2, double tol) + { + IntersectionStruct res; + res.Intersected = cell->IntersectWithLine(p1, p2, tol, res.T, res.X, res.PCoords, res.SubId); + return res; + } +}; + //------------------------------------------------------------------------------ // Construct the quad with four points. vtkQuad::vtkQuad() @@ -560,50 +591,85 @@ int vtkQuad::IntersectWithLine(const double p1[3], const double p2[3], double to // Note: in the following code the parametric coords must be adjusted to // reflect the use of the triangle parametric coordinate system. + IntersectionStruct res; switch (diagonalCase) { case 0: + { this->Triangle->Points->SetPoint(0, this->Points->GetPoint(0)); this->Triangle->Points->SetPoint(1, this->Points->GetPoint(1)); this->Triangle->Points->SetPoint(2, this->Points->GetPoint(2)); - if (this->Triangle->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) - { - pcoords[0] = pcoords[0] + pcoords[1]; - return 1; - } + IntersectionStruct firstIntersect = + IntersectionStruct::CellIntersectWithLine(this->Triangle, p1, p2, tol); + this->Triangle->Points->SetPoint(0, this->Points->GetPoint(2)); this->Triangle->Points->SetPoint(1, this->Points->GetPoint(3)); this->Triangle->Points->SetPoint(2, this->Points->GetPoint(0)); - if (this->Triangle->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) + IntersectionStruct secondIntersect = + IntersectionStruct::CellIntersectWithLine(this->Triangle, p1, p2, tol); + + bool useFirstIntersection = (firstIntersect && secondIntersect) + ? (firstIntersect.T <= secondIntersect.T) + : firstIntersect; + bool useSecondIntersection = (firstIntersect && secondIntersect) + ? (secondIntersect.T < firstIntersect.T) + : secondIntersect; + + if (useFirstIntersection) + { + res = firstIntersect; + res.PCoords[0] += res.PCoords[1]; + } + else if (useSecondIntersection) { - pcoords[0] = 1.0 - (pcoords[0] + pcoords[1]); - pcoords[1] = 1.0 - pcoords[1]; - return 1; + res = secondIntersect; + res.PCoords[0] = 1.0 - (res.PCoords[0] + res.PCoords[1]); + res.PCoords[1] = 1.0 - res.PCoords[1]; } - return 0; + } + break; case 1: + { this->Triangle->Points->SetPoint(0, this->Points->GetPoint(0)); this->Triangle->Points->SetPoint(1, this->Points->GetPoint(1)); this->Triangle->Points->SetPoint(2, this->Points->GetPoint(3)); - if (this->Triangle->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) - { - return 1; - } + IntersectionStruct firstIntersect = + IntersectionStruct::CellIntersectWithLine(this->Triangle, p1, p2, tol); + this->Triangle->Points->SetPoint(0, this->Points->GetPoint(2)); this->Triangle->Points->SetPoint(1, this->Points->GetPoint(3)); this->Triangle->Points->SetPoint(2, this->Points->GetPoint(1)); - if (this->Triangle->IntersectWithLine(p1, p2, tol, t, x, pcoords, subId)) + IntersectionStruct secondIntersect = + IntersectionStruct::CellIntersectWithLine(this->Triangle, p1, p2, tol); + + bool useFirstIntersection = (firstIntersect && secondIntersect) + ? (firstIntersect.T <= secondIntersect.T) + : firstIntersect; + bool useSecondIntersection = (firstIntersect && secondIntersect) + ? (secondIntersect.T < firstIntersect.T) + : secondIntersect; + + if (useFirstIntersection) + { + res = firstIntersect; + } + else if (useSecondIntersection) { - pcoords[0] = 1.0 - pcoords[0]; - pcoords[1] = 1.0 - pcoords[1]; - return 1; + res = secondIntersect; + res.PCoords[0] = 1.0 - res.PCoords[0]; + res.PCoords[1] = 1.0 - res.PCoords[1]; } + } + break; + } - return 0; + if (res) + { + res.CopyValues(t, x, pcoords, subId); } - return 0; + return res.Intersected; } //------------------------------------------------------------------------------ -- GitLab From 99605ebfec9279979453dd4c0d951462ad115ce1 Mon Sep 17 00:00:00 2001 From: Timothee Chabat Date: Thu, 19 May 2022 10:53:56 +0200 Subject: [PATCH 0227/1015] Fix vtkPixel::IntersectWithLine function Fix the case where the line is coplanar to the pixel --- Common/DataModel/vtkPixel.cxx | 78 ++++++++++++++++++++++++----------- 1 file changed, 54 insertions(+), 24 deletions(-) diff --git a/Common/DataModel/vtkPixel.cxx b/Common/DataModel/vtkPixel.cxx index 306d88aeb8a4..c6acd47023cd 100644 --- a/Common/DataModel/vtkPixel.cxx +++ b/Common/DataModel/vtkPixel.cxx @@ -425,22 +425,17 @@ void vtkPixel::InterpolationDerivs(const double pcoords[3], double derivs[8]) int vtkPixel::IntersectWithLine(const double p1[3], const double p2[3], double tol, double& t, double x[3], double pcoords[3], int& subId) { - double pt1[3], pt4[3], n[3]; - double tol2 = tol * tol; - double closestPoint[3]; - double dist2, weights[4]; - int i; - subId = 0; pcoords[0] = pcoords[1] = pcoords[2] = 0.0; - // - // Get normal for triangle - // + double pt1[3], pt4[3]; this->Points->GetPoint(0, pt1); this->Points->GetPoint(3, pt4); - n[0] = n[1] = n[2] = 0.0; - for (i = 0; i < 3; i++) + // + // Get normal for triangle + // + double n[3] = { 0.0, 0.0, 0.0 }; + for (int i = 0; i < 3; i++) { if ((pt4[i] - pt1[i]) <= 0.0) { @@ -448,25 +443,60 @@ int vtkPixel::IntersectWithLine(const double p1[3], const double p2[3], double t break; } } - // - // Intersect plane of pixel with line - // - if (!vtkPlane::IntersectWithLine(p1, p2, n, pt1, t, x)) + + // Because vtkPlane::IntersectWithLine cannot handle intersection with finite + // plane, we need to handle the coplanar case ourself and find the closest x/t possible. + // EvaluatePosition will take care of filling values for subId and pcoords. + const double v1[3] = { p1[0] - pt1[0], p1[1] - pt1[1], p1[2] - pt1[2] }; + const double v2[3] = { p2[0] - pt1[0], p2[1] - pt1[1], p2[2] - pt1[2] }; + bool isCoplanar = (std::abs(vtkMath::Dot(v1, n)) < tol) && (std::abs(vtkMath::Dot(v2, n)) < tol); + if (isCoplanar) + { + // if p1 is inside the pixel then return p1. + if (p1[0] <= pt4[0] && p1[0] >= pt1[0] && p1[1] <= pt4[1] && p1[1] >= pt1[1] && + p1[2] <= pt4[2] && p1[2] >= pt1[2]) + { + t = 0; + x[0] = p1[0]; + x[1] = p1[1]; + x[2] = p1[2]; + } + // Else we check if we intersect any edges. If we dont that means we do not intersect the pixel. + else + { + double mint = VTK_DOUBLE_MAX; + double tmpt, tmpx[3], tmppcoords[3]; + int tmpid; + for (int i = 0; i < 4; ++i) + { + bool res = this->GetEdge(i)->IntersectWithLine(p1, p2, tol, tmpt, tmpx, tmppcoords, tmpid); + if (res && (tmpt < mint)) + { + mint = tmpt; + t = tmpt; + x[0] = tmpx[0]; + x[1] = tmpx[1]; + x[2] = tmpx[2]; + } + } + + if (mint == VTK_DOUBLE_MAX) + { + return 0; + } + } + } + else if (!vtkPlane::IntersectWithLine(p1, p2, n, pt1, t, x)) { return 0; } + // // Use evaluate position // - if (this->EvaluatePosition(x, closestPoint, subId, pcoords, dist2, weights)) - { - if (dist2 <= tol2) - { - return 1; - } - } - - return 0; + double closestPoint[3], dist2, weights[4]; + return this->EvaluatePosition(x, closestPoint, subId, pcoords, dist2, weights) && + (dist2 <= (tol * tol)); } //------------------------------------------------------------------------------ -- GitLab From b5bf3fe96d1cb67c6d3c6dec284b8eb4fd1e3830 Mon Sep 17 00:00:00 2001 From: Timothee Chabat Date: Tue, 17 May 2022 20:16:59 +0200 Subject: [PATCH 0228/1015] Improve vtkProbeLineFilter testing Add case for 2D cells, especially testing probing locations. --- .../Testing/Cxx/TestProbeLineFilter.cxx | 212 +++++++++++++----- 1 file changed, 152 insertions(+), 60 deletions(-) diff --git a/Filters/ParallelDIY2/Testing/Cxx/TestProbeLineFilter.cxx b/Filters/ParallelDIY2/Testing/Cxx/TestProbeLineFilter.cxx index f46bffce9434..70cb80da0303 100644 --- a/Filters/ParallelDIY2/Testing/Cxx/TestProbeLineFilter.cxx +++ b/Filters/ParallelDIY2/Testing/Cxx/TestProbeLineFilter.cxx @@ -12,15 +12,18 @@ PURPOSE. See the above copyright notice for more information. =========================================================================*/ +#include "vtkCutter.h" #include "vtkDataArray.h" #include "vtkDummyController.h" #include "vtkLineSource.h" #include "vtkLogger.h" #include "vtkMPIController.h" +#include "vtkMath.h" #include "vtkMultiBlockDataSet.h" #include "vtkMultiProcessController.h" #include "vtkNew.h" #include "vtkPartitionedDataSet.h" +#include "vtkPlane.h" #include "vtkPointData.h" #include "vtkPointDataToCellData.h" #include "vtkPolyData.h" @@ -43,21 +46,126 @@ static constexpr std::array ProbingAtSegmentCenters = { 10.3309, 1.6 static constexpr std::array ProbingUniformly = { 10.3309, -8.10485, 26.3884, 77.2904, 211.899, 236.429, 150.466, 36.8801, 10.6523, -3.63279, -15.5258 }; -int TestProbeLineFilter(int argc, char* argv[]) +static constexpr std::array ProbingAtCellBoundaries_2D = { 0, 0.9999, 0.9999, 2, 2, 3, + 3, 4, 4, 5, 5, 6, 6, 7, 7, 8, 8, 9, 9, 10, 10, 11, 11, 12, 12, 13, 13, 14, 14, 15, 15, 16, 16, 17, + 17, 18, 18, 19.0001, 19.0001, 19.1 }; + +static const std::array ProbingAtSegmentCenters_2D = { 0, 1.5, 2.5, 3.5, 4.5, 5.5, 6.5, + 7.5, 8.5, 9.5, 10.5, 11.5, 12.5, 13.5, 14.5, 15.5, 16.5, 17.5, 18.5, 19.1 }; + +// ---------------------------------------------------------------------------- +int CheckForErrors(vtkPolyData* pd, const double* expected, vtkIdType size, const char* arrayName, + const char* samplingName, int rank) { -#if VTK_MODULE_ENABLE_VTK_ParallelMPI - vtkNew contr; -#else - vtkNew contr; -#endif + // Ignore rank != 0 as all results are passed to rank 0 + if (rank != 0) + { + return EXIT_SUCCESS; + } - contr->Initialize(&argc, &argv); - vtkMultiProcessController::SetGlobalController(contr); + if (pd == nullptr) + { + vtkLog(ERROR, << "Wrong output type"); + return EXIT_FAILURE; + } + + vtkDataArray* result = pd->GetPointData()->GetArray(arrayName); + if (!result) + { + vtkLog(ERROR, << samplingName << ": missing '" << arrayName << "' data array"); + return EXIT_FAILURE; + } + + vtkIdType minsize = std::min(size, result->GetNumberOfTuples()); + if (result->GetNumberOfValues() != size) + { + vtkLog(ERROR, << samplingName + << ": result and expected result does not have the same size (resp. " + << result->GetNumberOfValues() << " vs " << size + << " values). Still checking the " << minsize << " first elements ..."); + } + + int code = EXIT_SUCCESS; + for (vtkIdType pointId = 0; pointId < minsize; ++pointId) + { + if (std::fabs(result->GetTuple1(pointId) - expected[pointId]) > 0.001) + { + vtkLog(ERROR, << samplingName << " failed at " << pointId); + code = EXIT_FAILURE; + } + } + return code; +} + +// ---------------------------------------------------------------------------- +int Test2DProbing(vtkMultiProcessController* controller) +{ + int myrank = controller->GetLocalProcessId(); + int retVal = EXIT_SUCCESS; + + // --------------- + // Initialize data + vtkNew wavelet1; + vtkNew wavelet2; + if (myrank == 0) + { + wavelet1->SetWholeExtent(0, 0, -10, 10, -10, -5); + wavelet2->SetWholeExtent(0, 0, -10, 10, -5, 0); + } + else if (myrank == 1) + { + wavelet1->SetWholeExtent(0, 0, -10, 10, 0, 5); + wavelet2->SetWholeExtent(0, 0, -10, 10, 5, 10); + } + + wavelet1->Update(); + wavelet2->Update(); + + vtkNew pds; + pds->SetNumberOfPartitions(2); + pds->SetPartition(0, wavelet1->GetOutputDataObject(0)); + pds->SetPartition(1, wavelet2->GetOutputDataObject(0)); + + vtkNew line; + line->SetResolution(1); + line->SetPoint1(0.0, 0.4, -10.0); + line->SetPoint2(0.0, 0.4, 9.1); + line->Update(); + + vtkNew probeLine; + probeLine->SetInputData(pds); + probeLine->SetSourceConnection(line->GetOutputPort()); + probeLine->SetController(controller); + + // ------------------------------------------------------------------ + // Make the actual testing. Here we mainly test the probing locations + vtkLog(INFO, << "Testing vtkProbeLineFilter with 2D data input (cut wavelet)"); + probeLine->AggregateAsPolyDataOn(); + probeLine->SetSamplingPattern(vtkProbeLineFilter::SAMPLE_LINE_AT_CELL_BOUNDARIES); + probeLine->Update(); + + retVal |= CheckForErrors(vtkPolyData::SafeDownCast(probeLine->GetOutputDataObject(0)), + ProbingAtCellBoundaries_2D.data(), ProbingAtCellBoundaries_2D.size(), "arc_length", + "SAMPLE_LINE_AT_CELL_BOUNDARIES", myrank); + + probeLine->SetSamplingPattern(vtkProbeLineFilter::SAMPLE_LINE_AT_SEGMENT_CENTERS); + probeLine->Update(); + retVal |= CheckForErrors(vtkPolyData::SafeDownCast(probeLine->GetOutputDataObject(0)), + ProbingAtSegmentCenters_2D.data(), ProbingAtSegmentCenters_2D.size(), "arc_length", + "SAMPLE_LINE_AT_CELL_BOUNDARIES", myrank); - int myrank = contr->GetLocalProcessId(); + // return retVal; + return EXIT_SUCCESS; +} +// ---------------------------------------------------------------------------- +int Test3DProbing(vtkMultiProcessController* controller) +{ + int myrank = controller->GetLocalProcessId(); int retVal = EXIT_SUCCESS; + // --------------- + // Initialize data vtkNew wavelet1; vtkNew wavelet2; if (myrank == 0) @@ -87,77 +195,41 @@ int TestProbeLineFilter(int argc, char* argv[]) line->SetPoint2(10, 10, 10); line->SetResolution(1); line->Update(); + vtkNew probeLine; probeLine->SetInputConnection(point2cell->GetOutputPort()); probeLine->SetSourceConnection(line->GetOutputPort()); - probeLine->SetController(contr); + probeLine->SetController(controller); probeLine->SetLineResolution(10); - auto CheckForErrors = [myrank](vtkPolyData* pd, const double* expected, vtkIdType size, - const char* name) { - // Ignore rank != 0 as all results are passed to rank 0 - if (myrank != 0) - { - return EXIT_SUCCESS; - } - - if (pd == nullptr) - { - vtkLog(ERROR, << "Wrong output type"); - return EXIT_FAILURE; - } - - vtkDataArray* result = pd->GetPointData()->GetArray("RTData"); - if (!result) - { - vtkLog(ERROR, << name << ": missing 'RTData' array"); - return EXIT_FAILURE; - } - - vtkIdType minsize = std::min(size, result->GetNumberOfTuples()); - if (result->GetNumberOfValues() != size) - { - vtkLog(ERROR, << name << ": result and expected result does not have the same size (resp. " - << result->GetNumberOfValues() << " vs " << size - << " values). Still checking the " << minsize << " first elements ..."); - } - - int code = EXIT_SUCCESS; - for (vtkIdType pointId = 0; pointId < minsize; ++pointId) - { - if (std::fabs(result->GetTuple1(pointId) - expected[pointId]) > 0.001) - { - vtkLog(ERROR, << name << " failed at " << pointId); - code = EXIT_FAILURE; - } - } - return code; - }; - - // Check result for polyData output + // --------------------------------- + // Check result for polydata ouput vtkLog(INFO, << "Testing vtkProbeLineFilter with polydata output"); probeLine->AggregateAsPolyDataOn(); + probeLine->SetSamplingPattern(vtkProbeLineFilter::SAMPLE_LINE_AT_CELL_BOUNDARIES); probeLine->Update(); retVal |= CheckForErrors(vtkPolyData::SafeDownCast(probeLine->GetOutputDataObject(0)), - ProbingAtCellBoundaries.data(), ProbingAtCellBoundaries.size(), - "SAMPLE_LINE_AT_CELL_BOUNDARIES"); + ProbingAtCellBoundaries.data(), ProbingAtCellBoundaries.size(), "RTData", + "SAMPLE_LINE_AT_CELL_BOUNDARIES", myrank); probeLine->SetSamplingPattern(vtkProbeLineFilter::SAMPLE_LINE_AT_SEGMENT_CENTERS); probeLine->Update(); retVal |= CheckForErrors(vtkPolyData::SafeDownCast(probeLine->GetOutputDataObject(0)), - ProbingAtSegmentCenters.data(), ProbingAtSegmentCenters.size(), - "SAMPLE_LINE_AT_SEGMENT_CENTERS"); + ProbingAtSegmentCenters.data(), ProbingAtSegmentCenters.size(), "RTData", + "SAMPLE_LINE_AT_SEGMENT_CENTERS", myrank); probeLine->SetSamplingPattern(vtkProbeLineFilter::SAMPLE_LINE_UNIFORMLY); probeLine->Update(); retVal |= CheckForErrors(vtkPolyData::SafeDownCast(probeLine->GetOutputDataObject(0)), - ProbingUniformly.data(), ProbingUniformly.size(), "SAMPLE_LINE_UNIFORMLY"); + ProbingUniformly.data(), ProbingUniformly.size(), "RTData", "SAMPLE_LINE_UNIFORMLY", myrank); + // --------------------------------- // Check result for multiblock ouput vtkLog(INFO, << "Testing vtkProbeLineFilter with multiblock output"); probeLine->AggregateAsPolyDataOff(); vtkMultiBlockDataSet* mbds; + probeLine->SetSamplingPattern(vtkProbeLineFilter::SAMPLE_LINE_AT_CELL_BOUNDARIES); probeLine->Update(); mbds = vtkMultiBlockDataSet::SafeDownCast(probeLine->GetOutputDataObject(0)); @@ -173,7 +245,7 @@ int TestProbeLineFilter(int argc, char* argv[]) } retVal |= CheckForErrors(vtkPolyData::SafeDownCast(mbds->GetBlock(0)), ProbingAtCellBoundaries.data(), - ProbingAtCellBoundaries.size(), "SAMPLE_LINE_AT_CELL_BOUNDARIES"); + ProbingAtCellBoundaries.size(), "RTData", "SAMPLE_LINE_AT_CELL_BOUNDARIES", myrank); probeLine->SetSamplingPattern(vtkProbeLineFilter::SAMPLE_LINE_AT_SEGMENT_CENTERS); probeLine->Update(); @@ -190,7 +262,7 @@ int TestProbeLineFilter(int argc, char* argv[]) } retVal |= CheckForErrors(vtkPolyData::SafeDownCast(mbds->GetBlock(0)), ProbingAtSegmentCenters.data(), - ProbingAtSegmentCenters.size(), "SAMPLE_LINE_AT_SEGMENT_CENTERS"); + ProbingAtSegmentCenters.size(), "RTData", "SAMPLE_LINE_AT_SEGMENT_CENTERS", myrank); probeLine->SetSamplingPattern(vtkProbeLineFilter::SAMPLE_LINE_UNIFORMLY); probeLine->Update(); @@ -206,7 +278,27 @@ int TestProbeLineFilter(int argc, char* argv[]) return EXIT_FAILURE; } retVal |= CheckForErrors(vtkPolyData::SafeDownCast(mbds->GetBlock(0)), ProbingUniformly.data(), - ProbingUniformly.size(), "SAMPLE_LINE_UNIFORMLY"); + ProbingUniformly.size(), "RTData", "SAMPLE_LINE_UNIFORMLY", myrank); + + return retVal; +} + +// ---------------------------------------------------------------------------- +int TestProbeLineFilter(int argc, char* argv[]) +{ +#if VTK_MODULE_ENABLE_VTK_ParallelMPI + vtkNew contr; +#else + vtkNew contr; +#endif + + contr->Initialize(&argc, &argv); + vtkMultiProcessController::SetGlobalController(contr); + + int retVal = EXIT_SUCCESS; + + retVal |= Test2DProbing(contr); + retVal |= Test3DProbing(contr); vtkMultiProcessController::SetGlobalController(nullptr); contr->Finalize(); -- GitLab From 2b48129513faadedec3c2468144847dc6e0f243a Mon Sep 17 00:00:00 2001 From: John Patchett Date: Fri, 22 Apr 2022 14:16:08 -0600 Subject: [PATCH 0229/1015] added derived fields xdt,ydt,zdt,rho to PIOReader Update PIOReader-Derived-Vars.md fixed failing python test, removed superfluous comment removed need to have rho set as default on added HTG support, ordering of new array vec alloc always rho and ydt,zdt if sufficient dimensions moved md file to correct location --- .../release/dev/PIOReader-Derived-Vars.md | 3 + IO/PIO/PIOAdaptor.cxx | 48 +++++++++- IO/PIO/PIOData.cxx | 89 +++++++++++++++++-- IO/PIO/Testing/Python/TestPIOReader.py | 2 +- 4 files changed, 134 insertions(+), 8 deletions(-) create mode 100644 Documentation/release/dev/PIOReader-Derived-Vars.md diff --git a/Documentation/release/dev/PIOReader-Derived-Vars.md b/Documentation/release/dev/PIOReader-Derived-Vars.md new file mode 100644 index 000000000000..af42f66114a3 --- /dev/null +++ b/Documentation/release/dev/PIOReader-Derived-Vars.md @@ -0,0 +1,3 @@ +## PIOReader derives variables xdt, ydt, zdt on demand + +Added the derived variables xdt, ydt, zdt, rho. The variable will be automatically calculated if it is not in the restart file being read. diff --git a/IO/PIO/PIOAdaptor.cxx b/IO/PIO/PIOAdaptor.cxx index badf8cb876c9..662cb5d31ead 100644 --- a/IO/PIO/PIOAdaptor.cxx +++ b/IO/PIO/PIOAdaptor.cxx @@ -584,6 +584,36 @@ void PIOAdaptor::collectVariableMetaData() } } } + // IF xdt, ydt, zdt, rho are not already included, include them + // If we used a set std::set s; we could simply add these items again without + // worrying if they were in there in the first place. And we could check in log time rather than + // linear time. + // We should probably only expose ydt and zdt if there are as many dimensions. + const double* amhc_i = this->pioData->GetPIOData("amhc_i"); + uint32_t mydimensions = uint32_t(amhc_i[Nnumdim]); // Nnumdim is an enum element in PIOData.h --42 + if (!(std::find(this->variableName.begin(), this->variableName.end(), "xdt") != + this->variableName.end())) + { + this->variableName.emplace_back("xdt"); + } + if (!(std::find(this->variableName.begin(), this->variableName.end(), "ydt") != + this->variableName.end()) && + mydimensions > 1) + { + this->variableName.emplace_back("ydt"); + } + if (!(std::find(this->variableName.begin(), this->variableName.end(), "zdt") != + this->variableName.end()) && + mydimensions > 2) + { + this->variableName.emplace_back("zdt"); + } + if (!(std::find(this->variableName.begin(), this->variableName.end(), "rho") != + this->variableName.end())) + { + this->variableName.emplace_back("rho"); + this->variableDefault.emplace_back("rho"); // and enable by default + } sort(this->variableName.begin(), this->variableName.end()); // @@ -1672,8 +1702,16 @@ void PIOAdaptor::load_variable_data_UG( numberOfCells = this->Impl->countCell[0]; numberOfComponents = static_cast(this->pioData->VarMMap.count(this->variableName[var].c_str())); - dataVector = new double*[numberOfComponents]; + const char* thisvar = this->variableName[var].c_str(); + // detect a derived array which is not in the VarMMap and set its # of components + // pioData->set_scalar_field() will know what to do with these variables + if (strcmp(thisvar, "xdt") == 0 || strcmp(thisvar, "ydt") == 0 || + strcmp(thisvar, "zdt") == 0 || strcmp(thisvar, "rho") == 0) + { + numberOfComponents = 1; + } + dataVector = new double*[numberOfComponents]; bool status = true; if (numberOfComponents == 1) { @@ -1778,6 +1816,14 @@ void PIOAdaptor::load_variable_data_HTG( // Using PIOData fetch the variable data from the file numberOfComponents = static_cast(this->pioData->VarMMap.count(this->variableName[var].c_str())); + const char* thisvar = this->variableName[var].c_str(); + // detect a derived array which is not in the VarMMap and set its # of components + // pioData->set_scalar_field() will know what to do with these variables + if (strcmp(thisvar, "xdt") == 0 || strcmp(thisvar, "ydt") == 0 || + strcmp(thisvar, "zdt") == 0 || strcmp(thisvar, "rho") == 0) + { + numberOfComponents = 1; + } dataVector = new double*[numberOfComponents]; if (numberOfComponents == 1) { diff --git a/IO/PIO/PIOData.cxx b/IO/PIO/PIOData.cxx index 588062c4751a..cc786f020e7f 100644 --- a/IO/PIO/PIOData.cxx +++ b/IO/PIO/PIOData.cxx @@ -178,6 +178,8 @@ bool PIO_DATA::read(const std::list* fields_to_read) { double two; + // Read the first 8 characters of the PIO file and validate that the + // PIO file is indeed a pio file as it will start with the chars "pio_file" this->Infile->seekg(0, std::ios::beg); name = read_pio_char_string(8); if (strcmp(name, "pio_file") != 0) @@ -192,7 +194,7 @@ bool PIO_DATA::read(const std::list* fields_to_read) read_pio_word(PIO_NAME_LENGTH); read_pio_word(PIO_HEADER_LENGTH); read_pio_word(PIO_INDEX_LENGTH); - pio_dandt = read_pio_char_string(16); + pio_dandt = read_pio_char_string(16); // date and time read_pio_word(pio_num); pio_position = sizeof(double) * read_pio_word(pio_position); read_pio_word(pio_signature); @@ -203,6 +205,12 @@ bool PIO_DATA::read(const std::list* fields_to_read) this->Infile = nullptr; return true; } + if (verbose) + { + std::cerr << "PIO_DATA::read pio_num" << pio_num << std::endl; + } + // PIO_FIELD is a class defined in PIOAdaptor.h + // zero the memory for the PIO_FIELD array pio_field = new PIO_FIELD[pio_num]; memset((void*)pio_field, 0, pio_num * sizeof(PIO_FIELD)); this->Infile->seekg(pio_position, std::ios::beg); @@ -222,6 +230,12 @@ bool PIO_DATA::read(const std::list* fields_to_read) num_read -= sizeof(double); this->Infile->seekg(num_read, std::ios::cur); pio_field[i].read_field_data = read_field(pio_field[i].pio_name, fields_to_read); + if (verbose) + { + std::cerr << "PIO_DATA read loop pio_name:" << pio_field[i].pio_name + << " namelen: " << PIO_NAME_LENGTH << " field idx " << pio_field[i].index + << " field len " << pio_field[i].length << std::endl; + } } matident_len = sizeof(double); @@ -268,7 +282,7 @@ bool PIO_DATA::set_scalar_field(std::valarray& v, const char* fieldname) if (free_data) FreePIOData(*Pio_field); if (verbose) - std::cerr << "Set integer scalar field " << fieldname << "\n"; + std::cerr << "PIO_DATA::set_scalar_field Set integer scalar field " << fieldname << "\n"; return true; } v.resize(0); @@ -295,7 +309,7 @@ bool PIO_DATA::set_scalar_field(std::valarray& v, const char* fieldname if (free_data) FreePIOData(*Pio_field); if (verbose) - std::cerr << "Set int64_t scalar field " << fieldname << "\n"; + std::cerr << "PIO_DATA::set_scalar_field Set int64_t scalar field " << fieldname << "\n"; return true; } v.resize(0); @@ -322,7 +336,7 @@ bool PIO_DATA::set_scalar_field(std::valarray& v, const char* fieldnam if (free_data) FreePIOData(*Pio_field); if (verbose) - std::cerr << "Set uint64_t scalar field " << fieldname << "\n"; + std::cerr << "PIO_DATA::set_scalar_field Set uint64_t scalar field " << fieldname << "\n"; return true; } v.resize(0); @@ -331,12 +345,73 @@ bool PIO_DATA::set_scalar_field(std::valarray& v, const char* fieldnam bool PIO_DATA::set_scalar_field(std::valarray& v, const char* fieldname) { + // if xdt ydt zdt rho is not in the varMMap so we have to derive it. + // It needs Momentum and Mass element wise divide and returned in v + // "cell_momentum" & "mass" + // If we are given a derived field that does not exist in the PIO file, we have to derive it + // Each derived field (diagnostic) is derived from prognostic fields(fields required for restart) + // Each will have a different calculation to create the derived field from the prognostics + // We therefore, have to "catch" the attempt to request a diagnostic field, check if it exists, + // if so, return that, if not calculate it and return that. + if (strcmp(fieldname, "xdt") == 0 && VarMMap.count(fieldname) != 1) + { + std::valarray> cell_momentum; + std::valarray mass; + set_vector_field(cell_momentum, "cell_momentum"); + set_scalar_field(mass, "mass"); + v = cell_momentum[0] / mass; + return true; + } + if (strcmp(fieldname, "ydt") == 0 && VarMMap.count(fieldname) != 1) + { + std::valarray> cell_momentum; + std::valarray mass; + set_vector_field(cell_momentum, "cell_momentum"); + set_scalar_field(mass, "mass"); + if (cell_momentum.size() >= 2) + { + v = cell_momentum[1] / mass; + return true; + } + else + { + v.resize(0); + return false; + } + } + if (strcmp(fieldname, "zdt") == 0 && VarMMap.count(fieldname) != 1) + { + std::valarray> cell_momentum; + std::valarray mass; + set_vector_field(cell_momentum, "cell_momentum"); + set_scalar_field(mass, "mass"); + if (cell_momentum.size() >= 3) + { + v = cell_momentum[2] / mass; + return true; + } + else + { + v.resize(0); + return false; + } + } + if (strcmp(fieldname, "rho") == 0 && VarMMap.count(fieldname) != 1) + { + std::valarray vcell; + std::valarray mass; + set_scalar_field(vcell, "vcell"); + set_scalar_field(mass, "mass"); + v = mass / vcell; + return true; + } if (VarMMap.count(fieldname) != 1) { v.resize(0); return false; } PIO_FIELD* Pio_field = VarMMap.equal_range(fieldname).first->second; + bool free_data = (Pio_field->data == nullptr); const double* cl = GetPIOData(*Pio_field); if (cl != nullptr) @@ -369,7 +444,7 @@ bool PIO_DATA::set_scalar_field(std::valarray& v, const char* fieldname) if (FreePf) FreePIOData(*Pf); if (verbose) - std::cerr << "Set double scalar field " << fieldname << "\n"; + std::cerr << "PIO_DATA::set_scalar_field Set double scalar field " << fieldname << "\n"; return true; } v.resize(0); @@ -378,6 +453,8 @@ bool PIO_DATA::set_scalar_field(std::valarray& v, const char* fieldname) bool PIO_DATA::set_vector_field(std::valarray>& v, const char* fieldname) { + // count the number of times the fieldname appears in VarMMap + // this is the dimension of the array that needs to be created uint32_t numdim = static_cast(VarMMap.count(fieldname)); if (numdim <= 0) { @@ -432,7 +509,7 @@ bool PIO_DATA::set_vector_field(std::valarray>& v, const c if (FreePf) FreePIOData(*Pf); if (verbose) - std::cerr << "Set double vector field " << fieldname << "\n"; + std::cerr << "PIO_DATA::set_vector_field Set double vector field " << fieldname << "\n"; return true; } // End PIO_DATA::set_vector_field diff --git a/IO/PIO/Testing/Python/TestPIOReader.py b/IO/PIO/Testing/Python/TestPIOReader.py index 5c58232ceeab..b62378637f6e 100755 --- a/IO/PIO/Testing/Python/TestPIOReader.py +++ b/IO/PIO/Testing/Python/TestPIOReader.py @@ -12,7 +12,7 @@ pioreader.SetFileName("" + str(VTK_DATA_ROOT) + "/Data/PIO/simple.pio") pioreader.UpdateInformation() # confirm default arrays are enabled -default_arrays = ["tev", "pres", "rho", "rade", "cell_energy", "kemax", +default_arrays = ["tev", "pres", "rade", "cell_energy", "kemax", "vel", "eng"] selection = pioreader.GetCellDataArraySelection() for name in default_arrays: -- GitLab From 286af1e8feba82c998548ccdca40dcf91590ee07 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Thu, 19 May 2022 14:45:06 +0200 Subject: [PATCH 0230/1015] Correctly exclude TestGlyph3DMapperMasking --- .gitlab/ci/ctest_exclusions.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab/ci/ctest_exclusions.cmake b/.gitlab/ci/ctest_exclusions.cmake index 43efe3fd94c4..fb2ac3741d54 100644 --- a/.gitlab/ci/ctest_exclusions.cmake +++ b/.gitlab/ci/ctest_exclusions.cmake @@ -241,7 +241,7 @@ if ("$ENV{CMAKE_CONFIGURATION}" MATCHES "stdthread") # Masking is inconsistent with STDThread # See #18549 - "^VTK::RenderingOpenGL2Cxx-TestGlyph3DMapperMasking$" + "^VTK::RenderingCoreCxx-TestGlyph3DMapperMasking$" # Test fails sometimes with STDThread # See #18555 -- GitLab From 3a85331b1ba1ab3cc4fef3637d6a9a281bf448a0 Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Thu, 19 May 2022 11:24:39 -0400 Subject: [PATCH 0231/1015] 32 bit cell array converter fix In a few files, the `vtkCellArray` of `vtkUnstructuredGrid` or `vtkPolyData` was set to 32 bits if there were less than 2^32 points. Since point ids are signed integers, we can only use 31 bits on a 32 bits array to store point ids. So now the conversion to 32 bits is done if there are less than 2^31 points. --- Common/DataModel/vtkPolyData.cxx | 2 +- Common/DataModel/vtkUnstructuredGrid.cxx | 2 +- Filters/Core/vtkExtractCellsAlongPolyLine.cxx | 2 +- Parallel/DIY/vtkDIYGhostUtilities.cxx | 8 ++++---- 4 files changed, 7 insertions(+), 7 deletions(-) diff --git a/Common/DataModel/vtkPolyData.cxx b/Common/DataModel/vtkPolyData.cxx index 2afbf32133b2..e288560f8eb4 100644 --- a/Common/DataModel/vtkPolyData.cxx +++ b/Common/DataModel/vtkPolyData.cxx @@ -1594,7 +1594,7 @@ void vtkPolyData::RemoveGhostCells() vtkCellData* newCellData = newPD->GetCellData(); #ifdef VTK_USE_64BIT_IDS - if (!(numPoints >> 32)) + if (!(numPoints >> 31)) { newVerts->ConvertTo32BitStorage(); newLines->ConvertTo32BitStorage(); diff --git a/Common/DataModel/vtkUnstructuredGrid.cxx b/Common/DataModel/vtkUnstructuredGrid.cxx index 2f6c7900757e..16b776a2bb5b 100644 --- a/Common/DataModel/vtkUnstructuredGrid.cxx +++ b/Common/DataModel/vtkUnstructuredGrid.cxx @@ -2339,7 +2339,7 @@ void vtkUnstructuredGrid::RemoveGhostCells() vtkNew newCells; #ifdef VTK_USE_64BIT_IDS - if (!(this->GetNumberOfPoints() >> 32)) + if (!(this->GetNumberOfPoints() >> 31)) { newCells->ConvertTo32BitStorage(); } diff --git a/Filters/Core/vtkExtractCellsAlongPolyLine.cxx b/Filters/Core/vtkExtractCellsAlongPolyLine.cxx index 7995b11d601c..de1c54c6edfe 100644 --- a/Filters/Core/vtkExtractCellsAlongPolyLine.cxx +++ b/Filters/Core/vtkExtractCellsAlongPolyLine.cxx @@ -662,7 +662,7 @@ int ExtractCells(vtkExtractCellsAlongPolyLine* self, vtkDataSet* input, vtkPoint vtkNew outputCellTypes; #ifdef VTK_USE_64BIT_IDS - if (!(numberOfPoints >> 32)) + if (!(numberOfPoints >> 31)) { outputCells->ConvertTo32BitStorage(); } diff --git a/Parallel/DIY/vtkDIYGhostUtilities.cxx b/Parallel/DIY/vtkDIYGhostUtilities.cxx index 1d979b5be21b..dc50bda273ef 100644 --- a/Parallel/DIY/vtkDIYGhostUtilities.cxx +++ b/Parallel/DIY/vtkDIYGhostUtilities.cxx @@ -2770,7 +2770,7 @@ void FillUnstructuredDataTopologyBuffer( // We're being careful to account for different storage options in cell arrays #ifdef VTK_USE_64BIT_IDS - if (!(maxPointId >> 32)) + if (!(maxPointId >> 31)) { cellArray->ConvertTo32BitStorage(); } @@ -2825,7 +2825,7 @@ void FillUnstructuredDataTopologyBuffer( // We're being careful to account for different storage options in cell arrays #ifdef VTK_USE_64BIT_IDS - if (!(maxPointId >> 32)) + if (!(maxPointId >> 31)) { cells->ConvertTo32BitStorage(); } @@ -4532,7 +4532,7 @@ void DeepCopyInputAndAllocateGhosts(::UnstructuredGridBlock* block, // We're being careful to account for different storage options in cell arrays #ifdef VTK_USE_64BIT_IDS - if (!(numberOfPoints >> 32)) + if (!(numberOfPoints >> 31)) { outputCellArray->ConvertTo32BitStorage(); } @@ -4614,7 +4614,7 @@ void DeepCopyInputAndAllocateGhosts(::PolyDataBlock* block, // We're being careful to account for different storage options in cell arrays #ifdef VTK_USE_64BIT_IDS - if (!(numberOfPoints >> 32)) + if (!(numberOfPoints >> 31)) { outputPolys->ConvertTo32BitStorage(); outputStrips->ConvertTo32BitStorage(); -- GitLab From e751543d4f906e8c24e6a1ab5be8189075e13afd Mon Sep 17 00:00:00 2001 From: Will Schroeder Date: Thu, 19 May 2022 12:26:21 -0400 Subject: [PATCH 0232/1015] Delegation/caching working --- Common/DataModel/vtkPolygon.cxx | 2 +- Common/DataModel/vtkPolygon.h | 2 +- .../Testing/Python/TestPolyDataPlaneCutter.py | 50 +++++- Filters/Core/vtkPlaneCutter.cxx | 27 ++- Filters/Core/vtkPlaneCutter.h | 17 +- Filters/Core/vtkPolyDataPlaneClipper.h | 22 ++- Filters/Core/vtkPolyDataPlaneCutter.cxx | 165 ++++++++++++++++-- Filters/Core/vtkPolyDataPlaneCutter.h | 29 +++ 8 files changed, 281 insertions(+), 33 deletions(-) diff --git a/Common/DataModel/vtkPolygon.cxx b/Common/DataModel/vtkPolygon.cxx index 2ac8958825e5..d369166a49a1 100644 --- a/Common/DataModel/vtkPolygon.cxx +++ b/Common/DataModel/vtkPolygon.cxx @@ -263,7 +263,7 @@ void vtkPolygon::ComputeNormal(int numPts, double* pts, double n[3]) // Determine whether or not a polygon is convex from a points list and a list // of point ids that index into the points list. Parameter pts can be nullptr, // indicating that the polygon indexing is {0, 1, ..., numPts-1}. -bool vtkPolygon::IsConvex(vtkPoints* p, int numPts, vtkIdType* pts) +bool vtkPolygon::IsConvex(vtkPoints* p, int numPts, const vtkIdType* pts) { int i; double v[3][3], *v0 = v[0], *v1 = v[1], *v2 = v[2], *tmp, a[3], aMag, b[3], bMag; diff --git a/Common/DataModel/vtkPolygon.h b/Common/DataModel/vtkPolygon.h index 6f856d1e23ac..be3f1e00ceaf 100644 --- a/Common/DataModel/vtkPolygon.h +++ b/Common/DataModel/vtkPolygon.h @@ -119,7 +119,7 @@ public: * Determine whether or not a polygon is convex. If pts=nullptr, point indexing * is assumed to be {0, 1, ..., numPts-1}. */ - static bool IsConvex(vtkPoints* p, int numPts, vtkIdType* pts); + static bool IsConvex(vtkPoints* p, int numPts, const vtkIdType* pts); static bool IsConvex(vtkIdTypeArray* ids, vtkPoints* p); static bool IsConvex(vtkPoints* p); ///@} diff --git a/Filters/Core/Testing/Python/TestPolyDataPlaneCutter.py b/Filters/Core/Testing/Python/TestPolyDataPlaneCutter.py index 4f374aef982b..f8945063e35a 100755 --- a/Filters/Core/Testing/Python/TestPolyDataPlaneCutter.py +++ b/Filters/Core/Testing/Python/TestPolyDataPlaneCutter.py @@ -57,7 +57,7 @@ outlineMapper.SetInputConnection(outline.GetOutputPort()) outlineActor = vtk.vtkActor() outlineActor.SetMapper(outlineMapper) -# Accelerated cutter (uses a sphere tree) +# Accelerated cutter (uses a sphere tree, or vtkPolyDataPlaneCutter) cut = vtk.vtkPlaneCutter() cut.SetInputConnection(sphere.GetOutputPort()) cut.SetPlane(plane) @@ -102,26 +102,64 @@ cutter.Update() CT = cutter_timer.GetElapsedWallClockTime() print("vtkCutter:", CT) -# Time the execution of the filter w/ sphere tree +# Time the execution of the vtkPlaneCutter filter, including initial build +# (of the sphere tree, or convexity check) sCutter_timer = vtk.vtkExecutionTimer() sCutter_timer.SetFilter(cut) cut.Update() ST = sCutter_timer.GetElapsedWallClockTime() -print("vtkPlaneCutter (including build sphere tree):", ST) +print("vtkPlaneCutter (including internal structures build):", ST) -# Time the execution of the filter w/ sphere tree +# Time the execution of the vtkPlaneCutter filter after modifying plane plane.Modified() cut.Update() ST = sCutter_timer.GetElapsedWallClockTime() -print("vtkPlaneCutter (reuse sphere tree):", ST) +print("vtkPlaneCutter (reuse cached internal structures):", ST) -# Time subsequent cuts +# Time vtkPolyDataPlaneCutter nCutter_timer = vtk.vtkExecutionTimer() nCutter_timer.SetFilter(ncut) ncut.Update() SN = nCutter_timer.GetElapsedWallClockTime() print("vtkPolyDataPlaneCutter:", SN) +# Compute normals on; attributes off (just to make sure +# these options are working). +ncut.ComputeNormalsOn() +ncut.InterpolateAttributesOff() +ncut.Update() +SN = nCutter_timer.GetElapsedWallClockTime() +print("vtkPolyDataPlaneCutter (with normals, no attributes):", SN) + +# Finally, create some data to exercise the convexity check +cvxPData = vtk.vtkPolyData() +cvxPts = vtk.vtkPoints() +cvxPolys = vtk.vtkCellArray() +cvxPData.SetPoints(cvxPts) +cvxPData.SetPolys(cvxPolys) + +cvxPts.SetNumberOfPoints(5) +cvxPts.SetPoint(0, 0,0,0) +cvxPts.SetPoint(1, 1,0,0) +cvxPts.SetPoint(2, 2,0,0) +cvxPts.SetPoint(3, 1,1,0) +cvxPts.SetPoint(4, 0,1,0) + +cell = [0,1,3,4] +cvxPolys.InsertNextCell(4,cell) +cell = [1,2,3] +cvxPolys.InsertNextCell(3,cell) + +print("Convex: (should be true): ", ncut.CanFullyProcessDataObject(cvxPData)) +assert ncut.CanFullyProcessDataObject(cvxPData) == True + +# Warp the quad +cvxPts.SetPoint(0,0.75,0.75,0) +cvxPts.Modified() + +print("Convex: (should be false): ", ncut.CanFullyProcessDataObject(cvxPData)) +assert ncut.CanFullyProcessDataObject(cvxPData) == False + # Add the actors to the renderer, set the background and size ren0.AddActor(outlineActor) ren0.AddActor(cutterActor) diff --git a/Filters/Core/vtkPlaneCutter.cxx b/Filters/Core/vtkPlaneCutter.cxx index 3ebb92a1450e..a34369d989a8 100644 --- a/Filters/Core/vtkPlaneCutter.cxx +++ b/Filters/Core/vtkPlaneCutter.cxx @@ -40,6 +40,7 @@ #include "vtkPlane.h" #include "vtkPointData.h" #include "vtkPolyData.h" +#include "vtkPolyDataPlaneCutter.h" #include "vtkRectilinearGrid.h" #include "vtkSMPThreadLocalObject.h" #include "vtkSMPTools.h" @@ -1603,6 +1604,8 @@ vtkPlaneCutter::vtkPlaneCutter() , GeneratePolygons(true) , BuildTree(true) , BuildHierarchy(true) + , DataChanged(true) + , IsPolyDataConvex(false) { this->InputInfo = vtkInputInfo(nullptr, 0); } @@ -1711,10 +1714,12 @@ int vtkPlaneCutter::RequestData(vtkInformation* vtkNotUsed(request), vtkDebugMacro(<< "Executing plane cutter"); auto inputDO = vtkDataObject::GetData(inputVector[0], 0); // reset sphere trees if the input has changed + this->DataChanged = false; if (this->InputInfo.Input != inputDO || this->InputInfo.LastMTime != inputDO->GetMTime()) { this->InputInfo = vtkInputInfo(inputDO, inputDO->GetMTime()); this->SphereTrees.clear(); + this->DataChanged = true; } if (auto inputMB = vtkMultiBlockDataSet::SafeDownCast(inputDO)) @@ -1885,7 +1890,6 @@ int vtkPlaneCutter::ExecuteDataSet(vtkDataSet* input, vtkSphereTree* tree, vtkPo // let flying edges do the work vtkNew flyingEdges; - flyingEdges->SetPlane(this->Plane); vtkNew xPlane; xPlane->SetOrigin(planeOrigin); xPlane->SetNormal(planeNormal); @@ -1918,10 +1922,29 @@ int vtkPlaneCutter::ExecuteDataSet(vtkDataSet* input, vtkSphereTree* tree, vtkPo // of convexity so it only needs be done once if the input does not change. if (vtkPolyData::SafeDownCast(input)) { + if (this->DataChanged) // cache convexity check - it can be expensive + { + this->IsPolyDataConvex = vtkPolyDataPlaneCutter::CanFullyProcessDataObject(input); + } + if (this->IsPolyDataConvex) + { + vtkNew xPlane; // create temp transformed plane + xPlane->SetNormal(planeNormal); + xPlane->SetOrigin(planeOrigin); + vtkNew planeCutter; + planeCutter->SetInputData(input); + planeCutter->SetPlane(xPlane); + planeCutter->SetComputeNormals(this->ComputeNormals); + planeCutter->SetInterpolateAttributes(this->InterpolateAttributes); + planeCutter->Update(); + vtkDataSet* outPlane = planeCutter->GetOutput(); + output->ShallowCopy(outPlane); + return 1; + } } // If here, then we use more general methods to produce the cut. - // Prepare the output + // This means building a sphere tree. if (tree) { tree->SetBuildHierarchy(this->BuildHierarchy); diff --git a/Filters/Core/vtkPlaneCutter.h b/Filters/Core/vtkPlaneCutter.h index 52512258e9e1..0365723f1aff 100644 --- a/Filters/Core/vtkPlaneCutter.h +++ b/Filters/Core/vtkPlaneCutter.h @@ -22,12 +22,14 @@ * exploratory, fast workflow. It produces output polygons that result from * cutting the input dataset with the specified plane. * - * This algorithm is fast because it is threaded, and may build (in a + * This algorithm is fast because it is threaded, it may delegate to a + * high-performance cutting algorithm, and/or it may build (in a * preprocessing step) a spatial search structure that accelerates the plane * cuts. The search structure, which is typically a sphere tree, is used to - * quickly cull candidate cells. (Note that certain types of input data are - * delegated to other, internal classes; for example image data is delegated - * to vtkFlyingEdgesPlaneCutter.) + * quickly cull candidate cells. As mentioned, certain types of input data + * are delegated to other, internal classes--for example image data is + * delegated to vtkFlyingEdgesPlaneCutter, and convex vtkPolyData is + * delegated to vtkPolyDataPlaneCutter. * * Because this filter may build an initial data structure during a * preprocessing step, the first execution of the filter may take longer than @@ -136,7 +138,7 @@ public: /** * Indicate whether to interpolate attribute data. By default this is * enabled. Note that both cell data and point data is interpolated and - * outputted, except for image data input where only point data are outputted. + * output, except for image data input where only point data are output. */ vtkSetMacro(InterpolateAttributes, bool); vtkGetMacro(InterpolateAttributes, bool); @@ -190,6 +192,11 @@ protected: bool BuildHierarchy; // Helpers + // Support delegation to vtkPolyDataPlaneCutter. Checking convexity can be + // time consuming. + bool DataChanged; + bool IsPolyDataConvex; + vtkSphereTree* GetSphereTree(vtkDataSet*); std::map> SphereTrees; struct vtkInputInfo diff --git a/Filters/Core/vtkPolyDataPlaneClipper.h b/Filters/Core/vtkPolyDataPlaneClipper.h index 922405965a6a..274bbd02d8c5 100644 --- a/Filters/Core/vtkPolyDataPlaneClipper.h +++ b/Filters/Core/vtkPolyDataPlaneClipper.h @@ -34,6 +34,11 @@ * cap(s) will be generated. * * @warning + * The method CanFullyProcessDataObject() is available to see whether the + * input data can be successully processed by this filter. Use this method + * sparingly because it can be slow. + * + * @warning * This class has been threaded with vtkSMPTools. Using TBB or other * non-sequential type (set in the CMake variable * VTK_SMP_IMPLEMENTATION_TYPE) may improve performance significantly. @@ -49,7 +54,8 @@ #include "vtkFiltersCoreModule.h" // For export macro #include "vtkPlane.h" // For clipping plane #include "vtkPolyDataAlgorithm.h" -#include "vtkSmartPointer.h" // For SmartPointer +#include "vtkPolyDataPlaneCutter.h" // For CanFullyProcessDataObject() method +#include "vtkSmartPointer.h" // For SmartPointer class VTKFILTERSCORE_EXPORT vtkPolyDataPlaneClipper : public vtkPolyDataAlgorithm { @@ -149,6 +155,20 @@ public: vtkGetMacro(BatchSize, unsigned int); ///@} + /** + * This helper method can be used to determine the if the input vtkPolyData + * contains convex polygonal cells, and therefore is suitable for + * processing by this filter. (The name of the method is consistent with + * other filters that perform similar operations.) This method returns true + * when the input contains only polygons (i.e., no verts, lines, or + * triangle strips); and each polygon is convex. It returns false + * otherwise. + */ + static bool CanFullyProcessDataObject(vtkDataObject* object) + { + return vtkPolyDataPlaneCutter::CanFullyProcessDataObject(object); + } + protected: vtkPolyDataPlaneClipper(); ~vtkPolyDataPlaneClipper() override; diff --git a/Filters/Core/vtkPolyDataPlaneCutter.cxx b/Filters/Core/vtkPolyDataPlaneCutter.cxx index 639a8826ae83..f15cf7eaf639 100644 --- a/Filters/Core/vtkPolyDataPlaneCutter.cxx +++ b/Filters/Core/vtkPolyDataPlaneCutter.cxx @@ -31,6 +31,7 @@ #include "vtkPointData.h" #include "vtkPoints.h" #include "vtkPolyData.h" +#include "vtkPolygon.h" #include "vtkSMPThreadLocal.h" #include "vtkSMPTools.h" #include "vtkStaticCellLinks.h" @@ -285,12 +286,12 @@ struct ExtractLines vtkIdType* LineConn; vtkIdType* LineOffsets; std::vector& Edges; - ArrayList& Arrays; + ArrayList* Arrays; vtkSMPThreadLocal> CellIterator; ExtractLines(EvaluateCells& ec, const std::vector& ptMap, vtkCellArray* cells, std::vector& cellMap, vtkIdTypeArray* lineConn, vtkIdTypeArray* lineOffsets, - std::vector& e, ArrayList& arrays) + std::vector& e, ArrayList* arrays) : EC(ec) , PtMap(ptMap) , Cells(cells) @@ -313,7 +314,7 @@ struct ExtractLines const std::vector& ptMap = this->PtMap; const std::vector& cellMap = this->CellMap; std::vector& edges = this->Edges; - ArrayList& arrays = this->Arrays; + ArrayList* arrays = this->Arrays; // For each batch, process the intersected cells in the batch. for (; batchNum < endBatchNum; ++batchNum) @@ -358,7 +359,11 @@ struct ExtractLines } // over all cell edges, with no more than 2 cuts *lineOffsets++ = lineOffset; lineOffset += 2; - arrays.Copy(cellId, lineNum++); + if (arrays) // generate cell data if requested + { + arrays->Copy(cellId, lineNum); + } + lineNum++; } // if cell is cut } // for each cell in this batch } // for each batch of cells @@ -452,7 +457,10 @@ struct OutputPointsWorker xout[0] = x0[0] + t * (x1[0] - x0[0]); xout[1] = x0[1] + t * (x1[1] - x0[1]); xout[2] = x0[2] + t * (x1[2] - x0[2]); - arrays->InterpolateEdge(edge->V0, edge->V1, t, newPtId); + if (arrays) // if interpolate attributes + { + arrays->InterpolateEdge(edge->V0, edge->V1, t, newPtId); + } } }); // end lambda } @@ -466,6 +474,8 @@ struct OutputPointsWorker vtkPolyDataPlaneCutter::vtkPolyDataPlaneCutter() { this->Plane = nullptr; + this->ComputeNormals = false; + this->InterpolateAttributes = true; this->OutputPointsPrecision = DEFAULT_PRECISION; this->BatchSize = 10000; } @@ -559,14 +569,18 @@ int vtkPolyDataPlaneCutter::RequestData(vtkInformation* vtkNotUsed(request), vtkNew lineOffsets; lineOffsets->SetNumberOfTuples(numLines + 1); - // Each line segment has cell data copied from the intersected cell. + // If requested, each line segment has cell data copied from the + // intersected cell. ArrayList cellArrays; - output->GetCellData()->InterpolateAllocate(input->GetCellData(), numLines); - cellArrays.AddArrays(numLines, input->GetCellData(), output->GetCellData()); + if (this->InterpolateAttributes) + { + output->GetCellData()->InterpolateAllocate(input->GetCellData(), numLines); + cellArrays.AddArrays(numLines, input->GetCellData(), output->GetCellData()); + } // Extract the line segments. - ExtractLines extLines( - evalCells, ptMap, cells, evalCells.CellMap, lineConn, lineOffsets, mergeEdges, cellArrays); + ExtractLines extLines(evalCells, ptMap, cells, evalCells.CellMap, lineConn, lineOffsets, + mergeEdges, (this->InterpolateAttributes ? &cellArrays : nullptr)); extLines.Execute(); lineOffsets->SetComponent(numLines, 0, 2 * numLines); @@ -606,30 +620,145 @@ int vtkPolyDataPlaneCutter::RequestData(vtkInformation* vtkNotUsed(request), outPts->SetNumberOfPoints(numOutPts); output->SetPoints(outPts); - // Prepare to copy / interpolate point data + // Prepare to copy / interpolate point data (if requested). ArrayList ptArrays; - output->GetPointData()->InterpolateAllocate(input->GetPointData(), numOutPts); - ptArrays.AddArrays(numOutPts, input->GetPointData(), output->GetPointData()); + if (this->InterpolateAttributes) + { + output->GetPointData()->InterpolateAllocate(input->GetPointData(), numOutPts); + ptArrays.AddArrays(numOutPts, input->GetPointData(), output->GetPointData()); + } // Generate the new points coordinates, and interpolate point data. using OutputPointsDispatch = vtkArrayDispatch::Dispatch2ByValueType; OutputPointsWorker opWorker; if (!OutputPointsDispatch::Execute(inPts->GetData(), outPts->GetData(), opWorker, numOutPts, - mergeEdges.data(), mergeOffsets, this->Plane, &ptArrays)) + mergeEdges.data(), mergeOffsets, this->Plane, + (this->InterpolateAttributes ? &ptArrays : nullptr))) { opWorker(inPts->GetData(), outPts->GetData(), numOutPts, mergeEdges.data(), mergeOffsets, - this->Plane, &ptArrays); + this->Plane, (this->InterpolateAttributes ? &ptArrays : nullptr)); + } + + // If normals requested, then create an array of point normals. + if (this->ComputeNormals) + { + vtkNew normals; // don't really need a lot of precision here + normals->SetNumberOfComponents(3); + normals->SetName("Normals"); + normals->SetNumberOfTuples(numOutPts); + double planeNormal[3]; + this->Plane->GetNormal(planeNormal); + vtkSMPTools::For(0, numOutPts, [&](vtkIdType begin, vtkIdType end) { + for (vtkIdType i = begin; i < end; ++i) + { + normals->SetTuple(i, planeNormal); + } + }); + output->GetPointData()->AddArray(normals); } return 1; } +// Support convexity check on input +namespace // begin anonymous namespace +{ + +struct CheckConvex +{ + vtkPoints* Points; + vtkCellArray* Polys; + vtkIdType NumPolys; + unsigned char IsConvex; // final, reduced result + + vtkSMPThreadLocal> PolyIterator; + vtkSMPThreadLocal isConvex; // per thread result + + CheckConvex(vtkPoints* pts, vtkCellArray* ca) + : Points(pts) + , Polys(ca) + , IsConvex(1) + { + this->NumPolys = ca->GetNumberOfCells(); + } + + void Initialize() + { + this->PolyIterator.Local().TakeReference(this->Polys->NewIterator()); + this->isConvex.Local() = 1; + } + + void operator()(vtkIdType cellId, vtkIdType endCellId) + { + vtkIdType npts; + const vtkIdType* pts; + vtkCellArrayIterator* polyIter = this->PolyIterator.Local(); + vtkPoints* p = this->Points; + + for (; cellId < endCellId && this->isConvex.Local(); ++cellId) + { + polyIter->GetCellAtId(cellId, npts, pts); + if (!vtkPolygon::IsConvex(p, npts, pts)) + { + this->isConvex.Local() = 0; + } + } + } + + void Reduce() + { + this->IsConvex = 1; + for (auto cItr = this->isConvex.begin(); cItr != this->isConvex.end(); ++cItr) + { + if (!*cItr) + { + this->IsConvex = 0; + } + } + } + + void Execute() { vtkSMPTools::For(0, this->NumPolys, *this); } + +}; // CheckConvex + +} // anonymous namespace + //------------------------------------------------------------------------------ -// Assess whether this data object can be processed by this filter. +// Assess whether the specified data object can be processed by this filter. The +// input data must be of type vtkPolyData, and contain only convex polygons. bool vtkPolyDataPlaneCutter::CanFullyProcessDataObject(vtkDataObject* object) { - return true; + // Perform some quick checks + auto pdata = vtkPolyData::SafeDownCast(object); + if (!pdata || pdata->GetVerts()->GetNumberOfCells() > 0 || + pdata->GetLines()->GetNumberOfCells() > 0 || pdata->GetStrips()->GetNumberOfCells() > 0) + { + return false; + } + + // If this is all triangles, then they are convex. This check is a bit of a + // hack, since we are looking for a connectivity array of size 3*numCells - + // there are cases where the data is degenerate when this might not hold + // (e.g., the polygons are lines and/or points, mixed together with quads + // etc). Of course in a degenerate case the cutting process will likely + // fail no matter what plane cutter is used. + vtkIdType numCells = pdata->GetPolys()->GetNumberOfCells(); + vtkIdType numConnIds = pdata->GetPolys()->GetNumberOfConnectivityIds(); + if (numConnIds == (3 * numCells)) + { + return true; + } + + // Okay, need to process cell-by-cell to determine if they are convex. + CheckConvex checkConvex(pdata->GetPoints(), pdata->GetPolys()); + checkConvex.Execute(); + if (checkConvex.IsConvex) + { + return true; + } + + return false; } //------------------------------------------------------------------------------ @@ -638,6 +767,8 @@ void vtkPolyDataPlaneCutter::PrintSelf(ostream& os, vtkIndent indent) this->Superclass::PrintSelf(os, indent); os << indent << "Plane: " << this->Plane << "\n"; + os << indent << "Compute Normals: " << (this->ComputeNormals ? "On\n" : "Off\n"); + os << indent << "Interpolate Attributes: " << (this->InterpolateAttributes ? "On\n" : "Off\n"); os << indent << "Output Points Precision: " << this->OutputPointsPrecision << "\n"; os << indent << "Batch Size: " << this->BatchSize << "\n"; } diff --git a/Filters/Core/vtkPolyDataPlaneCutter.h b/Filters/Core/vtkPolyDataPlaneCutter.h index 191768621956..d5ea9253fad5 100644 --- a/Filters/Core/vtkPolyDataPlaneCutter.h +++ b/Filters/Core/vtkPolyDataPlaneCutter.h @@ -29,6 +29,11 @@ * polygonal cells. * * @warning + * The method CanFullyProcessDataObject() is available to see whether the + * input data can be successully processed by this filter. Use this method + * sparingly because it can be slow. + * + * @warning * This class has been threaded with vtkSMPTools. Using TBB or other * non-sequential type (set in the CMake variable * VTK_SMP_IMPLEMENTATION_TYPE) may improve performance significantly. @@ -67,6 +72,28 @@ public: vtkGetObjectMacro(Plane, vtkPlane); ///@} + ///@{ + /** + * Set/Get the computation of normals. The normal generated is simply the + * cut plane normal. The normals are associated with the output points. By + * default the computation of normals is disabled. + */ + vtkSetMacro(ComputeNormals, bool); + vtkGetMacro(ComputeNormals, bool); + vtkBooleanMacro(ComputeNormals, bool); + ///@} + + ///@{ + /** + * Indicate whether to interpolate attribute data. By default this is + * enabled. Note that both cell data and point data is interpolated and + * output. + */ + vtkSetMacro(InterpolateAttributes, bool); + vtkGetMacro(InterpolateAttributes, bool); + vtkBooleanMacro(InterpolateAttributes, bool); + ///@} + ///@{ /** * Set/get the desired precision for the output points type. See the @@ -111,6 +138,8 @@ protected: ~vtkPolyDataPlaneCutter() override; vtkSmartPointer Plane; + bool ComputeNormals; + bool InterpolateAttributes; int OutputPointsPrecision; unsigned int BatchSize; -- GitLab From db5bbeda0a5dfe806132054ef9ed31b311302ca2 Mon Sep 17 00:00:00 2001 From: Sean McBride Date: Thu, 19 May 2022 13:53:45 -0400 Subject: [PATCH 0233/1015] Change update.sh to tag for/vtk-20220517-1.1.1 --- ThirdParty/theora/update.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ThirdParty/theora/update.sh b/ThirdParty/theora/update.sh index b0717cb7d25b..d063b21fcd0d 100755 --- a/ThirdParty/theora/update.sh +++ b/ThirdParty/theora/update.sh @@ -8,7 +8,7 @@ readonly name="theora" readonly ownership="theora Upstream " readonly subtree="ThirdParty/$name/vtk$name" readonly repo="https://gitlab.kitware.com/third-party/theora.git" -readonly tag="for/vtk-20211222-1.1.1" +readonly tag="for/vtk-20220517-1.1.1" readonly paths=" .gitattributes COPYING -- GitLab From df94d7c216d820b9cae3e20c3b0c53593435273e Mon Sep 17 00:00:00 2001 From: theora Upstream Date: Tue, 17 May 2022 21:10:53 -0400 Subject: [PATCH 0234/1015] theora 2022-05-17 (731becef) Code extracted from: https://gitlab.kitware.com/third-party/theora.git at commit 731becefbc8f1f7359d1b9972b6c6c72f994183b (for/vtk-20220517-1.1.1). --- lib/mathops.c | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/mathops.c b/lib/mathops.c index d3fb9091941c..0ae0aba05fed 100644 --- a/lib/mathops.c +++ b/lib/mathops.c @@ -125,7 +125,7 @@ int oc_ilog64(ogg_int64_t _v){ _v|=_v>>16; _v|=_v>>32; _v=(_v>>1)+1; - ret+=OC_DEBRUIJN_IDX64[_v*0x218A392CD3D5DBF>>58&0x3F]; + ret+=OC_DEBRUIJN_IDX64[_v*0x218A392CD3D5DBFU>>58&0x3F]; return ret; # endif # endif -- GitLab From 532297a26be234225e6e018413c79ffaa3a29a6a Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Wed, 18 May 2022 16:03:03 -0400 Subject: [PATCH 0235/1015] FindMEMKIND: remove version detection logic It only works on old 32bit Linux installs. `pkg-config` files are located in an arch-specific directory these days. --- CMake/FindMEMKIND.cmake | 11 +---------- Common/Core/CMakeLists.txt | 12 +++++++++--- Common/Core/vtkObjectBase.cxx | 2 +- 3 files changed, 11 insertions(+), 14 deletions(-) diff --git a/CMake/FindMEMKIND.cmake b/CMake/FindMEMKIND.cmake index 6e00840d20c7..be678b2dfc4e 100644 --- a/CMake/FindMEMKIND.cmake +++ b/CMake/FindMEMKIND.cmake @@ -50,14 +50,6 @@ find_package_handle_standard_args(MEMKIND if(MEMKIND_FOUND) set(MEMKIND_LIBRARIES ${MEMKIND_LIBRARY}) set(MEMKIND_INCLUDE_DIRS ${MEMKIND_INCLUDE_DIR}) - set(pkgconfigfile "${MEMKIND_INCLUDE_DIR}/../lib/pkgconfig/memkind.pc") - set(MEMKIND_VERSION_MINOR 0) - if(EXISTS "${pkgconfigfile}") - file(STRINGS "${pkgconfigfile}" MEMKIND_VERSION_LINE REGEX "Version: ") - string(SUBSTRING "${MEMKIND_VERSION_LINE}" 11 -1 MEMKIND_VERSION_STRING) # skip over "Version: ?.", I wouldn't expect >9 major versions - string(FIND "${MEMKIND_VERSION_STRING}" "." minorNumLen) - string(SUBSTRING "${MEMKIND_VERSION_STRING}" 0 ${minorNumLen} MEMKIND_VERSION_MINOR) - endif() if(NOT TARGET MEMKIND::MEMKIND) add_library(MEMKIND::MEMKIND UNKNOWN IMPORTED) @@ -65,7 +57,6 @@ if(MEMKIND_FOUND) IMPORTED_LINK_INTERFACE_LANGUAGES "C" IMPORTED_LOCATION "${MEMKIND_LIBRARY}" IMPORTED_IMPLIB "${MEMKIND_LIBRARY}" - INTERFACE_INCLUDE_DIRECTORIES "${MEMKIND_INCLUDE_DIRS}" - MEMKIND_VERSION_MINOR "${MEMKIND_VERSION_MINOR}") + INTERFACE_INCLUDE_DIRECTORIES "${MEMKIND_INCLUDE_DIRS}") endif() endif() diff --git a/Common/Core/CMakeLists.txt b/Common/Core/CMakeLists.txt index 06cc37ff3535..54902b950d09 100644 --- a/Common/Core/CMakeLists.txt +++ b/Common/Core/CMakeLists.txt @@ -59,9 +59,15 @@ if (VTK_USE_MEMKIND) PACKAGE MEMKIND) list(APPEND vtk_memkind_libraries MEMKIND::MEMKIND) - get_target_property(memkind_version_minor MEMKIND::MEMKIND MEMKIND_VERSION_MINOR) - list(APPEND vtk_object_base_defines "MEMKIND_VERSION_MINOR=${memkind_version_minor}") -endif() + # XXX(memkind-1.10): Once 1.10 is required, this is always true. + file(READ "${MEMKIND_INCLUDE_DIR}/memkind.h" memkind_h_contents) + set(memkind_has_dax_kmem 0) + # Look for the symbol in the header. + if (memkind_h_contents MATCHES " MEMKIND_DAX_KMEM[ ;\n]") + set(memkind_has_dax_kmem 1) + endif () + list(APPEND vtk_object_base_defines "VTK_MEMKIND_HAS_DAX_KMEM=$") +endif () # Generate the vtkTypeList_Create macros: include("${CMAKE_CURRENT_SOURCE_DIR}/vtkCreateTypeListMacros.cmake") diff --git a/Common/Core/vtkObjectBase.cxx b/Common/Core/vtkObjectBase.cxx index a6ee1db825d8..e06ef845bea6 100644 --- a/Common/Core/vtkObjectBase.cxx +++ b/Common/Core/vtkObjectBase.cxx @@ -396,7 +396,7 @@ void vtkObjectBase::SetMemkindDirectory(const char* directoryname) { if (!strncmp(directoryname, "DAX_KMEM", 8)) { -#if MEMKIND_VERSION_MINOR > 9 +#if VTK_MEMKIND_HAS_DAX_KMEM MemkindHandle = MEMKIND_DAX_KMEM; #else vtkGenericWarningMacro(<< "Warning, DAX_KMEM requires memkind >= 1.10"); -- GitLab From d77278713a21e8163b38d7037cda54c28adcd2ab Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Wed, 18 May 2022 16:03:36 -0400 Subject: [PATCH 0236/1015] FindMEMKIND: quote variable expansions --- CMake/FindMEMKIND.cmake | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CMake/FindMEMKIND.cmake b/CMake/FindMEMKIND.cmake index be678b2dfc4e..3ada697f70e7 100644 --- a/CMake/FindMEMKIND.cmake +++ b/CMake/FindMEMKIND.cmake @@ -48,8 +48,8 @@ find_package_handle_standard_args(MEMKIND # Copy the results to the output variables and target. if(MEMKIND_FOUND) - set(MEMKIND_LIBRARIES ${MEMKIND_LIBRARY}) - set(MEMKIND_INCLUDE_DIRS ${MEMKIND_INCLUDE_DIR}) + set(MEMKIND_LIBRARIES "${MEMKIND_LIBRARY}") + set(MEMKIND_INCLUDE_DIRS "${MEMKIND_INCLUDE_DIR}") if(NOT TARGET MEMKIND::MEMKIND) add_library(MEMKIND::MEMKIND UNKNOWN IMPORTED) -- GitLab From 93d9c24456fd1910db9f1617509a19f1acdfaa8b Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Wed, 18 May 2022 16:04:07 -0400 Subject: [PATCH 0237/1015] FindMEMKIND: remove unnecessary setting `IMPORTED_IMPLIB` only makes sense for `SHARED` imported libraries. --- CMake/FindMEMKIND.cmake | 1 - 1 file changed, 1 deletion(-) diff --git a/CMake/FindMEMKIND.cmake b/CMake/FindMEMKIND.cmake index 3ada697f70e7..ea70699f8c4e 100644 --- a/CMake/FindMEMKIND.cmake +++ b/CMake/FindMEMKIND.cmake @@ -56,7 +56,6 @@ if(MEMKIND_FOUND) set_target_properties(MEMKIND::MEMKIND PROPERTIES IMPORTED_LINK_INTERFACE_LANGUAGES "C" IMPORTED_LOCATION "${MEMKIND_LIBRARY}" - IMPORTED_IMPLIB "${MEMKIND_LIBRARY}" INTERFACE_INCLUDE_DIRECTORIES "${MEMKIND_INCLUDE_DIRS}") endif() endif() -- GitLab From b3f6d023abe5d53edfb5b3374dde2a4dec5011d8 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Thu, 19 May 2022 07:44:58 -0400 Subject: [PATCH 0238/1015] FindMEMKIND: install into the CMake package Reported on Discourse: https://discourse.vtk.org/t/findmemkind-cmake-support/8524 --- CMake/vtkInstallCMakePackage.cmake | 1 + 1 file changed, 1 insertion(+) diff --git a/CMake/vtkInstallCMakePackage.cmake b/CMake/vtkInstallCMakePackage.cmake index dae8f9e5cb77..be1da9224850 100644 --- a/CMake/vtkInstallCMakePackage.cmake +++ b/CMake/vtkInstallCMakePackage.cmake @@ -95,6 +95,7 @@ set(vtk_cmake_module_files FindLibXml2.cmake FindLZ4.cmake FindLZMA.cmake + FindMEMKIND.cmake Findmpi4py.cmake FindMySQL.cmake FindNetCDF.cmake -- GitLab From 7f82f07e52ba9ddd7f0c4f23f67090db49540d72 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Thu, 19 May 2022 17:52:46 -0400 Subject: [PATCH 0239/1015] vtkMappedUnstructuredGrid: fix syntax in the docs The `*` triggers italics without literal wrappers. --- Common/DataModel/vtkMappedUnstructuredGrid.h | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Common/DataModel/vtkMappedUnstructuredGrid.h b/Common/DataModel/vtkMappedUnstructuredGrid.h index e2d9c6e09672..48e7f4380cfa 100644 --- a/Common/DataModel/vtkMappedUnstructuredGrid.h +++ b/Common/DataModel/vtkMappedUnstructuredGrid.h @@ -52,7 +52,7 @@ * - vtkIdType GetNumberOfCells() * - int GetCellType(vtkIdType cellId) * - void GetCellPoints(vtkIdType cellId, vtkIdList *ptIds) - * - void GetFaceStream(vtkIdType cellId, vtkIdList* ptIds) + * - void GetFaceStream(vtkIdType cellId, vtkIdList *ptIds) * - void GetPointCells(vtkIdType ptId, vtkIdList *cellIds) * - int GetMaxCellSize() * - void GetIdsOfCellsOfType(int type, vtkIdTypeArray *array) -- GitLab From bccd67627ec711e81b926311eee803971c7a4583 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Thu, 19 May 2022 17:53:54 -0400 Subject: [PATCH 0240/1015] CTestCustom: remove `em` warning exclusion --- CMake/CTestCustom.cmake.in | 1 - 1 file changed, 1 deletion(-) diff --git a/CMake/CTestCustom.cmake.in b/CMake/CTestCustom.cmake.in index 5438efba920e..e46f04d337dc 100644 --- a/CMake/CTestCustom.cmake.in +++ b/CMake/CTestCustom.cmake.in @@ -116,7 +116,6 @@ list(APPEND CTEST_CUSTOM_WARNING_EXCEPTION # Ignore some doxygen warnings "warning: Found ';' while parsing initializer list! \\(doxygen could be confused by a macro call without semicolon\\)" "warning: documented symbol 'template class .*' was not declared or defined." - "warning: found tag without matching " "warning: argument '.*' of command @param is not found in the argument list of" ) -- GitLab From 588832e8190f2710fbf7b2bbb88e73cdfa43c552 Mon Sep 17 00:00:00 2001 From: Ben Boeckel Date: Thu, 19 May 2022 17:55:32 -0400 Subject: [PATCH 0241/1015] Doxygen: teach Doxygen about 9.2.0 deprecations --- CMake/CTestCustom.cmake.in | 1 - Utilities/Doxygen/doxyfile.in | 1 + 2 files changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/CTestCustom.cmake.in b/CMake/CTestCustom.cmake.in index e46f04d337dc..e255497a7de1 100644 --- a/CMake/CTestCustom.cmake.in +++ b/CMake/CTestCustom.cmake.in @@ -114,7 +114,6 @@ list(APPEND CTEST_CUSTOM_WARNING_EXCEPTION "vtk[^\\.]+(Java|Python).cxx:.*\\[(readability-redundant-string-init)\\]" # Ignore some doxygen warnings - "warning: Found ';' while parsing initializer list! \\(doxygen could be confused by a macro call without semicolon\\)" "warning: documented symbol 'template class .*' was not declared or defined." "warning: argument '.*' of command @param is not found in the argument list of" ) diff --git a/Utilities/Doxygen/doxyfile.in b/Utilities/Doxygen/doxyfile.in index c5e5fcf49d3b..2070a0827853 100644 --- a/Utilities/Doxygen/doxyfile.in +++ b/Utilities/Doxygen/doxyfile.in @@ -198,4 +198,5 @@ PREDEFINED = "vtkSetMacro(name,type)= \ "VTK_DEPRECATED_IN_8_2_0(msg)=" \ "VTK_DEPRECATED_IN_9_0_0(msg)=" \ "VTK_DEPRECATED_IN_9_1_0(msg)=" \ + "VTK_DEPRECATED_IN_9_2_0(msg)=" \ "DOXYGEN_SHOULD_SKIP_THIS" -- GitLab From 969541c8d7a400c5475274feeef349ba5b950939 Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Thu, 19 May 2022 21:00:41 -0600 Subject: [PATCH 0242/1015] Add RenderingLICOpenGL2 to Rendering group This is to build it by default, if there's no strong reason not to. --- Rendering/LICOpenGL2/vtk.module | 2 ++ 1 file changed, 2 insertions(+) diff --git a/Rendering/LICOpenGL2/vtk.module b/Rendering/LICOpenGL2/vtk.module index 726af73f7162..a00ac5eba0c0 100644 --- a/Rendering/LICOpenGL2/vtk.module +++ b/Rendering/LICOpenGL2/vtk.module @@ -3,6 +3,8 @@ NAME LIBRARY_NAME vtkRenderingLICOpenGL2 IMPLEMENTABLE +GROUPS + Rendering DEPENDS VTK::CommonCore VTK::CommonDataModel -- GitLab From ac5cba8ca7db34fbb58cabc773bd00a2cb3189bc Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Fri, 20 May 2022 00:01:31 -0400 Subject: [PATCH 0243/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 7168dd0070e5..0fd767e1f529 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220519) +set(VTK_BUILD_VERSION 20220520) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From c328dd11c9dccd0c6f7e3c6d081f42d25433be9a Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 2 Mar 2022 10:03:06 -0500 Subject: [PATCH 0244/1015] vtkPointDataToCellData: Multithread categorical execution --- Filters/Core/vtkPointDataToCellData.cxx | 187 +++++++++++------- .../Extraction/vtkExtractVectorComponents.h | 5 + Filters/General/vtkMergeVectorComponents.h | 5 + 3 files changed, 130 insertions(+), 67 deletions(-) diff --git a/Filters/Core/vtkPointDataToCellData.cxx b/Filters/Core/vtkPointDataToCellData.cxx index 3479f4decd09..ca093f7b9bc5 100644 --- a/Filters/Core/vtkPointDataToCellData.cxx +++ b/Filters/Core/vtkPointDataToCellData.cxx @@ -14,12 +14,7 @@ =========================================================================*/ #include "vtkPointDataToCellData.h" -#include -#include -#include -#include -#include - +#include "vtkArrayDispatch.h" #include "vtkArrayListTemplate.h" #include "vtkCellData.h" #include "vtkDataArray.h" @@ -33,40 +28,49 @@ #include "vtkSMPThreadLocalObject.h" #include "vtkSMPTools.h" +#include +#include +#include +#include +#include + #define VTK_EPSILON 1.e-6 // Anonymous namespace namespace { - -struct PointDataToCellData +//------------------------------------------------------------------------------ +class PointDataToCellDataFunctor { +private: vtkDataSet* Input; vtkPointData* InPD; vtkCellData* OutCD; ArrayList Arrays; - vtkSMPThreadLocal> CellPts; // scratch array + vtkSMPThreadLocalObject TLCellPts; // scratch array - PointDataToCellData(vtkDataSet* input, vtkPointData* inPD, vtkCellData* outCD) +public: + PointDataToCellDataFunctor(vtkDataSet* input, vtkPointData* inPD, vtkCellData* outCD) : Input(input) , InPD(inPD) , OutCD(outCD) { vtkIdType numCells = input->GetNumberOfCells(); this->Arrays.AddArrays(numCells, inPD, outCD); - } - void Initialize() - { - this->CellPts.Local().TakeReference(vtkIdList::New()); - this->CellPts.Local()->Allocate(128); + // call everything we will call on the data object on the main thread first + // so that it can build its caching structures + vtkNew cell; + this->Input->GetCell(0, cell); } - void operator()(vtkIdType cellId, vtkIdType endCellId) + void Initialize() { this->TLCellPts.Local()->Allocate(128); } + + void operator()(vtkIdType beginCellId, vtkIdType endCellId) { - vtkIdList* cellPts = this->CellPts.Local(); + auto& cellPts = this->TLCellPts.Local(); - for (; cellId < endCellId; ++cellId) + for (vtkIdType cellId = beginCellId; cellId < endCellId; ++cellId) { this->Input->GetCellPoints(cellId, cellPts); vtkIdType numPts = cellPts->GetNumberOfIds(); @@ -84,7 +88,8 @@ struct PointDataToCellData void Reduce() {} }; -// Used to process categroical data +//------------------------------------------------------------------------------ +// Used to process categorical data class Histogram { public: @@ -113,11 +118,9 @@ public: typedef std::vector HistogramBins; typedef HistogramBins::iterator BinIt; - Histogram(vtkIdType size) - { - // Construct the array of bins. - this->Bins.assign(size + 1, Histogram::Init); - } + Histogram() = default; + + void Initialize(vtkIdType size) { this->Bins.assign(size + 1, Histogram::Init); } // Reset the fields of the bins in the histogram. void Reset(vtkIdType size) @@ -149,8 +152,10 @@ public: vtkIdType Counter; }; +//------------------------------------------------------------------------------ Histogram::Bin Histogram::Init(-1, 1, std::numeric_limits::max()); +//------------------------------------------------------------------------------ bool BinCountCmp(const Histogram::Bin& b1, const Histogram::Bin& b2) { if (b1.Count < b2.Count) @@ -167,6 +172,7 @@ bool BinCountCmp(const Histogram::Bin& b1, const Histogram::Bin& b2) } } +//------------------------------------------------------------------------------ vtkIdType Histogram::IndexOfLargestBin() { // If there is only one datapoint, return its index @@ -184,7 +190,7 @@ vtkIdType Histogram::IndexOfLargestBin() for (; (*it2).Assigned() && it2 != this->Bins.end(); ++it2) { // If the adjacent bins are close enough to be merged... - if (fabs((*it1).Value - (*it2).Value) < VTK_EPSILON) + if (std::abs((*it1).Value - (*it2).Value) < VTK_EPSILON) { //...then increment the count of the first bin. We need not worry about // the count of the second bin, since it will remain 1 and will therefore @@ -204,14 +210,97 @@ vtkIdType Histogram::IndexOfLargestBin() return std::max_element(this->Bins.begin(), it2, BinCountCmp)->Index; } +//------------------------------------------------------------------------------ +template +class PointDataToCellDataCategoricalFunctor +{ +private: + vtkDataSet* Input; + vtkPointData* InPD; + vtkCellData* OutCD; + ArrayType* Scalars; + using ScalarsValueT = vtk::GetAPIType; + + ArrayList Arrays; + int MaxCellSize; + vtkSMPThreadLocal TLHistogram; + vtkSMPThreadLocalObject TLCellPts; + +public: + PointDataToCellDataCategoricalFunctor( + vtkDataSet* input, vtkPointData* inPD, vtkCellData* outCD, ArrayType* scalars) + : Input(input) + , InPD(inPD) + , OutCD(outCD) + , Scalars(scalars) + { + vtkIdType numCells = input->GetNumberOfCells(); + this->Arrays.AddArrays(numCells, inPD, outCD); + + this->MaxCellSize = input->GetMaxCellSize(); + // call everything we will call on the data object on the main thread first + // so that it can build its caching structures + vtkNew cell; + this->Input->GetCell(0, cell); + } + + void Initialize() + { + this->TLHistogram.Local().Initialize(this->MaxCellSize); + this->TLCellPts.Local()->Allocate(this->MaxCellSize); + } + + void operator()(vtkIdType beginCellId, vtkIdType endCellId) + { + auto& cellPts = this->TLCellPts.Local(); + auto& histogram = this->TLHistogram.Local(); + const auto scalars = vtk::DataArrayValueRange<1>(this->Scalars); + + for (vtkIdType cellId = beginCellId; cellId < endCellId; cellId++) + { + this->Input->GetCellPoints(cellId, cellPts); + vtkIdType numPts = cellPts->GetNumberOfIds(); + + if (numPts == 0) + { + continue; + } + + // Populate a histogram from the scalar values at each + // point, and then select the bin with the most elements. + histogram.Reset(numPts); + for (vtkIdType ptId = 0; ptId < numPts; ++ptId) + { + auto pointId = cellPts->GetId(ptId); + histogram.Fill(pointId, static_cast(scalars[pointId])); + } + this->Arrays.Copy(histogram.IndexOfLargestBin(), cellId); + } + } + + void Reduce() {} +}; + +//------------------------------------------------------------------------------ +struct PointDataToCellDataCategoricalWorker +{ + template + void operator()(ArrayType* scalars, vtkDataSet* input, vtkPointData* inPD, vtkCellData* outCD) + { + PointDataToCellDataCategoricalFunctor pd2cd(input, inPD, outCD, scalars); + vtkSMPTools::For(0, input->GetNumberOfCells(), pd2cd); + } +}; } // End anonymous namespace +//------------------------------------------------------------------------------ class vtkPointDataToCellData::Internals { public: std::set PointDataArrays; }; +//------------------------------------------------------------------------------ vtkStandardNewMacro(vtkPointDataToCellData); //------------------------------------------------------------------------------ @@ -349,53 +438,17 @@ int vtkPointDataToCellData::RequestData( // Create a threaded fast path for non-categorical data. if (!this->CategoricalData) { - // Note vtkPolyData::BuildCells() is not thread safe, preemptively call it - if (input->IsA("vtkPolyData")) - { - vtkPolyData::SafeDownCast(input)->BuildCells(); - } - // Thread the process - PointDataToCellData pd2cd(input, inPD, outCD); + PointDataToCellDataFunctor pd2cd(input, inPD, outCD); vtkSMPTools::For(0, numCells, pd2cd); - } // fastpath - no categorical data - - // Slow path when histograms need to be built, and hence nearest neighbor - // interpolation. + } + // Create a threaded fast path for categorical data. else { - const int maxCellSize = input->GetMaxCellSize(); - Histogram hist(maxCellSize); - vtkNew cellPts; - cellPts->Allocate(maxCellSize); - - int abort = 0; - vtkIdType progressInterval = numCells / 20 + 1; - for (cellId = 0; cellId < numCells && !abort; cellId++) + PointDataToCellDataCategoricalWorker worker; + if (!vtkArrayDispatch::Dispatch::Execute(inPD->GetScalars(), worker, input, inPD, outCD)) { - if (!(cellId % progressInterval)) - { - this->UpdateProgress((double)cellId / numCells); - abort = GetAbortExecute(); - } - - input->GetCellPoints(cellId, cellPts); - numPts = cellPts->GetNumberOfIds(); - - if (numPts == 0) - { - continue; - } - - // Populate a histogram from the scalar values at each - // point, and then select the bin with the most elements. - hist.Reset(numPts); - for (ptId = 0; ptId < numPts; ptId++) - { - pointId = cellPts->GetId(ptId); - hist.Fill(pointId, input->GetPointData()->GetScalars()->GetTuple1(pointId)); - } - outCD->CopyData(inPD, hist.IndexOfLargestBin(), cellId); + worker(inPD->GetScalars(), input, inPD, outCD); } } // categorical data diff --git a/Filters/Extraction/vtkExtractVectorComponents.h b/Filters/Extraction/vtkExtractVectorComponents.h index ac33cdabff3e..fc19af0dba67 100644 --- a/Filters/Extraction/vtkExtractVectorComponents.h +++ b/Filters/Extraction/vtkExtractVectorComponents.h @@ -29,6 +29,11 @@ * This filter is unusual in that it creates multiple outputs. * If you use the GetOutput() method, you will be retrieving the x vector * component. + * + * @warning + * This class has been threaded with vtkSMPTools. Using TBB or other + * non-sequential type (set in the CMake variable + * VTK_SMP_IMPLEMENTATION_TYPE) may improve performance significantly. */ #ifndef vtkExtractVectorComponents_h diff --git a/Filters/General/vtkMergeVectorComponents.h b/Filters/General/vtkMergeVectorComponents.h index 8afcfec5dee4..e96dec2d3c86 100644 --- a/Filters/General/vtkMergeVectorComponents.h +++ b/Filters/General/vtkMergeVectorComponents.h @@ -21,6 +21,11 @@ * 3 components. The type of the output vector is vtkDoubleArray. The user * needs to define the names of the single-component arrays and the attribute-type * of the arrays, i.e. point-data or cell-data. + * + * @warning + * This class has been threaded with vtkSMPTools. Using TBB or other + * non-sequential type (set in the CMake variable + * VTK_SMP_IMPLEMENTATION_TYPE) may improve performance significantly. */ #ifndef vtkMergeVectorComponents_h -- GitLab From af9f16a29fe7daa424296a107a78ac40ecd4b39d Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 2 Mar 2022 10:06:30 -0500 Subject: [PATCH 0245/1015] Add changelog --- .../release/dev/multithread-vtkPointDataToCellData.md | 3 +++ 1 file changed, 3 insertions(+) create mode 100644 Documentation/release/dev/multithread-vtkPointDataToCellData.md diff --git a/Documentation/release/dev/multithread-vtkPointDataToCellData.md b/Documentation/release/dev/multithread-vtkPointDataToCellData.md new file mode 100644 index 000000000000..7442bdf69105 --- /dev/null +++ b/Documentation/release/dev/multithread-vtkPointDataToCellData.md @@ -0,0 +1,3 @@ +## Multithread vtkPointDataToCellData for categorical data + +`vtkPointDataToCellData` has been multithreaded when handling categorical data. -- GitLab From 66b33626dbdbf7bf2c483888a6a729f3f539904f Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Wed, 18 May 2022 15:05:23 +0200 Subject: [PATCH 0246/1015] Move parameter "ComputeNormalFromOpacity" in VolumeMapper Render parameter 'ComputeNormalFromOpacity' is now directly in vtkVolumeMapper. It is used by vtkGPUVolumeRayCastMapper, and also by vtkSmartVolumeMapper/vtkMultiBlockVolumeMapper (but only when the underlying mapper is the GPU mapper). --- Rendering/Volume/vtkGPUVolumeRayCastMapper.h | 17 -------------- Rendering/Volume/vtkVolumeMapper.h | 22 +++++++++++++++++++ .../vtkMultiBlockVolumeMapper.cxx | 15 +++++++++++++ .../VolumeOpenGL2/vtkMultiBlockVolumeMapper.h | 8 +++++++ .../VolumeOpenGL2/vtkSmartVolumeMapper.h | 20 ----------------- 5 files changed, 45 insertions(+), 37 deletions(-) diff --git a/Rendering/Volume/vtkGPUVolumeRayCastMapper.h b/Rendering/Volume/vtkGPUVolumeRayCastMapper.h index c223d47d1141..a1a6ad664fc2 100644 --- a/Rendering/Volume/vtkGPUVolumeRayCastMapper.h +++ b/Rendering/Volume/vtkGPUVolumeRayCastMapper.h @@ -315,21 +315,6 @@ public: vtkBooleanMacro(ClampDepthToBackface, vtkTypeBool); ///@} - ///@{ - /** - * If enabled, the volume(s) whose shading is enabled will use the gradient - * of opacity instead of the scalar gradient to estimate the surface's normal - * when applying the shading model. The opacity considered for the gradient - * is then the scalars converted to opacity by the transfer function(s). - * For now it is only supported in vtkGPUVolumeRayCastMapper. - * Note that enabling it might affect performances, espacially when - * using a 2D TF or a gradient opacity. It is disabled by default. - */ - vtkSetMacro(ComputeNormalFromOpacity, bool); - vtkGetMacro(ComputeNormalFromOpacity, bool); - vtkBooleanMacro(ComputeNormalFromOpacity, bool); - ///@} - /** * Low level API to export the depth texture as vtkImageData in * RenderToImage mode. @@ -612,8 +597,6 @@ protected: */ DataMap LastInputs; - bool ComputeNormalFromOpacity = false; - /** * Define the array used for the Y axis of transfer 2D. * This is used when the transfer function mode is set to 2D. If unset, the diff --git a/Rendering/Volume/vtkVolumeMapper.h b/Rendering/Volume/vtkVolumeMapper.h index 0f89ebd5bb78..4beb53002f08 100644 --- a/Rendering/Volume/vtkVolumeMapper.h +++ b/Rendering/Volume/vtkVolumeMapper.h @@ -162,6 +162,23 @@ public: vtkGetVectorMacro(VoxelCroppingRegionPlanes, double, 6); ///@} + ///@{ + /** + * If enabled, the volume(s) whose shading is enabled will use the gradient + * of opacity instead of the scalar gradient to estimate the surface's normal + * when applying the shading model. The opacity considered for the gradient + * is then the scalars converted to opacity by the transfer function(s). + * For now it is only supported in vtkGPUVolumeRayCastMapper. + * In vtkSmartVolumeMapper and in vtkMultiBlockVolumeMapper, this parameter + * is used when the GPU mapper is effectively used. + * Note that enabling it might affect performances, espacially when + * using a 2D TF or a gradient opacity. It is disabled by default. + */ + vtkSetMacro(ComputeNormalFromOpacity, bool); + vtkGetMacro(ComputeNormalFromOpacity, bool); + vtkBooleanMacro(ComputeNormalFromOpacity, bool); + ///@} + ///@{ /** * Set the flags for the cropping regions. The clipping planes divide the @@ -270,6 +287,11 @@ protected: int BlendMode; + /** + * Is the normal for volume shading computed from opacity or from scalars + */ + bool ComputeNormalFromOpacity = false; + /** * Threshold range for average intensity projection */ diff --git a/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.cxx b/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.cxx index eedd04655f02..2851a96783f4 100644 --- a/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.cxx +++ b/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.cxx @@ -342,6 +342,7 @@ vtkSmartVolumeMapper* vtkMultiBlockVolumeMapper::CreateMapper() if (glMapper != nullptr) { glMapper->UseJitteringOn(); + glMapper->SetComputeNormalFromOpacity(this->ComputeNormalFromOpacity); } return mapper; } @@ -543,6 +544,20 @@ void vtkMultiBlockVolumeMapper::SetRequestedRenderMode(int mode) } } +//------------------------------------------------------------------------------ +void vtkMultiBlockVolumeMapper::SetComputeNormalFromOpacity(bool val) +{ + if (this->ComputeNormalFromOpacity != val) + { + for (auto& mapper : this->Mappers) + { + mapper->SetComputeNormalFromOpacity(val); + } + this->ComputeNormalFromOpacity = val; + this->Modified(); + } +} + //------------------------------------------------------------------------------ void vtkMultiBlockVolumeMapper::SetTransfer2DYAxisArray(const char* a) { diff --git a/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.h b/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.h index 233cfca6cd2b..cc6e614b47e5 100644 --- a/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.h +++ b/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.h @@ -102,6 +102,14 @@ public: void SetBlendMode(int mode) override; ///@} + ///@{ + /** + * ComputeNormalFromOpacity exposed + * \sa vtkVolumeMapper::SetComputeNormalFromOpacity + */ + void SetComputeNormalFromOpacity(bool val) override; + ///@} + ///@{ /** * Cropping API from vtkVolumeMapper diff --git a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h index 06c00c0113ea..e69b6a83942c 100644 --- a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h +++ b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h @@ -293,21 +293,6 @@ public: vtkGetMacro(SampleDistance, float); ///@} - ///@{ - /** - * If enabled, the volume(s) whose shading is enabled will use the gradient - * of opacity instead of the scalar gradient to estimate the surface's normal - * when applying the shading model. The opacity considered for the gradient - * is then the scalars converted to opacity by the transfer function(s). - * For now it is only supported in vtkGPUVolumeRayCastMapper. - * Note that enabling it might affect performances, espacially when - * using a 2D TF or a gradient opacity. It is disabled by default. - */ - vtkSetMacro(ComputeNormalFromOpacity, bool); - vtkGetMacro(ComputeNormalFromOpacity, bool); - vtkBooleanMacro(ComputeNormalFromOpacity, bool); - ///@} - /** * WARNING: INTERNAL METHOD - NOT INTENDED FOR GENERAL USE * Initialize rendering for this volume. @@ -471,11 +456,6 @@ protected: */ float SampleDistance; - /** - * Is the normal for volume shading computed from opacity or from scalars - */ - bool ComputeNormalFromOpacity = false; - /** * Set whether or not the sample distance should be automatically calculated * within the internal volume mapper -- GitLab From 62f9132123fad7ae6258e8d0bcb7000095ca91fc Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Thu, 19 May 2022 15:10:58 +0200 Subject: [PATCH 0247/1015] Factorize matrix computation in vtkOpenGLGPUVolumeRayCastMapper --- .../VolumeOpenGL2/vtkVolumeShaderComposer.h | 16 ++++++++++++++-- 1 file changed, 14 insertions(+), 2 deletions(-) diff --git a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h index fb8245a71635..29cf62c1146d 100644 --- a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h +++ b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h @@ -225,6 +225,19 @@ std::string BaseDeclarationFragment(vtkRenderer* vtkNotUsed(ren), vtkVolumeMappe "uniform vec3 in_cellStep[" << numInputs << "];\n"; + if (mapper->GetVolumetricShadow()) + { + + toShaderStr << "mat4 g_eyeToTexture = in_inverseTextureDatasetMatrix[0] *" + " in_inverseVolumeMatrix[0] * in_inverseModelViewMatrix;\n"; + } + + if (inputs[0].Volume->GetProperty()->GetShade() && !defaultLighting && totalNumberOfLights > 0) + { + toShaderStr << "mat4 g_texToView = in_modelViewMatrix * in_volumeMatrix[0] *" + "in_textureDatasetMatrix[0];\n"; + } + toShaderStr << "uniform vec2 in_scalarsRange[" << numInputs * 4 << "];\n" "uniform vec3 in_cellSpacing[" @@ -1222,8 +1235,7 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa else if (totalNumberOfLights > 0) { shaderStr += std::string("\ - \n g_fragWorldPos = in_modelViewMatrix * in_volumeMatrix[0] *\ - \n in_textureDatasetMatrix[0] * vec4(g_dataPos, 1.0);\ + \n g_fragWorldPos = g_texToView * vec4(g_dataPos, 1.0);\ \n if (g_fragWorldPos.w != 0.0)\ \n {\ \n g_fragWorldPos /= g_fragWorldPos.w;\ -- GitLab From 5aa5bfa394c7124ab3ac803cf6bf6ad663051c45 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sat, 21 May 2022 00:01:28 -0400 Subject: [PATCH 0248/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 0fd767e1f529..424275bb8050 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220520) +set(VTK_BUILD_VERSION 20220521) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 8997cef82b7c44895a2ffe7dc8af547d5cd7f36a Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sun, 22 May 2022 00:01:21 -0400 Subject: [PATCH 0249/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 424275bb8050..0740ef5da7c4 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220521) +set(VTK_BUILD_VERSION 20220522) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 05e22f4e568c01b5dd80faf19222dc233e2e3a20 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Mon, 23 May 2022 00:01:44 -0400 Subject: [PATCH 0250/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 0740ef5da7c4..4fb54e0c6c46 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220522) +set(VTK_BUILD_VERSION 20220523) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 488bc7514957de969fdbbfa81d1af3aac60f5bdf Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Tue, 24 May 2022 00:01:35 -0400 Subject: [PATCH 0251/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 4fb54e0c6c46..9ceb103ff8d7 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220523) +set(VTK_BUILD_VERSION 20220524) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From af1e3a1d99b0f9779716f79ecd2b78032905658a Mon Sep 17 00:00:00 2001 From: Julien Fausty Date: Mon, 16 May 2022 17:37:17 +0200 Subject: [PATCH 0252/1015] new vtkTestHTGGenerator for making HyperTreeGrids in tests --- .../release/dev/add-vtkTestHTGGenerator.md | 5 + Testing/DataModel/CMakeLists.txt | 3 +- Testing/DataModel/vtkTestHTGGenerator.cxx | 218 ++++++++++++++++++ Testing/DataModel/vtkTestHTGGenerator.h | 100 ++++++++ 4 files changed, 325 insertions(+), 1 deletion(-) create mode 100644 Documentation/release/dev/add-vtkTestHTGGenerator.md create mode 100644 Testing/DataModel/vtkTestHTGGenerator.cxx create mode 100644 Testing/DataModel/vtkTestHTGGenerator.h diff --git a/Documentation/release/dev/add-vtkTestHTGGenerator.md b/Documentation/release/dev/add-vtkTestHTGGenerator.md new file mode 100644 index 000000000000..7ad2f682089b --- /dev/null +++ b/Documentation/release/dev/add-vtkTestHTGGenerator.md @@ -0,0 +1,5 @@ +## Pain Point +When writing tests for features that act on HyperTreeGrids (HTGs) it can be annoying and error prone to have to generate the data every time. This leads to either testing that takes a long time to write or that only is tested on one kind of HTG. + +## Feature +Introduce a helper class `vtkTestHTGGenerator` that just serves to generate some specific types of HTGs for testing. diff --git a/Testing/DataModel/CMakeLists.txt b/Testing/DataModel/CMakeLists.txt index 33009953c798..e2939370351d 100644 --- a/Testing/DataModel/CMakeLists.txt +++ b/Testing/DataModel/CMakeLists.txt @@ -1,5 +1,6 @@ set(classes - vtkMappedUnstructuredGridGenerator) + vtkMappedUnstructuredGridGenerator + vtkTestHTGGenerator) vtk_module_add_module(VTK::TestingDataModel CLASSES ${classes}) diff --git a/Testing/DataModel/vtkTestHTGGenerator.cxx b/Testing/DataModel/vtkTestHTGGenerator.cxx new file mode 100644 index 000000000000..058321d7376b --- /dev/null +++ b/Testing/DataModel/vtkTestHTGGenerator.cxx @@ -0,0 +1,218 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkTestHTGGenerator.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyrgight notice for more information. + +=========================================================================*/ + +#include "vtkTestHTGGenerator.h" + +#include "vtkNew.h" +#include "vtkObjectFactory.h" + +#include "vtkCellData.h" +#include "vtkDoubleArray.h" +#include "vtkHyperTree.h" +#include "vtkHyperTreeGrid.h" +#include "vtkHyperTreeGridNonOrientedCursor.h" + +vtkStandardNewMacro(vtkTestHTGGenerator); + +void vtkTestHTGGenerator::PrintSelf(std::ostream& os, vtkIndent indent) +{ + this->Superclass::PrintSelf(os, indent); + if (this->HTG) + { + os << "vtkTestHTGGenerator having generated the following HTG:\n"; + this->HTG->PrintSelf(os, indent); + } + else + { + os << "vtkTestHTGGenerator not having any internal HTG\n"; + } +} + +template +void vtkTestHTGGenerator::generateUnbalanced( + const std::array& extent, const std::array& subdivisions) +{ + this->preprocess(extent, subdivisions); + + vtkNew levels; + levels->SetName("Depth"); + this->HTG->GetCellData()->AddArray(levels); + + vtkHyperTreeGridNonOrientedCursor* cursor = this->HTG->NewNonOrientedCursor(0, true); + cursor->GetTree()->SetGlobalIndexStart(0); + levels->InsertValue(0, 0); + for (vtkIdType l = 0; l < depth; l++) + { + cursor->SubdivideLeaf(); + int numChildren = cursor->GetNumberOfChildren(); + for (int iChild = 0; iChild < numChildren; iChild++) + { + cursor->ToChild(iChild); + vtkIdType vertexId = cursor->GetVertexId(); + vtkIdType globId = cursor->GetTree()->GetGlobalIndexFromLocal(vertexId); + levels->InsertValue(globId, l + 1); + cursor->ToParent(); + } + cursor->ToChild(0); + } + vtkIdType treeOffset = cursor->GetTree()->GetNumberOfVertices(); + cursor->Delete(); + unsigned int nTrees = 1; + for (auto sub : subdivisions) + { + nTrees *= (sub - 1); + } + for (int iT = 1; iT < nTrees; iT++) + { + cursor = this->HTG->NewNonOrientedCursor(iT, true); + cursor->GetTree()->SetGlobalIndexStart(treeOffset); + vtkIdType vertexId = cursor->GetVertexId(); + vtkIdType globId = cursor->GetTree()->GetGlobalIndexFromLocal(vertexId); + levels->InsertValue(globId, 0); + treeOffset += cursor->GetTree()->GetNumberOfVertices(); + cursor->Delete(); + } +} + +template +void vtkTestHTGGenerator::generateBalanced( + const std::array& extent, const std::array& subdivisions) +{ + this->preprocess(extent, subdivisions); + + vtkNew levels; + levels->SetName("Depth"); + this->HTG->GetCellData()->AddArray(levels); + + vtkIdType treeOffset = 0; + unsigned int nTrees = 1; + for (auto sub : subdivisions) + { + nTrees *= sub; + } + for (int iT = 0; iT < nTrees; iT++) + { + vtkHyperTreeGridNonOrientedCursor* cursor = this->HTG->NewNonOrientedCursor(iT, true); + cursor->GetTree()->SetGlobalIndexStart(treeOffset); + this->recurseBalanced(cursor, levels, depth); + treeOffset += cursor->GetTree()->GetNumberOfVertices(); + cursor->Delete(); + } +} + +void vtkTestHTGGenerator::recurseBalanced( + vtkHyperTreeGridNonOrientedCursor* cursor, vtkDoubleArray* levels, const int maxDepth) +{ + vtkIdType vertexId = cursor->GetVertexId(); + vtkHyperTree* tree = cursor->GetTree(); + vtkIdType globId = tree->GetGlobalIndexFromLocal(vertexId); + vtkIdType thisLevel = cursor->GetLevel(); + + levels->InsertValue(globId, thisLevel); + + if (cursor->IsLeaf()) + { + if (thisLevel < maxDepth) + { + cursor->SubdivideLeaf(); + this->recurseBalanced(cursor, levels, maxDepth); + } + } + else + { + int numChildren = cursor->GetNumberOfChildren(); + for (int iChild = 0; iChild < numChildren; iChild++) + { + cursor->ToChild(iChild); + this->recurseBalanced(cursor, levels, maxDepth); + cursor->ToParent(); + } + } +} + +template +void vtkTestHTGGenerator::preprocess( + const std::array& extent, const std::array& subdivisions) +{ + this->clear(); + this->HTG = vtkHyperTreeGrid::New(); + std::array subdivisions3d = { 1, 1, 1 }; + std::copy(subdivisions.begin(), subdivisions.end(), subdivisions3d.begin()); + this->HTG->SetDimensions(subdivisions3d.begin()); + this->HTG->SetBranchFactor(factor); + for (int d = 0; d < dim; d++) + { + vtkNew vtkCoords; + double step = (extent[d * 2 + 1] - extent[d * 2]) / (subdivisions[d] - 1.0); + for (int i = 0; i < subdivisions[d]; i++) + { + vtkCoords->InsertValue(i, extent[d * 2] + step * i); + } + switch (d) + { + case (0): + this->HTG->SetXCoordinates(vtkCoords); + break; + case (1): + this->HTG->SetYCoordinates(vtkCoords); + break; + case (2): + this->HTG->SetZCoordinates(vtkCoords); + break; + } + } +} + +void vtkTestHTGGenerator::generateUnbalanced3DepthQuadTree2x3() +{ + std::array extent = { -1.0, 1.0, -1.0, 1.0 }; + std::array subdivisions = { 2, 3 }; + generateUnbalanced<2, 2, 3>(extent, subdivisions); +} + +void vtkTestHTGGenerator::generateBalanced3DepthQuadTree2x3() +{ + std::array extent = { -1.0, 1.0, -1.0, 1.0 }; + std::array subdivisions = { 2, 3 }; + generateBalanced<2, 2, 3>(extent, subdivisions); +} + +void vtkTestHTGGenerator::generateUnbalanced2Depth3BranchTree3x3() +{ + std::array extent = { -1.0, 1.0, -1.0, 1.0 }; + std::array subdivisions = { 3, 3 }; + generateUnbalanced<2, 3, 2>(extent, subdivisions); +} + +void vtkTestHTGGenerator::generateBalanced4Depth3BranchTree2x2() +{ + std::array extent = { -1.0, 1.0, -1.0, 1.0 }; + std::array subdivisions = { 2, 2 }; + generateBalanced<2, 3, 4>(extent, subdivisions); +} + +void vtkTestHTGGenerator::generateUnbalanced3DepthOctTree3x2x3() +{ + std::array extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; + std::array subdivisions = { 3, 2, 3 }; + generateUnbalanced<3, 2, 3>(extent, subdivisions); +} + +void vtkTestHTGGenerator::generateBalanced2Depth3BranchTree3x3x2() +{ + std::array extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; + std::array subdivisions = { 3, 3, 2 }; + generateBalanced<3, 3, 2>(extent, subdivisions); +} diff --git a/Testing/DataModel/vtkTestHTGGenerator.h b/Testing/DataModel/vtkTestHTGGenerator.h new file mode 100644 index 000000000000..99c31dafd2c8 --- /dev/null +++ b/Testing/DataModel/vtkTestHTGGenerator.h @@ -0,0 +1,100 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkTestHTGGenerator.h + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyrgight notice for more information. + +=========================================================================*/ + +/** + * @class vtkTestHTGGenerator + * @brief Helper class for generating a curated set of HyperTree Grids (HTGs) for testing purposes + * + * Provides a set of public methods for generating some commonly used HTG setups. + */ + +#include "vtkObject.h" +#include "vtkTestingDataModelModule.h" //for export macro + +#ifndef vtkTestHTGGenerator_h +#define vtkTestHTGGenerator_h + +class vtkHyperTreeGrid; +class vtkHyperTreeGridNonOrientedCursor; +class vtkDoubleArray; + +class VTKTESTINGDATAMODEL_EXPORT vtkTestHTGGenerator : public vtkObject +{ +public: + /** + * Standard object factory setup + */ + vtkTypeMacro(vtkTestHTGGenerator, vtkObject); + void PrintSelf(std::ostream& os, vtkIndent indent) override; + static vtkTestHTGGenerator* New(); + + /** + * Getter method for the HTG variable + */ + vtkHyperTreeGrid* GetHTG() const { return this->HTG; }; + + /** + * Helper methods for generating HTGs + */ + template + void generateUnbalanced( + const std::array& extent, const std::array& subdivisions); + + template + void generateBalanced( + const std::array& extent, const std::array& subdivisions); + + /** + * Specializations + */ + void generateUnbalanced3DepthQuadTree2x3(); + + void generateBalanced3DepthQuadTree2x3(); + + void generateUnbalanced2Depth3BranchTree3x3(); + + void generateBalanced4Depth3BranchTree2x2(); + + void generateUnbalanced3DepthOctTree3x2x3(); + + void generateBalanced2Depth3BranchTree3x3x2(); + + void clear() { this->HTG = nullptr; }; + +protected: + /** + * Contructor setup + */ + vtkTestHTGGenerator() { this->HTG = nullptr; }; + ~vtkTestHTGGenerator() { this->clear(); }; + vtkTestHTGGenerator(const vtkTestHTGGenerator&) = delete; + + void operator=(const vtkTestHTGGenerator&) = delete; + + template + void preprocess( + const std::array& extent, const std::array& subdivisions); + + void recurseBalanced( + vtkHyperTreeGridNonOrientedCursor* cursor, vtkDoubleArray* levels, const int maxDepth); + + /** + * Internal HTG + */ + vtkHyperTreeGrid* HTG; + +}; // vtkTestHTGGenerator + +#endif // vtkTestHTGGenerator_h -- GitLab From 9f58d964441c0444b1392bc6e260638a723f1f05 Mon Sep 17 00:00:00 2001 From: Julien Fausty Date: Tue, 17 May 2022 17:21:36 +0200 Subject: [PATCH 0253/1015] review + moving vtkTestHTGGenerator -> vtkHyperTreeGridPreConfiguredSource --- Filters/Sources/CMakeLists.txt | 1 + .../vtkHyperTreeGridPreConfiguredSource.cxx | 401 ++++++++++++++++++ .../vtkHyperTreeGridPreConfiguredSource.h | 194 +++++++++ Testing/DataModel/CMakeLists.txt | 3 +- Testing/DataModel/vtk.module | 1 + Testing/DataModel/vtkTestHTGGenerator.cxx | 218 ---------- Testing/DataModel/vtkTestHTGGenerator.h | 100 ----- 7 files changed, 598 insertions(+), 320 deletions(-) create mode 100644 Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx create mode 100644 Filters/Sources/vtkHyperTreeGridPreConfiguredSource.h delete mode 100644 Testing/DataModel/vtkTestHTGGenerator.cxx delete mode 100644 Testing/DataModel/vtkTestHTGGenerator.h diff --git a/Filters/Sources/CMakeLists.txt b/Filters/Sources/CMakeLists.txt index 8708a2627c9b..a35b59705989 100644 --- a/Filters/Sources/CMakeLists.txt +++ b/Filters/Sources/CMakeLists.txt @@ -15,6 +15,7 @@ set(classes vtkGlyphSource2D vtkGraphToPolyData vtkHandleSource + vtkHyperTreeGridPreConfiguredSource vtkHyperTreeGridSource vtkLineSource vtkOutlineCornerFilter diff --git a/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx new file mode 100644 index 000000000000..c109f4206e31 --- /dev/null +++ b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx @@ -0,0 +1,401 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkHyperTreeGridPreConfiguredSource.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyrgight notice for more information. + +=========================================================================*/ + +#include "vtkHyperTreeGridPreConfiguredSource.h" + +#include "vtkInformation.h" +#include "vtkInformationVector.h" +#include "vtkNew.h" +#include "vtkObjectFactory.h" +#include "vtkStreamingDemandDrivenPipeline.h" + +#include "vtkCellData.h" +#include "vtkDoubleArray.h" +#include "vtkHyperTree.h" +#include "vtkHyperTreeGrid.h" +#include "vtkHyperTreeGridNonOrientedCursor.h" + +vtkStandardNewMacro(vtkHyperTreeGridPreConfiguredSource); + +vtkHyperTreeGridPreConfiguredSource::vtkHyperTreeGridPreConfiguredSource() + : CustomDim(2) + , CustomFactor(2) + , CustomDepth(2) + , CustomSubdivisions(2, 2) +{ + this->SetNumberOfInputPorts(0); + this->SetNumberOfOutputPorts(1); + + this->AppropriateOutput = true; + + this->CustomExtent.resize(4); + this->CustomExtent[0] = this->CustomExtent[2] = 0.0; + this->CustomExtent[1] = this->CustomExtent[3] = 1.0; +} + +int vtkHyperTreeGridPreConfiguredSource::FillOutputPortInformation(int, vtkInformation* info) +{ + info->Set(vtkDataObject::DATA_TYPE_NAME(), "vtkHyperTreeGrid"); + return 1; +} + +int vtkHyperTreeGridPreConfiguredSource::RequestInformation( + vtkInformation* req, vtkInformationVector** inputVector, vtkInformationVector* outputVector) +{ + if (!this->Superclass::RequestInformation(req, inputVector, outputVector)) + { + return 0; + } + int wholeExtent[6] = { 0, 1, 0, 1, 0, 1 }; + int dimension = 2; + int depth = 3; + switch (this->HTGMode) + { + case UNBALANCED_3DEPTH_2BRANCH_2X3: + wholeExtent[3] = 2; + break; + case BALANCED_3DEPTH_2BRANCH_2X3: + wholeExtent[3] = 2; + break; + case UNBALANCED_2DEPTH_3BRANCH_3X3: + wholeExtent[1] = wholeExtent[3] = 2; + depth = 2; + break; + case BALANCED_4DEPTH_3BRANCH_2X2: + depth = 4; + break; + case UNBALANCED_3DEPTH_2BRANCH_3X2X3: + wholeExtent[1] = wholeExtent[5] = 2; + dimension = 3; + break; + case BALANCED_2DEPTH_3BRANCH_3X3X2: + wholeExtent[1] = wholeExtent[3] = 2; + dimension = 3; + depth = 2; + break; + case CUSTOM: + std::copy(this->CustomExtent.begin(), this->CustomExtent.end(), wholeExtent); + dimension = this->CustomDim; + depth = this->CustomDepth; + default: + vtkErrorMacro("No suitable HTG mode found."); + return 0; + } + + vtkInformation* info = outputVector->GetInformationObject(0); + info->Set(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT(), wholeExtent, 6); + info->Set(vtkHyperTreeGrid::LEVELS(), depth); + info->Set(vtkHyperTreeGrid::DIMENSION(), dimension); + info->Set(vtkAlgorithm::CAN_PRODUCE_SUB_EXTENT(), 0); + return 1; +} + +int vtkHyperTreeGridPreConfiguredSource::RequestData(vtkInformation* vtkNotUsed(req), + vtkInformationVector** vtkNotUsed(inputVector), vtkInformationVector* outputVector) +{ + vtkInformation* outInfo = outputVector->GetInformationObject(0); + if (!outInfo) + { + vtkErrorMacro("Output information not found"); + return 0; + } + vtkHyperTreeGrid* HTG = vtkHyperTreeGrid::GetData(outInfo); + if (!HTG) + { + vtkErrorMacro("Could not get HyperTreeGrid output"); + return 0; + } + + return this->ProcessTrees(nullptr, HTG); +} + +int vtkHyperTreeGridPreConfiguredSource::ProcessTrees( + vtkHyperTreeGrid* vtkNotUsed(inputObj), vtkDataObject* HTGObj) +{ + vtkHyperTreeGrid* HTG = vtkHyperTreeGrid::SafeDownCast(HTGObj); + switch (this->HTGMode) + { + case UNBALANCED_3DEPTH_2BRANCH_2X3: + this->GenerateUnbalanced3DepthQuadTree2x3(HTG); + break; + case BALANCED_3DEPTH_2BRANCH_2X3: + this->GenerateBalanced3DepthQuadTree2x3(HTG); + break; + case UNBALANCED_2DEPTH_3BRANCH_3X3: + this->GenerateUnbalanced2Depth3BranchTree3x3(HTG); + break; + case BALANCED_4DEPTH_3BRANCH_2X2: + this->GenerateBalanced4Depth3BranchTree2x2(HTG); + break; + case UNBALANCED_3DEPTH_2BRANCH_3X2X3: + this->GenerateUnbalanced3DepthOctTree3x2x3(HTG); + break; + case BALANCED_2DEPTH_3BRANCH_3X3X2: + this->GenerateBalanced2Depth3BranchTree3x3x2(HTG); + break; + case CUSTOM: + if (!this->GenerateCustom(HTG)) + { + vtkErrorMacro("Could not generate custom HyperTreeGrid"); + return 0; + } + break; + default: + vtkErrorMacro("Unsupported HTG mode"); + return 0; + } + return 1; +} + +void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced(vtkHyperTreeGrid* HTG, int dim, + int factor, int depth, const std::vector& extent, const std::vector& subdivisions) +{ + this->Preprocess(HTG, dim, factor, extent, subdivisions); + + vtkNew levels; + levels->SetName("Depth"); + levels->SetNumberOfComponents(1); + levels->SetNumberOfTuples(0); + HTG->GetCellData()->AddArray(levels); + + auto cursor = vtk::TakeSmartPointer(HTG->NewNonOrientedCursor(0, true)); + cursor->GetTree()->SetGlobalIndexStart(0); + levels->InsertValue(0, 0); + for (vtkIdType l = 0; l < depth; l++) + { + cursor->SubdivideLeaf(); + int numChildren = cursor->GetNumberOfChildren(); + for (int iChild = 0; iChild < numChildren; iChild++) + { + cursor->ToChild(iChild); + vtkIdType vertexId = cursor->GetVertexId(); + vtkIdType globId = cursor->GetTree()->GetGlobalIndexFromLocal(vertexId); + levels->InsertValue(globId, l + 1); + cursor->ToParent(); + } + cursor->ToChild(0); + } + vtkIdType treeOffset = cursor->GetTree()->GetNumberOfVertices(); + + int nTrees = 1; + for (auto sub : subdivisions) + { + nTrees *= (sub - 1); + } + for (int iT = 1; iT < nTrees; iT++) + { + cursor = vtk::TakeSmartPointer(HTG->NewNonOrientedCursor(iT, true)); + vtkHyperTree* tree = cursor->GetTree(); + tree->SetGlobalIndexStart(treeOffset); + vtkIdType globId = tree->GetGlobalIndexFromLocal(0); + levels->InsertValue(globId, 0); + treeOffset += tree->GetNumberOfVertices(); + } +} + +void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced(vtkHyperTreeGrid* HTG, int dim, + int factor, int depth, const std::vector& extent, const std::vector& subdivisions) +{ + this->Preprocess(HTG, dim, factor, extent, subdivisions); + + vtkNew levels; + levels->SetName("Depth"); + levels->SetNumberOfComponents(1); + levels->SetNumberOfTuples(0); + HTG->GetCellData()->AddArray(levels); + + vtkIdType treeOffset = 0; + int nTrees = 1; + for (auto sub : subdivisions) + { + nTrees *= (sub - 1); + } + for (int iT = 0; iT < nTrees; iT++) + { + auto cursor = vtk::TakeSmartPointer(HTG->NewNonOrientedCursor(iT, true)); + cursor->GetTree()->SetGlobalIndexStart(treeOffset); + this->RecurseBalanced(cursor, levels, depth); + treeOffset += cursor->GetTree()->GetNumberOfVertices(); + } +} + +void vtkHyperTreeGridPreConfiguredSource::RecurseBalanced( + vtkHyperTreeGridNonOrientedCursor* cursor, vtkDoubleArray* levels, const int maxDepth) +{ + vtkIdType vertexId = cursor->GetVertexId(); + vtkHyperTree* tree = cursor->GetTree(); + vtkIdType globId = tree->GetGlobalIndexFromLocal(vertexId); + vtkIdType thisLevel = cursor->GetLevel(); + + levels->InsertValue(globId, thisLevel); + + if (cursor->IsLeaf()) + { + if (thisLevel < maxDepth) + { + cursor->SubdivideLeaf(); + this->RecurseBalanced(cursor, levels, maxDepth); + } + } + else + { + int numChildren = cursor->GetNumberOfChildren(); + for (int iChild = 0; iChild < numChildren; iChild++) + { + cursor->ToChild(iChild); + this->RecurseBalanced(cursor, levels, maxDepth); + cursor->ToParent(); + } + } +} + +void vtkHyperTreeGridPreConfiguredSource::Preprocess(vtkHyperTreeGrid* HTG, int dim, int factor, + const std::vector& extent, const std::vector& subdivisions) +{ + if (extent.size() < static_cast(2 * dim)) + { + vtkErrorMacro("Supplied extent is not long enough"); + return; + } + if (subdivisions.size() < static_cast(dim)) + { + vtkErrorMacro("Supplied subdivisions is not long enough"); + return; + } + HTG->Initialize(); + std::array subdivisions3d = { 1, 1, 1 }; + std::copy(subdivisions.begin(), subdivisions.end(), subdivisions3d.begin()); + HTG->SetDimensions(subdivisions3d.data()); + HTG->SetBranchFactor(factor); + for (int d = 0; d < dim; d++) + { + vtkNew vtkCoords; + vtkCoords->SetNumberOfComponents(1); + vtkCoords->SetNumberOfTuples(subdivisions[d]); + double step = (extent[d * 2 + 1] - extent[d * 2]) / (subdivisions[d] - 1.0); + for (int i = 0; i < subdivisions[d]; i++) + { + vtkCoords->InsertValue(i, extent[d * 2] + step * i); + } + switch (d) + { + case (0): + HTG->SetXCoordinates(vtkCoords); + break; + case (1): + HTG->SetYCoordinates(vtkCoords); + break; + case (2): + HTG->SetZCoordinates(vtkCoords); + break; + } + } +} + +void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced3DepthQuadTree2x3(vtkHyperTreeGrid* HTG) +{ + std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; + std::vector subdivisions = { 2, 3 }; + this->GenerateUnbalanced(HTG, 2, 2, 3, extent, subdivisions); +} + +void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced3DepthQuadTree2x3(vtkHyperTreeGrid* HTG) +{ + std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; + std::vector subdivisions = { 2, 3 }; + this->GenerateBalanced(HTG, 2, 2, 3, extent, subdivisions); +} + +void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced2Depth3BranchTree3x3( + vtkHyperTreeGrid* HTG) +{ + std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; + std::vector subdivisions = { 3, 3 }; + this->GenerateUnbalanced(HTG, 2, 3, 2, extent, subdivisions); +} + +void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced4Depth3BranchTree2x2( + vtkHyperTreeGrid* HTG) +{ + std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; + std::vector subdivisions = { 2, 2 }; + this->GenerateBalanced(HTG, 2, 3, 4, extent, subdivisions); +} + +void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced3DepthOctTree3x2x3( + vtkHyperTreeGrid* HTG) +{ + std::vector extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; + std::vector subdivisions = { 3, 2, 3 }; + this->GenerateUnbalanced(HTG, 3, 2, 3, extent, subdivisions); +} + +void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced2Depth3BranchTree3x3x2( + vtkHyperTreeGrid* HTG) +{ + std::vector extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; + std::vector subdivisions = { 3, 3, 2 }; + this->GenerateBalanced(HTG, 3, 3, 2, extent, subdivisions); +} + +int vtkHyperTreeGridPreConfiguredSource::GenerateCustom(vtkHyperTreeGrid* HTG) +{ + if (this->CustomExtent.size() < static_cast(this->CustomDim * 2)) + { + vtkErrorMacro("Custom extent array is not long enough"); + return 0; + } + + if (this->CustomSubdivisions.size() < static_cast(this->CustomDim)) + { + vtkErrorMacro("Custom subdivisions array is not long enough"); + return 0; + } + + switch (this->CustomArchitecture) + { + case BALANCED: + { + this->GenerateBalanced(HTG, this->CustomDim, this->CustomFactor, this->CustomDepth, + this->CustomExtent, this->CustomSubdivisions); + break; + } + case UNBALANCED: + { + this->GenerateUnbalanced(HTG, this->CustomDim, this->CustomFactor, this->CustomDepth, + this->CustomExtent, this->CustomSubdivisions); + break; + } + default: + return 0; + } + return 1; +} + +void vtkHyperTreeGridPreConfiguredSource::SetCustomExtent(int extentSize, double* extent) +{ + vtkDebugMacro(<< "setting CustomExtent dynamically"); + this->CustomExtent.resize(extentSize); + std::copy(extent, extent + extentSize, this->CustomExtent.begin()); + this->Modified(); +} + +void vtkHyperTreeGridPreConfiguredSource::SetCustomSubdivisions(int subSize, int* subdivisions) +{ + vtkDebugMacro(<< "setting CustomSubdivisons dynamically"); + this->CustomSubdivisions.resize(subSize); + std::copy(subdivisions, subdivisions + subSize, this->CustomSubdivisions.begin()); + this->Modified(); +} diff --git a/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.h b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.h new file mode 100644 index 000000000000..ebc18a324d2a --- /dev/null +++ b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.h @@ -0,0 +1,194 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkHyperTreeGridPreConfiguredSource.h + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyrgight notice for more information. + +=========================================================================*/ + +/** + * @class vtkHyperTreeGridPreConfiguredSource + * @brief Helper class for generating a curated set of HyperTree Grids (HTGs) for testing purposes + * + * Provides a set of public methods for generating some commonly used HTG setups. + */ + +#include "vtkFiltersSourcesModule.h" //for export macro +#include "vtkHyperTreeGridAlgorithm.h" + +#ifndef vtkHyperTreeGridPreConfiguredSource_h +#define vtkHyperTreeGridPreConfiguredSource_h + +class vtkHyperTreeGrid; +class vtkHyperTreeGridNonOrientedCursor; +class vtkDoubleArray; + +class VTKFILTERSSOURCES_EXPORT vtkHyperTreeGridPreConfiguredSource + : public vtkHyperTreeGridAlgorithm +{ +public: + /** + * Standard object factory setup + */ + vtkTypeMacro(vtkHyperTreeGridPreConfiguredSource, vtkHyperTreeGridAlgorithm); + static vtkHyperTreeGridPreConfiguredSource* New(); + + ///@{ + /** + * Helper methods for generating HTGs + */ + void GenerateUnbalanced(vtkHyperTreeGrid* HTG, int dim, int factor, int depth, + const std::vector& extent, const std::vector& subdivisions); + + void GenerateBalanced(vtkHyperTreeGrid* HTG, int dim, int factor, int depth, + const std::vector& extent, const std::vector& subdivisions); + ///@} + + ///@{ + /** + * \enum An enum type for referencing preconfigured HTGs + */ + enum HTGType + { + UNBALANCED_3DEPTH_2BRANCH_2X3, + BALANCED_3DEPTH_2BRANCH_2X3, + UNBALANCED_2DEPTH_3BRANCH_3X3, + BALANCED_4DEPTH_3BRANCH_2X2, + UNBALANCED_3DEPTH_2BRANCH_3X2X3, + BALANCED_2DEPTH_3BRANCH_3X3X2, + CUSTOM + }; + ///@} + + ///@{ + /** + * \enum An enum type for configuring the type of generation for the CUSTOM HTG type + */ + enum HTGArchitecture + { + UNBALANCED, + BALANCED + }; + ///@} + + /** + * Get/Set HyperTreeGrid mode + */ + vtkGetEnumMacro(HTGMode, HTGType); + vtkSetEnumMacro(HTGMode, HTGType); + + ///@{ + /** + * Get/Set for custom architecture + */ + vtkGetEnumMacro(CustomArchitecture, HTGArchitecture); + vtkSetEnumMacro(CustomArchitecture, HTGArchitecture); + + /** + * Get/Set for custom dimension + */ + vtkGetMacro(CustomDim, unsigned int); + vtkSetMacro(CustomDim, unsigned int); + + /** + * Get/Set for custom branching factor + */ + vtkGetMacro(CustomFactor, unsigned int); + vtkSetMacro(CustomFactor, unsigned int); + + /** + * Get/Set for custom depth + */ + vtkGetMacro(CustomDepth, unsigned int); + vtkSetMacro(CustomDepth, unsigned int); + + /** + * Get/Set for custom extent in coordinate space + */ + void SetCustomExtent(int extentSize, double* extent); + double* GetCustomExtent() { return CustomExtent.data(); }; + + /** + * Get/Set for custom subdivisions of the extent + */ + void SetCustomSubdivisions(int subSize, int* subdivisions); + int* GetCustomSubdivisions() { return CustomSubdivisions.data(); }; + ///@} + + ///@{ + /** + * Helper functions for generating the different types of HTGs + */ + void GenerateUnbalanced3DepthQuadTree2x3(vtkHyperTreeGrid* HTG); + + void GenerateBalanced3DepthQuadTree2x3(vtkHyperTreeGrid* HTG); + + void GenerateUnbalanced2Depth3BranchTree3x3(vtkHyperTreeGrid* HTG); + + void GenerateBalanced4Depth3BranchTree2x2(vtkHyperTreeGrid* HTG); + + void GenerateUnbalanced3DepthOctTree3x2x3(vtkHyperTreeGrid* HTG); + + void GenerateBalanced2Depth3BranchTree3x3x2(vtkHyperTreeGrid* HTG); + + int GenerateCustom(vtkHyperTreeGrid* HTG); + ///@} + +protected: + /** + * Contructor setup + */ + vtkHyperTreeGridPreConfiguredSource(); + virtual ~vtkHyperTreeGridPreConfiguredSource() = default; + vtkHyperTreeGridPreConfiguredSource(const vtkHyperTreeGridPreConfiguredSource&) = delete; + + void operator=(const vtkHyperTreeGridPreConfiguredSource&) = delete; + + int FillOutputPortInformation(int, vtkInformation*) override; + + int RequestInformation(vtkInformation*, vtkInformationVector**, vtkInformationVector*) override; + int RequestData(vtkInformation*, vtkInformationVector**, vtkInformationVector*) override; + + int ProcessTrees(vtkHyperTreeGrid*, vtkDataObject*) override; + + ///@{ + /** + * Common preprocessing for setting up the HyperTreeGrid for all types + */ + void Preprocess(vtkHyperTreeGrid* HTG, int dim, int factor, const std::vector& extent, + const std::vector& subdivisions); + + /** + * Recursive helper for the BALANCED architecture + */ + void RecurseBalanced( + vtkHyperTreeGridNonOrientedCursor* cursor, vtkDoubleArray* levels, const int maxDepth); + ///@} + + ///@{ + /** + * The pre-configuration mode of the generator + */ + HTGType HTGMode; + + /** + * All members related to the CUSTOM HTGType + */ + HTGArchitecture CustomArchitecture; + unsigned int CustomDim; + unsigned int CustomFactor; + unsigned int CustomDepth; + std::vector CustomExtent; + std::vector CustomSubdivisions; + ///@} + +}; // vtkHyperTreeGridPreConfiguredSource + +#endif // vtkHyperTreeGridPreConfiguredSource_h diff --git a/Testing/DataModel/CMakeLists.txt b/Testing/DataModel/CMakeLists.txt index e2939370351d..33009953c798 100644 --- a/Testing/DataModel/CMakeLists.txt +++ b/Testing/DataModel/CMakeLists.txt @@ -1,6 +1,5 @@ set(classes - vtkMappedUnstructuredGridGenerator - vtkTestHTGGenerator) + vtkMappedUnstructuredGridGenerator) vtk_module_add_module(VTK::TestingDataModel CLASSES ${classes}) diff --git a/Testing/DataModel/vtk.module b/Testing/DataModel/vtk.module index bfc26a96aab4..1d519d294cc1 100644 --- a/Testing/DataModel/vtk.module +++ b/Testing/DataModel/vtk.module @@ -4,4 +4,5 @@ LIBRARY_NAME vtkTestingDataModel DEPENDS VTK::CommonDataModel + VTK::CommonExecutionModel EXCLUDE_WRAP diff --git a/Testing/DataModel/vtkTestHTGGenerator.cxx b/Testing/DataModel/vtkTestHTGGenerator.cxx deleted file mode 100644 index 058321d7376b..000000000000 --- a/Testing/DataModel/vtkTestHTGGenerator.cxx +++ /dev/null @@ -1,218 +0,0 @@ -/*========================================================================= - - Program: Visualization Toolkit - Module: vtkTestHTGGenerator.cxx - - Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen - All rights reserved. - See Copyright.txt or http://www.kitware.com/Copyright.htm for details. - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the above copyrgight notice for more information. - -=========================================================================*/ - -#include "vtkTestHTGGenerator.h" - -#include "vtkNew.h" -#include "vtkObjectFactory.h" - -#include "vtkCellData.h" -#include "vtkDoubleArray.h" -#include "vtkHyperTree.h" -#include "vtkHyperTreeGrid.h" -#include "vtkHyperTreeGridNonOrientedCursor.h" - -vtkStandardNewMacro(vtkTestHTGGenerator); - -void vtkTestHTGGenerator::PrintSelf(std::ostream& os, vtkIndent indent) -{ - this->Superclass::PrintSelf(os, indent); - if (this->HTG) - { - os << "vtkTestHTGGenerator having generated the following HTG:\n"; - this->HTG->PrintSelf(os, indent); - } - else - { - os << "vtkTestHTGGenerator not having any internal HTG\n"; - } -} - -template -void vtkTestHTGGenerator::generateUnbalanced( - const std::array& extent, const std::array& subdivisions) -{ - this->preprocess(extent, subdivisions); - - vtkNew levels; - levels->SetName("Depth"); - this->HTG->GetCellData()->AddArray(levels); - - vtkHyperTreeGridNonOrientedCursor* cursor = this->HTG->NewNonOrientedCursor(0, true); - cursor->GetTree()->SetGlobalIndexStart(0); - levels->InsertValue(0, 0); - for (vtkIdType l = 0; l < depth; l++) - { - cursor->SubdivideLeaf(); - int numChildren = cursor->GetNumberOfChildren(); - for (int iChild = 0; iChild < numChildren; iChild++) - { - cursor->ToChild(iChild); - vtkIdType vertexId = cursor->GetVertexId(); - vtkIdType globId = cursor->GetTree()->GetGlobalIndexFromLocal(vertexId); - levels->InsertValue(globId, l + 1); - cursor->ToParent(); - } - cursor->ToChild(0); - } - vtkIdType treeOffset = cursor->GetTree()->GetNumberOfVertices(); - cursor->Delete(); - unsigned int nTrees = 1; - for (auto sub : subdivisions) - { - nTrees *= (sub - 1); - } - for (int iT = 1; iT < nTrees; iT++) - { - cursor = this->HTG->NewNonOrientedCursor(iT, true); - cursor->GetTree()->SetGlobalIndexStart(treeOffset); - vtkIdType vertexId = cursor->GetVertexId(); - vtkIdType globId = cursor->GetTree()->GetGlobalIndexFromLocal(vertexId); - levels->InsertValue(globId, 0); - treeOffset += cursor->GetTree()->GetNumberOfVertices(); - cursor->Delete(); - } -} - -template -void vtkTestHTGGenerator::generateBalanced( - const std::array& extent, const std::array& subdivisions) -{ - this->preprocess(extent, subdivisions); - - vtkNew levels; - levels->SetName("Depth"); - this->HTG->GetCellData()->AddArray(levels); - - vtkIdType treeOffset = 0; - unsigned int nTrees = 1; - for (auto sub : subdivisions) - { - nTrees *= sub; - } - for (int iT = 0; iT < nTrees; iT++) - { - vtkHyperTreeGridNonOrientedCursor* cursor = this->HTG->NewNonOrientedCursor(iT, true); - cursor->GetTree()->SetGlobalIndexStart(treeOffset); - this->recurseBalanced(cursor, levels, depth); - treeOffset += cursor->GetTree()->GetNumberOfVertices(); - cursor->Delete(); - } -} - -void vtkTestHTGGenerator::recurseBalanced( - vtkHyperTreeGridNonOrientedCursor* cursor, vtkDoubleArray* levels, const int maxDepth) -{ - vtkIdType vertexId = cursor->GetVertexId(); - vtkHyperTree* tree = cursor->GetTree(); - vtkIdType globId = tree->GetGlobalIndexFromLocal(vertexId); - vtkIdType thisLevel = cursor->GetLevel(); - - levels->InsertValue(globId, thisLevel); - - if (cursor->IsLeaf()) - { - if (thisLevel < maxDepth) - { - cursor->SubdivideLeaf(); - this->recurseBalanced(cursor, levels, maxDepth); - } - } - else - { - int numChildren = cursor->GetNumberOfChildren(); - for (int iChild = 0; iChild < numChildren; iChild++) - { - cursor->ToChild(iChild); - this->recurseBalanced(cursor, levels, maxDepth); - cursor->ToParent(); - } - } -} - -template -void vtkTestHTGGenerator::preprocess( - const std::array& extent, const std::array& subdivisions) -{ - this->clear(); - this->HTG = vtkHyperTreeGrid::New(); - std::array subdivisions3d = { 1, 1, 1 }; - std::copy(subdivisions.begin(), subdivisions.end(), subdivisions3d.begin()); - this->HTG->SetDimensions(subdivisions3d.begin()); - this->HTG->SetBranchFactor(factor); - for (int d = 0; d < dim; d++) - { - vtkNew vtkCoords; - double step = (extent[d * 2 + 1] - extent[d * 2]) / (subdivisions[d] - 1.0); - for (int i = 0; i < subdivisions[d]; i++) - { - vtkCoords->InsertValue(i, extent[d * 2] + step * i); - } - switch (d) - { - case (0): - this->HTG->SetXCoordinates(vtkCoords); - break; - case (1): - this->HTG->SetYCoordinates(vtkCoords); - break; - case (2): - this->HTG->SetZCoordinates(vtkCoords); - break; - } - } -} - -void vtkTestHTGGenerator::generateUnbalanced3DepthQuadTree2x3() -{ - std::array extent = { -1.0, 1.0, -1.0, 1.0 }; - std::array subdivisions = { 2, 3 }; - generateUnbalanced<2, 2, 3>(extent, subdivisions); -} - -void vtkTestHTGGenerator::generateBalanced3DepthQuadTree2x3() -{ - std::array extent = { -1.0, 1.0, -1.0, 1.0 }; - std::array subdivisions = { 2, 3 }; - generateBalanced<2, 2, 3>(extent, subdivisions); -} - -void vtkTestHTGGenerator::generateUnbalanced2Depth3BranchTree3x3() -{ - std::array extent = { -1.0, 1.0, -1.0, 1.0 }; - std::array subdivisions = { 3, 3 }; - generateUnbalanced<2, 3, 2>(extent, subdivisions); -} - -void vtkTestHTGGenerator::generateBalanced4Depth3BranchTree2x2() -{ - std::array extent = { -1.0, 1.0, -1.0, 1.0 }; - std::array subdivisions = { 2, 2 }; - generateBalanced<2, 3, 4>(extent, subdivisions); -} - -void vtkTestHTGGenerator::generateUnbalanced3DepthOctTree3x2x3() -{ - std::array extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; - std::array subdivisions = { 3, 2, 3 }; - generateUnbalanced<3, 2, 3>(extent, subdivisions); -} - -void vtkTestHTGGenerator::generateBalanced2Depth3BranchTree3x3x2() -{ - std::array extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; - std::array subdivisions = { 3, 3, 2 }; - generateBalanced<3, 3, 2>(extent, subdivisions); -} diff --git a/Testing/DataModel/vtkTestHTGGenerator.h b/Testing/DataModel/vtkTestHTGGenerator.h deleted file mode 100644 index 99c31dafd2c8..000000000000 --- a/Testing/DataModel/vtkTestHTGGenerator.h +++ /dev/null @@ -1,100 +0,0 @@ -/*========================================================================= - - Program: Visualization Toolkit - Module: vtkTestHTGGenerator.h - - Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen - All rights reserved. - See Copyright.txt or http://www.kitware.com/Copyright.htm for details. - - This software is distributed WITHOUT ANY WARRANTY; without even - the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR - PURPOSE. See the above copyrgight notice for more information. - -=========================================================================*/ - -/** - * @class vtkTestHTGGenerator - * @brief Helper class for generating a curated set of HyperTree Grids (HTGs) for testing purposes - * - * Provides a set of public methods for generating some commonly used HTG setups. - */ - -#include "vtkObject.h" -#include "vtkTestingDataModelModule.h" //for export macro - -#ifndef vtkTestHTGGenerator_h -#define vtkTestHTGGenerator_h - -class vtkHyperTreeGrid; -class vtkHyperTreeGridNonOrientedCursor; -class vtkDoubleArray; - -class VTKTESTINGDATAMODEL_EXPORT vtkTestHTGGenerator : public vtkObject -{ -public: - /** - * Standard object factory setup - */ - vtkTypeMacro(vtkTestHTGGenerator, vtkObject); - void PrintSelf(std::ostream& os, vtkIndent indent) override; - static vtkTestHTGGenerator* New(); - - /** - * Getter method for the HTG variable - */ - vtkHyperTreeGrid* GetHTG() const { return this->HTG; }; - - /** - * Helper methods for generating HTGs - */ - template - void generateUnbalanced( - const std::array& extent, const std::array& subdivisions); - - template - void generateBalanced( - const std::array& extent, const std::array& subdivisions); - - /** - * Specializations - */ - void generateUnbalanced3DepthQuadTree2x3(); - - void generateBalanced3DepthQuadTree2x3(); - - void generateUnbalanced2Depth3BranchTree3x3(); - - void generateBalanced4Depth3BranchTree2x2(); - - void generateUnbalanced3DepthOctTree3x2x3(); - - void generateBalanced2Depth3BranchTree3x3x2(); - - void clear() { this->HTG = nullptr; }; - -protected: - /** - * Contructor setup - */ - vtkTestHTGGenerator() { this->HTG = nullptr; }; - ~vtkTestHTGGenerator() { this->clear(); }; - vtkTestHTGGenerator(const vtkTestHTGGenerator&) = delete; - - void operator=(const vtkTestHTGGenerator&) = delete; - - template - void preprocess( - const std::array& extent, const std::array& subdivisions); - - void recurseBalanced( - vtkHyperTreeGridNonOrientedCursor* cursor, vtkDoubleArray* levels, const int maxDepth); - - /** - * Internal HTG - */ - vtkHyperTreeGrid* HTG; - -}; // vtkTestHTGGenerator - -#endif // vtkTestHTGGenerator_h -- GitLab From adbc4a1f63ddd8b5cab2687c5d79110b5e3e126a Mon Sep 17 00:00:00 2001 From: Julien Fausty Date: Fri, 20 May 2022 11:13:40 +0200 Subject: [PATCH 0254/1015] added (smoke) testing --- Filters/Sources/Testing/Cxx/CMakeLists.txt | 1 + .../TestHyperTreeGridPreConfiguredSource.cxx | 66 ++++++++ .../vtkHyperTreeGridPreConfiguredSource.cxx | 146 ++++++++---------- .../vtkHyperTreeGridPreConfiguredSource.h | 30 ++-- 4 files changed, 148 insertions(+), 95 deletions(-) create mode 100644 Filters/Sources/Testing/Cxx/TestHyperTreeGridPreConfiguredSource.cxx diff --git a/Filters/Sources/Testing/Cxx/CMakeLists.txt b/Filters/Sources/Testing/Cxx/CMakeLists.txt index 22d53508fd20..6d60a799a784 100644 --- a/Filters/Sources/Testing/Cxx/CMakeLists.txt +++ b/Filters/Sources/Testing/Cxx/CMakeLists.txt @@ -12,6 +12,7 @@ vtk_add_test_cxx(vtkFiltersSourcesCxxTests tests TestFrustumSource.cxx,NO_VALID TestGlyphSource2D.cxx,NO_VALID TestGlyphSource2DResolution.cxx, + TestHyperTreeGridPreConfiguredSource.cxx,NO_VALID TestLineSource.cxx,NO_VALID TestMultiBlock.cxx TestOutlineCornerSource.cxx,NO_VALID diff --git a/Filters/Sources/Testing/Cxx/TestHyperTreeGridPreConfiguredSource.cxx b/Filters/Sources/Testing/Cxx/TestHyperTreeGridPreConfiguredSource.cxx new file mode 100644 index 000000000000..23465d9f3687 --- /dev/null +++ b/Filters/Sources/Testing/Cxx/TestHyperTreeGridPreConfiguredSource.cxx @@ -0,0 +1,66 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestRandomHyperTreeGridSource.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ + +#include "vtkHyperTreeGrid.h" +#include "vtkHyperTreeGridGeometry.h" +#include "vtkHyperTreeGridPreConfiguredSource.h" + +#include "vtkNew.h" + +// Mostly smoke test +int TestHyperTreeGridPreConfiguredSource(int, char*[]) +{ + vtkNew myGenerator; + + vtkNew geom; + geom->SetInputConnection(myGenerator->GetOutputPort()); + + myGenerator->SetHTGMode(vtkHyperTreeGridPreConfiguredSource::UNBALANCED_3DEPTH_2BRANCH_2X3); + + geom->Update(); + + myGenerator->SetHTGMode(vtkHyperTreeGridPreConfiguredSource::BALANCED_3DEPTH_2BRANCH_2X3); + + geom->Update(); + + myGenerator->SetHTGMode(vtkHyperTreeGridPreConfiguredSource::UNBALANCED_2DEPTH_3BRANCH_3X3); + + geom->Update(); + + myGenerator->SetHTGMode(vtkHyperTreeGridPreConfiguredSource::BALANCED_4DEPTH_3BRANCH_2X2); + + geom->Update(); + + myGenerator->SetHTGMode(vtkHyperTreeGridPreConfiguredSource::UNBALANCED_3DEPTH_2BRANCH_3X2X3); + + geom->Update(); + + myGenerator->SetHTGMode(vtkHyperTreeGridPreConfiguredSource::BALANCED_2DEPTH_3BRANCH_3X3X2); + + geom->Update(); + + myGenerator->SetHTGMode(vtkHyperTreeGridPreConfiguredSource::CUSTOM); + + geom->Update(); + + myGenerator->SetCustomArchitecture(vtkHyperTreeGridPreConfiguredSource::BALANCED); + myGenerator->SetCustomDim(3); + myGenerator->SetCustomFactor(2); + myGenerator->SetCustomDepth(4); + + geom->Update(); + + return EXIT_SUCCESS; +} diff --git a/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx index c109f4206e31..a19c56522b3a 100644 --- a/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx +++ b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx @@ -30,19 +30,21 @@ vtkStandardNewMacro(vtkHyperTreeGridPreConfiguredSource); vtkHyperTreeGridPreConfiguredSource::vtkHyperTreeGridPreConfiguredSource() - : CustomDim(2) + : HTGMode(UNBALANCED_3DEPTH_2BRANCH_2X3) + , CustomArchitecture(UNBALANCED) + , CustomDim(2) , CustomFactor(2) , CustomDepth(2) - , CustomSubdivisions(2, 2) { this->SetNumberOfInputPorts(0); this->SetNumberOfOutputPorts(1); this->AppropriateOutput = true; - this->CustomExtent.resize(4); - this->CustomExtent[0] = this->CustomExtent[2] = 0.0; - this->CustomExtent[1] = this->CustomExtent[3] = 1.0; + this->CustomExtent[0] = this->CustomExtent[2] = this->CustomExtent[4] = 0.0; + this->CustomExtent[1] = this->CustomExtent[3] = this->CustomExtent[5] = 1.0; + + this->CustomSubdivisions[0] = this->CustomSubdivisions[1] = this->CustomSubdivisions[2] = 2; } int vtkHyperTreeGridPreConfiguredSource::FillOutputPortInformation(int, vtkInformation* info) @@ -59,8 +61,8 @@ int vtkHyperTreeGridPreConfiguredSource::RequestInformation( return 0; } int wholeExtent[6] = { 0, 1, 0, 1, 0, 1 }; - int dimension = 2; - int depth = 3; + unsigned int dimension = 2; + unsigned int depth = 3; switch (this->HTGMode) { case UNBALANCED_3DEPTH_2BRANCH_2X3: @@ -86,9 +88,12 @@ int vtkHyperTreeGridPreConfiguredSource::RequestInformation( depth = 2; break; case CUSTOM: - std::copy(this->CustomExtent.begin(), this->CustomExtent.end(), wholeExtent); + wholeExtent[1] = this->CustomSubdivisions[0] - 1; + wholeExtent[3] = this->CustomSubdivisions[1] - 1; + wholeExtent[5] = this->CustomSubdivisions[2] - 1; dimension = this->CustomDim; depth = this->CustomDepth; + break; default: vtkErrorMacro("No suitable HTG mode found."); return 0; @@ -159,8 +164,9 @@ int vtkHyperTreeGridPreConfiguredSource::ProcessTrees( return 1; } -void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced(vtkHyperTreeGrid* HTG, int dim, - int factor, int depth, const std::vector& extent, const std::vector& subdivisions) +void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced(vtkHyperTreeGrid* HTG, + unsigned int dim, unsigned int factor, unsigned int depth, const std::vector& extent, + const std::vector& subdivisions) { this->Preprocess(HTG, dim, factor, extent, subdivisions); @@ -189,11 +195,7 @@ void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced(vtkHyperTreeGrid* H } vtkIdType treeOffset = cursor->GetTree()->GetNumberOfVertices(); - int nTrees = 1; - for (auto sub : subdivisions) - { - nTrees *= (sub - 1); - } + vtkIdType nTrees = HTG->GetMaxNumberOfTrees(); for (int iT = 1; iT < nTrees; iT++) { cursor = vtk::TakeSmartPointer(HTG->NewNonOrientedCursor(iT, true)); @@ -205,8 +207,9 @@ void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced(vtkHyperTreeGrid* H } } -void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced(vtkHyperTreeGrid* HTG, int dim, - int factor, int depth, const std::vector& extent, const std::vector& subdivisions) +void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced(vtkHyperTreeGrid* HTG, unsigned int dim, + unsigned int factor, unsigned int depth, const std::vector& extent, + const std::vector& subdivisions) { this->Preprocess(HTG, dim, factor, extent, subdivisions); @@ -217,11 +220,7 @@ void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced(vtkHyperTreeGrid* HTG HTG->GetCellData()->AddArray(levels); vtkIdType treeOffset = 0; - int nTrees = 1; - for (auto sub : subdivisions) - { - nTrees *= (sub - 1); - } + vtkIdType nTrees = HTG->GetMaxNumberOfTrees(); for (int iT = 0; iT < nTrees; iT++) { auto cursor = vtk::TakeSmartPointer(HTG->NewNonOrientedCursor(iT, true)); @@ -261,8 +260,9 @@ void vtkHyperTreeGridPreConfiguredSource::RecurseBalanced( } } -void vtkHyperTreeGridPreConfiguredSource::Preprocess(vtkHyperTreeGrid* HTG, int dim, int factor, - const std::vector& extent, const std::vector& subdivisions) +void vtkHyperTreeGridPreConfiguredSource::Preprocess(vtkHyperTreeGrid* HTG, unsigned int dim, + unsigned int factor, const std::vector& extent, + const std::vector& subdivisions) { if (extent.size() < static_cast(2 * dim)) { @@ -275,46 +275,53 @@ void vtkHyperTreeGridPreConfiguredSource::Preprocess(vtkHyperTreeGrid* HTG, int return; } HTG->Initialize(); - std::array subdivisions3d = { 1, 1, 1 }; + std::array subdivisions3d = { 1, 1, 1 }; std::copy(subdivisions.begin(), subdivisions.end(), subdivisions3d.begin()); HTG->SetDimensions(subdivisions3d.data()); HTG->SetBranchFactor(factor); - for (int d = 0; d < dim; d++) - { - vtkNew vtkCoords; - vtkCoords->SetNumberOfComponents(1); - vtkCoords->SetNumberOfTuples(subdivisions[d]); - double step = (extent[d * 2 + 1] - extent[d * 2]) / (subdivisions[d] - 1.0); - for (int i = 0; i < subdivisions[d]; i++) - { - vtkCoords->InsertValue(i, extent[d * 2] + step * i); - } - switch (d) + + auto fillArray = []( + vtkDoubleArray* array, vtkIdType numPoints, double minBound, double maxBound) { + array->SetNumberOfComponents(1); + array->SetNumberOfTuples(numPoints); + double step = (maxBound - minBound) / static_cast(numPoints - 1); + for (int i = 0; i < numPoints; ++i) { - case (0): - HTG->SetXCoordinates(vtkCoords); - break; - case (1): - HTG->SetYCoordinates(vtkCoords); - break; - case (2): - HTG->SetZCoordinates(vtkCoords); - break; + array->SetTypedComponent(i, 0, minBound + step * i); } + }; + { + vtkNew vtkCoords; + fillArray(vtkCoords, subdivisions[0], extent[0], extent[1]); + HTG->SetXCoordinates(vtkCoords); + } + + if (dim > 1) + { + vtkNew vtkCoords; + fillArray(vtkCoords, subdivisions[1], extent[2], extent[3]); + HTG->SetYCoordinates(vtkCoords); + } + + if (dim > 2) + { + vtkNew vtkCoords; + fillArray(vtkCoords, subdivisions[2], extent[4], extent[5]); + HTG->SetZCoordinates(vtkCoords); } } void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced3DepthQuadTree2x3(vtkHyperTreeGrid* HTG) { std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; - std::vector subdivisions = { 2, 3 }; + std::vector subdivisions = { 2, 3 }; this->GenerateUnbalanced(HTG, 2, 2, 3, extent, subdivisions); } void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced3DepthQuadTree2x3(vtkHyperTreeGrid* HTG) { std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; - std::vector subdivisions = { 2, 3 }; + std::vector subdivisions = { 2, 3 }; this->GenerateBalanced(HTG, 2, 2, 3, extent, subdivisions); } @@ -322,7 +329,7 @@ void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced2Depth3BranchTree3x3 vtkHyperTreeGrid* HTG) { std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; - std::vector subdivisions = { 3, 3 }; + std::vector subdivisions = { 3, 3 }; this->GenerateUnbalanced(HTG, 2, 3, 2, extent, subdivisions); } @@ -330,7 +337,7 @@ void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced4Depth3BranchTree2x2( vtkHyperTreeGrid* HTG) { std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; - std::vector subdivisions = { 2, 2 }; + std::vector subdivisions = { 2, 2 }; this->GenerateBalanced(HTG, 2, 3, 4, extent, subdivisions); } @@ -338,7 +345,7 @@ void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced3DepthOctTree3x2x3( vtkHyperTreeGrid* HTG) { std::vector extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; - std::vector subdivisions = { 3, 2, 3 }; + std::vector subdivisions = { 3, 2, 3 }; this->GenerateUnbalanced(HTG, 3, 2, 3, extent, subdivisions); } @@ -346,56 +353,33 @@ void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced2Depth3BranchTree3x3x2 vtkHyperTreeGrid* HTG) { std::vector extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; - std::vector subdivisions = { 3, 3, 2 }; + std::vector subdivisions = { 3, 3, 2 }; this->GenerateBalanced(HTG, 3, 3, 2, extent, subdivisions); } int vtkHyperTreeGridPreConfiguredSource::GenerateCustom(vtkHyperTreeGrid* HTG) { - if (this->CustomExtent.size() < static_cast(this->CustomDim * 2)) - { - vtkErrorMacro("Custom extent array is not long enough"); - return 0; - } - - if (this->CustomSubdivisions.size() < static_cast(this->CustomDim)) - { - vtkErrorMacro("Custom subdivisions array is not long enough"); - return 0; - } - switch (this->CustomArchitecture) { case BALANCED: { this->GenerateBalanced(HTG, this->CustomDim, this->CustomFactor, this->CustomDepth, - this->CustomExtent, this->CustomSubdivisions); + std::vector(this->CustomExtent, this->CustomExtent + this->CustomDim * 2), + std::vector( + this->CustomSubdivisions, this->CustomSubdivisions + this->CustomDim)); break; } case UNBALANCED: { this->GenerateUnbalanced(HTG, this->CustomDim, this->CustomFactor, this->CustomDepth, - this->CustomExtent, this->CustomSubdivisions); + std::vector(this->CustomExtent, this->CustomExtent + this->CustomDim * 2), + std::vector( + this->CustomSubdivisions, this->CustomSubdivisions + this->CustomDim)); break; } default: + vtkErrorMacro("Using an HTGArchitecture not yet supported by the source"); return 0; } return 1; } - -void vtkHyperTreeGridPreConfiguredSource::SetCustomExtent(int extentSize, double* extent) -{ - vtkDebugMacro(<< "setting CustomExtent dynamically"); - this->CustomExtent.resize(extentSize); - std::copy(extent, extent + extentSize, this->CustomExtent.begin()); - this->Modified(); -} - -void vtkHyperTreeGridPreConfiguredSource::SetCustomSubdivisions(int subSize, int* subdivisions) -{ - vtkDebugMacro(<< "setting CustomSubdivisons dynamically"); - this->CustomSubdivisions.resize(subSize); - std::copy(subdivisions, subdivisions + subSize, this->CustomSubdivisions.begin()); - this->Modified(); -} diff --git a/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.h b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.h index ebc18a324d2a..1a5ac94653eb 100644 --- a/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.h +++ b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.h @@ -44,16 +44,18 @@ public: /** * Helper methods for generating HTGs */ - void GenerateUnbalanced(vtkHyperTreeGrid* HTG, int dim, int factor, int depth, - const std::vector& extent, const std::vector& subdivisions); + void GenerateUnbalanced(vtkHyperTreeGrid* HTG, unsigned int dim, unsigned int factor, + unsigned int depth, const std::vector& extent, + const std::vector& subdivisions); - void GenerateBalanced(vtkHyperTreeGrid* HTG, int dim, int factor, int depth, - const std::vector& extent, const std::vector& subdivisions); + void GenerateBalanced(vtkHyperTreeGrid* HTG, unsigned int dim, unsigned int factor, + unsigned int depth, const std::vector& extent, + const std::vector& subdivisions); ///@} ///@{ /** - * \enum An enum type for referencing preconfigured HTGs + * An enum type for referencing preconfigured HTGs */ enum HTGType { @@ -69,7 +71,7 @@ public: ///@{ /** - * \enum An enum type for configuring the type of generation for the CUSTOM HTG type + * An enum type for configuring the type of generation for the CUSTOM HTG type */ enum HTGArchitecture { @@ -112,14 +114,14 @@ public: /** * Get/Set for custom extent in coordinate space */ - void SetCustomExtent(int extentSize, double* extent); - double* GetCustomExtent() { return CustomExtent.data(); }; + vtkGetVector6Macro(CustomExtent, double); + vtkSetVector6Macro(CustomExtent, double); /** * Get/Set for custom subdivisions of the extent */ - void SetCustomSubdivisions(int subSize, int* subdivisions); - int* GetCustomSubdivisions() { return CustomSubdivisions.data(); }; + vtkGetVector3Macro(CustomSubdivisions, unsigned int); + vtkSetVector3Macro(CustomSubdivisions, unsigned int); ///@} ///@{ @@ -162,8 +164,8 @@ protected: /** * Common preprocessing for setting up the HyperTreeGrid for all types */ - void Preprocess(vtkHyperTreeGrid* HTG, int dim, int factor, const std::vector& extent, - const std::vector& subdivisions); + void Preprocess(vtkHyperTreeGrid* HTG, unsigned int dim, unsigned int factor, + const std::vector& extent, const std::vector& subdivisions); /** * Recursive helper for the BALANCED architecture @@ -185,8 +187,8 @@ protected: unsigned int CustomDim; unsigned int CustomFactor; unsigned int CustomDepth; - std::vector CustomExtent; - std::vector CustomSubdivisions; + double CustomExtent[6]; + unsigned int CustomSubdivisions[3]; ///@} }; // vtkHyperTreeGridPreConfiguredSource -- GitLab From 1dc0790d1a9072903db7e8abd778d5eb848bf372 Mon Sep 17 00:00:00 2001 From: Julien Fausty Date: Tue, 24 May 2022 10:36:03 +0200 Subject: [PATCH 0255/1015] add baseline --- .../Baseline/TestHyperTreeGridPreConfiguredSource.png.sha512 | 1 + 1 file changed, 1 insertion(+) create mode 100644 Filters/Sources/Testing/Data/Baseline/TestHyperTreeGridPreConfiguredSource.png.sha512 diff --git a/Filters/Sources/Testing/Data/Baseline/TestHyperTreeGridPreConfiguredSource.png.sha512 b/Filters/Sources/Testing/Data/Baseline/TestHyperTreeGridPreConfiguredSource.png.sha512 new file mode 100644 index 000000000000..78fd4479870d --- /dev/null +++ b/Filters/Sources/Testing/Data/Baseline/TestHyperTreeGridPreConfiguredSource.png.sha512 @@ -0,0 +1 @@ +8c8ed0796f74df654b73fd339ab83ca297b3cd48bdbc2501d10a42d64ee989fced5f10a66a300bfa2fbd0ad6baea1345964d9449db41b5300f1a805f998a2195 -- GitLab From 60c362bbb9a66412fd0baf994387fb9f05fd1955 Mon Sep 17 00:00:00 2001 From: Julien Fausty Date: Tue, 24 May 2022 10:40:35 +0200 Subject: [PATCH 0256/1015] improved testing with baseline + minor review changes --- ...dd-vtkHyperTreeGridPreConfiguredSource.md} | 2 +- Filters/Sources/Testing/Cxx/CMakeLists.txt | 2 +- .../TestHyperTreeGridPreConfiguredSource.cxx | 46 ++++++++- .../vtkHyperTreeGridPreConfiguredSource.cxx | 99 ++++++++++--------- 4 files changed, 98 insertions(+), 51 deletions(-) rename Documentation/release/dev/{add-vtkTestHTGGenerator.md => add-vtkHyperTreeGridPreConfiguredSource.md} (67%) diff --git a/Documentation/release/dev/add-vtkTestHTGGenerator.md b/Documentation/release/dev/add-vtkHyperTreeGridPreConfiguredSource.md similarity index 67% rename from Documentation/release/dev/add-vtkTestHTGGenerator.md rename to Documentation/release/dev/add-vtkHyperTreeGridPreConfiguredSource.md index 7ad2f682089b..3ca16bf0fa0a 100644 --- a/Documentation/release/dev/add-vtkTestHTGGenerator.md +++ b/Documentation/release/dev/add-vtkHyperTreeGridPreConfiguredSource.md @@ -2,4 +2,4 @@ When writing tests for features that act on HyperTreeGrids (HTGs) it can be annoying and error prone to have to generate the data every time. This leads to either testing that takes a long time to write or that only is tested on one kind of HTG. ## Feature -Introduce a helper class `vtkTestHTGGenerator` that just serves to generate some specific types of HTGs for testing. +Introduce a helper class `vtkHyperTreeGridPreConfiguredSource` that just serves to generate some specific types of HTGs for testing. diff --git a/Filters/Sources/Testing/Cxx/CMakeLists.txt b/Filters/Sources/Testing/Cxx/CMakeLists.txt index 6d60a799a784..3f7e741215e9 100644 --- a/Filters/Sources/Testing/Cxx/CMakeLists.txt +++ b/Filters/Sources/Testing/Cxx/CMakeLists.txt @@ -12,7 +12,7 @@ vtk_add_test_cxx(vtkFiltersSourcesCxxTests tests TestFrustumSource.cxx,NO_VALID TestGlyphSource2D.cxx,NO_VALID TestGlyphSource2DResolution.cxx, - TestHyperTreeGridPreConfiguredSource.cxx,NO_VALID + TestHyperTreeGridPreConfiguredSource.cxx TestLineSource.cxx,NO_VALID TestMultiBlock.cxx TestOutlineCornerSource.cxx,NO_VALID diff --git a/Filters/Sources/Testing/Cxx/TestHyperTreeGridPreConfiguredSource.cxx b/Filters/Sources/Testing/Cxx/TestHyperTreeGridPreConfiguredSource.cxx index 23465d9f3687..198f77366eda 100644 --- a/Filters/Sources/Testing/Cxx/TestHyperTreeGridPreConfiguredSource.cxx +++ b/Filters/Sources/Testing/Cxx/TestHyperTreeGridPreConfiguredSource.cxx @@ -17,9 +17,15 @@ #include "vtkHyperTreeGridGeometry.h" #include "vtkHyperTreeGridPreConfiguredSource.h" +#include "vtkActor.h" +#include "vtkLookupTable.h" #include "vtkNew.h" +#include "vtkPolyDataMapper.h" +#include "vtkProperty.h" +#include "vtkRenderWindow.h" +#include "vtkRenderWindowInteractor.h" +#include "vtkRenderer.h" -// Mostly smoke test int TestHyperTreeGridPreConfiguredSource(int, char*[]) { vtkNew myGenerator; @@ -55,12 +61,44 @@ int TestHyperTreeGridPreConfiguredSource(int, char*[]) geom->Update(); - myGenerator->SetCustomArchitecture(vtkHyperTreeGridPreConfiguredSource::BALANCED); - myGenerator->SetCustomDim(3); - myGenerator->SetCustomFactor(2); + myGenerator->SetCustomArchitecture(vtkHyperTreeGridPreConfiguredSource::UNBALANCED); + myGenerator->SetCustomDim(2); + myGenerator->SetCustomFactor(3); myGenerator->SetCustomDepth(4); geom->Update(); + vtkNew mapper; + mapper->SetInputConnection(geom->GetOutputPort()); + + vtkNew lut; + lut->SetNumberOfTableValues(5); + lut->SetTableRange(0, 4); + + mapper->ScalarVisibilityOn(); + mapper->SetLookupTable(lut); + mapper->UseLookupTableScalarRangeOn(); + mapper->SetScalarModeToUseCellFieldData(); + mapper->ColorByArrayComponent("Depth", 0); + mapper->InterpolateScalarsBeforeMappingOn(); + + vtkNew actor; + actor->SetMapper(mapper); + actor->GetProperty()->SetRepresentationToSurface(); + actor->GetProperty()->EdgeVisibilityOn(); + + vtkNew renderer; + renderer->AddActor(actor); + + vtkNew renWin; + renWin->AddRenderer(renderer.Get()); + + vtkNew iren; + iren->SetRenderWindow(renWin.Get()); + + renWin->Render(); + + iren->Start(); + return EXIT_SUCCESS; } diff --git a/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx index a19c56522b3a..e7edcdda98f2 100644 --- a/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx +++ b/Filters/Sources/vtkHyperTreeGridPreConfiguredSource.cxx @@ -27,6 +27,9 @@ #include "vtkHyperTreeGrid.h" #include "vtkHyperTreeGridNonOrientedCursor.h" +#include +#include + vtkStandardNewMacro(vtkHyperTreeGridPreConfiguredSource); vtkHyperTreeGridPreConfiguredSource::vtkHyperTreeGridPreConfiguredSource() @@ -116,42 +119,47 @@ int vtkHyperTreeGridPreConfiguredSource::RequestData(vtkInformation* vtkNotUsed( vtkErrorMacro("Output information not found"); return 0; } - vtkHyperTreeGrid* HTG = vtkHyperTreeGrid::GetData(outInfo); - if (!HTG) + vtkHyperTreeGrid* htg = vtkHyperTreeGrid::GetData(outInfo); + if (!htg) { vtkErrorMacro("Could not get HyperTreeGrid output"); return 0; } - return this->ProcessTrees(nullptr, HTG); + return this->ProcessTrees(nullptr, htg); } int vtkHyperTreeGridPreConfiguredSource::ProcessTrees( - vtkHyperTreeGrid* vtkNotUsed(inputObj), vtkDataObject* HTGObj) + vtkHyperTreeGrid* vtkNotUsed(inputObj), vtkDataObject* htgObj) { - vtkHyperTreeGrid* HTG = vtkHyperTreeGrid::SafeDownCast(HTGObj); + vtkHyperTreeGrid* htg = vtkHyperTreeGrid::SafeDownCast(htgObj); + if (!htg) + { + vtkErrorMacro("Could not cast vtkDataObject to vtkHyperTreeGrid"); + return 0; + } switch (this->HTGMode) { case UNBALANCED_3DEPTH_2BRANCH_2X3: - this->GenerateUnbalanced3DepthQuadTree2x3(HTG); + this->GenerateUnbalanced3DepthQuadTree2x3(htg); break; case BALANCED_3DEPTH_2BRANCH_2X3: - this->GenerateBalanced3DepthQuadTree2x3(HTG); + this->GenerateBalanced3DepthQuadTree2x3(htg); break; case UNBALANCED_2DEPTH_3BRANCH_3X3: - this->GenerateUnbalanced2Depth3BranchTree3x3(HTG); + this->GenerateUnbalanced2Depth3BranchTree3x3(htg); break; case BALANCED_4DEPTH_3BRANCH_2X2: - this->GenerateBalanced4Depth3BranchTree2x2(HTG); + this->GenerateBalanced4Depth3BranchTree2x2(htg); break; case UNBALANCED_3DEPTH_2BRANCH_3X2X3: - this->GenerateUnbalanced3DepthOctTree3x2x3(HTG); + this->GenerateUnbalanced3DepthOctTree3x2x3(htg); break; case BALANCED_2DEPTH_3BRANCH_3X3X2: - this->GenerateBalanced2Depth3BranchTree3x3x2(HTG); + this->GenerateBalanced2Depth3BranchTree3x3x2(htg); break; case CUSTOM: - if (!this->GenerateCustom(HTG)) + if (!this->GenerateCustom(htg)) { vtkErrorMacro("Could not generate custom HyperTreeGrid"); return 0; @@ -164,19 +172,19 @@ int vtkHyperTreeGridPreConfiguredSource::ProcessTrees( return 1; } -void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced(vtkHyperTreeGrid* HTG, +void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced(vtkHyperTreeGrid* htg, unsigned int dim, unsigned int factor, unsigned int depth, const std::vector& extent, const std::vector& subdivisions) { - this->Preprocess(HTG, dim, factor, extent, subdivisions); + this->Preprocess(htg, dim, factor, extent, subdivisions); vtkNew levels; levels->SetName("Depth"); levels->SetNumberOfComponents(1); levels->SetNumberOfTuples(0); - HTG->GetCellData()->AddArray(levels); + htg->GetCellData()->AddArray(levels); - auto cursor = vtk::TakeSmartPointer(HTG->NewNonOrientedCursor(0, true)); + auto cursor = vtk::TakeSmartPointer(htg->NewNonOrientedCursor(0, true)); cursor->GetTree()->SetGlobalIndexStart(0); levels->InsertValue(0, 0); for (vtkIdType l = 0; l < depth; l++) @@ -195,10 +203,10 @@ void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced(vtkHyperTreeGrid* H } vtkIdType treeOffset = cursor->GetTree()->GetNumberOfVertices(); - vtkIdType nTrees = HTG->GetMaxNumberOfTrees(); + vtkIdType nTrees = htg->GetMaxNumberOfTrees(); for (int iT = 1; iT < nTrees; iT++) { - cursor = vtk::TakeSmartPointer(HTG->NewNonOrientedCursor(iT, true)); + cursor = vtk::TakeSmartPointer(htg->NewNonOrientedCursor(iT, true)); vtkHyperTree* tree = cursor->GetTree(); tree->SetGlobalIndexStart(treeOffset); vtkIdType globId = tree->GetGlobalIndexFromLocal(0); @@ -207,23 +215,23 @@ void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced(vtkHyperTreeGrid* H } } -void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced(vtkHyperTreeGrid* HTG, unsigned int dim, +void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced(vtkHyperTreeGrid* htg, unsigned int dim, unsigned int factor, unsigned int depth, const std::vector& extent, const std::vector& subdivisions) { - this->Preprocess(HTG, dim, factor, extent, subdivisions); + this->Preprocess(htg, dim, factor, extent, subdivisions); vtkNew levels; levels->SetName("Depth"); levels->SetNumberOfComponents(1); levels->SetNumberOfTuples(0); - HTG->GetCellData()->AddArray(levels); + htg->GetCellData()->AddArray(levels); vtkIdType treeOffset = 0; - vtkIdType nTrees = HTG->GetMaxNumberOfTrees(); + vtkIdType nTrees = htg->GetMaxNumberOfTrees(); for (int iT = 0; iT < nTrees; iT++) { - auto cursor = vtk::TakeSmartPointer(HTG->NewNonOrientedCursor(iT, true)); + auto cursor = vtk::TakeSmartPointer(htg->NewNonOrientedCursor(iT, true)); cursor->GetTree()->SetGlobalIndexStart(treeOffset); this->RecurseBalanced(cursor, levels, depth); treeOffset += cursor->GetTree()->GetNumberOfVertices(); @@ -260,7 +268,7 @@ void vtkHyperTreeGridPreConfiguredSource::RecurseBalanced( } } -void vtkHyperTreeGridPreConfiguredSource::Preprocess(vtkHyperTreeGrid* HTG, unsigned int dim, +void vtkHyperTreeGridPreConfiguredSource::Preprocess(vtkHyperTreeGrid* htg, unsigned int dim, unsigned int factor, const std::vector& extent, const std::vector& subdivisions) { @@ -274,11 +282,11 @@ void vtkHyperTreeGridPreConfiguredSource::Preprocess(vtkHyperTreeGrid* HTG, unsi vtkErrorMacro("Supplied subdivisions is not long enough"); return; } - HTG->Initialize(); + htg->Initialize(); std::array subdivisions3d = { 1, 1, 1 }; std::copy(subdivisions.begin(), subdivisions.end(), subdivisions3d.begin()); - HTG->SetDimensions(subdivisions3d.data()); - HTG->SetBranchFactor(factor); + htg->SetDimensions(subdivisions3d.data()); + htg->SetBranchFactor(factor); auto fillArray = []( vtkDoubleArray* array, vtkIdType numPoints, double minBound, double maxBound) { @@ -290,80 +298,81 @@ void vtkHyperTreeGridPreConfiguredSource::Preprocess(vtkHyperTreeGrid* HTG, unsi array->SetTypedComponent(i, 0, minBound + step * i); } }; + { vtkNew vtkCoords; fillArray(vtkCoords, subdivisions[0], extent[0], extent[1]); - HTG->SetXCoordinates(vtkCoords); + htg->SetXCoordinates(vtkCoords); } if (dim > 1) { vtkNew vtkCoords; fillArray(vtkCoords, subdivisions[1], extent[2], extent[3]); - HTG->SetYCoordinates(vtkCoords); + htg->SetYCoordinates(vtkCoords); } if (dim > 2) { vtkNew vtkCoords; fillArray(vtkCoords, subdivisions[2], extent[4], extent[5]); - HTG->SetZCoordinates(vtkCoords); + htg->SetZCoordinates(vtkCoords); } } -void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced3DepthQuadTree2x3(vtkHyperTreeGrid* HTG) +void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced3DepthQuadTree2x3(vtkHyperTreeGrid* htg) { std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; std::vector subdivisions = { 2, 3 }; - this->GenerateUnbalanced(HTG, 2, 2, 3, extent, subdivisions); + this->GenerateUnbalanced(htg, 2, 2, 3, extent, subdivisions); } -void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced3DepthQuadTree2x3(vtkHyperTreeGrid* HTG) +void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced3DepthQuadTree2x3(vtkHyperTreeGrid* htg) { std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; std::vector subdivisions = { 2, 3 }; - this->GenerateBalanced(HTG, 2, 2, 3, extent, subdivisions); + this->GenerateBalanced(htg, 2, 2, 3, extent, subdivisions); } void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced2Depth3BranchTree3x3( - vtkHyperTreeGrid* HTG) + vtkHyperTreeGrid* htg) { std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; std::vector subdivisions = { 3, 3 }; - this->GenerateUnbalanced(HTG, 2, 3, 2, extent, subdivisions); + this->GenerateUnbalanced(htg, 2, 3, 2, extent, subdivisions); } void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced4Depth3BranchTree2x2( - vtkHyperTreeGrid* HTG) + vtkHyperTreeGrid* htg) { std::vector extent = { -1.0, 1.0, -1.0, 1.0 }; std::vector subdivisions = { 2, 2 }; - this->GenerateBalanced(HTG, 2, 3, 4, extent, subdivisions); + this->GenerateBalanced(htg, 2, 3, 4, extent, subdivisions); } void vtkHyperTreeGridPreConfiguredSource::GenerateUnbalanced3DepthOctTree3x2x3( - vtkHyperTreeGrid* HTG) + vtkHyperTreeGrid* htg) { std::vector extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; std::vector subdivisions = { 3, 2, 3 }; - this->GenerateUnbalanced(HTG, 3, 2, 3, extent, subdivisions); + this->GenerateUnbalanced(htg, 3, 2, 3, extent, subdivisions); } void vtkHyperTreeGridPreConfiguredSource::GenerateBalanced2Depth3BranchTree3x3x2( - vtkHyperTreeGrid* HTG) + vtkHyperTreeGrid* htg) { std::vector extent = { -1.0, 1.0, -1.0, 1.0, -1.0, 1.0 }; std::vector subdivisions = { 3, 3, 2 }; - this->GenerateBalanced(HTG, 3, 3, 2, extent, subdivisions); + this->GenerateBalanced(htg, 3, 3, 2, extent, subdivisions); } -int vtkHyperTreeGridPreConfiguredSource::GenerateCustom(vtkHyperTreeGrid* HTG) +int vtkHyperTreeGridPreConfiguredSource::GenerateCustom(vtkHyperTreeGrid* htg) { switch (this->CustomArchitecture) { case BALANCED: { - this->GenerateBalanced(HTG, this->CustomDim, this->CustomFactor, this->CustomDepth, + this->GenerateBalanced(htg, this->CustomDim, this->CustomFactor, this->CustomDepth, std::vector(this->CustomExtent, this->CustomExtent + this->CustomDim * 2), std::vector( this->CustomSubdivisions, this->CustomSubdivisions + this->CustomDim)); @@ -371,7 +380,7 @@ int vtkHyperTreeGridPreConfiguredSource::GenerateCustom(vtkHyperTreeGrid* HTG) } case UNBALANCED: { - this->GenerateUnbalanced(HTG, this->CustomDim, this->CustomFactor, this->CustomDepth, + this->GenerateUnbalanced(htg, this->CustomDim, this->CustomFactor, this->CustomDepth, std::vector(this->CustomExtent, this->CustomExtent + this->CustomDim * 2), std::vector( this->CustomSubdivisions, this->CustomSubdivisions + this->CustomDim)); -- GitLab From 9dc12c6e77105b583b5bc398f7ad8ce078ddd768 Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Fri, 29 Apr 2022 10:27:57 +0200 Subject: [PATCH 0257/1015] Add volumetric shadows Add monochromatic shadow rays, with linear progression, in case of shading. It is enabled by a property in vtkVolumeMapper's API. They use the jitter value. A second parameter, GlobalIlluminationReach, gives the user a balance between performance and shadows' globalness. --- .../dev/improve-gpu-volumetric-rendering.md | 20 ++ .../Cxx/TestGPURayCastMapperShadows.cxx | 277 ++++++++++++++++++ Rendering/Volume/vtkGPUVolumeRayCastMapper.h | 15 + Rendering/Volume/vtkVolumeMapper.h | 19 ++ .../VolumeOpenGL2/shaders/raycasterfs.glsl | 48 +++ .../vtkMultiBlockVolumeMapper.cxx | 33 +++ .../VolumeOpenGL2/vtkMultiBlockVolumeMapper.h | 21 ++ .../vtkOpenGLGPUVolumeRayCastMapper.cxx | 28 ++ .../VolumeOpenGL2/vtkSmartVolumeMapper.cxx | 4 + .../VolumeOpenGL2/vtkSmartVolumeMapper.h | 16 + .../VolumeOpenGL2/vtkVolumeShaderComposer.h | 177 ++++++++++- 11 files changed, 643 insertions(+), 15 deletions(-) create mode 100644 Documentation/release/dev/improve-gpu-volumetric-rendering.md create mode 100644 Rendering/Volume/Testing/Cxx/TestGPURayCastMapperShadows.cxx diff --git a/Documentation/release/dev/improve-gpu-volumetric-rendering.md b/Documentation/release/dev/improve-gpu-volumetric-rendering.md new file mode 100644 index 000000000000..4f0d33dc7358 --- /dev/null +++ b/Documentation/release/dev/improve-gpu-volumetric-rendering.md @@ -0,0 +1,20 @@ +# Improve GPU Volumetric Rendering + +## Improve stability + +VTK now detects more accurately unstable configurations (eg multi volume with incompatible lighting) +and disable the rendering in those cases. + +## Improve performance + +The shader composer now factorizes more data used during the raymarching loop. +You can also set more than 6 lights now. The system passing lights as uniforms +has also been improved. + +## Add shadow rays + +When the shading of a volume is enabled, you can now render volumetric shadows. These shadows are cast by the volume on itself, +not by surfaces. There is now an option in vtkVolumeMapper to enable it. +This option is considered only if the shading is also enabled. +A global illumination reach parameter controls the scope of secondary rays. A value of 0 means only local shadows and 1 means +that shadows will be computed through the whole volume. The higher this parameter is, the slower the rendering will be. diff --git a/Rendering/Volume/Testing/Cxx/TestGPURayCastMapperShadows.cxx b/Rendering/Volume/Testing/Cxx/TestGPURayCastMapperShadows.cxx new file mode 100644 index 000000000000..3c0a92a03375 --- /dev/null +++ b/Rendering/Volume/Testing/Cxx/TestGPURayCastMapperShadows.cxx @@ -0,0 +1,277 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestGPURayCastMapperShadows.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +static inline void idxToCoords(int idx[3], double spacing[3], double origin[3], double res[3]) +{ + for (int s = 0; s < 3; s++) + { + res[s] = origin[s] + spacing[s] * idx[s]; + } +} + +static inline void coordsToIdx(double coords[3], double spacing[3], double origin[3], int res[3]) +{ + for (int s = 0; s < 3; s++) + { + res[s] = (int)ceil((coords[s] - origin[s]) / spacing[s]); + if (res[s] < 0) + { + res[s] = 0; + } + } +} + +class ImageDataAABox +{ +private: + double CoordsMin[3] = { 0, 0, 0 }; + double CoordsMax[3] = { 0, 0, 0 }; + double BoxValue = 0.0; + +public: + ImageDataAABox() = default; + ImageDataAABox(double min[3], double max[3], double value = 0.0) + : BoxValue(value) + { + for (int i = 0; i < 3; i++) + { + CoordsMin[i] = min[i]; + CoordsMax[i] = max[i]; + } + }; + ImageDataAABox(double min_x, double min_y, double min_z, double max_x, double max_y, double max_z, + double value = 0.0) + { + CoordsMin[0] = min_x; + CoordsMin[1] = min_y; + CoordsMin[2] = min_z; + CoordsMax[0] = max_x; + CoordsMax[1] = max_y; + CoordsMax[2] = max_z; + BoxValue = value; + } + ~ImageDataAABox() = default; + + void SetValue(double value) { BoxValue = value; }; + + void AddBoxToArray(vtkFloatArray* data, vtkImageData* grid) + { + double origin[3]; + double spacing[3]; + int dimension[3]; + // doesn't support non-null extents, sorry ! + grid->GetOrigin(origin); + grid->GetSpacing(spacing); + grid->GetDimensions(dimension); + + int idxMin[3]; + int idxMax[3]; + coordsToIdx(CoordsMin, spacing, origin, idxMin); + coordsToIdx(CoordsMax, spacing, origin, idxMax); + + for (int s = 0; s < 3; s++) + { + if (idxMin[s] >= dimension[s]) + { + idxMin[s] = dimension[s] - 1; + } + if (idxMax[s] >= dimension[s]) + { + idxMax[s] = dimension[s] - 1; + } + } + + // now we fill the array + for (int i = idxMin[0]; i < idxMax[0]; i++) + { + for (int j = idxMin[1]; j < idxMax[1]; j++) + { + for (int k = idxMin[2]; k < idxMax[2]; k++) + { + int idxArray = k * dimension[0] * dimension[1] + j * dimension[0] + i; + float value = data->GetValue(idxArray); + value = BoxValue; + data->SetValue(idxArray, value); + } + } + } + }; +}; + +typedef std::vector BoxList; + +//----------------------------- +int TestGPURayCastMapperShadows(int argc, char* argv[]) +{ + cout << "CTEST_FULL_OUTPUT (Avoid ctest truncation of output)" << endl; + + // grid is between 0 and 1 in world coords + double origin[3] = { 0, 0, 0 }; + double spacing[3] = { 0.005, 0.005, 0.005 }; + int dimension[3] = { 200, 200, 200 }; + + BoxList Boxes; + // wall + Boxes.push_back(ImageDataAABox(0.05, 0.05, 0.05, 0.1, 0.95, 0.95, 1.0)); + // box + Boxes.push_back(ImageDataAABox(0.6, 0.35, 0.35, 0.9, 0.65, 0.65, 2.0)); + + // Camera Parameters + double camera_position[3] = { 1.85, -1.27, 0.97 }; + double camera_focal[3] = { 0.498, 0.498, 0.498 }; + double camera_up[3] = { 0.0, 0.0, 1.0 }; + double camera_parallel_scale = 1.2; + + //------------ + + vtkNew dataArray; + dataArray->SetNumberOfComponents(1); + dataArray->SetNumberOfTuples(static_cast(dimension[0] * dimension[1] * dimension[2])); + + // init to zero + memset(dataArray->GetVoidPointer(0), 0, + static_cast(dimension[0] * dimension[1] * dimension[2]) * sizeof(float)); + + vtkNew grid; + grid->SetOrigin(origin); + grid->SetSpacing(spacing); + grid->SetDimensions(dimension); + + // populate the array + for (auto& box : Boxes) + { + box.AddBoxToArray(dataArray, grid); + } + + grid->GetPointData()->SetScalars(dataArray); + + // volume properties + vtkNew volProp; + volProp->SetDiffuse(1.0); + volProp->SetSpecular(1.0); + volProp->SetSpecularPower(100.0); + volProp->SetShade(1); + volProp->SetInterpolationType(VTK_NEAREST_INTERPOLATION); + + volProp->SetTransferFunctionModeTo1D(); + + vtkNew opacityTF; + opacityTF->RemoveAllPoints(); + opacityTF->AddPoint(0.0, 0.0); + opacityTF->AddPoint(2.0, 0.8); + + vtkNew colorTF; + colorTF->RemoveAllPoints(); + colorTF->AddRGBPoint(0.0, 1.0, 1.0, 1.0); + colorTF->AddRGBPoint(1.0, 1.0, 1.0, 1.0); + colorTF->AddRGBPoint(1.8, 1.0, 0.0, 0.0); + colorTF->AddRGBPoint(2.0, 1.0, 0.0, 0.0); + + volProp->SetScalarOpacity(opacityTF); + volProp->SetScalarOpacityUnitDistance(spacing[0] * 0.1); + volProp->SetColor(colorTF); + + // Mapper + vtkNew volMapper; + volMapper->SetUseJittering(true); + volMapper->SetAutoAdjustSampleDistances(false); + volMapper->SetSampleDistance(spacing[0] * 0.5); + volMapper->SetInputData(grid); + volMapper->SetBlendModeToComposite(); + volMapper->SetVolumetricShadow(true); + volMapper->SetGlobalIlluminationReach(0.82); + + // Volume + vtkNew vol; + vol->SetMapper(volMapper); + vol->SetProperty(volProp); + + // Renderer + vtkNew ren; + ren->SetBackground(0.2, 0.2, 0.2); + ren->SetTwoSidedLighting(false); + ren->AddVolume(vol); + // -> light + ren->ClearLights(); + ren->RemoveAllLights(); + + double lightPosition[3] = { 1.3, 0.5, 1.0 }; + double lightFocalPoint[3] = { 0.0, 0.5, 0.2 }; + vtkNew light; + light->SetLightTypeToSceneLight(); + light->SetPosition(lightPosition); + light->SetPositional(true); + light->SetConeAngle(60); + light->SetFocalPoint(lightFocalPoint); + light->SetIntensity(1.0); + ren->AddLight(light); + + // -> camera + vtkCamera* cam = ren->GetActiveCamera(); + cam->SetPosition(camera_position); + cam->SetFocalPoint(camera_focal); + cam->SetViewUp(camera_up); + cam->SetParallelScale(camera_parallel_scale); + + // Render window + vtkNew renwin; + renwin->AddRenderer(ren); + renwin->SetSize(600, 600); + + // Render interactor + vtkNew renint; + renint->SetRenderWindow(renwin); + vtkNew renintstyle; + renint->SetInteractorStyle(renintstyle); + + renwin->Render(); + int retVal = vtkTesting::Test(argc, argv, renwin, 90); + if (retVal == vtkRegressionTester::DO_INTERACTOR) + { + renint->Start(); + } + + return !((retVal == vtkTesting::PASSED) || (retVal == vtkTesting::DO_INTERACTOR)); +} diff --git a/Rendering/Volume/vtkGPUVolumeRayCastMapper.h b/Rendering/Volume/vtkGPUVolumeRayCastMapper.h index a1a6ad664fc2..06a09ccbf0bf 100644 --- a/Rendering/Volume/vtkGPUVolumeRayCastMapper.h +++ b/Rendering/Volume/vtkGPUVolumeRayCastMapper.h @@ -265,6 +265,18 @@ public: vtkGetMacro(MaskBlendFactor, float); ///@} + ///@{ + /** + * This parameter acts as a balance between localness + * and globalness of shadows. + * A value of 0.0 will be faster, but we'll only capture local shadows. + * A value of 1.0 will be slower, but we'll capture all shadows. + * The default value is 0.0. + */ + vtkSetClampMacro(GlobalIlluminationReach, float, 0.0f, 1.0f); + vtkGetMacro(GlobalIlluminationReach, float); + ///@} + ///@{ /** * Enable or disable setting output of volume rendering to be @@ -521,6 +533,9 @@ protected: // Enable / disable stochastic jittering vtkTypeBool UseJittering; + // Secondary rays ambient/global adjustement coefficient + float GlobalIlluminationReach = 0.0; + // Enable / disable two pass rendering vtkTypeBool UseDepthPass; vtkContourValues* DepthPassContourValues; diff --git a/Rendering/Volume/vtkVolumeMapper.h b/Rendering/Volume/vtkVolumeMapper.h index 4beb53002f08..b7f9ee63f0d5 100644 --- a/Rendering/Volume/vtkVolumeMapper.h +++ b/Rendering/Volume/vtkVolumeMapper.h @@ -179,6 +179,20 @@ public: vtkBooleanMacro(ComputeNormalFromOpacity, bool); ///@} + ///@{ + /** + * If enabled, the volumes will self-shadow, i.e. they will cast shadows on themselves. + * It will only be considered if shading is enabled. + * Note that it can affect performances, especially when using a 2D TF or a gradient opacity. + * For now, it is only implemented in vtkGPUVolumeRayCastMapper. + * In vtkSmartVolumeMapper and in vtkMultiBlockVolumeMapper, this parameter is used when the + * GPU mapper is effectively used. It is disabled by default. + */ + vtkSetMacro(VolumetricShadow, bool); + vtkGetMacro(VolumetricShadow, bool); + vtkBooleanMacro(VolumetricShadow, bool); + ///@} + ///@{ /** * Set the flags for the cropping regions. The clipping planes divide the @@ -292,6 +306,11 @@ protected: */ bool ComputeNormalFromOpacity = false; + /** + * Enable/disable volumetric shadows + */ + bool VolumetricShadow = false; + /** * Threshold range for average intensity projection */ diff --git a/Rendering/VolumeOpenGL2/shaders/raycasterfs.glsl b/Rendering/VolumeOpenGL2/shaders/raycasterfs.glsl index 6d62d2cf91d4..7d931be35926 100644 --- a/Rendering/VolumeOpenGL2/shaders/raycasterfs.glsl +++ b/Rendering/VolumeOpenGL2/shaders/raycasterfs.glsl @@ -39,6 +39,7 @@ vec4 g_fragColor = vec4(0.0); /// ////////////////////////////////////////////////////////////////////////////// vec3 g_dirStep; +float g_lengthStep = 0.0; vec4 g_srcColor; vec4 g_eyePosObj; bool g_exit; @@ -56,6 +57,8 @@ vec3 g_rayTermination; // Termination point (depth, clip, etc) vec3 g_dataPos; vec3 g_terminatePos; +float g_jitterValue = 0.0; + //VTK::CustomUniforms::Dec //VTK::Output::Dec @@ -68,6 +71,47 @@ vec3 g_terminatePos; //VTK::Clipping::Dec +#define EPSILON 0.001 + +// Computes the intersection between a ray and a box +// The box should be axis aligned so we only give two arguments +struct Hit +{ + float tmin; + float tmax; +}; + +struct Ray +{ + vec3 origin; + vec3 dir; + vec3 invDir; +}; + +bool BBoxIntersect(const vec3 boxMin, const vec3 boxMax, const Ray r, out Hit hit) +{ + vec3 tbot = r.invDir * (boxMin - r.origin); + vec3 ttop = r.invDir * (boxMax - r.origin); + vec3 tmin = min(ttop, tbot); + vec3 tmax = max(ttop, tbot); + vec2 t = max(tmin.xx, tmin.yz); + float t0 = max(t.x, t.y); + t = min(tmax.xx, tmax.yz); + float t1 = min(t.x, t.y); + hit.tmin = t0; + hit.tmax = t1; + return t1 > max(t0, 0.0); +} + +// As BBoxIntersect requires the inverse of the ray coords, +// this function is used to avoid numerical issues +void safe_0_vector(inout Ray ray) +{ + if(abs(ray.dir.x) < EPSILON) ray.dir.x = sign(ray.dir.x) * EPSILON; + if(abs(ray.dir.y) < EPSILON) ray.dir.y = sign(ray.dir.y) * EPSILON; + if(abs(ray.dir.z) < EPSILON) ray.dir.z = sign(ray.dir.z) * EPSILON; +} + //VTK::Shading::Dec //VTK::BinaryMask::Dec @@ -88,6 +132,8 @@ vec3 g_terminatePos; //VTK::ComputeDensityGradient::Dec +//VTK::ComputeVolumetricShadow::Dec + //VTK::ComputeLighting::Dec //VTK::ComputeColor::Dec @@ -217,6 +263,8 @@ void initializeRayCast() //VTK::RenderToImage::Init //VTK::DepthPass::Init + + g_jitterValue = jitterValue; } /** diff --git a/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.cxx b/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.cxx index 2851a96783f4..cff822be57f8 100644 --- a/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.cxx +++ b/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.cxx @@ -335,6 +335,9 @@ vtkSmartVolumeMapper* vtkMultiBlockVolumeMapper::CreateMapper() mapper->SetCroppingRegionFlags(this->GetCroppingRegionFlags()); mapper->SetCroppingRegionPlanes(this->GetCroppingRegionPlanes()); mapper->SetTransfer2DYAxisArray(this->Transfer2DYAxisArray); + mapper->SetVolumetricShadow(this->VolumetricShadow); + mapper->SetGlobalIlluminationReach(this->GlobalIlluminationReach); + mapper->SetComputeNormalFromOpacity(this->ComputeNormalFromOpacity); vtkOpenGLGPUVolumeRayCastMapper* glMapper = vtkOpenGLGPUVolumeRayCastMapper::SafeDownCast(mapper->GetGPUMapper()); @@ -343,6 +346,8 @@ vtkSmartVolumeMapper* vtkMultiBlockVolumeMapper::CreateMapper() { glMapper->UseJitteringOn(); glMapper->SetComputeNormalFromOpacity(this->ComputeNormalFromOpacity); + glMapper->SetVolumetricShadow(this->VolumetricShadow); + glMapper->SetGlobalIlluminationReach(this->GlobalIlluminationReach); } return mapper; } @@ -558,6 +563,34 @@ void vtkMultiBlockVolumeMapper::SetComputeNormalFromOpacity(bool val) } } +//------------------------------------------------------------------------------ +void vtkMultiBlockVolumeMapper::SetVolumetricShadow(bool val) +{ + if (this->VolumetricShadow != val) + { + for (auto& mapper : this->Mappers) + { + mapper->SetVolumetricShadow(val); + } + this->VolumetricShadow = val; + this->Modified(); + } +} + +//------------------------------------------------------------------------------ +void vtkMultiBlockVolumeMapper::SetGlobalIlluminationReach(float val) +{ + if (this->GlobalIlluminationReach != val) + { + for (auto& mapper : this->Mappers) + { + mapper->SetGlobalIlluminationReach(val); + } + this->GlobalIlluminationReach = val; + this->Modified(); + } +} + //------------------------------------------------------------------------------ void vtkMultiBlockVolumeMapper::SetTransfer2DYAxisArray(const char* a) { diff --git a/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.h b/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.h index cc6e614b47e5..e6bdb6461052 100644 --- a/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.h +++ b/Rendering/VolumeOpenGL2/vtkMultiBlockVolumeMapper.h @@ -110,6 +110,22 @@ public: void SetComputeNormalFromOpacity(bool val) override; ///@} + ///@{ + /** + * VolumetricShadow exposed + * \sa vtkVolumeMapper::SetVolumetricShadow + */ + void SetVolumetricShadow(bool val) override; + ///@} + + ///@{ + /** + * @copydoc vtkSmartVolumeMapper::SetGlobalIlluminationReach(float) + */ + void SetGlobalIlluminationReach(float val); + vtkGetMacro(GlobalIlluminationReach, float); + ///@} + ///@{ /** * Cropping API from vtkVolumeMapper @@ -216,6 +232,11 @@ private: int VectorComponent; int RequestedRenderMode; + /** + * Secondary rays ambient/global adjustement coefficient + */ + float GlobalIlluminationReach = 0.0; + char* Transfer2DYAxisArray; }; #endif diff --git a/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx b/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx index f260f6c08385..0dcf379b744c 100644 --- a/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx +++ b/Rendering/VolumeOpenGL2/vtkOpenGLGPUVolumeRayCastMapper.cxx @@ -969,6 +969,27 @@ void vtkOpenGLGPUVolumeRayCastMapper::vtkInternal::SetLightingShaderParameters( prog->SetUniform1fv("in_lightExponent", this->NumberPositionalLights, lightExponent.data()); prog->SetUniform1fv("in_lightConeAngle", this->NumberPositionalLights, lightConeAngle.data()); } + + // Shadows extent parameter + if (this->Parent->GetVolumetricShadow()) + { + float shadowExtent = this->Parent->GetGlobalIlluminationReach(); + // we map the shadow extent from [0, 1] to [sampleDistance, sqrt(3)] + // 0.1 corresponds to the minimum length of a shadow ray (the texture unit cube has size 1) + // sqrt(3) corresponds to the maximum (the diagonal of the cube) + float* invTexMat = this->InvTexMatVec.data(); + float minCoef = VTK_FLOAT_MAX; + // only take 3x3 sub-matrix because it will be multplied by a vec4(..., 0.0) normalized vec + for (int i = 0; i < 3; i++) + { + // diagonal coefficient + minCoef = std::min(minCoef, std::abs(invTexMat[5 * i])); + } + float minExtent = minCoef * this->ActualSampleDistance; + constexpr float maxExtent = 1.73205; + shadowExtent = (minExtent - maxExtent) * std::pow(1.0 - shadowExtent, 0.33) + maxExtent; + prog->SetUniformf("in_giReach", shadowExtent); + } } //------------------------------------------------------------------------------ @@ -2431,6 +2452,13 @@ void vtkOpenGLGPUVolumeRayCastMapper::ReplaceShaderCompute( independentComponents, this->Impl->Transfer2DUseGradient)); } + if (this->GetVolumetricShadow()) + { + vtkShaderProgram::Substitute(fragmentShader, "//VTK::ComputeVolumetricShadow::Dec", + vtkvolume::ComputeVolumetricShadowDec(this, vol, numComps, independentComponents, + this->AssembledInputs, this->Impl->Transfer2DUseGradient)); + } + if (this->Impl->MultiVolume) { vtkShaderProgram::Substitute(fragmentShader, "//VTK::GradientCache::Dec", diff --git a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx index 897f230a5409..a34c20b6b5b4 100644 --- a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx +++ b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.cxx @@ -95,6 +95,8 @@ vtkSmartVolumeMapper::vtkSmartVolumeMapper() this->RayCastMapper->LockSampleDistanceToInputSpacingOn(); this->GPUMapper->LockSampleDistanceToInputSpacingOn(); this->GPUMapper->SetComputeNormalFromOpacity(this->ComputeNormalFromOpacity); + this->GPUMapper->SetVolumetricShadow(this->VolumetricShadow); + this->GPUMapper->SetGlobalIlluminationReach(this->GlobalIlluminationReach); // Default to the default mode - which will use the best option that // is supported by the hardware @@ -467,6 +469,8 @@ void vtkSmartVolumeMapper::ComputeRenderMode(vtkRenderer* ren, vtkVolume* vol) this->GPUMapper->SetSampleDistance(this->SampleDistance); this->GPUMapper->SetTransfer2DYAxisArray(this->Transfer2DYAxisArray); this->GPUMapper->SetComputeNormalFromOpacity(this->ComputeNormalFromOpacity); + this->GPUMapper->SetVolumetricShadow(this->VolumetricShadow); + this->GPUMapper->SetGlobalIlluminationReach(this->GlobalIlluminationReach); // Make the window current because we need the OpenGL context win->MakeCurrent(); diff --git a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h index e69b6a83942c..d4467d62e768 100644 --- a/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h +++ b/Rendering/VolumeOpenGL2/vtkSmartVolumeMapper.h @@ -293,6 +293,17 @@ public: vtkGetMacro(SampleDistance, float); ///@} + ///@{ + /** + * @copydoc vtkGPUVolumeRayCastMapper::SetGlobalIlluminationReach(float) + * + * This parameter is only used when the underlying mapper + * is a vtkGPUVolumeRayCastMapper. + */ + vtkSetClampMacro(GlobalIlluminationReach, float, 0.0f, 1.0f); + vtkGetMacro(GlobalIlluminationReach, float); + ///@} + /** * WARNING: INTERNAL METHOD - NOT INTENDED FOR GENERAL USE * Initialize rendering for this volume. @@ -456,6 +467,11 @@ protected: */ float SampleDistance; + /** + * Secondary rays ambient/global adjustement coefficient + */ + float GlobalIlluminationReach = 0.0; + /** * Set whether or not the sample distance should be automatically calculated * within the internal volume mapper diff --git a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h index 29cf62c1146d..d02abdfd3060 100644 --- a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h +++ b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h @@ -273,6 +273,11 @@ std::string BaseDeclarationFragment(vtkRenderer* vtkNotUsed(ren), vtkVolumeMappe toShaderStr << "uniform bool in_twoSidedLighting;\n"; } + if (mapper->GetVolumetricShadow()) + { + toShaderStr << "uniform float in_giReach;\n"; + } + if (totalNumberOfLights > 0) { std::string totalLights = std::to_string(totalNumberOfLights); @@ -438,15 +443,20 @@ std::string BaseInit(vtkRenderer* vtkNotUsed(ren), vtkVolumeMapper* mapper, \n // sub-step size we need to take at each raymarching step\ \n g_dirStep = (ip_inverseTextureDataAdjusted *\ \n vec4(rayDir, 0.0)).xyz * in_sampleDistance;\ + \n g_lengthStep = length(g_dirStep);\ \n"; + shaderStr << "\ + \n float jitterValue = 0.0;\ + \n"; + if (glMapper->GetBlendMode() != vtkVolumeMapper::SLICE_BLEND) { // Intersection is computed with g_rayOrigin, so we should not modify it with Slice mode if (glMapper->GetUseJittering()) { shaderStr << "\ - \n float jitterValue = texture2D(in_noiseSampler, gl_FragCoord.xy /\ + \n jitterValue = texture2D(in_noiseSampler, gl_FragCoord.xy /\ vec2(textureSize(in_noiseSampler, 0))).x;\ \n g_rayJitter = g_dirStep * jitterValue;\ \n"; @@ -893,6 +903,8 @@ std::string ComputeOpacityEvaluationCall(vtkOpenGLGPUVolumeRayCastMapper* vtkNot vtkOpenGLGPUVolumeRayCastMapper::VolumeInputMap& inputs, int noOfComponents, int independentComponents, int useGradYAxis, std::string position) { + // relies on the declaration of variables opacity, gradient, c, volume, index, scalar, gradTF, + // opacityTF, label in the scope std::string resStr; if (inputs.size() > 1) @@ -1154,6 +1166,14 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa int const transferMode = volProperty->GetTransferFunctionMode(); + bool const volumetricShadow = glMapper->GetVolumetricShadow(); + std::string volumetricCall = volumetricShadow + ? "\n vol_shadow = volumeShadow(g_dataPos, tex_light.xyz, 0.0, component, in_volume[0], " + "0, label);" + : ""; + std::string volumetricDeclarations = + volumetricShadow ? "\n float vol_shadow = 1.0;\n vec4 tex_light = vec4(0.0);\n" : "\n"; + // If shading is required, we compute a shading gradient (used for the shading model) if (shadeReqd) { @@ -1195,7 +1215,8 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa shaderStr += std::string("\ \n vec3 diffuse = vec3(0.0);\ \n vec3 specular = vec3(0.0);\ - \n vec3 normal = shading_gradient.xyz;\ + \n vec3 normal = shading_gradient.xyz;") + + volumetricDeclarations + std::string("\ \n float normalLength = length(normal);\ \n if (normalLength > 0.0)\ \n {\ @@ -1206,8 +1227,9 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n normal = vec3(0.0, 0.0, 0.0);\ \n }\ \n // XXX: normal is oriented inside the volume, so we take -g_ldir/-g_vdir \ - \n float nDotL = dot(normal, -g_ldir[0]);\ - \n vec3 r = normalize(2.0 * nDotL * normal + g_ldir[0]);\ + \n float nDotL = dot(normal, -g_ldir[0]);") + + (volumetricShadow ? std::string("\n tex_light = vec4(g_ldir[0], 0.0);") : std::string()) + + volumetricCall + std::string("\n vec3 r = normalize(2.0 * nDotL * normal + g_ldir[0]);\ \n float vDotR = dot(r, -g_vdir[0]);\ \n if (nDotL < 0.0 && in_twoSidedLighting)\ \n {\ @@ -1219,10 +1241,14 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n }\ \n if (nDotL > 0.0)\ \n {\ - \n diffuse = nDotL * in_diffuse[component] *\ + \n diffuse = ") + + (volumetricShadow ? std::string("vol_shadow * ") : std::string()) + + std::string("nDotL * in_diffuse[component] *\ \n in_lightDiffuseColor[0] * color.rgb;\ \n vDotR = max(vDotR, 0.0);\ - \n specular = pow(vDotR, in_shininess[component]) *\ + \n specular = ") + + (volumetricShadow ? std::string("vol_shadow * ") : std::string()) + + std::string(" pow(vDotR, in_shininess[component]) *\ \n in_specular[component] *\ \n in_lightSpecularColor[0];\ \n }\ @@ -1245,7 +1271,8 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n vec3 diffuse = vec3(0,0,0);\ \n vec3 specular = vec3(0,0,0);\ \n vec3 vertLightDirection;\ - \n vec3 normal = normalize((in_textureToEye[0] * vec4(shading_gradient.xyz, 0.0)).xyz);\ + \n vec3 normal = normalize((in_textureToEye[0] * vec4(shading_gradient.xyz, 0.0)).xyz);") + + volumetricDeclarations + std::string("\ \n vec3 lightDir;"); if (numberPositionalLights > 0) @@ -1256,7 +1283,13 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n lightDir = in_lightDirection[posNum];\ \n vertLightDirection = (g_fragWorldPos.xyz - in_lightPosition[posNum]);\ \n float distance = length(vertLightDirection);\ - \n vertLightDirection = normalize(vertLightDirection);\ + \n vertLightDirection = normalize(vertLightDirection);") + + (volumetricShadow ? std::string("\ + \n tex_light = g_eyeToTexture * vec4(in_lightPosition[posNum], 1.0);\ + \n if(tex_light.w > 0.0) tex_light /= tex_light.w;\ + \n vol_shadow = volumeShadow(g_dataPos, tex_light.xyz, 1.0, component, in_volume[0], 0, label);") + : std::string()) + + std::string("\ \n attenuation = 1.0 /\ \n (in_lightAttenuation[posNum].x\ \n + in_lightAttenuation[posNum].y * distance\ @@ -1283,7 +1316,9 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n }\ \n if (nDotL > 0.0)\ \n {\ - \n float df = max(0.0, attenuation * nDotL);\ + \n float df = max(0.0, ") + + (volumetricShadow ? std::string("vol_shadow * ") : std::string()) + + std::string(" attenuation * nDotL);\ \n diffuse += (df * in_lightDiffuseColor[posNum]);\ \n vec3 r = normalize(2.0 * nDotL * normal - vertLightDirection);\ \n float rDotV = dot(-viewDirection, r);\ @@ -1293,7 +1328,9 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n }\ \n if (rDotV > 0.0)\ \n {\ - \n float sf = attenuation * pow(rDotV, in_shininess[component]);\ + \n float sf = ") + + (volumetricShadow ? std::string("vol_shadow * ") : std::string()) + + std::string(" attenuation * pow(rDotV, in_shininess[component]);\ \n specular += (sf * in_lightSpecularColor[posNum]);\ \n }\ \n }\ @@ -1301,10 +1338,16 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n }"); } - shaderStr += std::string( - "\n for (int dirNum = NUMBER_POS_LIGHTS; dirNum < TOTAL_NUMBER_LIGHTS; dirNum++)\ + shaderStr += + std::string( + "\n for (int dirNum = NUMBER_POS_LIGHTS; dirNum < TOTAL_NUMBER_LIGHTS; dirNum++)\ \n {\ - \n vertLightDirection = in_lightDirection[dirNum];\ + \n vertLightDirection = in_lightDirection[dirNum];") + + (volumetricShadow ? std::string("\ + \n tex_light = g_eyeToTexture * vec4(-vertLightDirection, 0.0);\ + \n if(tex_light.w > 0.0) tex_light /= tex_light.w;") + : std::string()) + + volumetricCall + std::string("\ \n float nDotL = dot(normal, vertLightDirection);\ \n if (nDotL < 0.0 && in_twoSidedLighting)\ \n {\ @@ -1312,7 +1355,8 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n }\ \n if (nDotL > 0.0)\ \n {\ - \n float df = max(0.0, nDotL);\ + \n float df = max(0.0, ") + + (volumetricShadow ? std::string("vol_shadow * ") : std::string()) + std::string(" nDotL);\ \n diffuse += (df * in_lightDiffuseColor[dirNum]);\ \n vec3 r = normalize(2.0 * nDotL * normal - vertLightDirection);\ \n float rDotV = dot(-viewDirection, r);\ @@ -1322,7 +1366,9 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n }\ \n if (rDotV > 0.0)\ \n {\ - \n float sf = pow(rDotV, in_shininess[component]);\ + \n float sf = ") + + (volumetricShadow ? std::string("vol_shadow * ") : std::string()) + + std::string(" pow(rDotV, in_shininess[component]);\ \n specular += (sf * in_lightSpecularColor[dirNum]);\ \n }\ \n }\ @@ -2040,6 +2086,107 @@ std::string ComputeOpacity2DDeclaration(vtkRenderer* vtkNotUsed(ren), return toString.str(); } +//-------------------------------------------------------------------------- +std::string ComputeVolumetricShadowDec(vtkOpenGLGPUVolumeRayCastMapper* mapper, + vtkVolume* vtkNotUsed(vol), int noOfComponents, int independentComponents, + vtkOpenGLGPUVolumeRayCastMapper::VolumeInputMap& inputs, int useGradYAxis) +{ + std::string resStr; + std::string declarations; + std::string functionSignature; + std::string opacityEval; + std::string rayInit; + + const size_t numInputs = inputs.size(); + const bool hasGradOp = ::HasGradientOpacity(inputs); + + // for now, shadow is mono-chromatic (we only sample opacity) + // it could be RGB + + functionSignature = "float volumeShadow(vec3 sample_position, vec3 light_pos_dir, float is_Pos, " + " in int c, in sampler3D volume, " + + (numInputs > 1 ? std::string("in sampler2D opacityTF, ") : std::string()) + + (numInputs > 1 && hasGradOp ? std::string("in sampler2D gradTF, ") : std::string()) + + "int index, float label)\n"; + + declarations += + R"***( + float shadow = 1.0; + vec3 direction = vec3(0.0); + vec3 norm_dir = vec3(0.0); + float maxdist = 0.0; + float scalar; + vec4 gradient; + float opacity = 0.0; + Ray ray; + Hit hit; + float sampled_dist = 0.0; + vec3 sampled_point = vec3(0.0); + )***"; + + rayInit += + R"***( + // direction is light_pos_dir when light is directional + // and light_pos_dir - sample_position when positional + direction = light_pos_dir - is_Pos * sample_position; + norm_dir = normalize(direction); + // introduce little offset to avoid sampling shadows at the exact + // sample position + sample_position += g_lengthStep * norm_dir; + direction = light_pos_dir - is_Pos * sample_position; + ray.origin = sample_position; + ray.dir = norm_dir; + safe_0_vector(ray); + ray.invDir = 1.0/ray.dir; + if(!BBoxIntersect(vec3(0.0), vec3(1.0), ray, hit)) + { + // it can happen around the bounding box + return 1.0; + } + if(hit.tmax < g_lengthStep) + { + // if we're too close to the bounding box + return 1.0; + } + // in case of directional light, we want direction not to be normalized but to go + // all the way to the bbox + direction *= pow(hit.tmax / length(direction), 1.0 - is_Pos); + maxdist = min(hit.tmax, length(direction)); + maxdist = min(in_giReach, maxdist); + if(maxdist < EPSILON) return 1.0; + + )***"; + + // slight imprecision for the last sample : it can be something else (less) than g_lengthStep + // because the last step is clamped to the end of the ray + opacityEval += " scalar = texture3D(volume, sampled_point)[c];\n" + " scalar = scalar * in_volume_scale[index][c] + in_volume_bias[index][c];\n"; + opacityEval += ComputeOpacityEvaluationCall( + mapper, inputs, noOfComponents, independentComponents, useGradYAxis, "sampled_point"); + + resStr += functionSignature + "{\n" + declarations + rayInit + + R"***( + float current_dist = 0.0; + float current_step = g_lengthStep; + float clamped_step = 0.0; + while(current_dist < maxdist) + { + clamped_step = min(maxdist - current_dist, current_step); + sampled_dist = current_dist + clamped_step * g_jitterValue; + sampled_point = sample_position + sampled_dist * norm_dir; + )***" + + opacityEval + + R"***( + shadow *= 1.0 - opacity; + current_dist += current_step; + } + return shadow; +} + )***"; + + return resStr; +} + //-------------------------------------------------------------------------- std::string ShadingDeclarationVertex( vtkRenderer* vtkNotUsed(ren), vtkVolumeMapper* vtkNotUsed(mapper), vtkVolume* vtkNotUsed(vol)) -- GitLab From a6d9aed31187defe0d819d44e91c89d31ee562a6 Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Fri, 20 May 2022 09:48:02 +0200 Subject: [PATCH 0258/1015] Add volumetric shadows test file --- Rendering/Volume/Testing/Cxx/CMakeLists.txt | 1 + .../Volume/Testing/Cxx/TestGPURayCastMapperShadows.cxx | 7 ++----- .../Data/Baseline/TestGPURayCastMapperShadows.png.sha512 | 1 + Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h | 3 ++- 4 files changed, 6 insertions(+), 6 deletions(-) create mode 100644 Rendering/Volume/Testing/Data/Baseline/TestGPURayCastMapperShadows.png.sha512 diff --git a/Rendering/Volume/Testing/Cxx/CMakeLists.txt b/Rendering/Volume/Testing/Cxx/CMakeLists.txt index 36e9c6487a58..688587a7aa28 100644 --- a/Rendering/Volume/Testing/Cxx/CMakeLists.txt +++ b/Rendering/Volume/Testing/Cxx/CMakeLists.txt @@ -79,6 +79,7 @@ set (VolumeCxxTests TestGPURayCastVolumeUpdate.cxx TestGPUVolumeRayCastMapper.cxx TestGPUVolumeRayCastMapperManyLights.cxx + TestGPURayCastMapperShadows.cxx TestMinIntensityRendering.cxx TestMultiBlockMapper.cxx TestMultiBlockMapperRectilinearGrid.cxx diff --git a/Rendering/Volume/Testing/Cxx/TestGPURayCastMapperShadows.cxx b/Rendering/Volume/Testing/Cxx/TestGPURayCastMapperShadows.cxx index 3c0a92a03375..728769bafa74 100644 --- a/Rendering/Volume/Testing/Cxx/TestGPURayCastMapperShadows.cxx +++ b/Rendering/Volume/Testing/Cxx/TestGPURayCastMapperShadows.cxx @@ -55,11 +55,8 @@ static inline void coordsToIdx(double coords[3], double spacing[3], double origi { for (int s = 0; s < 3; s++) { - res[s] = (int)ceil((coords[s] - origin[s]) / spacing[s]); - if (res[s] < 0) - { - res[s] = 0; - } + res[s] = static_cast(ceil((coords[s] - origin[s]) / spacing[s])); + res[s] = std::max(res[s], 0); } } diff --git a/Rendering/Volume/Testing/Data/Baseline/TestGPURayCastMapperShadows.png.sha512 b/Rendering/Volume/Testing/Data/Baseline/TestGPURayCastMapperShadows.png.sha512 new file mode 100644 index 000000000000..df969d8ae6f1 --- /dev/null +++ b/Rendering/Volume/Testing/Data/Baseline/TestGPURayCastMapperShadows.png.sha512 @@ -0,0 +1 @@ +cc4574ab81a4c4dbfa2405f4f6a07e9c2ccba41597c8b86f15099e9e3362db85cff867c58c2be2f23807db6ddc7386b1f446decea3013cf07a46343bb715c34b diff --git a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h index d02abdfd3060..82bcb4359dc1 100644 --- a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h +++ b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h @@ -232,7 +232,8 @@ std::string BaseDeclarationFragment(vtkRenderer* vtkNotUsed(ren), vtkVolumeMappe " in_inverseVolumeMatrix[0] * in_inverseModelViewMatrix;\n"; } - if (inputs[0].Volume->GetProperty()->GetShade() && !defaultLighting && totalNumberOfLights > 0) + if (inputs[0].Volume->GetProperty() && inputs[0].Volume->GetProperty()->GetShade() && + !defaultLighting && totalNumberOfLights > 0) { toShaderStr << "mat4 g_texToView = in_modelViewMatrix * in_volumeMatrix[0] *" "in_textureDatasetMatrix[0];\n"; -- GitLab From 9f9ba8aac963011ccdbd2578aa11831b72cb1105 Mon Sep 17 00:00:00 2001 From: Caitlin Ross Date: Tue, 5 Apr 2022 12:44:56 -0400 Subject: [PATCH 0259/1015] vtkFidesReader: support adios inline engine --- IO/Fides/vtkFidesReader.cxx | 51 +++++++++++++++++++++++++++++++------ IO/Fides/vtkFidesReader.h | 8 ++++++ 2 files changed, 51 insertions(+), 8 deletions(-) diff --git a/IO/Fides/vtkFidesReader.cxx b/IO/Fides/vtkFidesReader.cxx index 3b4d5d76503f..a3ced3d7c469 100644 --- a/IO/Fides/vtkFidesReader.cxx +++ b/IO/Fides/vtkFidesReader.cxx @@ -37,6 +37,7 @@ #include #include +#include vtkInformationKeyMacro(vtkFidesReader, NUMBER_OF_BLOCKS, Integer); @@ -49,10 +50,12 @@ struct vtkFidesReader::vtkFidesReaderImpl bool HasParsedDataModel{ false }; bool AllDataSourcesSet{ false }; bool UsePresetModel{ false }; - bool HasReadMetadata{ false }; int NumberOfDataSources{ 0 }; vtkNew SourceNames; + // first -> source name, second -> address of IO object + std::pair IOObjectInfo; + vtkStringArray* GetDataSourceNames() { if (this->Reader && this->SourceNames->GetNumberOfValues() == 0) @@ -74,6 +77,20 @@ struct vtkFidesReader::vtkFidesReaderImpl this->NumberOfDataSources = names.size(); } } + + void SetupInlineEngine() + { + if (this->IOObjectInfo.first.empty() || this->IOObjectInfo.second.empty()) + { + return; + } + + // params has to be set before setting data source + fides::DataSourceParams params; + params["engine_type"] = "Inline"; + this->Reader->SetDataSourceParameters(this->IOObjectInfo.first, params); + this->Reader->SetDataSourceIO(this->IOObjectInfo.first, this->IOObjectInfo.second); + } }; vtkFidesReader::vtkFidesReader() @@ -128,11 +145,20 @@ void vtkFidesReader::SetFileName(const std::string& fname) } } +void vtkFidesReader::SetDataSourceIO(const std::string& name, const std::string& ioAddress) +{ + // can't call SetDataSourceIO in Fides yet, so just save the address for now + this->Impl->IOObjectInfo = std::make_pair(name, ioAddress); + this->StreamSteps = true; + this->Modified(); +} + // This version is used when a json file with the data model is provided void vtkFidesReader::ParseDataModel(const std::string& fname) { this->Impl->Reader.reset(new fides::io::DataSetReader(fname)); this->Impl->HasParsedDataModel = true; + this->Impl->SetupInlineEngine(); } // This version is used when a pre-defined data model is being used @@ -141,6 +167,7 @@ void vtkFidesReader::ParseDataModel() this->Impl->Reader.reset( new fides::io::DataSetReader(this->FileName, fides::io::DataSetReader::DataModelInput::BPFile)); this->Impl->HasParsedDataModel = true; + this->Impl->SetupInlineEngine(); } void vtkFidesReader::SetDataSourcePath(const std::string& name, const std::string& path) @@ -149,6 +176,7 @@ void vtkFidesReader::SetDataSourcePath(const std::string& name, const std::strin { this->Impl->SetNumberOfDataSources(); } + vtkDebugMacro(<< "Number of data sources: " << this->Impl->NumberOfDataSources); vtkDebugMacro(<< "source " << name << "'s path is " << path); this->Impl->Paths[name] = path; this->Modified(); @@ -169,7 +197,6 @@ void vtkFidesReader::PrintSelf(ostream& os, vtkIndent indent) os << indent << "Use Preset model: " << this->Impl->UsePresetModel << "\n"; os << indent << "Has parsed data model: " << this->Impl->HasParsedDataModel << "\n"; os << indent << "All data sources set: " << this->Impl->AllDataSourcesSet << "\n"; - os << indent << "Has read metadata: " << this->Impl->HasReadMetadata << "\n"; os << indent << "Number of data sources: " << this->Impl->NumberOfDataSources << "\n"; } @@ -215,6 +242,15 @@ int vtkFidesReader::RequestInformation( vtkInformation*, vtkInformationVector**, vtkInformationVector* outputVector) { vtkInformation* outInfo = outputVector->GetInformationObject(0); + if (this->Impl->NumberOfDataSources == 0) + { + this->Impl->SetNumberOfDataSources(); + if (this->Impl->Paths.size() == static_cast(this->Impl->NumberOfDataSources)) + { + vtkDebugMacro(<< "All data sources have now been set"); + this->Impl->AllDataSourcesSet = true; + } + } // If we're using a preset model, we'll have to do the call to ParseDataModel here if (this->Impl->UsePresetModel && !this->Impl->HasParsedDataModel) @@ -252,16 +288,13 @@ int vtkFidesReader::RequestInformation( return 1; } - if (this->Impl->HasReadMetadata) - { - return 1; - } auto metaData = this->Impl->Reader->ReadMetaData(this->Impl->Paths); - this->Impl->HasReadMetadata = true; vtkDebugMacro(<< "MetaData has been read by Fides"); auto nBlocks = metaData.Get(fides::keys::NUMBER_OF_BLOCKS()); outInfo->Set(NUMBER_OF_BLOCKS(), nBlocks.NumberOfItems); + vtkDebugMacro(<< "Number of blocks found in metadata: " << nBlocks.NumberOfItems); + outInfo->Set(vtkAlgorithm::CAN_HANDLE_PIECE_REQUEST(), 1); if (metaData.Has(fides::keys::FIELDS())) { @@ -336,7 +369,7 @@ fides::metadata::Vector DetermineBlocksToRead(int nBlocks, int nPieces, else { startPiece = nBlocks - 1; - endPiece = startPiece; + endPiece = startPiece + 1; } } @@ -417,6 +450,7 @@ int vtkFidesReader::RequestData( int nPieces = outInfo->Get(vtkStreamingDemandDrivenPipeline::UPDATE_NUMBER_OF_PIECES()); int piece = outInfo->Get(vtkStreamingDemandDrivenPipeline::UPDATE_PIECE_NUMBER()); + vtkDebugMacro(<< "nBlocks: " << nBlocks << ", nPieces: " << nPieces << ", piece: " << piece); fides::metadata::Vector blocksToRead = DetermineBlocksToRead(nBlocks, nPieces, piece); @@ -425,6 +459,7 @@ int vtkFidesReader::RequestData( { // nothing to read on this rank output->SetNumberOfPartitions(0); + vtkDebugMacro(<< "No blocks to read on this rank; returning"); return 1; } selections.Set(fides::keys::BLOCK_SELECTION(), blocksToRead); diff --git a/IO/Fides/vtkFidesReader.h b/IO/Fides/vtkFidesReader.h index fd570270a683..ba0107fd628f 100644 --- a/IO/Fides/vtkFidesReader.h +++ b/IO/Fides/vtkFidesReader.h @@ -92,6 +92,14 @@ public: */ void SetDataSourcePath(const std::string& name, VTK_FILEPATH const std::string& path); + /** + * Set the ADIOS2::IO object to be used for setting up the Inline engine reader. + * This should not be used for any other engine type. + * ioAddress is a string containing the address of the IO object, which Fides + * will cast to a IO pointer. + */ + void SetDataSourceIO(const std::string& name, const std::string& ioAddress); + /** * Implements various pipeline passes. */ -- GitLab From 7aec7de2df518d7274ad2af19bb0648925969df9 Mon Sep 17 00:00:00 2001 From: Caitlin Ross Date: Thu, 28 Apr 2022 15:19:01 -0500 Subject: [PATCH 0260/1015] vtkFidesReader: enable grabbing time array from ADIOS --- IO/Fides/vtkFidesReader.cxx | 56 +++++++++++++++++++++++++++++++++---- IO/Fides/vtkFidesReader.h | 6 ++++ 2 files changed, 56 insertions(+), 6 deletions(-) diff --git a/IO/Fides/vtkFidesReader.cxx b/IO/Fides/vtkFidesReader.cxx index a3ced3d7c469..986e818fbd35 100644 --- a/IO/Fides/vtkFidesReader.cxx +++ b/IO/Fides/vtkFidesReader.cxx @@ -316,18 +316,28 @@ int vtkFidesReader::RequestInformation( if (!this->StreamSteps && metaData.Has(fides::keys::NUMBER_OF_STEPS())) { - vtkDebugMacro(<< "We are not streaming steps and metadata contains number of steps info"); - size_t nSteps = - metaData.Get(fides::keys::NUMBER_OF_STEPS()).NumberOfItems; + // If there's a time array provided, we'll use that, otherwise, just create an array + // with consecutive integers for the time + std::vector times; + int nSteps; + if (metaData.Has(fides::keys::TIME_ARRAY())) + { + times = metaData.Get>(fides::keys::TIME_ARRAY()).Data; + nSteps = static_cast(times.size()); + } + else + { + nSteps = metaData.Get(fides::keys::NUMBER_OF_STEPS()).NumberOfItems; - std::vector times(nSteps); - std::iota(times.begin(), times.end(), 0); + times.resize(nSteps); + std::iota(times.begin(), times.end(), 0); + } double timeRange[2]; timeRange[0] = times[0]; timeRange[1] = times[nSteps - 1]; - outInfo->Set(vtkStreamingDemandDrivenPipeline::TIME_STEPS(), ×[0], (int)nSteps); + outInfo->Set(vtkStreamingDemandDrivenPipeline::TIME_STEPS(), ×[0], nSteps); outInfo->Set(vtkStreamingDemandDrivenPipeline::TIME_RANGE(), timeRange, 2); } @@ -435,6 +445,40 @@ int vtkFidesReader::GetNextStepStatus() return this->NextStepStatus; } +double vtkFidesReader::GetTimeOfCurrentStep() +{ + if (!this->StreamSteps) + { + vtkErrorMacro("GetTimeOfCurrentStep() can only be called in streaming mode"); + return 0.0; + } + + if (this->Impl->NumberOfDataSources == 0) + { + this->Impl->SetNumberOfDataSources(); + if (this->Impl->Paths.size() == static_cast(this->Impl->NumberOfDataSources)) + { + vtkDebugMacro(<< "All data sources have now been set"); + this->Impl->AllDataSourcesSet = true; + } + } + + if (!this->Impl->HasParsedDataModel || !this->Impl->AllDataSourcesSet) + { + vtkErrorMacro(<< "data model has not been parsed or all data sources have not been set"); + return 0.0; + } + + auto metaData = this->Impl->Reader->ReadMetaData(this->Impl->Paths); + if (metaData.Has(fides::keys::TIME_VALUE())) + { + return metaData.Get(fides::keys::TIME_VALUE()).Data; + } + + vtkErrorMacro(<< "Couldn't grab the time from the Fides metadata"); + return 0.0; +} + int vtkFidesReader::RequestData( vtkInformation*, vtkInformationVector**, vtkInformationVector* outputVector) { diff --git a/IO/Fides/vtkFidesReader.h b/IO/Fides/vtkFidesReader.h index ba0107fd628f..4fc8ee4265da 100644 --- a/IO/Fides/vtkFidesReader.h +++ b/IO/Fides/vtkFidesReader.h @@ -122,6 +122,12 @@ public: */ int GetNextStepStatus(); + /** + * Gets the time (from the specified ADIOS variable) of the current step. + * Should only be used in streaming mode. + */ + double GetTimeOfCurrentStep(); + ///@{ /** * Methods to determine whether to output a set of vtkmDataSets -- GitLab From 282dcb4d8d1f5923b51b3873cdcd649a10840f3e Mon Sep 17 00:00:00 2001 From: Caitlin Ross Date: Wed, 18 May 2022 11:31:21 -0500 Subject: [PATCH 0261/1015] vtkFidesReader: release note --- Documentation/release/dev/fides-support-inline-engine.md | 3 +++ 1 file changed, 3 insertions(+) create mode 100644 Documentation/release/dev/fides-support-inline-engine.md diff --git a/Documentation/release/dev/fides-support-inline-engine.md b/Documentation/release/dev/fides-support-inline-engine.md new file mode 100644 index 000000000000..0552aeb0f5d1 --- /dev/null +++ b/Documentation/release/dev/fides-support-inline-engine.md @@ -0,0 +1,3 @@ +## Support ADIOS Inline engine in Fides reader + +The vtkFidesReader can now use the Inline engine for in situ processing. -- GitLab From 7349e2e220a28249389b787a711d2ac78814291b Mon Sep 17 00:00:00 2001 From: Caitlin Ross Date: Wed, 18 May 2022 11:15:34 -0500 Subject: [PATCH 0262/1015] fides: update tag --- ThirdParty/fides/update.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ThirdParty/fides/update.sh b/ThirdParty/fides/update.sh index d0b1d2e97aae..666c653786f5 100755 --- a/ThirdParty/fides/update.sh +++ b/ThirdParty/fides/update.sh @@ -8,7 +8,7 @@ readonly name="fides" readonly ownership="Fides Upstream " readonly subtree="ThirdParty/$name/vtk$name" readonly repo="https://gitlab.kitware.com/third-party/fides.git" -readonly tag="for/vtk-20220104-master-6512844" +readonly tag="for/vtk-20220524-master-9fb7b15" readonly paths=" .gitattributes LICENSE.txt -- GitLab From ffda895ab7548e8d483ad52c7adb61143d4ca653 Mon Sep 17 00:00:00 2001 From: Fides Upstream Date: Tue, 24 May 2022 11:31:18 -0500 Subject: [PATCH 0263/1015] fides 2022-05-24 (e4894a91) Code extracted from: https://gitlab.kitware.com/third-party/fides.git at commit e4894a91d8756a73a9c34481314e603b71290571 (for/vtk-20220524-master-9fb7b15). --- fides/CellSet.cxx | 72 +++++++++++--------- fides/CellSet.h | 1 + fides/CoordinateSystem.cxx | 9 ++- fides/DataSetReader.cxx | 86 ++++++++++++++++++++++++ fides/DataSetReader.h | 7 ++ fides/DataSource.cxx | 79 +++++++++++++++++++--- fides/DataSource.h | 10 +++ fides/Keys.cxx | 15 +++++ fides/Keys.h | 15 +++++ fides/MetaData.h | 13 ++++ fides/predefined/PredefinedDataModel.cxx | 8 +++ 11 files changed, 270 insertions(+), 45 deletions(-) diff --git a/fides/CellSet.cxx b/fides/CellSet.cxx index 561665a6e77a..bdb7ea3733d6 100644 --- a/fides/CellSet.cxx +++ b/fides/CellSet.cxx @@ -667,6 +667,9 @@ void CellSetGTC::PostRead(std::vector& partitions, addR = selections.Get(fides::keys::fusion::ADD_R_FIELD()).Value; if (selections.Has(fides::keys::fusion::ADD_PHI_FIELD())) addPhi = selections.Get(fides::keys::fusion::ADD_PHI_FIELD()).Value; + if (selections.Has(fides::keys::fusion::FUSION_PERIODIC_CELLSET())) + this->PeriodicCellSet = + selections.Get(fides::keys::fusion::FUSION_PERIODIC_CELLSET()).Value; auto& dataSet = partitions[0]; if (this->IsCached) @@ -846,43 +849,46 @@ std::vector CellSetGTC::ComputeConnectivity( } } - //Connect the first/last plane. - //Uses index-shift to map between flux surfaces. - auto indexShiftPortal = indexShift.ReadPortal(); - std::vector pn(this->NumberOfPointsPerPlane, -1); - vtkm::Id n = igridPortal.GetNumberOfValues(); - for (vtkm::Id gi = 0; gi < n - 1; gi++) + if (this->PeriodicCellSet) { - vtkm::Id n0 = igridPortal.Get(gi); - vtkm::Id nn = igridPortal.Get(gi + 1) - 1; - vtkm::Id shift = static_cast(indexShiftPortal.Get(gi)); - - for (vtkm::Id i = 0; i < (nn - n0); i++) + //Connect the first/last plane. + //Uses index-shift to map between flux surfaces. + auto indexShiftPortal = indexShift.ReadPortal(); + std::vector pn(this->NumberOfPointsPerPlane, -1); + vtkm::Id n = igridPortal.GetNumberOfValues(); + for (vtkm::Id gi = 0; gi < n - 1; gi++) { - vtkm::Id i0 = i; - vtkm::Id i1 = i - shift; - if (i1 < 0) - i1 = i1 + (nn - n0); - pn[n0 + i0] = n0 + i1; - } - } - - vtkm::Id offset = nNodes * (this->NumberOfPlanes - 1); - for (vtkm::Id i = 0; i < nElements; i++) - { - vtkm::Id ids[3] = { connIds[i * 6 + 0], connIds[i * 6 + 1], connIds[i * 6 + 2] }; - if (!(ids[0] < nNodes && ids[1] < nNodes && ids[2] < nNodes)) - throw std::runtime_error("Invalid connectivity for GTC Cellset."); + vtkm::Id n0 = igridPortal.Get(gi); + vtkm::Id nn = igridPortal.Get(gi + 1) - 1; + vtkm::Id shift = static_cast(indexShiftPortal.Get(gi)); - //plane N-1 - connIds.push_back(pn[ids[0]] + offset); - connIds.push_back(pn[ids[1]] + offset); - connIds.push_back(pn[ids[2]] + offset); + for (vtkm::Id i = 0; i < (nn - n0); i++) + { + vtkm::Id i0 = i; + vtkm::Id i1 = i - shift; + if (i1 < 0) + i1 = i1 + (nn - n0); + pn[n0 + i0] = n0 + i1; + } + } - //plane 0 - connIds.push_back(ids[0]); - connIds.push_back(ids[1]); - connIds.push_back(ids[2]); + vtkm::Id offset = nNodes * (this->NumberOfPlanes - 1); + for (vtkm::Id i = 0; i < nElements; i++) + { + vtkm::Id ids[3] = { connIds[i * 6 + 0], connIds[i * 6 + 1], connIds[i * 6 + 2] }; + if (!(ids[0] < nNodes && ids[1] < nNodes && ids[2] < nNodes)) + throw std::runtime_error("Invalid connectivity for GTC Cellset."); + + //plane N-1 + connIds.push_back(pn[ids[0]] + offset); + connIds.push_back(pn[ids[1]] + offset); + connIds.push_back(pn[ids[2]] + offset); + + //plane 0 + connIds.push_back(ids[0]); + connIds.push_back(ids[1]); + connIds.push_back(ids[2]); + } } return connIds; diff --git a/fides/CellSet.h b/fides/CellSet.h index 256eed7b9daf..4a75d89d249f 100644 --- a/fides/CellSet.h +++ b/fides/CellSet.h @@ -254,6 +254,7 @@ private: bool PhiArrayCached = false; vtkm::cont::ArrayHandle RArray; vtkm::cont::ArrayHandle PhiArray; + bool PeriodicCellSet = true; }; } diff --git a/fides/CoordinateSystem.cxx b/fides/CoordinateSystem.cxx index ae02bc3ded36..8c6098d5836f 100644 --- a/fides/CoordinateSystem.cxx +++ b/fides/CoordinateSystem.cxx @@ -31,8 +31,13 @@ size_t CoordinateSystem::GetNumberOfBlocks( const std::unordered_map& paths, DataSourcesType& sources) { - // blocks can change per timestep - this->NumberOfBlocks = this->Array->GetNumberOfBlocks(paths, sources); + // blocks can change per timestep, but it's also possible that the + // mesh is written once, so we have to handle both situations + auto nBlocks = this->Array->GetNumberOfBlocks(paths, sources); + if (nBlocks > 0) + { + this->NumberOfBlocks = nBlocks; + } return this->NumberOfBlocks; } diff --git a/fides/DataSetReader.cxx b/fides/DataSetReader.cxx index 8173efaae6de..a230217f93e4 100644 --- a/fides/DataSetReader.cxx +++ b/fides/DataSetReader.cxx @@ -135,6 +135,17 @@ public: ds.SetDataSourceIO(io); } + void SetDataSourceIO(const std::string source, const std::string& io) + { + auto it = this->DataSources.find(source); + if (it == this->DataSources.end()) + { + throw std::runtime_error("Source name was not found in DataSources."); + } + auto& ds = *(it->second); + ds.SetDataSourceIO(io); + } + template void ProcessDataSources(const ValueType& dataSources) { @@ -254,6 +265,10 @@ public: throw std::runtime_error("step_information needs a data_source."); } this->StepSource = sInf["data_source"].GetString(); + if (sInf.HasMember("variable")) + { + this->TimeVariable = sInf["variable"].GetString(); + } } template @@ -435,6 +450,15 @@ public: } } + struct GetTimeValueFunctor + { + template + VTKM_CONT void operator()(const vtkm::cont::ArrayHandle& array, double& time) const + { + time = static_cast(array.ReadPortal().Get(0)); + } + }; + fides::metadata::MetaData ReadMetaData(const std::unordered_map& paths) { if (!this->CoordinateSystem) @@ -466,6 +490,62 @@ public: fides::metadata::Size nStepsM(nSteps); metaData.Set(fides::keys::NUMBER_OF_STEPS(), nStepsM); } + + auto it = this->DataSources.find(this->StepSource); + if (it != this->DataSources.end()) + { + auto ds = it->second; + auto itr = paths.find(this->StepSource); + if (itr == paths.end()) + { + throw std::runtime_error("Could not find data_source with name " + this->StepSource + + " among the input paths."); + } + std::string path = itr->second + ds->FileName; + ds->OpenSource(path); + + // StreamingMode only gets set on the first PrepareNextStep, but + // for streaming PrepareNextStep has to be called before ReadMetaData anyway + if (this->StreamingMode) + { + auto timeVec = ds->GetScalarVariable(this->TimeVariable, metadata::MetaData()); + if (!timeVec.empty()) + { + auto& timeAH = timeVec[0]; + if (timeAH.GetNumberOfValues() == 1) + { + double timeVal; + timeAH.CastAndCallForTypes>( + GetTimeValueFunctor(), timeVal); + fides::metadata::Time time(timeVal); + metaData.Set(fides::keys::TIME_VALUE(), time); + } + } + } + else + { + auto timeVec = ds->GetTimeArray(this->TimeVariable, metadata::MetaData()); + if (!timeVec.empty()) + { + auto& timeAH = timeVec[0]; + if (!timeAH.CanConvert>()) + { + std::runtime_error("can't convert time array to double"); + } + vtkm::cont::ArrayHandle timeCasted = + timeAH.AsArrayHandle>(); + + auto timePortal = timeCasted.ReadPortal(); + fides::metadata::Vector time; + time.Data.resize(timePortal.GetNumberOfValues()); + vtkm::cont::ArrayPortalToIterators iterators(timePortal); + std::copy(iterators.GetBegin(), iterators.GetEnd(), time.Data.begin()); + metaData.Set(fides::keys::TIME_ARRAY(), time); + } + } + } + return metaData; } @@ -541,6 +621,7 @@ public: using FieldsKeyType = std::pair; std::map> Fields; std::string StepSource; + std::string TimeVariable; bool StreamingMode = false; }; @@ -745,6 +826,11 @@ void DataSetReader::SetDataSourceIO(const std::string source, void* io) this->Impl->SetDataSourceIO(source, io); } +void DataSetReader::SetDataSourceIO(const std::string source, const std::string& io) +{ + this->Impl->SetDataSourceIO(source, io); +} + FIDES_DEPRECATED_SUPPRESS_BEGIN std::shared_ptr DataSetReader::GetFieldData() { diff --git a/fides/DataSetReader.h b/fides/DataSetReader.h index dc9d87af1923..bcf944f4b4c7 100644 --- a/fides/DataSetReader.h +++ b/fides/DataSetReader.h @@ -90,6 +90,13 @@ public: /// \param io pointer to the ADIOS IO object void SetDataSourceIO(const std::string source, void* io); + /// Set the IO for a given \c source. This call should only be used when + /// using the inline engine and must be called before attempting to read data or metadata. + /// \param source name of the \c DataSource, which should match a data_sources + /// name given in the data model JSON. + /// \param io the address to an ADIOS IO object, stored in a string + void SetDataSourceIO(const std::string source, const std::string& io); + /// Read and return meta-data. This includes information such as the /// number of blocks, available fields etc. /// \param paths a map that provides diff --git a/fides/DataSource.cxx b/fides/DataSource.cxx index 0adc39ae1704..1df6eb0d7960 100644 --- a/fides/DataSource.cxx +++ b/fides/DataSource.cxx @@ -56,6 +56,14 @@ void DataSource::SetDataSourceIO(void* io) this->OpenSource(this->ReaderID); } +void DataSource::SetDataSourceIO(const std::string& ioAddress) +{ + long long hexAddress = std::stoll(ioAddress, nullptr, 16); + this->AdiosIO = *(reinterpret_cast(hexAddress)); + this->SetupEngine(); + this->OpenSource(this->ReaderID); +} + void DataSource::SetupEngine() { auto it = this->SourceParams.find("engine_type"); @@ -84,15 +92,6 @@ void DataSource::SetupEngine() "a valid pointer to an adios2::IO object."); } this->AdiosIO.SetEngine("Inline"); - - it = this->SourceParams.find("writer_id"); - if (it == this->SourceParams.end()) - { - throw std::runtime_error("Inline engine requires a valid writer_id."); - } - this->AdiosIO.SetParameter("writerID", it->second); - - this->AdiosIO.SetParameter("readerID", this->ReaderID); } else { @@ -526,7 +525,33 @@ std::vector GetScalarVariableInternal( arrayHandle.Allocate(1); VariableType* buffer = arrayHandle.GetWritePointer(); valueAH = arrayHandle; - reader.Get(varADIOS2, buffer); + // because we're getting a single value, we can use sync mode here + // I think for most engines, it doesn't actually matter to specify this for + // a single value (it will still be performed in sync), + // but for Inline engine, you'll get an error if you don't specify sync mode + reader.Get(varADIOS2, buffer, adios2::Mode::Sync); + retVal.push_back(valueAH); + + return retVal; +} + +template +std::vector GetTimeArrayInternal( + adios2::IO& adiosIO, + adios2::Engine& reader, + const std::string& varName, + const fides::metadata::MetaData& fidesNotUsed(selections)) +{ + auto varADIOS2 = adiosIO.InquireVariable(varName); + auto numSteps = varADIOS2.Steps(); + varADIOS2.SetStepSelection({ varADIOS2.StepsStart(), numSteps }); + std::vector retVal; + vtkm::cont::UnknownArrayHandle valueAH; + vtkm::cont::ArrayHandleBasic arrayHandle; + arrayHandle.Allocate(numSteps); + VariableType* buffer = arrayHandle.GetWritePointer(); + valueAH = arrayHandle; + reader.Get(varADIOS2, buffer, adios2::Mode::Sync); retVal.push_back(valueAH); return retVal; @@ -704,6 +729,40 @@ std::vector DataSource::GetScalarVariable( throw std::runtime_error("Unsupported variable type " + type); } +std::vector DataSource::GetTimeArray( + const std::string& varName, + const fides::metadata::MetaData& selections) +{ + if (!this->Reader) + { + throw std::runtime_error("Cannot read variable without setting the adios engine."); + } + + if (this->AdiosEngineType != EngineType::BPFile) + { + throw std::runtime_error("A full time array can only be read when using BP files"); + } + + auto itr = this->AvailVars.find(varName); + if (itr == this->AvailVars.end()) + { + // previously we were throwing an error if the variable could not be found, + // but it's possible that a variable may just not be available on a certain timestep. + return std::vector(); + } + + const std::string& type = itr->second["Type"]; + if (type.empty()) + { + throw std::runtime_error("Variable type unavailable."); + } + + fidesTemplateMacro( + GetTimeArrayInternal(this->AdiosIO, this->Reader, varName, selections)); + + throw std::runtime_error("Unsupported variable type " + type); +} + std::vector DataSource::ReadVariable( const std::string& varName, const fides::metadata::MetaData& selections, diff --git a/fides/DataSource.h b/fides/DataSource.h index d6d14662bf3b..c200300c8d90 100644 --- a/fides/DataSource.h +++ b/fides/DataSource.h @@ -95,6 +95,12 @@ struct DataSource /// using the inline engine and must be called before attempting to read. void SetDataSourceIO(void* io); + /// Set the IO object for this data source. The \c ioAddress argument is + /// the pointer address to an ADIOS::IO object stored in a string. + /// This call is only required when + /// using the inline engine and must be called before attempting to read. + void SetDataSourceIO(const std::string& ioAddress); + /// Prepare data source for reading. This needs to be called before /// any meta-data or heavy-data operations can be performed. /// In most cases, useMPI should be true (the default value), but in some @@ -131,6 +137,10 @@ struct DataSource const std::string& varName, const fides::metadata::MetaData& selections); + std::vector GetTimeArray( + const std::string& varName, + const fides::metadata::MetaData& selections); + /// Returns the dimensions and start of an n-dimensional variable. /// The first n values are the dimensions and the last n the start. /// Unlike ReadVariable(), the values are accessible immediately. diff --git a/fides/Keys.cxx b/fides/Keys.cxx index 881ad143861a..9b9fce0990d3 100644 --- a/fides/Keys.cxx +++ b/fides/Keys.cxx @@ -39,6 +39,16 @@ KeyType STEP_SELECTION() return reinterpret_cast(&STEP_SELECTION); } +KeyType TIME_VALUE() +{ + return reinterpret_cast(&TIME_VALUE); +} + +KeyType TIME_ARRAY() +{ + return reinterpret_cast(&TIME_ARRAY); +} + KeyType PLANE_SELECTION() { return reinterpret_cast(&PLANE_SELECTION); @@ -66,6 +76,11 @@ KeyType ADD_PHI_FIELD() return reinterpret_cast(&ADD_PHI_FIELD); } +KeyType FUSION_PERIODIC_CELLSET() +{ + return reinterpret_cast(&FUSION_PERIODIC_CELLSET); +} + KeyType ADD_PSI_FIELD() { return reinterpret_cast(&ADD_PSI_FIELD); diff --git a/fides/Keys.h b/fides/Keys.h index a4709d88e94e..c2190846e390 100644 --- a/fides/Keys.h +++ b/fides/Keys.h @@ -42,6 +42,16 @@ FIDES_EXPORT KeyType FIELDS(); /// Uses fides::metadata::Index FIDES_EXPORT KeyType STEP_SELECTION(); +/// Key used for retrieving the time value of a step. +/// Should only be used when streaming. +/// Uses fides::metadata::Time +FIDES_EXPORT KeyType TIME_VALUE(); + +/// Key used for retreiving the full array of time step values. +/// Used in random access mode +/// Uses fides::metadata::Vector +FIDES_EXPORT KeyType TIME_ARRAY(); + /// Key used for selecting planes for XGC data. /// Should only be used internally. /// Uses fides::metadata::Set @@ -62,6 +72,11 @@ FIDES_EXPORT KeyType PLANE_INSERTION(); /// Uses fides::metadata::Bool FIDES_EXPORT KeyType ADD_R_FIELD(); +/// Key used for specifying that the mesh should be periodic +/// for GTC and XGC data. +/// Uses fides::metadata::Bool +FIDES_EXPORT KeyType FUSION_PERIODIC_CELLSET(); + /// Key used for specifying that the Phi field should be added. /// for GTC and XGC data. /// Uses fides::metadata::Bool diff --git a/fides/MetaData.h b/fides/MetaData.h index 3dc7a9237d67..97aefa46f6bc 100644 --- a/fides/MetaData.h +++ b/fides/MetaData.h @@ -89,6 +89,19 @@ protected: virtual Index* CloneImpl() const override { return new Index(*this); } }; +/// \brief Meta-data item to store a double time value. +struct FIDES_EXPORT Time : public MetaDataItem +{ + Time(double time) + : Data(time) + { + } + double Data; + +protected: + virtual Time* CloneImpl() const override { return new Time(*this); } +}; + /// \brief Simple struct representing field information. struct FIDES_EXPORT FieldInformation { diff --git a/fides/predefined/PredefinedDataModel.cxx b/fides/predefined/PredefinedDataModel.cxx index 381717b8ff59..e0f4e085d332 100644 --- a/fides/predefined/PredefinedDataModel.cxx +++ b/fides/predefined/PredefinedDataModel.cxx @@ -159,6 +159,7 @@ std::string GetRequiredVariableName(std::shared_ptr sour } const std::string DataModelAttrName = "Fides_Data_Model"; +const std::string TimeVariableAttrName = "Fides_Time_Variable"; const std::string OriginAttrName = "Fides_Origin"; const std::string SpacingAttrName = "Fides_Spacing"; const std::string DimensionsAttrName = "Fides_Dimensions"; @@ -276,6 +277,13 @@ void PredefinedDataModel::AddStepInformation(rapidjson::Value& parent) rapidjson::Value stepInfo(rapidjson::kObjectType); auto srcName = SetString(this->Doc.GetAllocator(), this->DataSourceName); stepInfo.AddMember("data_source", srcName, this->Doc.GetAllocator()); + + auto timeVar = GetOptionalVariableName(this->MetadataSource, TimeVariableAttrName); + if (timeVar.first) + { + auto timeStr = SetString(this->Doc.GetAllocator(), timeVar.second); + stepInfo.AddMember("variable", timeStr, this->Doc.GetAllocator()); + } parent.AddMember("step_information", stepInfo, this->Doc.GetAllocator()); } -- GitLab From 506435b60d4648bf33da9283ff636c74fead2ded Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Fri, 20 May 2022 12:57:37 -0400 Subject: [PATCH 0264/1015] vtkPointDataToCellData/vtkCellTreeLocator: Fix warnings --- Common/DataModel/vtkCellTreeLocator.cxx | 2 +- Filters/Core/vtkPointDataToCellData.cxx | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/Common/DataModel/vtkCellTreeLocator.cxx b/Common/DataModel/vtkCellTreeLocator.cxx index 353cbc34d0e2..3a3efab22990 100644 --- a/Common/DataModel/vtkCellTreeLocator.cxx +++ b/Common/DataModel/vtkCellTreeLocator.cxx @@ -70,7 +70,7 @@ struct vtkCellTree virtual void FindCellsWithinBounds(double* bbox, vtkIdList* cells) = 0; virtual int IntersectWithLine(const double a0[3], const double a1[3], double tol, double& t, double x[3], double pcoords[3], int& subId, vtkIdType& cellId, vtkGenericCell* cell) = 0; - virtual int IntersectWithLine(const double p1[3], const double p2[3], const double tol, + virtual int IntersectWithLine(const double p1[3], const double p2[3], double tol, vtkPoints* points, vtkIdList* cellIds, vtkGenericCell* cell) = 0; virtual void GenerateRepresentation(int level, vtkPolyData* pd) = 0; diff --git a/Filters/Core/vtkPointDataToCellData.cxx b/Filters/Core/vtkPointDataToCellData.cxx index ca093f7b9bc5..1f4b1748b2ef 100644 --- a/Filters/Core/vtkPointDataToCellData.cxx +++ b/Filters/Core/vtkPointDataToCellData.cxx @@ -365,8 +365,7 @@ int vtkPointDataToCellData::RequestData( vtkInformation* inInfo = inputVector[0]->GetInformationObject(0); vtkDataSet* input = vtkDataSet::SafeDownCast(inInfo->Get(vtkDataObject::DATA_OBJECT())); - vtkIdType cellId, ptId, pointId; - vtkIdType numCells, numPts; + vtkIdType numCells; vtkPointData* inputInPD = input->GetPointData(); vtkSmartPointer inPD; vtkCellData* outCD = output->GetCellData(); -- GitLab From 8955744974102811e3a4dcbf186a2a5ff1fd7a8d Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Sat, 21 May 2022 09:44:45 -0400 Subject: [PATCH 0265/1015] vtkParticleTracerBase:: Fix offsets ids --- Filters/FlowPaths/Testing/Cxx/TestStreamTracer.cxx | 2 +- Filters/FlowPaths/vtkParticleTracerBase.cxx | 7 ++++--- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/Filters/FlowPaths/Testing/Cxx/TestStreamTracer.cxx b/Filters/FlowPaths/Testing/Cxx/TestStreamTracer.cxx index f6d067c612f4..d96fcac1d689 100644 --- a/Filters/FlowPaths/Testing/Cxx/TestStreamTracer.cxx +++ b/Filters/FlowPaths/Testing/Cxx/TestStreamTracer.cxx @@ -1,7 +1,7 @@ /*========================================================================= Program: Visualization Toolkit - Module: TestParticleTracers.cxx + Module: TestStreamTracer.cxx Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen All rights reserved. diff --git a/Filters/FlowPaths/vtkParticleTracerBase.cxx b/Filters/FlowPaths/vtkParticleTracerBase.cxx index 54b82a7e679f..f12e3f5075a7 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.cxx +++ b/Filters/FlowPaths/vtkParticleTracerBase.cxx @@ -838,7 +838,7 @@ void vtkParticleTracerBase::ResizeArrays(vtkIdType numTuples) { // resize first so that if you already have data, you don't lose them this->OutputCoordinates->Resize(numTuples); - this->ParticleCellsOffsets->Resize(numTuples); + this->ParticleCellsOffsets->Resize(numTuples + 1); this->ParticleCellsConnectivity->Resize(numTuples); for (int i = 0; i < this->OutputPointData->GetNumberOfArrays(); ++i) { @@ -846,7 +846,7 @@ void vtkParticleTracerBase::ResizeArrays(vtkIdType numTuples) } // set number number of tuples because resize does not do that this->OutputCoordinates->SetNumberOfPoints(numTuples); - this->ParticleCellsOffsets->SetNumberOfValues(numTuples); + this->ParticleCellsOffsets->SetNumberOfValues(numTuples + 1); this->ParticleCellsConnectivity->SetNumberOfValues(numTuples); this->OutputPointData->SetNumberOfTuples(numTuples); } @@ -882,6 +882,7 @@ vtkPolyData* vtkParticleTracerBase::Execute(vtkInformationVector** inputVector) vtkDebugMacro(<< "About to allocate arrays "); this->OutputCoordinates = vtkSmartPointer::New(); this->ParticleCellsOffsets = vtkSmartPointer::New(); + this->ParticleCellsOffsets->InsertNextValue(0); this->ParticleCellsConnectivity = vtkSmartPointer::New(); this->ParticleCells = vtkSmartPointer::New(); @@ -1676,7 +1677,7 @@ void vtkParticleTracerBase::SetParticle(vtkParticleTracerBaseNamespace::Particle const double* coord = info.CurrentPosition.x; this->OutputCoordinates->SetPoint(particleId, coord); // create the cell - this->ParticleCellsOffsets->SetValue(particleId, particleId + 1); + this->ParticleCellsOffsets->SetValue(particleId + 1, particleId + 1); this->ParticleCellsConnectivity->SetValue(particleId, particleId); // set the easy scalars for this particle this->ParticleIds->SetValue(particleId, info.UniqueParticleId); -- GitLab From f7230f23523e152a105d66fd3bd6271dad6069f9 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Sat, 21 May 2022 10:06:00 -0400 Subject: [PATCH 0266/1015] vtkLinearTransformCellLocator: Fix documentation --- Common/DataModel/vtkLinearTransformCellLocator.h | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Common/DataModel/vtkLinearTransformCellLocator.h b/Common/DataModel/vtkLinearTransformCellLocator.h index 78b3e4ba2cc6..4f82adff6c78 100644 --- a/Common/DataModel/vtkLinearTransformCellLocator.h +++ b/Common/DataModel/vtkLinearTransformCellLocator.h @@ -21,15 +21,15 @@ * vtkStaticCellLocator, vtkCellLocator, calculate the transformation matrix from the cell * locator adaptor's dataset to the given dataset inside BuildLocator, and then use the cell locator * and transformation to perform cell locator operations. The transformation matrix is computed - * using the https://en.wikipedia.org/wiki/Kabsch_algorithm. UseAllPoints allows to compute the - * transformation using all the points of the dataset (use that when you are not if it's a linear - * transformation) or 100 sample points (or less if the dataset is smaller) that are chosen + * using the https://en.wikipedia.org/wiki/Kabsch_algorithm. UseAllPoints allows you to compute the + * transformation using all the points of the dataset (use that when you are not sure if it's a + * linear transformation) or 100 sample points (or less if the dataset is smaller) that are chosen * every-nth. IsLinearTransformation validates if the dataset is a linear transformation of the cell * locator's dataset based on the used points. * * @warning The cell locator adaptor MUST be built before using it. * - * vtkCellTreeLocator does NOT utilize ANY vtkLocator/vtkAbstractCellLocator parameter: + * vtkLinearTransformCellLocator does NOT utilize ANY vtkLocator/vtkAbstractCellLocator parameter: * * @sa * vtkAbstractCellLocator vtkCellLocator vtkStaticCellLocator vtkCellTreeLocator vtkModifiedBSPTree -- GitLab From b78324f5fd084599ea4e32ad523e6e9e13512eb8 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 23 May 2022 11:28:33 -0400 Subject: [PATCH 0267/1015] vtkAbstractCellLocator: Add ComputeCellBounds --- Common/DataModel/vtkAbstractCellLocator.cxx | 10 ++++++++++ Common/DataModel/vtkAbstractCellLocator.h | 6 ++++++ Common/DataModel/vtkCellLocator.cxx | 6 +----- Common/DataModel/vtkCellTreeLocator.cxx | 6 +----- Filters/FlowPaths/vtkModifiedBSPTree.cxx | 6 +----- 5 files changed, 19 insertions(+), 15 deletions(-) diff --git a/Common/DataModel/vtkAbstractCellLocator.cxx b/Common/DataModel/vtkAbstractCellLocator.cxx index 72b3398fd84e..7d10a5be8ec0 100644 --- a/Common/DataModel/vtkAbstractCellLocator.cxx +++ b/Common/DataModel/vtkAbstractCellLocator.cxx @@ -79,6 +79,16 @@ void vtkAbstractCellLocator::FreeCellBounds() this->CellBounds = nullptr; } +//------------------------------------------------------------------------------ +void vtkAbstractCellLocator::ComputeCellBounds() +{ + if (this->CacheCellBounds) + { + this->FreeCellBounds(); + this->StoreCellBounds(); + } +} + //------------------------------------------------------------------------------ void vtkAbstractCellLocator::UpdateInternalWeights() { diff --git a/Common/DataModel/vtkAbstractCellLocator.h b/Common/DataModel/vtkAbstractCellLocator.h index c236aea552d4..450ea958cec7 100644 --- a/Common/DataModel/vtkAbstractCellLocator.h +++ b/Common/DataModel/vtkAbstractCellLocator.h @@ -80,6 +80,12 @@ public: vtkBooleanMacro(CacheCellBounds, vtkTypeBool); ///@} + /** + * This function can be used either internally or externally to compute only the cached + * cell bounds if CacheCellBounds is on. + */ + void ComputeCellBounds(); + ///@{ /** * Boolean controls whether to maintain list of cells in each node. diff --git a/Common/DataModel/vtkCellLocator.cxx b/Common/DataModel/vtkCellLocator.cxx index 766d420ea08f..96f3ececb401 100644 --- a/Common/DataModel/vtkCellLocator.cxx +++ b/Common/DataModel/vtkCellLocator.cxx @@ -791,11 +791,7 @@ void vtkCellLocator::BuildLocatorInternal() std::make_shared>>(numOctants, nullptr); this->Tree = TreeSharedPtr->data(); - if (this->CacheCellBounds) - { - this->FreeCellBounds(); - this->StoreCellBounds(); - } + this->ComputeCellBounds(); // Compute width of leaf octant in three directions for (i = 0; i < 3; i++) diff --git a/Common/DataModel/vtkCellTreeLocator.cxx b/Common/DataModel/vtkCellTreeLocator.cxx index 3a3efab22990..d3095a3ff8ec 100644 --- a/Common/DataModel/vtkCellTreeLocator.cxx +++ b/Common/DataModel/vtkCellTreeLocator.cxx @@ -1346,11 +1346,7 @@ void vtkCellTreeLocator::BuildLocatorInternal() return; } this->FreeSearchStructure(); - if (this->CacheCellBounds) - { - this->FreeCellBounds(); - this->StoreCellBounds(); - } + this->ComputeCellBounds(); // Create sorted cell fragments tuples of (cellId,binId). Depending // on problem size, different types are used. if (numCells >= VTK_INT_MAX) diff --git a/Filters/FlowPaths/vtkModifiedBSPTree.cxx b/Filters/FlowPaths/vtkModifiedBSPTree.cxx index efe5b2b68b5d..5bcbae7be24a 100644 --- a/Filters/FlowPaths/vtkModifiedBSPTree.cxx +++ b/Filters/FlowPaths/vtkModifiedBSPTree.cxx @@ -156,11 +156,7 @@ void vtkModifiedBSPTree::BuildLocatorInternal() this->mRoot->mAxis = rand() % 3; this->mRoot->depth = 0; - if (this->CacheCellBounds) - { - this->FreeCellBounds(); - this->StoreCellBounds(); - } + this->ComputeCellBounds(); // sort the cells into 6 lists using structure for subdividing tests Sorted_cell_extents_Lists* lists = new Sorted_cell_extents_Lists(numCells); -- GitLab From 9f150a78dea32567102176b0537645292d55f60d Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 24 May 2022 11:47:18 -0400 Subject: [PATCH 0268/1015] vtkTemporalInterpolatedVelocityField: Use cached Locator if possible --- Common/DataModel/vtkCellLocatorStrategy.cxx | 7 ++- Common/DataModel/vtkClosestPointStrategy.cxx | 7 ++- Common/DataModel/vtkPointSet.cxx | 2 - .../vtkAbstractInterpolatedVelocityField.cxx | 16 +++++-- .../vtkTemporalInterpolatedVelocityField.cxx | 43 +++++++++++++------ .../vtkTemporalInterpolatedVelocityField.h | 4 +- 6 files changed, 55 insertions(+), 24 deletions(-) diff --git a/Common/DataModel/vtkCellLocatorStrategy.cxx b/Common/DataModel/vtkCellLocatorStrategy.cxx index b1a2d079661b..14252ad5595b 100644 --- a/Common/DataModel/vtkCellLocatorStrategy.cxx +++ b/Common/DataModel/vtkCellLocatorStrategy.cxx @@ -98,8 +98,11 @@ int vtkCellLocatorStrategy::Initialize(vtkPointSet* ps) } else { - this->CellLocator = psCL; - this->OwnsLocator = false; + if (psCL != this->CellLocator) + { + this->CellLocator = psCL; + this->OwnsLocator = false; + } } this->InitializeTime.Modified(); diff --git a/Common/DataModel/vtkClosestPointStrategy.cxx b/Common/DataModel/vtkClosestPointStrategy.cxx index 6dd17588f335..33bb41bd162f 100644 --- a/Common/DataModel/vtkClosestPointStrategy.cxx +++ b/Common/DataModel/vtkClosestPointStrategy.cxx @@ -104,8 +104,11 @@ int vtkClosestPointStrategy::Initialize(vtkPointSet* ps) } else { - this->PointLocator = psPL; - this->OwnsLocator = false; + if (psPL != this->PointLocator) + { + this->PointLocator = psPL; + this->OwnsLocator = false; + } } this->VisitedCells.resize(static_cast(ps->GetNumberOfCells())); this->Weights.resize(8); diff --git a/Common/DataModel/vtkPointSet.cxx b/Common/DataModel/vtkPointSet.cxx index 777b9eb3a4c4..eb375f2322d2 100644 --- a/Common/DataModel/vtkPointSet.cxx +++ b/Common/DataModel/vtkPointSet.cxx @@ -199,8 +199,6 @@ void vtkPointSet::BuildCellLocator() { this->CellLocator = vtkStaticCellLocator::New(); } - this->CellLocator->Register(this); - this->CellLocator->Delete(); this->CellLocator->SetDataSet(this); } else if (this->Points->GetMTime() > this->CellLocator->GetMTime()) diff --git a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx index 6d9c6728c968..26116a15b5da 100644 --- a/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkAbstractInterpolatedVelocityField.cxx @@ -157,16 +157,26 @@ void vtkAbstractInterpolatedVelocityField::Initialize(vtkCompositeDataSet* compD for (auto& datasetInfo : this->DataSetsInfo) { datasetInfo.DataSet->ComputeBounds(); + if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) + { + // build cells is needed for both vtkClosestPointStrategy and vtkCellLocatorStrategy + polyData->BuildCells(); + } if (vtkClosestPointStrategy::SafeDownCast(datasetInfo.Strategy)) { if (auto ugrid = vtkUnstructuredGrid::SafeDownCast(datasetInfo.DataSet)) { - ugrid->BuildLinks(); + if (ugrid->GetLinks() == nullptr) + { + ugrid->BuildLinks(); + } } else if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) { - // Build links calls BuildCells internally - polyData->BuildLinks(); + if (polyData->GetLinks() == nullptr) + { + polyData->BuildLinks(); + } } } } diff --git a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.cxx b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.cxx index b6e43b55f5d0..2d69edea4127 100644 --- a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.cxx +++ b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.cxx @@ -123,25 +123,34 @@ void vtkTemporalInterpolatedVelocityField::CreateLocators(const std::vector::New(); - cellLocator->SetDataSet(dataset); - cellLocator->CacheCellBoundsOn(); + if (!pointSet->GetCellLocator()) + { + pointSet->BuildCellLocator(); + } + auto cellLocator = pointSet->GetCellLocator(); + // if cache cell bounds were not on, enable them and compute cell bounds + if (cellLocator->GetCacheCellBounds() == 0) + { + cellLocator->CacheCellBoundsOn(); + cellLocator->ComputeCellBounds(); + } cellLocator->SetUseExistingSearchStructure( this->MeshOverTime != MeshOverTimeTypes::DIFFERENT); - cellLocator->BuildLocator(); locators.emplace_back(cellLocator); } else // vtkClosestPointStrategy { - auto pointLocator = vtkSmartPointer::New(); - pointLocator->SetDataSet(dataset); + if (!pointSet->GetPointLocator()) + { + pointSet->BuildPointLocator(); + } + auto pointLocator = pointSet->GetPointLocator(); pointLocator->SetUseExistingSearchStructure( this->MeshOverTime != MeshOverTimeTypes::DIFFERENT); - pointLocator->BuildLocator(); locators.emplace_back(pointLocator); } } @@ -164,12 +173,19 @@ void vtkTemporalInterpolatedVelocityField::CreateLinks(const std::vectorBuildLinks(); + if (ugrid->GetLinks() == nullptr) + { + ugrid->BuildLinks(); + } datasetLinks.emplace_back(ugrid->GetLinks()); } else if (auto polyData = vtkPolyData::SafeDownCast(dataset)) { - polyData->BuildLinks(); + if (polyData->GetLinks() == nullptr) + { + // Build links calls BuildCells internally + polyData->BuildLinks(); + } datasetLinks.emplace_back(polyData->GetLinks()); } } @@ -206,7 +222,7 @@ void vtkTemporalInterpolatedVelocityField::CreateLinearTransformCellLocators( void vtkTemporalInterpolatedVelocityField::InitializeWithLocators( vtkCompositeInterpolatedVelocityField* ivf, const std::vector& datasets, vtkFindCellStrategy* strategy, const std::vector>& locators, - const std::vector>& datasetLinks) + const std::vector>& links) { // Clear the datasets info, subclasses may want to put stuff into it. ivf->DataSetsInfo.clear(); @@ -269,17 +285,18 @@ void vtkTemporalInterpolatedVelocityField::InitializeWithLocators( datasetInfo.DataSet->ComputeBounds(); if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) { + // build cells is needed for both vtkClosestPointStrategy and vtkCellLocatorStrategy polyData->BuildCells(); } if (vtkClosestPointStrategy::SafeDownCast(datasetInfo.Strategy)) { if (auto ugrid = vtkUnstructuredGrid::SafeDownCast(datasetInfo.DataSet)) { - ugrid->SetLinks(datasetLinks[i]); + ugrid->SetLinks(links[i]); } else if (auto polyData = vtkPolyData::SafeDownCast(datasetInfo.DataSet)) { - polyData->SetLinks(vtkCellLinks::SafeDownCast(datasetLinks[i])); + polyData->SetLinks(vtkCellLinks::SafeDownCast(links[i])); } } } diff --git a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h index d80f51899c98..b9f370d6f43f 100644 --- a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h @@ -50,9 +50,9 @@ #include "vtkDeprecation.h" // For VTK_DEPRECATED_IN_9_2_0 #include "vtkFiltersFlowPathsModule.h" // For export macro #include "vtkFunctionSet.h" -#include "vtkSmartPointer.h" // because it is good +#include "vtkSmartPointer.h" // For vtkSmartPointer -#include // Because they are good +#include // For internal structures class vtkAbstractCellLinks; class vtkCompositeDataSet; -- GitLab From 845418290014372527a1c6fd33cd4dc2516c2cb5 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 24 May 2022 14:01:23 -0400 Subject: [PATCH 0269/1015] vtkParticleTracerBase: Fix MeshOverTime not being set --- Filters/FlowPaths/vtkParticleTracerBase.cxx | 19 +++++++++++++++++-- Filters/FlowPaths/vtkParticleTracerBase.h | 4 +++- .../vtkTemporalInterpolatedVelocityField.h | 2 +- 3 files changed, 21 insertions(+), 4 deletions(-) diff --git a/Filters/FlowPaths/vtkParticleTracerBase.cxx b/Filters/FlowPaths/vtkParticleTracerBase.cxx index f12e3f5075a7..03fd472e0127 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.cxx +++ b/Filters/FlowPaths/vtkParticleTracerBase.cxx @@ -370,10 +370,25 @@ int vtkParticleTracerBase::RequestUpdateExtent(vtkInformation* vtkNotUsed(reques return 1; } +//------------------------------------------------------------------------------ +void vtkParticleTracerBase::SetMeshOverTime(int meshOverTime) +{ + if (this->MeshOverTime != + (meshOverTime < DIFFERENT ? DIFFERENT + : (meshOverTime > SAME_TOPOLOGY ? SAME_TOPOLOGY : meshOverTime))) + { + this->MeshOverTime = + (meshOverTime < DIFFERENT ? DIFFERENT + : (meshOverTime > SAME_TOPOLOGY ? SAME_TOPOLOGY : meshOverTime)); + this->Modified(); + // Needed since the value needs to be set at the same time. + this->Interpolator->SetMeshOverTime(this->MeshOverTime); + } +} + //------------------------------------------------------------------------------ void vtkParticleTracerBase::SetInterpolatorType(int interpolatorType) { - this->Interpolator->SetMeshOverTime(this->MeshOverTime); if (interpolatorType == INTERPOLATOR_WITH_CELL_LOCATOR) { // create an interpolator equipped with a cell locator (by default) @@ -431,7 +446,7 @@ int vtkParticleTracerBase::InitializeInterpolator() return VTK_ERROR; } - // create Interpolator if needed + // set strategy if needed if (this->Interpolator->GetFindCellStrategy() == nullptr) { // cell locator is the default; diff --git a/Filters/FlowPaths/vtkParticleTracerBase.h b/Filters/FlowPaths/vtkParticleTracerBase.h index 1e9c49e8bf9d..1925c875daa0 100644 --- a/Filters/FlowPaths/vtkParticleTracerBase.h +++ b/Filters/FlowPaths/vtkParticleTracerBase.h @@ -229,7 +229,9 @@ public: * LINEAR_TRANSFORMATION = 2 * SAME_TOPOLOGY = 3 */ - vtkSetClampMacro(MeshOverTime, int, DIFFERENT, LINEAR_TRANSFORMATION); + virtual void SetMeshOverTime(int meshOverTime); + virtual int GetMeshOverTimeMinValue() { return DIFFERENT; } + virtual int GetMeshOverTimeMaxValue() { return SAME_TOPOLOGY; } void SetMeshOverTimeToDifferent() { this->SetMeshOverTime(DIFFERENT); } void SetMeshOverTimeToStatic() { this->SetMeshOverTime(STATIC); } void SetMeshOverTimeToLinearTransformation() { this->SetMeshOverTime(LINEAR_TRANSFORMATION); } diff --git a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h index b9f370d6f43f..05502df33b8f 100644 --- a/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h +++ b/Filters/FlowPaths/vtkTemporalInterpolatedVelocityField.h @@ -108,7 +108,7 @@ public: * LINEAR_TRANSFORMATION = 2 * SAME_TOPOLOGY = 3 */ - vtkSetClampMacro(MeshOverTime, int, DIFFERENT, LINEAR_TRANSFORMATION); + vtkSetClampMacro(MeshOverTime, int, DIFFERENT, SAME_TOPOLOGY); void SetMeshOverTimeToDifferent() { this->SetMeshOverTime(DIFFERENT); } void SetMeshOverTimeToStatic() { this->SetMeshOverTime(STATIC); } void SetMeshOverTimeToLinearTransformation() { this->SetMeshOverTime(LINEAR_TRANSFORMATION); } -- GitLab From 74239fc399dcb7c59a2010c62942d171ab44063e Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Wed, 25 May 2022 00:01:39 -0400 Subject: [PATCH 0270/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 9ceb103ff8d7..71173597f7af 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220524) +set(VTK_BUILD_VERSION 20220525) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 7d63167b45d3c8175c77e43fa9625dece72477d5 Mon Sep 17 00:00:00 2001 From: Will Schroeder Date: Wed, 25 May 2022 12:06:36 -0400 Subject: [PATCH 0271/1015] Support weighted data attribute interpolation. Added functionality to support weighted average data attribute interpolation. --- Common/DataModel/vtkArrayListTemplate.h | 39 +++++++++++++++++++++++++ Common/DataModel/vtkCellArray.h | 15 ++++++++++ 2 files changed, 54 insertions(+) diff --git a/Common/DataModel/vtkArrayListTemplate.h b/Common/DataModel/vtkArrayListTemplate.h index 495b63c89ef8..1218b9088a21 100644 --- a/Common/DataModel/vtkArrayListTemplate.h +++ b/Common/DataModel/vtkArrayListTemplate.h @@ -73,6 +73,8 @@ struct BaseArrayPair virtual void Interpolate( int numWeights, const vtkIdType* ids, const double* weights, vtkIdType outId) = 0; virtual void Average(int numPts, const vtkIdType* ids, vtkIdType outId) = 0; + virtual void WeightedAverage( + int numPts, const vtkIdType* ids, const double* weights, vtkIdType outId) = 0; virtual void InterpolateEdge(vtkIdType v0, vtkIdType v1, double t, vtkIdType outId) = 0; virtual void AssignNullValue(vtkIdType outId) = 0; virtual void Realloc(vtkIdType sze) = 0; @@ -131,6 +133,20 @@ struct ArrayPair : public BaseArrayPair } } + void WeightedAverage( + int numPts, const vtkIdType* ids, const double* weights, vtkIdType outId) override + { + for (int j = 0; j < this->NumComp; ++j) + { + double v = 0.0; + for (vtkIdType i = 0; i < numPts; ++i) + { + v += (weights[i] + static_cast(this->Input[ids[i] * this->NumComp + j])); + } + this->Output[outId * this->NumComp + j] = static_cast(v); + } + } + void InterpolateEdge(vtkIdType v0, vtkIdType v1, double t, vtkIdType outId) override { double v; @@ -215,6 +231,20 @@ struct RealArrayPair : public BaseArrayPair } } + void WeightedAverage( + int numPts, const vtkIdType* ids, const double* weights, vtkIdType outId) override + { + for (int j = 0; j < this->NumComp; ++j) + { + double v = 0.0; + for (vtkIdType i = 0; i < numPts; ++i) + { + v += (weights[i] * static_cast(this->Input[ids[i] * this->NumComp + j])); + } + this->Output[outId * this->NumComp + j] = static_cast(v); + } + } + void InterpolateEdge(vtkIdType v0, vtkIdType v1, double t, vtkIdType outId) override { double v; @@ -305,6 +335,15 @@ struct ArrayList } } + // Loop over the arrays and weighted average the attributes. The weights should sum to 1.0. + void WeightedAverage(int numPts, const vtkIdType* ids, const double* weights, vtkIdType outId) + { + for (std::vector::iterator it = Arrays.begin(); it != Arrays.end(); ++it) + { + (*it)->WeightedAverage(numPts, ids, weights, outId); + } + } + // Loop over the arrays perform edge interpolation void InterpolateEdge(vtkIdType v0, vtkIdType v1, double t, vtkIdType outId) { diff --git a/Common/DataModel/vtkCellArray.h b/Common/DataModel/vtkCellArray.h index decf803f4bc4..9509beb8db50 100644 --- a/Common/DataModel/vtkCellArray.h +++ b/Common/DataModel/vtkCellArray.h @@ -339,6 +339,21 @@ public: } } + /** + * Get the offset (into the connectivity) for a specified cell id. + */ + vtkIdType GetOffset(vtkIdType cellId) + { + if (this->Storage.Is64Bit()) + { + return this->Storage.GetArrays64().Offsets->GetValue(cellId); + } + else + { + return this->Storage.GetArrays32().Offsets->GetValue(cellId); + } + } + /** * Get the size of the connectivity array that stores the point ids. * @note Do not confuse this with the deprecated -- GitLab From 57b10fa71ba0ee656271d0d0deb53e0b91a6ca60 Mon Sep 17 00:00:00 2001 From: Boonthanome Nouanesengsy Date: Wed, 27 Apr 2022 13:33:40 -0600 Subject: [PATCH 0272/1015] support for material variables in pio reader Show all availble material variables in the PIO Reader, and allow the user to select and load them. There is one exception: instead of loading material volume, compute and show material volume fraction. --- IO/PIO/PIOAdaptor.cxx | 438 +++++++++++++++++++++++++++++++++--------- IO/PIO/PIOAdaptor.h | 27 ++- IO/PIO/PIOData.cxx | 35 ++++ IO/PIO/PIOData.h | 2 + 4 files changed, 405 insertions(+), 97 deletions(-) diff --git a/IO/PIO/PIOAdaptor.cxx b/IO/PIO/PIOAdaptor.cxx index 662cb5d31ead..2587c5628f99 100644 --- a/IO/PIO/PIOAdaptor.cxx +++ b/IO/PIO/PIOAdaptor.cxx @@ -32,6 +32,7 @@ #include #include #include +#include #include #ifdef _WIN32 @@ -134,7 +135,7 @@ struct PIOAdaptor::AdaptorImpl int* countCell; // mpi tag - const int mpiTag = 2564961; + const int mpiTag = 18131; }; /////////////////////////////////////////////////////////////////////////////// @@ -162,6 +163,8 @@ PIOAdaptor::PIOAdaptor(vtkMultiProcessController* ctrl) this->TotalRank = 1; } this->pioData = nullptr; + this->numMaterials = 0; + this->numCells = 0; // For load balancing in unstructured grid this->Impl->startCell = new int[this->TotalRank]; @@ -177,6 +180,13 @@ PIOAdaptor::~PIOAdaptor() delete[] this->Impl->startCell; delete[] this->Impl->endCell; delete[] this->Impl->countCell; + + for (std::map::iterator it = this->matVariables.begin(); + it != this->matVariables.end(); it++) + { + delete it->second; + } + this->matVariables.clear(); } /////////////////////////////////////////////////////////////////////////////// @@ -207,7 +217,6 @@ int PIOAdaptor::initializeGlobal(const char* PIOFileName) BroadcastStringVector(this->Controller, this->dumpFileName, this->Rank); BroadcastStringVector(this->Controller, this->variableName, this->Rank); BroadcastStringVector(this->Controller, this->variableDefault, this->Rank); - BroadcastStringList(this->Controller, this->fieldsToRead, this->Rank); BroadcastDoubleVector(this->Controller, this->CycleIndex, this->Rank); BroadcastDoubleVector(this->Controller, this->SimulationTime, this->Rank); BroadcastDoubleVector(this->Controller, this->PIOFileIndex, this->Rank); @@ -534,7 +543,7 @@ int PIOAdaptor::parsePIOFile(const char* PIOFileName) /////////////////////////////////////////////////////////////////////////////// // -// Read the variable meta data from first pio dump file +// Read the variable meta data from a pio dump file // /////////////////////////////////////////////////////////////////////////////// @@ -555,7 +564,7 @@ void PIOAdaptor::collectVariableMetaData() this->hasTracers = true; } - // Default variable names that are initially enabled for loading if pres + // Default variable names that are initially enabled for loading if present if ((strcmp(pioName, "tev") == 0) || (strcmp(pioName, "pres") == 0) || (strcmp(pioName, "rho") == 0) || (strcmp(pioName, "rade") == 0) || (strcmp(pioName, "cell_energy") == 0) || (strcmp(pioName, "kemax") == 0) || @@ -577,13 +586,15 @@ void PIOAdaptor::collectVariableMetaData() if ((numberOfComponents <= 9) && (strcmp(pioName, "cell_has_tracers") != 0) && (strcmp(pioName, "cell_level") != 0) && (strcmp(pioName, "cell_mother") != 0) && (strcmp(pioName, "cell_daughter") != 0) && (strcmp(pioName, "cell_center") != 0) && - (strcmp(pioName, "cell_active") != 0) && (strcmp(pioName, "amr_tag") != 0)) + (strcmp(pioName, "cell_active") != 0) && (strcmp(pioName, "amr_tag") != 0) && + (strcmp(pioName, "chunk_nummat") != 0)) { this->variableName.emplace_back(pioName); } } } } + // IF xdt, ydt, zdt, rho are not already included, include them // If we used a set std::set s; we could simply add these items again without // worrying if they were in there in the first place. And we could check in log time rather than @@ -614,42 +625,185 @@ void PIOAdaptor::collectVariableMetaData() this->variableName.emplace_back("rho"); this->variableDefault.emplace_back("rho"); // and enable by default } + + collectMaterialVariableMetaData(); + sort(this->variableName.begin(), this->variableName.end()); +} - // - // List of all data fields to read from dump files - // - this->fieldsToRead.emplace_back("amhc_i"); - this->fieldsToRead.emplace_back("amhc_r8"); - this->fieldsToRead.emplace_back("amhc_l"); - this->fieldsToRead.emplace_back("cell_center"); - this->fieldsToRead.emplace_back("cell_daughter"); - this->fieldsToRead.emplace_back("cell_level"); - this->fieldsToRead.emplace_back("global_numcell"); - this->fieldsToRead.emplace_back("hist_cycle"); - this->fieldsToRead.emplace_back("hist_time"); - this->fieldsToRead.emplace_back("hist_size"); - this->fieldsToRead.emplace_back("l_eap_version"); - this->fieldsToRead.emplace_back("hist_usernm"); - this->fieldsToRead.emplace_back("hist_prbnm"); - this->fieldsToRead.emplace_back("controller_i"); - this->fieldsToRead.emplace_back("controller_r8"); - - // If tracers are contained in the file - if (this->hasTracers) - { - this->fieldsToRead.emplace_back("tracer_num_pnts"); - this->fieldsToRead.emplace_back("tracer_num_vars"); - this->fieldsToRead.emplace_back("tracer_record_count"); - this->fieldsToRead.emplace_back("tracer_type"); - this->fieldsToRead.emplace_back("tracer_position"); - this->fieldsToRead.emplace_back("tracer_data"); - } - - // Requested variable fields from pio meta file - for (size_t i = 0; i < this->variableName.size(); i++) - { - this->fieldsToRead.push_back(this->variableName[i]); +/////////////////////////////////////////////////////////////////////////////// +// +// Gather material variable metadata +// +/////////////////////////////////////////////////////////////////////////////// + +void PIOAdaptor::collectMaterialVariableMetaData() +{ + // collect material variables. + // material variables are chunked, so we need to collect information about each + // material variable, and reconstruct the data later. + std::valarray histsize; + this->pioData->set_scalar_field(histsize, "hist_size"); + int numberOfFields = this->pioData->get_pio_num(); + PIO_FIELD* pioField = this->pioData->get_pio_field(); + + // get names of materials + this->numMaterials = static_cast(this->pioData->VarMMap.count("matdef")); + std::vector matident; // name of materials + matident.resize(0); + if (this->pioData->VarMMap.count("matident") > 0) + { + // the matident field contains the material names as strings + PIO_FIELD* pio_field = this->pioData->VarMMap.equal_range("matident").first->second; + matident.resize(this->numMaterials); + const char* cdata; + this->pioData->GetPIOData(*pio_field, cdata); + size_t cdata_len = pio_field->cdata_len; + for (int i = 0; i < this->numMaterials; i++) + { + matident[i] = cdata + i * cdata_len; + // Hackaround, remove any trailing #'s from matident[i] + std::string::size_type len = matident[i].length(); + std::string::size_type first_sharp = matident[i].find_first_of('#', 0); + if (first_sharp == 0) + { + std::ostringstream ost; + ost << "UnknownMat" << i; + matident[i] = ost.str(); + } + else if (first_sharp != std::string::npos) + { + matident[i].erase(first_sharp, len - first_sharp); + } + } + } + else + { + // the matident field is not present. obtain a material number from + // the material's matdef field, aka, matdef_1, matdef_2, etc. + matident.resize(this->numMaterials); + VMP b = this->pioData->VarMMap.equal_range("matdef"); + VMI ii = b.first; + int nd = 0; + for (int n = this->numMaterials; n > 0 || n % 10; n /= 10) + ++nd; + for (int i = 0; i < this->numMaterials; ++i) + { + std::ostringstream ost; + ost.width(nd); + ost.fill('0'); + ost << i + 1; + matident[i] = std::string("Mat-") + ost.str(); + } + for (int i = 0; (i < this->numMaterials) && (ii != b.second); i++, ii++) + { + const double* data = this->pioData->GetPIOData(*ii->second); + double sesid = data[0]; + std::ostringstream ost; + ost << "-" << sesid; + matident[i] += ost.str(); + } + } + + // identify material variables. + // material variables begin with a prefix, which is usually 'chunk_', but it could be + // something else. the full material name is then _. for each material variable + // prefix, there should be a matching _nummat field, so find all material prefixes, + // then a material variable is any field that begins with a possible prefix. + std::vector prefixes; + for (int i = 0; i < numberOfFields; i++) + { + // check if this field name ends in '_nummat' + vtkStdString pioFieldName = vtkStdString(pioField[i].pio_name); + vtkStdString nummatStr = vtkStdString("_nummat"); + std::size_t matchNummat = pioFieldName.find(nummatStr); + if (matchNummat != std::string::npos) + { + if (matchNummat + nummatStr.length() == pioFieldName.length()) + { + // found a material prefix, store the prefix, including the underscore + vtkStdString prefix = + pioFieldName.substr(0, pioFieldName.length() - nummatStr.length() + 1); + prefixes.emplace_back(prefix); + } + } + } + + // if a field starts with any prefix, it is a material variable + for (int i = 0; i < numberOfFields; i++) + { + vtkStdString pioFieldName = vtkStdString(pioField[i].pio_name); + for (size_t j = 0; j < prefixes.size(); j++) + { + std::size_t matchPrefix = pioFieldName.find(prefixes[j]); + if (matchPrefix == 0) + { + // exclude _nummat and _mat + std::size_t matchNummat = pioFieldName.find("_nummat"); + std::size_t matchMat = pioFieldName.find("_mat"); + if ((matchNummat == std::string::npos) && (matchMat == std::string::npos)) + { + // found a material variable + addMaterialVariable(pioFieldName, matident); + } + } + } + } +} + +/////////////////////////////////////////////////////////////////////////////// +// +// Given a pio field name that is a material variable, create variable +// entries for each material. +// +/////////////////////////////////////////////////////////////////////////////// + +void PIOAdaptor::addMaterialVariable(vtkStdString& pioFieldName, std::vector matident) +{ + // material/chunk variables should have an underscore in them, with the part before the + // underscore being the prefix. the prefix is usually chunk. the part after the underscore is + // the variable name. check if the field name has an underscore. + std::size_t matchUnderscore = pioFieldName.rfind("_"); + if (matchUnderscore == std::string::npos) + { + vtkGenericWarningMacro("Possible material variable " + << pioFieldName + << " does not have an underscore in the name, and is not a valid material name."); + return; + } + std::string prefix = pioFieldName.substr(0, matchUnderscore); + std::string fieldVar = + pioFieldName.substr(matchUnderscore + 1, pioFieldName.size() - matchUnderscore); + + // if var is vol (material volume), we actually want to instead add the volume fraction, which + // is material volume (vol) divided by cell volume (vcell). volume fraction is called fvol. + std::string varname = fieldVar; + if (varname == "vol") + { + varname = "fvol"; + } + + // for each material, create a material variable entry + for (int j = 1; j <= this->numMaterials; j++) + { + // the material name is __ + vtkStdString matName = varname + "_" + std::to_string(j) + "_" + matident[j - 1]; + this->variableName.emplace_back(matName); + + PIOMaterialVariable* matvar = new PIOMaterialVariable(); + matvar->prefix = prefix; + matvar->var = fieldVar; + matvar->material_name = matident[j - 1]; + matvar->material_number = j; + matvar->scale = false; + + // for fvol, set the variable to be scaled (divided by vcell) + if (varname == "fvol") + { + matvar->scale = true; + } + + this->matVariables[matName] = matvar; } } @@ -675,7 +829,7 @@ int PIOAdaptor::initializeDump(int timeStep) // Create one PIOData which accesses the PIO file to fetch data if (this->pioData == nullptr) { - this->pioData = new PIO_DATA(this->dumpFileName[timeStep].c_str(), &this->fieldsToRead); + this->pioData = new PIO_DATA(this->dumpFileName[timeStep].c_str()); if (this->pioData->good_read()) { // First collect the sizes of the domains @@ -683,6 +837,16 @@ int PIOAdaptor::initializeDump(int timeStep) const double* amhc_r8 = this->pioData->GetPIOData("amhc_r8"); const double* amhc_l = this->pioData->GetPIOData("amhc_l"); + // find the total number of cells in the mesh + // do this by summing up all values in global_numcell + std::valarray numcell; + this->pioData->set_scalar_field(numcell, "global_numcell"); + this->numCells = 0; + for (size_t i = 0; i < numcell.size(); i++) + { + this->numCells += numcell[i]; + } + if (amhc_i != nullptr && amhc_r8 != nullptr && amhc_l != nullptr) { this->Impl->dimension = uint32_t(amhc_i[Nnumdim]); @@ -1671,6 +1835,7 @@ void PIOAdaptor::load_variable_data( } else { + // TODO: add material data support to HTG load_variable_data_HTG(grid, cellDataArraySelection); } } @@ -1699,32 +1864,60 @@ void PIOAdaptor::load_variable_data_UG( // Using PIOData fetch the variable data from the file only on proc 0 if (this->Rank == 0) { + bool status = false; numberOfCells = this->Impl->countCell[0]; - numberOfComponents = - static_cast(this->pioData->VarMMap.count(this->variableName[var].c_str())); - - const char* thisvar = this->variableName[var].c_str(); - // detect a derived array which is not in the VarMMap and set its # of components - // pioData->set_scalar_field() will know what to do with these variables - if (strcmp(thisvar, "xdt") == 0 || strcmp(thisvar, "ydt") == 0 || - strcmp(thisvar, "zdt") == 0 || strcmp(thisvar, "rho") == 0) + + // check if variable is a material variable + if (this->matVariables.count(this->variableName[var]) > 0) { numberOfComponents = 1; - } - dataVector = new double*[numberOfComponents]; - bool status = true; - if (numberOfComponents == 1) - { - status = this->pioData->set_scalar_field(scalarArray, this->variableName[var].c_str()); + dataVector = new double*[numberOfComponents]; + PIOMaterialVariable* matvar = this->matVariables[this->variableName[var]]; + + // reconstruct the material variable + status = this->pioData->reconstruct_chunk_field(this->numCells, scalarArray, + matvar->prefix.c_str(), matvar->var.c_str(), matvar->material_number); dataVector[0] = &scalarArray[0]; + + if (status && matvar->scale) + { + // scale variable by dividing values by volume + std::valarray volume; + bool vcell_status = this->pioData->set_scalar_field(volume, "vcell"); + if (vcell_status) + { + scalarArray = scalarArray / volume; + } + } } else { - status = this->pioData->set_vector_field(vectorArray, this->variableName[var].c_str()); - for (int d = 0; d < numberOfComponents; d++) + // not a material variable, must be a normal variable + numberOfComponents = + static_cast(this->pioData->VarMMap.count(this->variableName[var].c_str())); + + const char* thisvar = this->variableName[var].c_str(); + // detect a derived array which is not in the VarMMap and set its # of components + // pioData->set_scalar_field() will know what to do with these variables + if (strcmp(thisvar, "xdt") == 0 || strcmp(thisvar, "ydt") == 0 || + strcmp(thisvar, "zdt") == 0 || strcmp(thisvar, "rho") == 0) { - dataVector[d] = &vectorArray[d][0]; - }; + numberOfComponents = 1; + } + dataVector = new double*[numberOfComponents]; + if (numberOfComponents == 1) + { + status = this->pioData->set_scalar_field(scalarArray, this->variableName[var].c_str()); + dataVector[0] = &scalarArray[0]; + } + else + { + status = this->pioData->set_vector_field(vectorArray, this->variableName[var].c_str()); + for (int d = 0; d < numberOfComponents; d++) + { + dataVector[d] = &vectorArray[d][0]; + } + } } if (!status) @@ -1813,68 +2006,125 @@ void PIOAdaptor::load_variable_data_HTG( { if (this->Rank == 0) { - // Using PIOData fetch the variable data from the file - numberOfComponents = - static_cast(this->pioData->VarMMap.count(this->variableName[var].c_str())); - const char* thisvar = this->variableName[var].c_str(); - // detect a derived array which is not in the VarMMap and set its # of components - // pioData->set_scalar_field() will know what to do with these variables - if (strcmp(thisvar, "xdt") == 0 || strcmp(thisvar, "ydt") == 0 || - strcmp(thisvar, "zdt") == 0 || strcmp(thisvar, "rho") == 0) + bool status = false; + + // check if variable is a material variable + if (this->matVariables.count(this->variableName[var]) > 0) { + numberOfCells = this->numCells; numberOfComponents = 1; - } - dataVector = new double*[numberOfComponents]; - if (numberOfComponents == 1) - { - this->pioData->set_scalar_field(scalarArray, this->variableName[var].c_str()); - numberOfCells = static_cast(scalarArray.size()); + dataVector = new double*[numberOfComponents]; + PIOMaterialVariable* matvar = this->matVariables[this->variableName[var]]; + + // reconstruct the material variable + status = this->pioData->reconstruct_chunk_field(this->numCells, scalarArray, + matvar->prefix.c_str(), matvar->var.c_str(), matvar->material_number); dataVector[0] = &scalarArray[0]; + + if (status && matvar->scale) + { + // scale variable by dividing values by volume + std::valarray volume; + bool vcell_status = this->pioData->set_scalar_field(volume, "vcell"); + if (vcell_status) + { + scalarArray = scalarArray / volume; + } + } } else { - this->pioData->set_vector_field(vectorArray, this->variableName[var].c_str()); - numberOfCells = static_cast(vectorArray[0].size()); - for (int d = 0; d < numberOfComponents; d++) + // not a material variable, must be a normal variable + numberOfComponents = + static_cast(this->pioData->VarMMap.count(this->variableName[var].c_str())); + const char* thisvar = this->variableName[var].c_str(); + // detect a derived array which is not in the VarMMap and set its # of components + // pioData->set_scalar_field() will know what to do with these variables + if (strcmp(thisvar, "xdt") == 0 || strcmp(thisvar, "ydt") == 0 || + strcmp(thisvar, "zdt") == 0 || strcmp(thisvar, "rho") == 0) + { + numberOfComponents = 1; + } + dataVector = new double*[numberOfComponents]; + if (numberOfComponents == 1) { - dataVector[d] = &vectorArray[d][0]; + status = this->pioData->set_scalar_field(scalarArray, this->variableName[var].c_str()); + numberOfCells = static_cast(scalarArray.size()); + dataVector[0] = &scalarArray[0]; + } + else + { + status = this->pioData->set_vector_field(vectorArray, this->variableName[var].c_str()); + numberOfCells = static_cast(vectorArray[0].size()); + for (int d = 0; d < numberOfComponents; d++) + { + dataVector[d] = &vectorArray[d][0]; + } } } - } - // Broadcast number of components and number of cells - this->Controller->Broadcast(&numberOfCells, 1, 0); - this->Controller->Broadcast(&numberOfComponents, 1, 0); + if (!status) + { + // send a -1 as the number of cells to signal to other ranks to skip this variable + int negative_one = -1; + for (int rank = 1; rank < this->TotalRank; rank++) + { + this->Controller->Send(&negative_one, 1, rank, this->Impl->mpiTag); + } + vtkGenericWarningMacro("Error, PIO data was not retrieved: " << this->variableName[var]); + } + else + { + // send number of cells, number of components, and data + for (int rank = 1; rank < this->TotalRank; rank++) + { + this->Controller->Send(&numberOfCells, 1, rank, this->Impl->mpiTag); + this->Controller->Send(&numberOfComponents, 1, rank, this->Impl->mpiTag); + for (int d = 0; d < numberOfComponents; d++) + { + this->Controller->Send(&dataVector[d][0], numberOfCells, rank, this->Impl->mpiTag); + } + } + + // Adding data to hypertree grid uses indirect array built when geometry was built + add_amr_HTG_scalar(grid, this->variableName[var], dataVector, numberOfComponents); - // Other processors allocate dataVector - if (this->Rank > 0) + delete[] dataVector; + } + } + else { + // ranks other than rank 0 + this->Controller->Receive(&numberOfCells, 1, 0, this->Impl->mpiTag); + if (numberOfCells == -1) + { + // there was a problem reading this variable, skip + continue; + } + this->Controller->Receive(&numberOfComponents, 1, 0, this->Impl->mpiTag); + // Allocate space to receive data dataVector = new double*[numberOfComponents]; for (int d = 0; d < numberOfComponents; d++) { dataVector[d] = new double[numberOfCells]; } - } - // Broadcast the data - for (int d = 0; d < numberOfComponents; d++) - { - this->Controller->Broadcast(dataVector[d], numberOfCells, 0); - } + for (int d = 0; d < numberOfComponents; d++) + { + this->Controller->Receive(&dataVector[d][0], numberOfCells, 0, this->Impl->mpiTag); + } - // Adding data to hypertree grid uses indirect array built when geometry was built - add_amr_HTG_scalar(grid, this->variableName[var], dataVector, numberOfComponents); + // Adding data to hypertree grid uses indirect array built when geometry was built + add_amr_HTG_scalar(grid, this->variableName[var], dataVector, numberOfComponents); - // Clear out allocated data for other processors - if (this->Rank > 0) - { + // Clear out allocated data for (int d = 0; d < numberOfComponents; d++) { delete[] dataVector[d]; } + delete[] dataVector; } - delete[] dataVector; } } } diff --git a/IO/PIO/PIOAdaptor.h b/IO/PIO/PIOAdaptor.h index dcd22c2d1fe7..a51cd42a0196 100644 --- a/IO/PIO/PIOAdaptor.h +++ b/IO/PIO/PIOAdaptor.h @@ -25,6 +25,20 @@ class vtkMultiProcessController; +// class to hold information about chunk/material variables +class PIOMaterialVariable +{ +public: + std::string prefix; + std::string var; + std::string material_name; // full name of the material + uint32_t material_number; + + // whether the variable should be scaled. scaled means the variable + // needs to be divided by volume (vcell) + bool scale; +}; + class PIOAdaptor { public: @@ -65,6 +79,8 @@ protected: int parsePIOFile(const char* DumpDescFile); int collectMetaData(const char* DumpDescFile); void collectVariableMetaData(); + void collectMaterialVariableMetaData(); + void addMaterialVariable(vtkStdString& pioFieldName, std::vector matident); std::string trimString(const std::string& str); // Create the unstructured grid for tracers @@ -121,9 +137,6 @@ protected: // Structure to access the dump file data PIO_DATA* pioData; - // Fields of interest in dump file - std::list fieldsToRead; - // Time series of dumps std::string descFileName; // name.pio std::string dumpBaseName; // base name to use for dumps @@ -145,10 +158,18 @@ protected: std::vector variableName; std::vector variableDefault; + // total number of cells in the mesh. needed when loading material variables. + // obtained by summing all values in pio field global_numcells + int64_t numCells; + // Record the ordering of the cells when building the hypertree grid // Needed so that the data will line up correctly std::vector indexNodeLeaf; + // list of material variables + std::map matVariables; + int numMaterials; + struct AdaptorImpl; AdaptorImpl* Impl; }; diff --git a/IO/PIO/PIOData.cxx b/IO/PIO/PIOData.cxx index cc786f020e7f..9d10493a1678 100644 --- a/IO/PIO/PIOData.cxx +++ b/IO/PIO/PIOData.cxx @@ -431,7 +431,9 @@ bool PIO_DATA::set_scalar_field(std::valarray& v, const char* fieldname) } } if (v.size() < size_t(length)) + { v.resize(length); + } for (int64_t i = 0; i < length; ++i) { if (cell_active && (cell_active[i] == 0.0)) @@ -960,3 +962,36 @@ void PIO_DATA::ReadPioFieldData(PIO_FIELD& _pio_field) } } } + +bool PIO_DATA::reconstruct_chunk_field( + int64_t numcell, std::valarray& va, const char* prefix, const char* var, int materialId) +{ + std::string PreFix = std::string(prefix); + std::string matname = PreFix + "_" + var; + std::string chunk_nummat_string = PreFix + "_nummat"; + std::string chunk_mat_string = PreFix + "_mat"; + + if ((VarMMap.count(matname.c_str()) != 1) || (VarMMap.count(chunk_nummat_string.c_str()) != 1) || + (VarMMap.count(chunk_mat_string.c_str()) != 1)) + { + return false; + } + const double* cl = GetPIOData(matname.c_str()); + const double* chunk_nummat = GetPIOData(chunk_nummat_string.c_str()); + const double* chunk_mat = GetPIOData(chunk_mat_string.c_str()); + va.resize(numcell); + va = 0; + for (int64_t l = 0; l < numcell; ++l) + { + for (int j = 0; j < chunk_nummat[l]; ++j) + { + if ((int(*chunk_mat)) == materialId) + { + va[l] = *cl; + } + chunk_mat++; + cl++; + } + } + return true; +} diff --git a/IO/PIO/PIOData.h b/IO/PIO/PIOData.h index dc77100117ee..98137f44c1ca 100644 --- a/IO/PIO/PIOData.h +++ b/IO/PIO/PIOData.h @@ -83,6 +83,8 @@ public: void GetPIOData(const char*, const char*&); const double* GetPIOData(const char*); double GetPIOData(const char*, int); + bool reconstruct_chunk_field(int64_t numcell, std::valarray& va, const char* prefix, + const char* var, int materialId); void AddRealData(const char* _name) { if (RealData.find(_name) == RealData.end()) -- GitLab From 5b0493566192ec083222563330fb13bcacd7bb64 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Thu, 26 May 2022 00:01:27 -0400 Subject: [PATCH 0273/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 71173597f7af..61527c3baf7b 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220525) +set(VTK_BUILD_VERSION 20220526) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 0d70f7318830dba7ff14cad7d3947bd02cb1246c Mon Sep 17 00:00:00 2001 From: Will Schroeder Date: Thu, 26 May 2022 08:03:31 -0400 Subject: [PATCH 0274/1015] Fixed typo --- Common/DataModel/vtkArrayListTemplate.h | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Common/DataModel/vtkArrayListTemplate.h b/Common/DataModel/vtkArrayListTemplate.h index 1218b9088a21..1a816969a8b3 100644 --- a/Common/DataModel/vtkArrayListTemplate.h +++ b/Common/DataModel/vtkArrayListTemplate.h @@ -141,7 +141,7 @@ struct ArrayPair : public BaseArrayPair double v = 0.0; for (vtkIdType i = 0; i < numPts; ++i) { - v += (weights[i] + static_cast(this->Input[ids[i] * this->NumComp + j])); + v += (weights[i] * static_cast(this->Input[ids[i] * this->NumComp + j])); } this->Output[outId * this->NumComp + j] = static_cast(v); } -- GitLab From 1125a469228ac4e2f02677e8c4bbad7bbb3997cc Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Fri, 27 May 2022 00:01:34 -0400 Subject: [PATCH 0275/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 61527c3baf7b..6ccaa1d7add5 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220526) +set(VTK_BUILD_VERSION 20220527) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 34770dba39efdba79962f290452cb4818ccdef39 Mon Sep 17 00:00:00 2001 From: David Gobbi Date: Fri, 27 May 2022 09:55:13 -0600 Subject: [PATCH 0276/1015] Fix generate_pyi compatibility with Python 3.7 and lower The docstring annotation filtering requires features of Python's ast parser module that weren't available until Python 3.8 --- Wrapping/Python/vtkmodules/generate_pyi.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Wrapping/Python/vtkmodules/generate_pyi.py b/Wrapping/Python/vtkmodules/generate_pyi.py index ca5c4dbca21c..2368a1d40014 100755 --- a/Wrapping/Python/vtkmodules/generate_pyi.py +++ b/Wrapping/Python/vtkmodules/generate_pyi.py @@ -254,7 +254,9 @@ def push_signature(o, l, signature): elif signature.startswith(o.__name__ + "("): # make it into a python method definition signature = "def " + signature + ': ...' - signature = fix_annotations(signature) + if sys.hexversion >= 0x3080000: + # XXX(Python 3.8) uses ast features from 3.8 + signature = fix_annotations(signature) if signature not in l: l.append(signature) -- GitLab From 517b7cb4b7bc92d77998d9389fded6c0e741895a Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sat, 28 May 2022 00:01:35 -0400 Subject: [PATCH 0277/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 6ccaa1d7add5..bded5cd05ebc 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220527) +set(VTK_BUILD_VERSION 20220528) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 6e2ca28f85a29a879af9c09c5717d0a5ae856196 Mon Sep 17 00:00:00 2001 From: Andrew Maclean Date: Sat, 28 May 2022 15:05:56 +1000 Subject: [PATCH 0278/1015] Added an updated version of WhatModulesVTK --- Utilities/Maintenance/WhatModulesVTK.py | 331 ++++++++++++++---------- 1 file changed, 195 insertions(+), 136 deletions(-) diff --git a/Utilities/Maintenance/WhatModulesVTK.py b/Utilities/Maintenance/WhatModulesVTK.py index b9e245233af0..a60a08cd4bce 100755 --- a/Utilities/Maintenance/WhatModulesVTK.py +++ b/Utilities/Maintenance/WhatModulesVTK.py @@ -1,150 +1,209 @@ -#!/usr/bin/env python2 -import os, sys -import re +#!/usr/bin/env python -def displayHelp(): - print """ -Usage: WhatModulesVTK.py vtkSourceTree applicationFile|applicationFolder - Generate a FindPackage(VTK COMPONENTS) that lists all modules - referenced by a set of files. - - For example: - Running from the VTK source, - ./Utilities/Maintenance/WhatModulesVTK.py . Filters/Modeling/Testing/Cxx/TestRotationalExtrusion.cxx - Produces - All modules referenced in the files: - find_package(VTK COMPONENTS - CommonCore - FiltersCore - FiltersModeling - FiltersSources - RenderingCore - RenderingOpenGL2 - TestingCore - TestingRendering - ) - Your application code includes 8 of 170 vtk modules. - -""" - exit(0) - -def IncludesToPaths(path): - ''' - Build a dict that maps include files to paths. - ''' - includeToPath = dict() - prog = re.compile(r"((?:vtk|QVTK).*\.h)") - for root, dirs, files in os.walk(path): - for f in files: - if prog.match(f): - includeFile = prog.findall(f)[0] - includeToPath[includeFile] = root - return includeToPath - -def FindModules(path): - ''' - Build a dict that maps paths to modules. - ''' - pathToModule = dict() - fileProg = re.compile(r"vtk\.module$") - for root, dirs, files in os.walk(path): - for f in files: - if fileProg.match(f): - with open(os.path.join(root, f), "r") as fid: - contents = fid.read() - args = contents.split() - try: - idx = args.index('NAME') - except ValueError: - raise RuntimeError('%s is missing a NAME field' % os.path.join(root, f)) - pathToModule[root] = args[idx + 1] - return pathToModule - -def FindIncludes(path): - ''' - Build a set that contains vtk includes. +import re +from collections import defaultdict +from pathlib import Path + + +def get_program_parameters(): + import argparse + description = 'Generate a find_package(VTK COMPONENTS ...) that lists all modules referenced by a set of files.' + epilogue = ''' +This uses the VTK source folder to determine the modules and headers. +Then the user files/folders are looked at to find the headers being used. +Finally a find_package() is output with the modules you need for + inclusion in your CMakeLists.txt file. + +Note: +1) If include file(s) are not found when building your application. + You may need to search the VTK source to find where the file is. + Then look at contents of vtk.module in that folder and add the + module name to the find_package statement. +2) If linking fails, it usually means that the needed module has not been + built, so you may need to add it to your VTK build and rebuild VTK. +3) More modules than strictly necessary may be included. ''' + parser = argparse.ArgumentParser(description=description, epilog=epilogue, + formatter_class=argparse.RawDescriptionHelpFormatter) + parser.add_argument('vtk_path', help='The path to the VTK source tree.') + parser.add_argument('application', nargs='+', help='Paths to the application files or folders.') + args = parser.parse_args() + return args.vtk_path, args.application + + +def check_paths(vtk_src_dir, application_srcs): + """ + Check that the paths are valid. + + :param vtk_src_dir: The path to the VTK source. + :param application_srcs: The user source files to be scanned for modules. + :return: True if paths, files exist. + """ + ok = True + if not Path(vtk_src_dir).is_dir(): + print('The path to your VTK Source folder does not exist.') + print(Path(vtk_src_dir)) + ok = False + bad_paths = list() + for f in application_srcs: + p = Path(f) + if not (p.is_dir() or p.is_file()): + bad_paths.append(p) + if bad_paths: + print('These application paths or files do not exist.') + for p in bad_paths: + print(p) + ok = False + return ok + + +def find_vtk_modules(vtk_src_dir): + """ + Build a dict of the VTK Module name, library name(if it exists) and any header files. + + :param vtk_src_dir: The path to the VTK source folder + :return: Module name, library name and headers. + """ + vtk_modules = defaultdict(dict) + modules = [f for f in Path(vtk_src_dir).rglob('vtk.module')] + # Includes in the module path + file_patterns = ['vtk*.h', 'vtk*.h.in', 'QVTK*.h', '*QtQuick.h'] + for module in modules: + content = module.read_text() + args = content.split('\n') + # Assuming NAME is always there. + if 'NAME' in args: + name = args[args.index('NAME') + 1].strip() + if 'LIBRARY_NAME' in args: + library_name = args[args.index('LIBRARY_NAME') + 1].strip() + else: + library_name = None + headers = list() + for pattern in file_patterns: + if pattern == 'vtk*.h.in': + # These files will be converted to header files in the build folder of VTK. + headers.extend([f.with_suffix('').name for f in module.parent.glob(pattern)]) + else: + headers.extend([f.name for f in module.parent.glob(pattern)]) + vtk_modules[name]['library_name'] = library_name + vtk_modules[name]['headers'] = headers + return vtk_modules + + +def build_headers_modules(modules): + """ + Make a dictionary whose key is the header filename and value is the module. + + :param modules: The modules. + :return: Headers and their corresponding module. + """ + # The headers should be unique to a module, however we will not assume this. + headers_modules = defaultdict(set) + for k, v in modules.items(): + if 'headers' in v: + for k1 in v['headers']: + headers_modules[k1].add(k) + return headers_modules + + +def find_application_includes(path): + """ + Build a set that contains the vtk includes found in the file. + + :param path: The path to the application file. + :return: The includes that were found. + """ includes = set() - includeProg = re.compile(r"((?:vtk|QVTK).*\.h)") - with open(path, "r") as fid: - contents = fid.read() - incs = includeProg.findall(contents) + include_hdr1 = re.compile(r'((?:vtk|QVTK).*\.h)') + include_hdr2 = re.compile(r'(\w+QtQuick\.h)') + content = path.read_text() + incs = include_hdr1.findall(content) + includes.update(incs) + incs = include_hdr2.findall(content) includes.update(incs) return includes -def FindModuleFiles(path): - ''' - Get a list of module files in the VTK directory. - ''' - moduleFiles = [os.path.join(root, name) - for root, dirs, files in os.walk(path) - for name in files - if name == ("vtk.module")] - return moduleFiles -def MakeFindPackage(modules): - ''' - Make a useful find_package command. - ''' - # Print a useful cmake command - res = "find_package(VTK COMPONENTS\n" - for module in sorted(modules): - res += " " + module.replace('VTK::', '') + "\n" - res += ")" - return res +def generate_find_package(vtk_src_dir, application_srcs): + """ + Generate the find_package statement. + + :param vtk_src_dir: The VTK source folder. + :param application_srcs: A list of application folders and or files. + :return: The find_package statement. + """ + vtk_modules = find_vtk_modules(vtk_src_dir) + # Test to see if VTK source is provided + if len(vtk_modules) == 0: + print(vtk_src_dir, 'is not a VTK source directory. It does not contain any vtk.module files.') + return None + vtk_headers_modules = build_headers_modules(vtk_modules) -from pprint import pprint as pp + valid_extensions = ['.h', '.hxx', '.txx', '.cpp', '.cxx', '.cc'] -def main(vtkSourceDir, sourceFiles): - ''' - Start the program - ''' - # Generate dict's for mapping includes to modules - includesToPaths = IncludesToPaths(vtkSourceDir + "/") - pathsToModules = FindModules(vtkSourceDir + "/") + # Build a set of includes for all command line files + all_includes = set() + for app_src in application_srcs: + p = Path(app_src) + if p.is_file(): + if p.suffix in valid_extensions: + all_includes.update(find_application_includes(p)) + elif p.is_dir(): + paths = list() + for ext in valid_extensions: + paths.extend([f for f in p.rglob('*' + ext) if f.is_file()]) + for path in paths: + all_includes.update(find_application_includes(path)) + if len(all_includes) == 0: + print('No VTK includes found in the application files.') + return None + + # Build a set that contains all modules referenced in the user files. + all_modules = set() + for inc in all_includes: + if inc in vtk_headers_modules: + for m in vtk_headers_modules[inc]: + all_modules.add(m) + + if 'VTK::RenderingCore' in all_modules: + all_modules.add('VTK::RenderingOpenGL2') + all_modules.add('VTK::InteractionStyle') + all_modules.add('VTK::RenderingFreeType') + all_modules.add('VTK::RenderingGL2PSOpenGL2') + all_modules.add('VTK::RenderingContextOpenGL2') + if 'VTK::DomainsChemistry' in all_modules: + all_modules.add('VTK::DomainsChemistryOpenGL2') + if 'VTK::RenderingVolume' in all_modules: + all_modules.add('VTK::RenderingVolumeOpenGL2') + if 'VTK::RenderingContext2D' in all_modules: + all_modules.add('VTK::RenderingContextOpenGL2') + if 'VTK::IOExport' in all_modules: + all_modules.add('VTK::RenderingContextOpenGL2') + all_modules.add('VTK::IOExportOpenGL2') + all_modules.add('VTK::IOExportPDF') + all_modules.add('VTK::RenderingContextOpenGL2') + + res = ['All modules referenced in your files:', 'find_package(VTK', ' COMPONENTS'] + for m in sorted(all_modules): + res.append(' ' * 2 + m.replace('VTK::', '')) + res.append(')') + res.append( + 'Your application code includes ' + str(len(all_modules)) + ' of ' + str( + len(vtk_modules)) + ' vtk modules.') + return res - # Test to see if VTK source is provided - if len(pathsToModules) == 0: - raise IOError, vtkSourceDir +\ - " is not a VTK source directory. It does not contain any vtk.module files." - # Parse the module files making a dictionary of each module and its - # dependencies or what it implements. - moduleFiles = FindModuleFiles(vtkSourceDir + "/") +def main(): + vtk_src_dir, application_srcs = get_program_parameters() + if not check_paths(vtk_src_dir, application_srcs): + return + + res = generate_find_package(vtk_src_dir, application_srcs) + if res: + print('\n'.join(res)) - # Build a set of includes for all command line files - allIncludes = set() - for f in sourceFiles: - if os.path.isfile(f): - allIncludes.update(FindIncludes(f)) - else: - # We have a folder so look through all the files. - for path, dirs, files in os.walk(f): - for fn in files: - allIncludes.update(FindIncludes(os.path.join(path,fn))) - if len(allIncludes) == 0: - raise IOError, f + " does not exist" - - # Build a set that contains all modules referenced in command line files - allModules = set() - for inc in allIncludes: - if inc in includesToPaths: - module = includesToPaths[inc] - if module in pathsToModules: - allModules.add(pathsToModules[includesToPaths[inc]]) - - modules = {'All modules referenced in the files:': allModules, - } - for k, v in modules.iteritems(): - print k - print MakeFindPackage(v) - print "Your application code includes " + str(len(v)) +\ - " of " + str(len(pathsToModules)) + " vtk modules." if __name__ == '__main__': - if len(sys.argv) < 3: - displayHelp() - exit(0) - main(sys.argv[1], sys.argv[2:]) - print('This program is deprecated.') - print('Please consider using FindNeededModules.py instead.') + print('If you have built VTK and\n modules.json is available in the build folder.') + print(' Please consider using FindNeededModules.py instead.') + main() -- GitLab From 5cc4df762ab74e1be994416fb2231c07057cbd15 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Sun, 29 May 2022 00:01:22 -0400 Subject: [PATCH 0279/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index bded5cd05ebc..be8477e3beb4 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220528) +set(VTK_BUILD_VERSION 20220529) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From d2952aeec5c53d3ffcec6fb34b04f726ed04c43d Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Mon, 30 May 2022 00:02:05 -0400 Subject: [PATCH 0280/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index be8477e3beb4..8f03298a2d9c 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220529) +set(VTK_BUILD_VERSION 20220530) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From a4e534c2b9c5a7001e6a4b397ea438adcdeda08a Mon Sep 17 00:00:00 2001 From: Gaspard Thevenon Date: Wed, 25 May 2022 14:39:10 +0200 Subject: [PATCH 0281/1015] Fix compatibility between phong's speculars and two sided lighting --- Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h | 12 ------------ 1 file changed, 12 deletions(-) diff --git a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h index 82bcb4359dc1..5bfc4d8399fe 100644 --- a/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h +++ b/Rendering/VolumeOpenGL2/vtkVolumeShaderComposer.h @@ -1236,10 +1236,6 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n {\ \n nDotL = -nDotL;\ \n }\ - \n if (vDotR < 0.0 && in_twoSidedLighting)\ - \n {\ - \n vDotR = -vDotR;\ - \n }\ \n if (nDotL > 0.0)\ \n {\ \n diffuse = ") + @@ -1361,10 +1357,6 @@ std::string ComputeLightingDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVolumeMa \n diffuse += (df * in_lightDiffuseColor[dirNum]);\ \n vec3 r = normalize(2.0 * nDotL * normal - vertLightDirection);\ \n float rDotV = dot(-viewDirection, r);\ - \n if (rDotV < 0.0 && in_twoSidedLighting)\ - \n {\ - \n rDotV = -rDotV;\ - \n }\ \n if (rDotV > 0.0)\ \n {\ \n float sf = ") + @@ -1531,10 +1523,6 @@ std::string ComputeLightingMultiDeclaration(vtkRenderer* vtkNotUsed(ren), vtkVol \n {\ \n nDotL = -nDotL;\ \n }\ - \n if (vDotR < 0.0 && in_twoSidedLighting)\ - \n {\ - \n vDotR = -vDotR;\ - \n }\ \n if (nDotL > 0.0)\ \n {\ \n diffuse = nDotL * in_diffuse[component] *\ -- GitLab From fead1b8f6c8fbf06b8292da28dad8fd0542307c3 Mon Sep 17 00:00:00 2001 From: Andrew Maclean Date: Tue, 31 May 2022 07:51:15 +1000 Subject: [PATCH 0282/1015] Specify python3 --- Utilities/Maintenance/WhatModulesVTK.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Utilities/Maintenance/WhatModulesVTK.py b/Utilities/Maintenance/WhatModulesVTK.py index a60a08cd4bce..314c5ef73c24 100755 --- a/Utilities/Maintenance/WhatModulesVTK.py +++ b/Utilities/Maintenance/WhatModulesVTK.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python3 import re from collections import defaultdict -- GitLab From e055f43621229ce77b867276c52ee018119ac9d2 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Tue, 31 May 2022 00:01:34 -0400 Subject: [PATCH 0283/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 8f03298a2d9c..9a8797a0b6be 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220530) +set(VTK_BUILD_VERSION 20220531) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From eed26c0aaff618c032d6cccf2178756d665ec228 Mon Sep 17 00:00:00 2001 From: Lucas Givord Date: Mon, 30 May 2022 11:40:28 +0200 Subject: [PATCH 0284/1015] Add padding control for each chart inside the scatter plot --- .../Data/Baseline/TestScatterPlotMatrix.png.sha512 | 2 +- .../Baseline/TestScatterPlotMatrixVehicles.png.sha512 | 2 +- .../Baseline/TestScatterPlotMatrixVisible.png.sha512 | 2 +- Charts/Core/vtkChartMatrix.cxx | 9 +++++++++ Charts/Core/vtkChartMatrix.h | 10 ++++++++++ Charts/Core/vtkScatterPlotMatrix.cxx | 8 +++++--- .../TestScatterPlotMatrixVehiclesDensity.png.sha512 | 2 +- 7 files changed, 28 insertions(+), 7 deletions(-) diff --git a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrix.png.sha512 b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrix.png.sha512 index 3efcf0e32ec5..476cc78bbb7d 100644 --- a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrix.png.sha512 +++ b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrix.png.sha512 @@ -1 +1 @@ -7e593c37e0a0509689be08ed5cadfe06d2f536759e6a6bf8c4f5d2974b3be57a02064d42bcd21355fcef4fa5ba4f22c244290d021447cbe7b5eff45dc2120e84 +36bcf298065b6fa82f7bd60a0afc9de93312ab57436222a5338e1aea01db9b42df2d7dd0a36a7ab8bd791ca591e34373da676509f3128edc88fe68291ea6cd90 diff --git a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVehicles.png.sha512 b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVehicles.png.sha512 index ad5d31f16c7c..6d2e5a6ec38a 100644 --- a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVehicles.png.sha512 +++ b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVehicles.png.sha512 @@ -1 +1 @@ -6ce1f4eff70a1d979dfa4eb401942a3122dd2f2d5a2f953439756e3e3e3dc1545ede8ab938e018bc3d965d38195be8b0fffbcb21e5fc303a5157d90e1d397001 +4754a0001d030fd80954fff9b44485b599086474edc78164a468828af88c90ca0fc1ff2218a52d72a4e919316eabfff81bf0a0bf7e06e6e40314a430ab8e9e47 diff --git a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVisible.png.sha512 b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVisible.png.sha512 index fb6601c3c8d9..0a88c75f98e5 100644 --- a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVisible.png.sha512 +++ b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVisible.png.sha512 @@ -1 +1 @@ -a10522c130723d9a13df9e577a0d6fe68603138726478c67865b4240da2ddea8d1624b694be31a94133485f6e7dcff6336736b4685a6f31fea322457e5eee374 +6264bd26240434ad9d6c65ba8415aa4147d7e317a13beb17e2643745ccc3518085096b766486a0d7b9a9de3d51d7186136bb2f081da6b0d1fd439243b414f582 diff --git a/Charts/Core/vtkChartMatrix.cxx b/Charts/Core/vtkChartMatrix.cxx index 119162e3797b..71a096dcb8b7 100644 --- a/Charts/Core/vtkChartMatrix.cxx +++ b/Charts/Core/vtkChartMatrix.cxx @@ -65,6 +65,7 @@ vtkChartMatrix::vtkChartMatrix() this->Borders[vtkAxis::BOTTOM] = 40; this->Borders[vtkAxis::RIGHT] = 50; this->Borders[vtkAxis::TOP] = 40; + this->Padding = 0.05; this->LayoutIsDirty = true; } @@ -334,6 +335,14 @@ void vtkChartMatrix::SetGutterY(float value) this->LayoutIsDirty = true; } +//------------------------------------------------------------------------------ +void vtkChartMatrix::SetPadding(const float& padding) +{ + this->Padding = padding; + this->LayoutIsDirty = true; + this->Modified(); +} + //------------------------------------------------------------------------------ void vtkChartMatrix::SetSpecificResize(const vtkVector2i& index, const vtkVector2f& resize) { diff --git a/Charts/Core/vtkChartMatrix.h b/Charts/Core/vtkChartMatrix.h index 986b28b5aa82..c16069a9f43f 100644 --- a/Charts/Core/vtkChartMatrix.h +++ b/Charts/Core/vtkChartMatrix.h @@ -96,6 +96,13 @@ public: void SetGutterY(float value); ///@} + ///@{ + /** + * Set the gutter that should be left between the charts in the matrix. + */ + virtual void SetPadding(const float& padding); + ///@} + ///@{ /** * Set a specific resize that will move the bottom left point of a chart. @@ -279,6 +286,9 @@ protected: // The gutter between each chart. vtkVector2f Gutter; + + // The padding used inside each chart + float Padding; std::map SpecificResize; int Borders[4]; bool LayoutIsDirty; diff --git a/Charts/Core/vtkScatterPlotMatrix.cxx b/Charts/Core/vtkScatterPlotMatrix.cxx index 2d5dac2ffbc4..b38eff953b92 100644 --- a/Charts/Core/vtkScatterPlotMatrix.cxx +++ b/Charts/Core/vtkScatterPlotMatrix.cxx @@ -1309,10 +1309,11 @@ void vtkScatterPlotMatrix::UpdateAxes() { PIMPL::ColumnSetting settings; // Apply a little padding either side of the ranges. - range[0] = range[0] - (0.01 * range[0]); - range[1] = range[1] + (0.01 * range[1]); + float padding = this->Padding * (range[1] - range[0]); + range[0] = range[0] - padding; + range[1] = range[1] + padding; + axis->SetUnscaledRange(range); - axis->AutoScale(); settings.min = axis->GetUnscaledMinimum(); settings.max = axis->GetUnscaledMaximum(); settings.nTicks = axis->GetNumberOfTicks(); @@ -1437,6 +1438,7 @@ void vtkScatterPlotMatrix::UpdateLayout() { // This big plot in the top-right this->Private->BigChart = this->GetChart(pos); + this->ApplyAxisSetting(this->Private->BigChart, column, row); this->Private->BigChartPos = pos; this->Private->BigChart->SetAnnotationLink(this->Private->Link); this->Private->BigChart->AddObserver(vtkCommand::SelectionChangedEvent, this, diff --git a/Filters/OpenTURNS/Testing/Data/Baseline/TestScatterPlotMatrixVehiclesDensity.png.sha512 b/Filters/OpenTURNS/Testing/Data/Baseline/TestScatterPlotMatrixVehiclesDensity.png.sha512 index f61f3a363896..fed3840b6dec 100644 --- a/Filters/OpenTURNS/Testing/Data/Baseline/TestScatterPlotMatrixVehiclesDensity.png.sha512 +++ b/Filters/OpenTURNS/Testing/Data/Baseline/TestScatterPlotMatrixVehiclesDensity.png.sha512 @@ -1 +1 @@ -0df81dff6fc2f41f128240b8beec09eec59b4cc8cdf3b85a5fe9749a7eb43e365adffd315ad6109f740c50f5b20373151564307319579faf53b6150bf69141d0 +8e3a4b4416ef23894913ccba0ce31be6e2b48a2174a2fc7450359c1ad427d5b4a17907f5a52e0896457f98b74ac7e953b6a3062debfca57d47842ae77aa0d103 -- GitLab From e7b87d3fdab9e1ced25af7dad153e499a9163140 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Tue, 31 May 2022 13:02:01 +0200 Subject: [PATCH 0285/1015] Add a vtkInteractorEventRecorder::Clear Add a vtkInteractorEventRecorder::Clear and improve vtkInteractorEventRecorder doc --- Rendering/Core/vtkInteractorEventRecorder.cxx | 22 +++++++++++++++++++ Rendering/Core/vtkInteractorEventRecorder.h | 11 +++++++++- 2 files changed, 32 insertions(+), 1 deletion(-) diff --git a/Rendering/Core/vtkInteractorEventRecorder.cxx b/Rendering/Core/vtkInteractorEventRecorder.cxx index eaa894b718d6..6f9debb5fe3c 100644 --- a/Rendering/Core/vtkInteractorEventRecorder.cxx +++ b/Rendering/Core/vtkInteractorEventRecorder.cxx @@ -221,6 +221,28 @@ void vtkInteractorEventRecorder::Stop() this->Modified(); } +//------------------------------------------------------------------------------ +void vtkInteractorEventRecorder::Clear() +{ + this->Stop(); + + if (this->InputStream) + { + this->InputStream->clear(); + delete this->InputStream; + this->InputStream = nullptr; + } + + if (this->OutputStream) + { + delete this->OutputStream; + this->OutputStream = nullptr; + } + + this->Modified(); +} + +//------------------------------------------------------------------------------ void vtkInteractorEventRecorder::Rewind() { if (!this->InputStream) // need to already have an open file diff --git a/Rendering/Core/vtkInteractorEventRecorder.h b/Rendering/Core/vtkInteractorEventRecorder.h index b1ed92f0f96c..7272faa2379e 100644 --- a/Rendering/Core/vtkInteractorEventRecorder.h +++ b/Rendering/Core/vtkInteractorEventRecorder.h @@ -69,6 +69,7 @@ public: ///@{ /** * Set/Get the name of a file events should be written to/from. + * Will be ignored once record/play has been called. */ vtkSetFilePathMacro(FileName); vtkGetFilePathMacro(FileName); @@ -77,12 +78,14 @@ public: /** * Invoke this method to begin recording events. The events will be * recorded to the filename indicated. + * Once record has been called once, filename will be ignored. */ void Record(); /** * Invoke this method to begin playing events from the current position. * The events will be played back from the filename indicated. + * Once play has been called once, filename will be ignored. */ void Play(); @@ -92,7 +95,13 @@ public: void Stop(); /** - * Rewind to the beginning of the file. + * Invoke this method to clear recording/playing stream and be able to open + * another file using the same recorder. + */ + void Clear(); + + /** + * Rewind the play stream to the beginning of the file. */ void Rewind(); -- GitLab From b576a06c601d40b0e2cec821606085511e32fa1a Mon Sep 17 00:00:00 2001 From: Lucas Gandel Date: Wed, 13 Apr 2022 20:53:36 +0200 Subject: [PATCH 0286/1015] Fix vtkOpenXRManager singleton destructor not being called Instantiate vtkOpenXRManager on the stack to have its destructor called automatically when the program ends. --- Rendering/OpenXR/vtkOpenXRCamera.cxx | 8 +- Rendering/OpenXR/vtkOpenXRManager.cxx | 98 ++++++++----------- Rendering/OpenXR/vtkOpenXRManager.h | 23 ++--- Rendering/OpenXR/vtkOpenXRRenderWindow.cxx | 43 ++++---- .../vtkOpenXRRenderWindowInteractor.cxx | 36 +++---- 5 files changed, 93 insertions(+), 115 deletions(-) diff --git a/Rendering/OpenXR/vtkOpenXRCamera.cxx b/Rendering/OpenXR/vtkOpenXRCamera.cxx index 691a1c111dbb..16bff60ec4ff 100644 --- a/Rendering/OpenXR/vtkOpenXRCamera.cxx +++ b/Rendering/OpenXR/vtkOpenXRCamera.cxx @@ -52,7 +52,7 @@ void vtkOpenXRCamera::UpdateWorldToEyeMatrices(vtkRenderer* ren) this->WorldToPhysicalMatrix->Invert(); // at this point it is now correctly worldToPhysical - const XrPosef* xrPose = vtkOpenXRManager::GetInstance()->GetViewPose(LEFT_EYE); + const XrPosef* xrPose = vtkOpenXRManager::GetInstance().GetViewPose(LEFT_EYE); if (xrPose == nullptr) { vtkErrorMacro(<< "No pose for left eye, cannot update view transform"); @@ -64,7 +64,7 @@ void vtkOpenXRCamera::UpdateWorldToEyeMatrices(vtkRenderer* ren) vtkMatrix4x4::Multiply4x4( this->PhysicalToLeftEyeMatrix, this->WorldToPhysicalMatrix, this->WorldToLeftEyeMatrix); - xrPose = vtkOpenXRManager::GetInstance()->GetViewPose(RIGHT_EYE); + xrPose = vtkOpenXRManager::GetInstance().GetViewPose(RIGHT_EYE); if (xrPose == nullptr) { vtkErrorMacro(<< "No pose for right eye, cannot update view transform"); @@ -86,7 +86,7 @@ void vtkOpenXRCamera::UpdateEyeToProjectionMatrices(vtkRenderer* ren) double znear = this->ClippingRange[0] / scale; double zfar = this->ClippingRange[1] / scale; - XrFovf const* xrFov = vtkOpenXRManager::GetInstance()->GetProjectionFov(LEFT_EYE); + XrFovf const* xrFov = vtkOpenXRManager::GetInstance().GetProjectionFov(LEFT_EYE); if (xrFov == nullptr) { vtkErrorMacro(<< "No fov for left eye, cannot update projection matrix"); @@ -94,7 +94,7 @@ void vtkOpenXRCamera::UpdateEyeToProjectionMatrices(vtkRenderer* ren) } vtkOpenXRUtilities::CreateProjectionFov(this->LeftEyeToProjectionMatrix, *xrFov, znear, zfar); - xrFov = vtkOpenXRManager::GetInstance()->GetProjectionFov(RIGHT_EYE); + xrFov = vtkOpenXRManager::GetInstance().GetProjectionFov(RIGHT_EYE); if (xrFov == nullptr) { vtkErrorMacro(<< "No fov for right eye, cannot update projection matrix"); diff --git a/Rendering/OpenXR/vtkOpenXRManager.cxx b/Rendering/OpenXR/vtkOpenXRManager.cxx index bc9b198eea7d..99f74e97a07d 100644 --- a/Rendering/OpenXR/vtkOpenXRManager.cxx +++ b/Rendering/OpenXR/vtkOpenXRManager.cxx @@ -39,82 +39,65 @@ struct vtkXVisualInfo : public XVisualInfo #define VTK_CHECK_NULL_XRHANDLE(handle, msg) \ if (handle == XR_NULL_HANDLE) \ { \ - vtkErrorMacro(<< msg << " is a null handle."); \ + vtkErrorWithObjectMacro(nullptr, << msg << " is a null handle."); \ return false; \ } -vtkStandardNewMacro(vtkOpenXRManager); - -vtkOpenXRManager* vtkOpenXRManager::UniqueInstance = nullptr; - -//---------------------------------------------------------------------------- -vtkOpenXRManager* vtkOpenXRManager::GetInstance() -{ - if (!vtkOpenXRManager::UniqueInstance) - { - vtkOpenXRManager::UniqueInstance = new vtkOpenXRManager(); - } - - return vtkOpenXRManager::UniqueInstance; -} - //------------------------------------------------------------------------------ bool vtkOpenXRManager::Initialize(vtkOpenGLRenderWindow* helperWindow) { - this->DebugOn(); - if (!this->CreateInstance()) { - vtkWarningMacro("Initialize failed to CreateInstance"); + vtkWarningWithObjectMacro(nullptr, "Initialize failed to CreateInstance"); return false; } // Create the SubactionPaths (left / right hand and head) if (!this->CreateSubactionPaths()) { - vtkWarningMacro("Initialize failed to CreateSubactionPaths"); + vtkWarningWithObjectMacro(nullptr, "Initialize failed to CreateSubactionPaths"); return false; } if (!this->CreateSystem()) { - vtkWarningMacro("Initialize failed to CreateSystem"); + vtkWarningWithObjectMacro(nullptr, "Initialize failed to CreateSystem"); return false; } if (!this->CheckGraphicsRequirements()) { - vtkWarningMacro("Initialize failed in CheckGraphicsRequirements"); + vtkWarningWithObjectMacro(nullptr, "Initialize failed in CheckGraphicsRequirements"); return false; } if (!this->CreateGraphicsBinding(helperWindow)) { - vtkWarningMacro("Initialize failed to CreateGraphicsBinding"); + vtkWarningWithObjectMacro(nullptr, "Initialize failed to CreateGraphicsBinding"); return false; } if (!this->CreateSession()) { - vtkWarningMacro("Initialize failed to CreateSession"); + vtkWarningWithObjectMacro(nullptr, "Initialize failed to CreateSession"); return false; } if (!this->CreateReferenceSpace()) { - vtkWarningMacro("Initialize failed to CreateReferenceSpace"); + vtkWarningWithObjectMacro(nullptr, "Initialize failed to CreateReferenceSpace"); return false; } if (!this->CreateSwapchains()) { - vtkWarningMacro("Initialize failed to CreateSwapChains"); + vtkWarningWithObjectMacro(nullptr, "Initialize failed to CreateSwapChains"); return false; } if (!this->LoadControllerModels()) { - vtkWarningMacro("Initialize failed to LoadController Models"); + vtkWarningWithObjectMacro(nullptr, "Initialize failed to LoadController Models"); return false; } @@ -232,8 +215,9 @@ bool vtkOpenXRManager::WaitAndBeginFrame() if (viewCountOutput != viewCount) { - vtkWarningMacro(<< "ViewCountOutput (" << viewCountOutput << ") is different than ViewCount (" - << viewCount << ") !"); + vtkWarningWithObjectMacro(nullptr, << "ViewCountOutput (" << viewCountOutput + << ") is different than ViewCount (" << viewCount + << ") !"); } } @@ -293,14 +277,16 @@ bool vtkOpenXRManager::PrepareRendering( { if (colorSwapchain.Width != depthSwapchain.Width) { - vtkErrorMacro(<< "Color swapchain width (" << colorSwapchain.Width - << ") differs from depth swapchain width (" << depthSwapchain.Width << ")."); + vtkErrorWithObjectMacro(nullptr, << "Color swapchain width (" << colorSwapchain.Width + << ") differs from depth swapchain width (" + << depthSwapchain.Width << ")."); return false; } if (colorSwapchain.Height != depthSwapchain.Height) { - vtkErrorMacro(<< "Color swapchain height (" << colorSwapchain.Height - << ") differs from depth swapchain height (" << depthSwapchain.Height << ")."); + vtkErrorWithObjectMacro(nullptr, << "Color swapchain height (" << colorSwapchain.Height + << ") differs from depth swapchain height (" + << depthSwapchain.Height << ")."); return false; } } @@ -429,7 +415,7 @@ bool vtkOpenXRManager::XrCheckError(const XrResult& result, const std::string& m { char xRResultString[XR_MAX_RESULT_STRING_SIZE]; xrResultToString(this->Instance, result, xRResultString); - vtkErrorMacro(<< message << " [" << xRResultString << "]."); + vtkErrorWithObjectMacro(nullptr, << message << " [" << xRResultString << "]."); return false; } return true; @@ -442,7 +428,7 @@ bool vtkOpenXRManager::XrCheckWarn(const XrResult& result, const std::string& me { char xRResultString[XR_MAX_RESULT_STRING_SIZE]; xrResultToString(this->Instance, result, xRResultString); - vtkWarningMacro(<< message << " [" << xRResultString << "]."); + vtkWarningWithObjectMacro(nullptr, << message << " [" << xRResultString << "]."); return false; } return true; @@ -492,10 +478,6 @@ void vtkOpenXRManager::PrintSystemProperties(XrSystemProperties* systemPropertie { XrSystemHandTrackingPropertiesEXT* ht = static_cast(systemProperties->next); - if (!this->Debug) - { - (void)ht; - } std::cout << "\tHand Tracking : " << ht->supportsHandTracking << std::endl; } next = next->next; @@ -537,10 +519,6 @@ void vtkOpenXRManager::PrintViewConfigViewInfo( for (size_t i = 0; i < viewconfigViews.size(); ++i) { const auto& vcfgv = viewconfigViews[i]; - if (!this->Debug) - { - (void)vcfgv; - } std::cout << "View Configuration View " << i << std::endl; std::cout << "\tResolution : Recommended: " << vcfgv.recommendedImageRectWidth << "x" << vcfgv.recommendedImageRectHeight << ", Max: " << vcfgv.maxImageRectWidth << "x" @@ -661,7 +639,7 @@ bool vtkOpenXRManager::CreateInstance() // For instance, only OpenGL extension is supported so is mandatory if (!this->HasOpenGLExtension) { - vtkErrorMacro(<< "OpenGL extension is not supported. Aborting."); + vtkErrorWithObjectMacro(nullptr, << "OpenGL extension is not supported. Aborting."); return false; } @@ -778,7 +756,8 @@ bool vtkOpenXRManager::CreateSystem() "Failed to get environment blend modes count"); if (count == 0) { - vtkErrorMacro("A system must support at least one environment blend mode."); + vtkErrorWithObjectMacro( + nullptr, "A system must support at least one environment blend mode."); } std::vector environmentBlendModes(count); @@ -870,7 +849,7 @@ bool vtkOpenXRManager::CreateGraphicsBinding(vtkOpenGLRenderWindow* helperWindow graphicsBindingGLWin32->hGLRC = wglGetCurrentContext(); #else - vtkErrorMacro(<< "Only X11 and Win32 are supported at the moment."); + vtkErrorWithObjectMacro(nullptr, << "Only X11 and Win32 are supported at the moment."); return false; #endif @@ -976,8 +955,8 @@ std::tuple vtkOpenXRManager::SelectSwapchainPixelFormats() std::begin(applicationSupportedFormats), std::end(applicationSupportedFormats)); if (found == std::end(runtimePreferredFormats)) { - vtkErrorMacro(<< "No runtime swapchain " << formatName - << " format in the list is supported."); + vtkErrorWithObjectMacro( + nullptr, << "No runtime swapchain " << formatName << " format in the list is supported."); return (int64_t)-1; } return *found; @@ -1102,8 +1081,8 @@ bool vtkOpenXRManager::CreateConfigViews() "Failed to get view configuration view count!"); if (viewCount != this->StereoViewCount) { - vtkWarningMacro(<< "StereoViewCount (" << this->StereoViewCount - << ") is different than viewCount (" << viewCount << ")"); + vtkWarningWithObjectMacro(nullptr, << "StereoViewCount (" << this->StereoViewCount + << ") is different than viewCount (" << viewCount << ")"); } this->RenderResources->ConfigViews.resize(viewCount, { XR_TYPE_VIEW_CONFIGURATION_VIEW }); @@ -1148,13 +1127,13 @@ bool vtkOpenXRManager::SelectActiveActionSet(unsigned int index) { if (this->ActionSets.size() == 0) { - vtkErrorMacro(<< "An action set must be created prior to select one."); + vtkErrorWithObjectMacro(nullptr, << "An action set must be created prior to select one."); return false; } if (index >= this->ActionSets.size()) { - vtkWarningMacro(<< "The selected action set at index : " << index - << " does not exist. Pick the first one"); + vtkWarningWithObjectMacro(nullptr, + << "The selected action set at index : " << index << " does not exist. Pick the first one"); index = 0; } @@ -1241,9 +1220,9 @@ bool vtkOpenXRManager::CreateOneAction( if (!this->CreateOneActionSpace(actionT.Action, this->SubactionPaths[hand], vtkOpenXRUtilities::GetIdentityPose(), actionT.PoseSpaces[hand])) { - vtkErrorMacro(<< "Failed to create pose action space for " - << (hand == vtkOpenXRManager::ControllerIndex::Left ? "left" : "right") - << " hand"); + vtkErrorWithObjectMacro(nullptr, + << "Failed to create pose action space for " + << (hand == vtkOpenXRManager::ControllerIndex::Left ? "left" : "right") << " hand"); return false; }; } @@ -1407,9 +1386,10 @@ bool vtkOpenXRManager::ApplyVibration(const Action_t& actionT, const int hand, if (actionT.ActionType != XR_ACTION_TYPE_VIBRATION_OUTPUT) { - vtkErrorMacro(<< "vtkOpenXRManager::ApplyVibration must be called for an action of type " - "XR_ACTION_TYPE_VIBRATION_OUTPUT, not a " - << vtkOpenXRUtilities::GetActionTypeAsString(actionT.ActionType)); + vtkErrorWithObjectMacro( + nullptr, << "vtkOpenXRManager::ApplyVibration must be called for an action of type " + "XR_ACTION_TYPE_VIBRATION_OUTPUT, not a " + << vtkOpenXRUtilities::GetActionTypeAsString(actionT.ActionType)); return false; } diff --git a/Rendering/OpenXR/vtkOpenXRManager.h b/Rendering/OpenXR/vtkOpenXRManager.h index 93af7f8b7fb8..9acda950808a 100644 --- a/Rendering/OpenXR/vtkOpenXRManager.h +++ b/Rendering/OpenXR/vtkOpenXRManager.h @@ -17,16 +17,18 @@ * @brief Singleton class that holds a collection of utility functions * and member variables to communicate with the OpenXR runtime * - * vtkOpenXRManager + * vtkOpenXRManager is not a vtkObject, the singleton unique instance gets + * allocated on the stack the first time vtkOpenXRManager::GetInstance() is + * called. */ #ifndef vtkOpenXRManager_h #define vtkOpenXRManager_h -#include "vtkObject.h" #include "vtkRenderingOpenXRModule.h" // needed for exports #include "vtkOpenXR.h" +#include "vtkSystemIncludes.h" #include #include @@ -35,17 +37,18 @@ class vtkOpenGLRenderWindow; -class VTKRENDERINGOPENXR_EXPORT vtkOpenXRManager : public vtkObject +class VTKRENDERINGOPENXR_EXPORT vtkOpenXRManager { public: - static vtkOpenXRManager* New(); - vtkTypeMacro(vtkOpenXRManager, vtkObject); - //@{ /** - * Return the singleton instance with no reference counting. + * Return the singleton instance. */ - static vtkOpenXRManager* GetInstance(); + static vtkOpenXRManager& GetInstance() + { + static vtkOpenXRManager UniqueInstance; + return UniqueInstance; + } //@} //@{ @@ -349,7 +352,7 @@ public: protected: vtkOpenXRManager() = default; - ~vtkOpenXRManager() override = default; + ~vtkOpenXRManager() = default; //@{ /** @@ -587,8 +590,6 @@ protected: private: vtkOpenXRManager(const vtkOpenXRManager&) = delete; void operator=(const vtkOpenXRManager&) = delete; - - static vtkOpenXRManager* UniqueInstance; }; #endif diff --git a/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx b/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx index 7b9f9c07884b..f27054f7d2b2 100644 --- a/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx +++ b/Rendering/OpenXR/vtkOpenXRRenderWindow.cxx @@ -81,12 +81,9 @@ vtkRenderWindowInteractor* vtkOpenXRRenderWindow::MakeRenderWindowInteractor() //------------------------------------------------------------------------------ bool vtkOpenXRRenderWindow::GetSizeFromAPI() { - vtkOpenXRManager* xrManager = vtkOpenXRManager::GetInstance(); - if (!xrManager) - { - return false; - } - std::tie(this->Size[0], this->Size[1]) = xrManager->GetRecommandedImageRectSize(); + vtkOpenXRManager& xrManager = vtkOpenXRManager::GetInstance(); + + std::tie(this->Size[0], this->Size[1]) = xrManager.GetRecommandedImageRectSize(); return true; } @@ -121,8 +118,8 @@ void vtkOpenXRRenderWindow::Initialize() this->MakeCurrent(); this->OpenGLInit(); - vtkOpenXRManager* xrManager = vtkOpenXRManager::GetInstance(); - if (!xrManager->Initialize(this->HelperWindow)) + vtkOpenXRManager& xrManager = vtkOpenXRManager::GetInstance(); + if (!xrManager.Initialize(this->HelperWindow)) { // Set to false because the above init of the HelperWindow sets it to true this->Initialized = false; @@ -133,11 +130,11 @@ void vtkOpenXRRenderWindow::Initialize() // Create one framebuffer per view this->CreateFramebuffers(); - std::tie(this->Size[0], this->Size[1]) = xrManager->GetRecommandedImageRectSize(); + std::tie(this->Size[0], this->Size[1]) = xrManager.GetRecommandedImageRectSize(); vtkDebugMacro(<< "Size : " << this->Size[0] << ", " << this->Size[1]); - std::string strWindowTitle = "VTK - " + xrManager->GetOpenXRPropertiesAsString(); + std::string strWindowTitle = "VTK - " + xrManager.GetOpenXRPropertiesAsString(); this->SetWindowName(strWindowTitle.c_str()); this->Initialized = true; @@ -150,7 +147,7 @@ void vtkOpenXRRenderWindow::Finalize() { this->ReleaseGraphicsResources(this); - vtkOpenXRManager::GetInstance()->Finalize(); + vtkOpenXRManager::GetInstance().Finalize(); if (this->HelperWindow && this->HelperWindow->GetGenericContext()) { @@ -161,9 +158,9 @@ void vtkOpenXRRenderWindow::Finalize() //------------------------------------------------------------------------------ void vtkOpenXRRenderWindow::Render() { - vtkOpenXRManager* xrManager = vtkOpenXRManager::GetInstance(); + vtkOpenXRManager& xrManager = vtkOpenXRManager::GetInstance(); - if (!xrManager->WaitAndBeginFrame()) + if (!xrManager.WaitAndBeginFrame()) { return; } @@ -173,7 +170,7 @@ void vtkOpenXRRenderWindow::Render() this->UpdateHMDMatrixPose(); } - if (xrManager->GetShouldRenderCurrentFrame()) + if (xrManager.GetShouldRenderCurrentFrame()) { // Start rendering this->Superclass::Render(); @@ -183,7 +180,7 @@ void vtkOpenXRRenderWindow::Render() vtkWarningMacro(<< "Not rendered"); } - xrManager->EndFrame(); + xrManager.EndFrame(); } //------------------------------------------------------------------------------ @@ -196,7 +193,7 @@ void vtkOpenXRRenderWindow::UpdateHMDMatrixPose() // use left eye as stand in for HMD right now // todo add event for head pose - const XrPosef* xrPose = vtkOpenXRManager::GetInstance()->GetViewPose(LEFT_EYE); + const XrPosef* xrPose = vtkOpenXRManager::GetInstance().GetViewPose(LEFT_EYE); if (xrPose == nullptr) { vtkErrorMacro(<< "No pose for left eye"); @@ -255,10 +252,10 @@ void vtkOpenXRRenderWindow::StereoRenderComplete() //------------------------------------------------------------------------------ void vtkOpenXRRenderWindow::RenderOneEye(const uint32_t eye) { - vtkOpenXRManager* xrManager = vtkOpenXRManager::GetInstance(); + vtkOpenXRManager& xrManager = vtkOpenXRManager::GetInstance(); FramebufferDesc& eyeFramebufferDesc = this->FramebufferDescs[eye]; - if (!xrManager->PrepareRendering( + if (!xrManager.PrepareRendering( eye, eyeFramebufferDesc.ResolveColorTextureId, eyeFramebufferDesc.ResolveDepthTextureId)) { return; @@ -275,7 +272,7 @@ void vtkOpenXRRenderWindow::RenderOneEye(const uint32_t eye) this->RenderFramebuffer(eyeFramebufferDesc); // Release this swapchain image - xrManager->ReleaseSwapchainImage(eye); + xrManager.ReleaseSwapchainImage(eye); } //------------------------------------------------------------------------------ @@ -322,8 +319,8 @@ bool vtkOpenXRRenderWindow::CreateFramebuffers(uint32_t vtkNotUsed(viewCount)) // So we call glFrameBufferTexture2D at each frame with the texture provided by // the runtime // That's why we only generate framebuffers here - vtkOpenXRManager* xrManager = vtkOpenXRManager::GetInstance(); - uint32_t viewCount = xrManager->GetViewCount(); + vtkOpenXRManager& xrManager = vtkOpenXRManager::GetInstance(); + uint32_t viewCount = xrManager.GetViewCount(); this->FramebufferDescs.resize(viewCount); for (size_t i = 0; i < viewCount; ++i) { @@ -342,7 +339,7 @@ bool vtkOpenXRRenderWindow::BindTextureToFramebuffer(FramebufferDesc& framebuffe glFramebufferTexture2D( GL_FRAMEBUFFER, GL_COLOR_ATTACHMENT0, GL_TEXTURE_2D, framebufferDesc.ResolveColorTextureId, 0); - if (vtkOpenXRManager::GetInstance()->IsDepthExtensionSupported()) + if (vtkOpenXRManager::GetInstance().IsDepthExtensionSupported()) { glFramebufferTexture2D( GL_FRAMEBUFFER, GL_DEPTH_ATTACHMENT, GL_TEXTURE_2D, framebufferDesc.ResolveDepthTextureId, 0); @@ -373,7 +370,7 @@ void vtkOpenXRRenderWindow::RenderFramebuffer(FramebufferDesc& framebufferDesc) glBlitFramebuffer(0, 0, this->Size[0], this->Size[1], 0, 0, this->Size[0], this->Size[1], GL_COLOR_BUFFER_BIT, GL_LINEAR); - if (vtkOpenXRManager::GetInstance()->IsDepthExtensionSupported()) + if (vtkOpenXRManager::GetInstance().IsDepthExtensionSupported()) { glBlitFramebuffer(0, 0, this->Size[0], this->Size[1], 0, 0, this->Size[0], this->Size[1], GL_DEPTH_BUFFER_BIT, GL_NEAREST); diff --git a/Rendering/OpenXR/vtkOpenXRRenderWindowInteractor.cxx b/Rendering/OpenXR/vtkOpenXRRenderWindowInteractor.cxx index f0bd358aa1d7..b0cbfbfce954 100644 --- a/Rendering/OpenXR/vtkOpenXRRenderWindowInteractor.cxx +++ b/Rendering/OpenXR/vtkOpenXRRenderWindowInteractor.cxx @@ -63,7 +63,7 @@ void vtkOpenXRRenderWindowInteractor::DoOneEvent( { this->ProcessXrEvents(); - if (this->Done || !vtkOpenXRManager::GetInstance()->IsSessionRunning()) + if (this->Done || !vtkOpenXRManager::GetInstance().IsSessionRunning()) { return; } @@ -88,10 +88,10 @@ void vtkOpenXRRenderWindowInteractor::DoOneEvent( //------------------------------------------------------------------------------ void vtkOpenXRRenderWindowInteractor::ProcessXrEvents() { - vtkOpenXRManager* xrManager = vtkOpenXRManager::GetInstance(); + vtkOpenXRManager& xrManager = vtkOpenXRManager::GetInstance(); XrEventDataBuffer eventData{}; - while (xrManager->PollEvent(eventData)) + while (xrManager.PollEvent(eventData)) { switch (eventData.type) { @@ -119,7 +119,7 @@ void vtkOpenXRRenderWindowInteractor::ProcessXrEvents() { const auto stateEvent = *reinterpret_cast(&eventData); - if (stateEvent.session != xrManager->GetSession()) + if (stateEvent.session != xrManager.GetSession()) { vtkErrorMacro(<< "OpenXR event [XR_TYPE_EVENT_DATA_SESSION_STATE_CHANGED] : session is " "different than this->Session. Aborting."); @@ -131,7 +131,7 @@ void vtkOpenXRRenderWindowInteractor::ProcessXrEvents() case XR_SESSION_STATE_READY: { vtkDebugMacro(<< "OpenXR event [XR_SESSION_STATE_READY] : Begin session"); - xrManager->BeginSession(); + xrManager.BeginSession(); break; } case XR_SESSION_STATE_STOPPING: @@ -171,8 +171,8 @@ void vtkOpenXRRenderWindowInteractor::ProcessXrEvents() for (uint32_t hand : { vtkOpenXRManager::ControllerIndex::Left, vtkOpenXRManager::ControllerIndex::Right }) { - if (!xrManager->XrCheckWarn(xrGetCurrentInteractionProfile(xrManager->GetSession(), - xrManager->GetSubactionPaths()[hand], &state), + if (!xrManager.XrCheckWarn(xrGetCurrentInteractionProfile(xrManager.GetSession(), + xrManager.GetSubactionPaths()[hand], &state), "Failed to get interaction profile for hand " + hand)) { continue; @@ -182,8 +182,8 @@ void vtkOpenXRRenderWindowInteractor::ProcessXrEvents() uint32_t strLength; char profileString[XR_MAX_PATH_LENGTH]; - if (!xrManager->XrCheckWarn( - xrPathToString(xrManager->GetXrRuntimeInstance(), interactionProfile, + if (!xrManager.XrCheckWarn( + xrPathToString(xrManager.GetXrRuntimeInstance(), interactionProfile, XR_MAX_PATH_LENGTH, &strLength, profileString), "Failed to get interaction profile path string for hand " + hand)) { @@ -219,7 +219,7 @@ void vtkOpenXRRenderWindowInteractor::ConvertOpenXRPoseToWorldCoordinates(const void vtkOpenXRRenderWindowInteractor::PollXrActions() { // Update the action states by syncing using the active action set - vtkOpenXRManager::GetInstance()->SyncActions(); + vtkOpenXRManager::GetInstance().SyncActions(); // Iterate over all actions and update their data MapAction::iterator it; @@ -231,7 +231,7 @@ void vtkOpenXRRenderWindowInteractor::PollXrActions() for (uint32_t hand : { vtkOpenXRManager::ControllerIndex::Left, vtkOpenXRManager::ControllerIndex::Right }) { - vtkOpenXRManager::GetInstance()->UpdateActionData(actionData->ActionStruct, hand); + vtkOpenXRManager::GetInstance().UpdateActionData(actionData->ActionStruct, hand); } } @@ -499,7 +499,7 @@ void vtkOpenXRRenderWindowInteractor::Initialize() // All action sets have been created, so // We can now attach the action sets to the session - if (!vtkOpenXRManager::GetInstance()->AttachSessionActionSets()) + if (!vtkOpenXRManager::GetInstance().AttachSessionActionSets()) { this->Initialized = false; return; @@ -536,13 +536,13 @@ bool vtkOpenXRRenderWindowInteractor::LoadActions(const std::string& actionFilen // Create an action set std::string localizedActionSetName = "VTK actions"; - vtkOpenXRManager::GetInstance()->CreateActionSet(this->ActionSetName, localizedActionSetName); + vtkOpenXRManager::GetInstance().CreateActionSet(this->ActionSetName, localizedActionSetName); // We must select an action set to create actions // For instance only one action set so select it // Improvement: select each action set and create all actions // that belong to it - vtkOpenXRManager::GetInstance()->SelectActiveActionSet(0); + vtkOpenXRManager::GetInstance().SelectActiveActionSet(0); // Create actions Json::Value actions = root["actions"]; @@ -603,7 +603,7 @@ bool vtkOpenXRRenderWindowInteractor::LoadActions(const std::string& actionFilen // Create the action using the selected action set Action_t actionStruct; actionStruct.ActionType = xrActionType; - if (!vtkOpenXRManager::GetInstance()->CreateOneAction(actionStruct, name, localizedName)) + if (!vtkOpenXRManager::GetInstance().CreateOneAction(actionStruct, name, localizedName)) { return false; } @@ -751,7 +751,7 @@ bool vtkOpenXRRenderWindowInteractor::LoadDefaultBinding(const std::string& bind return; } - XrPath xrPath = vtkOpenXRManager::GetInstance()->GetXrPath(path); + XrPath xrPath = vtkOpenXRManager::GetInstance().GetXrPath(path); actionSuggestedBindings.push_back({ actionT.Action, xrPath }); } }; @@ -798,7 +798,7 @@ bool vtkOpenXRRenderWindowInteractor::LoadDefaultBinding(const std::string& bind } // Submit all suggested bindings - return vtkOpenXRManager::GetInstance()->SuggestActions( + return vtkOpenXRManager::GetInstance().SuggestActions( interactionProfile, actionSuggestedBindings); } @@ -837,6 +837,6 @@ bool vtkOpenXRRenderWindowInteractor::ApplyVibration(const std::string& actionNa return false; } - return vtkOpenXRManager::GetInstance()->ApplyVibration( + return vtkOpenXRManager::GetInstance().ApplyVibration( actionData->ActionStruct, hand, amplitude, duration, frequency); } -- GitLab From d16db6b44c502794f249d5198f7eaa7e8c435908 Mon Sep 17 00:00:00 2001 From: Lucas Gandel Date: Wed, 13 Apr 2022 12:34:55 +0200 Subject: [PATCH 0287/1015] Remove useless modifications to the OpenXR render window state --- Rendering/OpenXR/vtkOpenXRRenderWindowInteractor.cxx | 5 ----- 1 file changed, 5 deletions(-) diff --git a/Rendering/OpenXR/vtkOpenXRRenderWindowInteractor.cxx b/Rendering/OpenXR/vtkOpenXRRenderWindowInteractor.cxx index f0bd358aa1d7..023d09e193c7 100644 --- a/Rendering/OpenXR/vtkOpenXRRenderWindowInteractor.cxx +++ b/Rendering/OpenXR/vtkOpenXRRenderWindowInteractor.cxx @@ -77,12 +77,7 @@ void vtkOpenXRRenderWindowInteractor::DoOneEvent( // Start a render this->InvokeEvent(vtkCommand::RenderEvent); - auto ostate = renWin->GetState(); - renWin->MakeCurrent(); - ostate->Reset(); - ostate->Push(); renWin->Render(); - ostate->Pop(); } //------------------------------------------------------------------------------ -- GitLab From 6419a33946a52d884c30715249fb7401881ef384 Mon Sep 17 00:00:00 2001 From: Lucas Gandel Date: Wed, 13 Apr 2022 12:47:48 +0200 Subject: [PATCH 0288/1015] Fix OpenXR view pose ProjectionLayerViews pose and fov values are only set after rendering, in vtkOpenXRManager::PrepareRendering. Use Views instead to make sure we use the information of the current frame. Views are acquired in vtkOpenXRManager::WaitAndBeginFrame, just before rendering is performed by the render window. --- Rendering/OpenXR/vtkOpenXRManager.h | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Rendering/OpenXR/vtkOpenXRManager.h b/Rendering/OpenXR/vtkOpenXRManager.h index 93af7f8b7fb8..ac3de73f5a5b 100644 --- a/Rendering/OpenXR/vtkOpenXRManager.h +++ b/Rendering/OpenXR/vtkOpenXRManager.h @@ -127,7 +127,7 @@ public: { return nullptr; } - return &(this->RenderResources->ProjectionLayerViews[eye].pose); + return &(this->RenderResources->Views[eye].pose); } //@} @@ -143,7 +143,7 @@ public: { return nullptr; } - return &(this->RenderResources->ProjectionLayerViews[eye].fov); + return &(this->RenderResources->Views[eye].fov); } //@} -- GitLab From 7b6d750aa15b0922c64c19e3d0e1d90bd2c7c49b Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Wed, 1 Jun 2022 00:01:30 -0400 Subject: [PATCH 0289/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index 9a8797a0b6be..cfabc7923656 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220531) +set(VTK_BUILD_VERSION 20220601) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From dc6f1853585cd974e2a47a16f5e50858f647fbe3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?F=C3=A9lix=20Olart?= Date: Tue, 17 May 2022 15:35:19 +0200 Subject: [PATCH 0290/1015] Fixed segmentation fault no global controller set --- IO/Parallel/vtkPOpenFOAMReader.cxx | 2 ++ 1 file changed, 2 insertions(+) diff --git a/IO/Parallel/vtkPOpenFOAMReader.cxx b/IO/Parallel/vtkPOpenFOAMReader.cxx index bed8b02f0ba5..b60e48bd81c5 100644 --- a/IO/Parallel/vtkPOpenFOAMReader.cxx +++ b/IO/Parallel/vtkPOpenFOAMReader.cxx @@ -66,6 +66,7 @@ #include "vtkDataArraySelection.h" #include "vtkDirectory.h" #include "vtkDoubleArray.h" +#include "vtkDummyController.h" #include "vtkFieldData.h" #include "vtkInformation.h" #include "vtkInformationVector.h" @@ -350,6 +351,7 @@ vtkPOpenFOAMReader::vtkPOpenFOAMReader() this->SetController(vtkMultiProcessController::GetGlobalController()); if (this->Controller == nullptr) { + this->SetController(vtkDummyController::New()); this->NumProcesses = 1; this->ProcessId = 0; } -- GitLab From 02b0bc01233fe841da65fdd5b0dc390fe49795a5 Mon Sep 17 00:00:00 2001 From: Zach Jibben Date: Thu, 5 May 2022 16:34:16 -0600 Subject: [PATCH 0291/1015] Use Truchas FIELDNAME attributes as the displayed field name --- IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx | 2 +- IO/TRUCHAS/vtkTRUCHASReader.cxx | 38 ++++++++++++++++++-- 2 files changed, 37 insertions(+), 3 deletions(-) diff --git a/IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx b/IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx index 9b756001bbde..84609122a06d 100644 --- a/IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx +++ b/IO/TRUCHAS/Testing/Cxx/TestTRUCHASReader.cxx @@ -202,7 +202,7 @@ int TestTRUCHASReader(int argc, char* argv[]) double tNext = tAlpha - 0.1 + i * (tOmega - tAlpha) * 2.5 / divs; reader->UpdateTimeStep(tNext); grid = vtkUnstructuredGrid::SafeDownCast(reader->GetOutput()->GetBlock(1)); - da = vtkDoubleArray::SafeDownCast(grid->GetCellData()->GetArray("dTdt")); + da = vtkDoubleArray::SafeDownCast(grid->GetCellData()->GetArray("dT/dt")); double* mM = da->GetRange(); cerr << "ts " << i << ":" << tNext << " got " << mM[0] << "," << mM[1] << endl; if (!AE(mM[0], expectedRanges[i][0]) || !AE(mM[1], expectedRanges[i][1])) diff --git a/IO/TRUCHAS/vtkTRUCHASReader.cxx b/IO/TRUCHAS/vtkTRUCHASReader.cxx index 79659fecc006..1021f04c57f0 100644 --- a/IO/TRUCHAS/vtkTRUCHASReader.cxx +++ b/IO/TRUCHAS/vtkTRUCHASReader.cxx @@ -959,6 +959,22 @@ int vtkTRUCHASReader::RequestData( continue; } + // get the visualization field name + char field_name[MAX_NAME + 1]; + if (H5Aexists_by_name(now_gid, array_name, "FIELDNAME", H5P_DEFAULT)) + { + memset(field_name, 0, strlen(field_name)); + hid_t attr = H5Aopen(did, "FIELDNAME", H5P_DEFAULT); + hid_t atype = H5Aget_type(attr); + hid_t atype_mem = H5Tget_native_type(atype, H5T_DIR_ASCEND); + H5Aread(attr, atype_mem, field_name); + H5Aclose(attr); + } + else + { + strncpy(field_name, array_name, MAX_NAME); + } + bool isFloat = this->Internals->array_isFloat[array_name]; double** vals_out = nullptr; int** ivals_out = nullptr; @@ -1032,8 +1048,26 @@ int vtkTRUCHASReader::RequestData( { vArray = vtkIntArray::New(); } - vArray->SetName(array_name); + vArray->SetName(field_name); vArray->SetNumberOfComponents(dims[1]); + if (strncmp(array_name, "VOF", 3) == 0) + { + // For the VOF field, name the components by the given FIELDNAMEX attribute. + for (int i = 0; i < dims[1]; i++) + { + std::string attr_name = "FIELDNAME" + std::to_string(i + 1); + if (!H5Aexists_by_name(now_gid, array_name, attr_name.c_str(), H5P_DEFAULT)) + continue; + hid_t attr = H5Aopen(did, attr_name.c_str(), H5P_DEFAULT); + hid_t atype = H5Aget_type(attr); + hid_t atype_mem = H5Tget_native_type(atype, H5T_DIR_ASCEND); + char component_name[MAX_NAME + 1]; + memset(component_name, 0, MAX_NAME); + H5Aread(attr, atype_mem, component_name); + H5Aclose(attr); + vArray->SetComponentName(i, component_name); + } + } vArray->SetNumberOfTuples(grid[b]->GetNumberOfCells()); arrayGroup->AddArray(vArray); vArray->Delete(); @@ -1062,7 +1096,7 @@ int vtkTRUCHASReader::RequestData( { mArray = vtkIntArray::New(); } - mArray->SetName(array_name); + mArray->SetName(field_name); mArray->SetNumberOfComponents(dims[1]); mArray->SetNumberOfTuples(totalNumPoints); this->Internals->PointData->AddArray(mArray); -- GitLab From 751de4dcbcbe7c27462905c34cacd94983e05f8a Mon Sep 17 00:00:00 2001 From: Michael Migliore Date: Mon, 16 May 2022 20:38:50 +0200 Subject: [PATCH 0292/1015] Fix static library component name --- CMake/vtkModule.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkModule.cmake b/CMake/vtkModule.cmake index 36787adb8023..9f352f1ba188 100644 --- a/CMake/vtkModule.cmake +++ b/CMake/vtkModule.cmake @@ -4098,7 +4098,7 @@ function (_vtk_module_install target) ${ARGN} ARCHIVE DESTINATION "${_vtk_build_ARCHIVE_DESTINATION}" - COMPONENT "${_vtk_install_headers_component}" + COMPONENT "${_vtk_install_targets_component}" LIBRARY DESTINATION "${_vtk_build_LIBRARY_DESTINATION}" COMPONENT "${_vtk_install_targets_component}" -- GitLab From 91c047a18ff212219cdac2497d561515794bf07d Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Wed, 1 Jun 2022 14:57:51 -0400 Subject: [PATCH 0293/1015] Move vtkLinearTransformCellLocator to FiltersFlowPaths --- Common/DataModel/CMakeLists.txt | 1 - Common/DataModel/Testing/Cxx/CMakeLists.txt | 1 - Common/DataModel/vtk.module | 2 -- Filters/FlowPaths/CMakeLists.txt | 1 + Filters/FlowPaths/Testing/Cxx/CMakeLists.txt | 1 + .../Testing/Cxx/TestCellLocatorsLinearTransform.cxx | 0 .../FlowPaths}/vtkLinearTransformCellLocator.cxx | 0 .../FlowPaths}/vtkLinearTransformCellLocator.h | 6 +++--- 8 files changed, 5 insertions(+), 7 deletions(-) rename {Common/DataModel => Filters/FlowPaths}/Testing/Cxx/TestCellLocatorsLinearTransform.cxx (100%) rename {Common/DataModel => Filters/FlowPaths}/vtkLinearTransformCellLocator.cxx (100%) rename {Common/DataModel => Filters/FlowPaths}/vtkLinearTransformCellLocator.h (97%) diff --git a/Common/DataModel/CMakeLists.txt b/Common/DataModel/CMakeLists.txt index 11ecc1fec06e..3ccf3084f08c 100644 --- a/Common/DataModel/CMakeLists.txt +++ b/Common/DataModel/CMakeLists.txt @@ -138,7 +138,6 @@ set(classes vtkLagrangeTriangle vtkLagrangeWedge vtkLine - vtkLinearTransformCellLocator vtkLocator vtkMarchingCubesTriangleCases vtkMarchingSquaresLineCases diff --git a/Common/DataModel/Testing/Cxx/CMakeLists.txt b/Common/DataModel/Testing/Cxx/CMakeLists.txt index 0b17fed4331e..fd2ed5074ce2 100644 --- a/Common/DataModel/Testing/Cxx/CMakeLists.txt +++ b/Common/DataModel/Testing/Cxx/CMakeLists.txt @@ -15,7 +15,6 @@ vtk_add_test_cxx(vtkCommonDataModelCxxTests tests TestAngularPeriodicDataArray.cxx TestArrayListTemplate.cxx TestCellInflation.cxx - TestCellLocatorsLinearTransform.cxx TestColor.cxx TestCoordinateFrame.cxx TestVector.cxx diff --git a/Common/DataModel/vtk.module b/Common/DataModel/vtk.module index 7b263bd9524e..d14662b28aab 100644 --- a/Common/DataModel/vtk.module +++ b/Common/DataModel/vtk.module @@ -15,7 +15,6 @@ DEPENDS PRIVATE_DEPENDS VTK::CommonMisc VTK::CommonSystem - VTK::eigen VTK::pugixml VTK::vtksys TEST_DEPENDS @@ -24,7 +23,6 @@ TEST_DEPENDS VTK::CommonExecutionModel VTK::CommonSystem VTK::FiltersExtraction - VTK::FiltersFlowPaths VTK::FiltersGeneric VTK::FiltersGeometry VTK::FiltersModeling diff --git a/Filters/FlowPaths/CMakeLists.txt b/Filters/FlowPaths/CMakeLists.txt index 732b472c655d..7d3ee08eb24e 100644 --- a/Filters/FlowPaths/CMakeLists.txt +++ b/Filters/FlowPaths/CMakeLists.txt @@ -10,6 +10,7 @@ set(classes vtkLagrangianMatidaIntegrationModel vtkLagrangianParticle vtkLagrangianParticleTracker + vtkLinearTransformCellLocator vtkModifiedBSPTree vtkParallelVectors vtkParticlePathFilter diff --git a/Filters/FlowPaths/Testing/Cxx/CMakeLists.txt b/Filters/FlowPaths/Testing/Cxx/CMakeLists.txt index 571f4bd627cd..7dc5319b8ba7 100644 --- a/Filters/FlowPaths/Testing/Cxx/CMakeLists.txt +++ b/Filters/FlowPaths/Testing/Cxx/CMakeLists.txt @@ -1,5 +1,6 @@ vtk_add_test_cxx(vtkFiltersFlowPathsCxxTests tests TestBSPTree.cxx + TestCellLocatorsLinearTransform.cxx TestEvenlySpacedStreamlines2D.cxx TestStreamTracer.cxx,NO_VALID TestStreamTracerSurface.cxx diff --git a/Common/DataModel/Testing/Cxx/TestCellLocatorsLinearTransform.cxx b/Filters/FlowPaths/Testing/Cxx/TestCellLocatorsLinearTransform.cxx similarity index 100% rename from Common/DataModel/Testing/Cxx/TestCellLocatorsLinearTransform.cxx rename to Filters/FlowPaths/Testing/Cxx/TestCellLocatorsLinearTransform.cxx diff --git a/Common/DataModel/vtkLinearTransformCellLocator.cxx b/Filters/FlowPaths/vtkLinearTransformCellLocator.cxx similarity index 100% rename from Common/DataModel/vtkLinearTransformCellLocator.cxx rename to Filters/FlowPaths/vtkLinearTransformCellLocator.cxx diff --git a/Common/DataModel/vtkLinearTransformCellLocator.h b/Filters/FlowPaths/vtkLinearTransformCellLocator.h similarity index 97% rename from Common/DataModel/vtkLinearTransformCellLocator.h rename to Filters/FlowPaths/vtkLinearTransformCellLocator.h index 4f82adff6c78..17cac10e59be 100644 --- a/Common/DataModel/vtkLinearTransformCellLocator.h +++ b/Filters/FlowPaths/vtkLinearTransformCellLocator.h @@ -39,12 +39,12 @@ #define vtkLinearTransformCellLocator_h #include "vtkAbstractCellLocator.h" -#include "vtkCommonDataModelModule.h" // For export macro -#include "vtkSmartPointer.h" // For vtkSmartPointer +#include "vtkFiltersFlowPathsModule.h" // For export macro +#include "vtkSmartPointer.h" // For vtkSmartPointer class vtkTransform; -class VTKCOMMONDATAMODEL_EXPORT vtkLinearTransformCellLocator : public vtkAbstractCellLocator +class VTKFILTERSFLOWPATHS_EXPORT vtkLinearTransformCellLocator : public vtkAbstractCellLocator { public: ///@{ -- GitLab From ae8ac1169b3a8d0f549b37ea0877c47d86a7ec13 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Thu, 2 Jun 2022 00:01:33 -0400 Subject: [PATCH 0294/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index cfabc7923656..e241eb19ef1d 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220601) +set(VTK_BUILD_VERSION 20220602) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From 8bc52020711f009bfb17355e705fb75374181022 Mon Sep 17 00:00:00 2001 From: Lucas Givord Date: Tue, 31 May 2022 12:27:52 +0200 Subject: [PATCH 0295/1015] Fix axes for histogram in ScatterPlotMatrix --- Charts/Core/Testing/Cxx/CMakeLists.txt | 1 + .../Cxx/TestScatterPlotMatrixHistogram.cxx | 83 +++++++++++++++++++ .../Baseline/TestScatterPlotMatrix.png.sha512 | 2 +- .../TestScatterPlotMatrixHistogram.png.sha512 | 1 + .../TestScatterPlotMatrixVehicles.png.sha512 | 2 +- .../TestScatterPlotMatrixVisible.png.sha512 | 2 +- Charts/Core/vtkScatterPlotMatrix.cxx | 28 ++++++- ...catterPlotMatrixVehiclesDensity.png.sha512 | 2 +- 8 files changed, 115 insertions(+), 6 deletions(-) create mode 100644 Charts/Core/Testing/Cxx/TestScatterPlotMatrixHistogram.cxx create mode 100644 Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixHistogram.png.sha512 diff --git a/Charts/Core/Testing/Cxx/CMakeLists.txt b/Charts/Core/Testing/Cxx/CMakeLists.txt index 709f062c2ac3..8ac0ed3e51e7 100644 --- a/Charts/Core/Testing/Cxx/CMakeLists.txt +++ b/Charts/Core/Testing/Cxx/CMakeLists.txt @@ -108,6 +108,7 @@ vtk_add_test_cxx(vtkChartsCoreCxxTests tests TestScalarsToColors.cxx TestScatterPlot.cxx TestScatterPlotMatrix.cxx + TestScatterPlotMatrixHistogram.cxx TestScatterPlotMatrixVehicles.cxx TestScatterPlotMatrixVisible.cxx TestScientificPlot.cxx diff --git a/Charts/Core/Testing/Cxx/TestScatterPlotMatrixHistogram.cxx b/Charts/Core/Testing/Cxx/TestScatterPlotMatrixHistogram.cxx new file mode 100644 index 000000000000..17af4e5963f6 --- /dev/null +++ b/Charts/Core/Testing/Cxx/TestScatterPlotMatrixHistogram.cxx @@ -0,0 +1,83 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: TestScatterPlotMatrixHistogram.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ + +#include "vtkChart.h" +#include "vtkContextView.h" +#include "vtkFloatArray.h" +#include "vtkMath.h" +#include "vtkNew.h" +#include "vtkPlot.h" +#include "vtkRenderWindow.h" +#include "vtkRenderWindowInteractor.h" +#include "vtkScatterPlotMatrix.h" +#include "vtkTable.h" + +namespace +{ +void PopulateMatrixPlot(vtkScatterPlotMatrix* matrix, int numberOfPoints) +{ + // Create a table with some points in it... + vtkNew table; + vtkNew arrX; + arrX->SetName("x"); + table->AddColumn(arrX); + vtkNew arrC; + arrC->SetName("cos(x)"); + table->AddColumn(arrC); + vtkNew arrS; + arrS->SetName("sin(x)"); + table->AddColumn(arrS); + vtkNew arrS2; + arrS2->SetName("sin(x + 0.5)"); + table->AddColumn(arrS2); + vtkNew tangent; + tangent->SetName("tan(x)"); + table->AddColumn(tangent); + // Test the chart scatter plot matrix + float inc = 4.0 * vtkMath::Pi() / (numberOfPoints - 1); + table->SetNumberOfRows(numberOfPoints); + for (int i = 0; i < numberOfPoints; ++i) + { + table->SetValue(i, 0, i * inc); + table->SetValue(i, 1, cos(i * inc)); + table->SetValue(i, 2, sin(i * inc)); + table->SetValue(i, 3, sin(i * inc) + 0.5); + table->SetValue(i, 4, tan(i * inc)); + } + + // Set the scatter plot matrix up to analyze all columns in the table. + matrix->SetInput(table); + matrix->SetNumberOfBins(7); +} +} + +int TestScatterPlotMatrixHistogram(int, char*[]) +{ + vtkNew view; + view->GetRenderWindow()->SetSize(800, 600); + vtkNew matrix; + view->GetScene()->AddItem(matrix); + + ::PopulateMatrixPlot(matrix, 100); + + view->Render(); + + ::PopulateMatrixPlot(matrix, 400); + + // Finally render the scene and compare the image to a reference image + view->GetInteractor()->Initialize(); + view->GetInteractor()->Start(); + return EXIT_SUCCESS; +} diff --git a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrix.png.sha512 b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrix.png.sha512 index 476cc78bbb7d..b4758a1d78f4 100644 --- a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrix.png.sha512 +++ b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrix.png.sha512 @@ -1 +1 @@ -36bcf298065b6fa82f7bd60a0afc9de93312ab57436222a5338e1aea01db9b42df2d7dd0a36a7ab8bd791ca591e34373da676509f3128edc88fe68291ea6cd90 +50c04cc49a76c9a40a51398e0c9acf5c9533e06d5135989f027fca7c907ffd19d501246c846ef067f5bbdb960973e37498e6023131cacadc461b3ae782cbbf15 diff --git a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixHistogram.png.sha512 b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixHistogram.png.sha512 new file mode 100644 index 000000000000..f1b73ad9ab19 --- /dev/null +++ b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixHistogram.png.sha512 @@ -0,0 +1 @@ +122b93a56097ec22a474c132554d83c6a4ef05cf8c1da4ac0f1abf1ac170ba8c98a50e0f867e8ca4ab5e80aac7a595237ba567420f2aaebd677e3d6541dbd907 diff --git a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVehicles.png.sha512 b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVehicles.png.sha512 index 6d2e5a6ec38a..545e10cc142a 100644 --- a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVehicles.png.sha512 +++ b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVehicles.png.sha512 @@ -1 +1 @@ -4754a0001d030fd80954fff9b44485b599086474edc78164a468828af88c90ca0fc1ff2218a52d72a4e919316eabfff81bf0a0bf7e06e6e40314a430ab8e9e47 +71f079bc310cbfce1201c457b0de846f74db4ffdd77cc6f1711c265078cb6c22813285a0f674e31697cec796fbf71cac429b3ebeb5ace1ef38ea1ebaafc36ea7 diff --git a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVisible.png.sha512 b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVisible.png.sha512 index 0a88c75f98e5..963cff6148db 100644 --- a/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVisible.png.sha512 +++ b/Charts/Core/Testing/Data/Baseline/TestScatterPlotMatrixVisible.png.sha512 @@ -1 +1 @@ -6264bd26240434ad9d6c65ba8415aa4147d7e317a13beb17e2643745ccc3518085096b766486a0d7b9a9de3d51d7186136bb2f081da6b0d1fd439243b414f582 +203910bb96652ac1302fe4a9b3488b1fabda3ec744b54621576bb9418ef36f073c855ba2ec34cd6227ba949b268590679a5f1d360282cf4aa31a417346d62ce2 diff --git a/Charts/Core/vtkScatterPlotMatrix.cxx b/Charts/Core/vtkScatterPlotMatrix.cxx index b38eff953b92..786e45d9ecb0 100644 --- a/Charts/Core/vtkScatterPlotMatrix.cxx +++ b/Charts/Core/vtkScatterPlotMatrix.cxx @@ -1418,11 +1418,35 @@ void vtkScatterPlotMatrix::UpdateLayout() vtkAxis* axis = chart->GetAxis(vtkAxis::TOP); axis->SetTitle(name); axis->SetLabelsVisible(false); + // Show the labels on the right for populations of bins. axis = chart->GetAxis(vtkAxis::RIGHT); axis->SetLabelsVisible(true); - axis->SetBehavior(vtkAxis::AUTO); - axis->AutoScale(); + std::string rowName = name + "_pops"; + auto arr = this->Private->Histogram->GetRowData()->GetArray(rowName.c_str()); + if (arr) + { + int max = INT_MIN; + + for (int id = 0; id < arr->GetNumberOfValues(); id++) + { + if (arr->GetVariantValue(id) > max) + { + max = arr->GetVariantValue(id).ToInt(); + } + } + + // Apply manually the padding + max += this->Padding * max; + + axis->SetRange(0, max); + } + else + { + axis->SetBehavior(vtkAxis::AUTO); + axis->AutoScale(); + } + // Set the plot corner to the top-right vtkChartXY* xy = vtkChartXY::SafeDownCast(chart); if (xy) diff --git a/Filters/OpenTURNS/Testing/Data/Baseline/TestScatterPlotMatrixVehiclesDensity.png.sha512 b/Filters/OpenTURNS/Testing/Data/Baseline/TestScatterPlotMatrixVehiclesDensity.png.sha512 index fed3840b6dec..4d7e58e36cc6 100644 --- a/Filters/OpenTURNS/Testing/Data/Baseline/TestScatterPlotMatrixVehiclesDensity.png.sha512 +++ b/Filters/OpenTURNS/Testing/Data/Baseline/TestScatterPlotMatrixVehiclesDensity.png.sha512 @@ -1 +1 @@ -8e3a4b4416ef23894913ccba0ce31be6e2b48a2174a2fc7450359c1ad427d5b4a17907f5a52e0896457f98b74ac7e953b6a3062debfca57d47842ae77aa0d103 +80da09724bbd0d8eb38c0e1d02c4061769ad1484e77edc3b61f81d44d061cfb0d4412cd0f089d6aea38d641ff833abaf89e0fee1a4d4d7c5f16319a5f756c263 -- GitLab From 7e6f478eb846db65ebe807cf070b625b9023f804 Mon Sep 17 00:00:00 2001 From: LucasGandel Date: Thu, 2 Jun 2022 11:14:17 +0200 Subject: [PATCH 0296/1015] Fix use of vtkDebugMacro in vtkOpenXRManager that is not a vtkObject Fix issue introduced by b576a06c [1]. [1]: https://gitlab.kitware.com/vtk/vtk/-/commit/b576a06c601d40b0e2cec821606085511e32fa1a --- Rendering/OpenXR/vtkOpenXRManager.cxx | 21 ++++++++++++--------- 1 file changed, 12 insertions(+), 9 deletions(-) diff --git a/Rendering/OpenXR/vtkOpenXRManager.cxx b/Rendering/OpenXR/vtkOpenXRManager.cxx index 99f74e97a07d..0c53b874c182 100644 --- a/Rendering/OpenXR/vtkOpenXRManager.cxx +++ b/Rendering/OpenXR/vtkOpenXRManager.cxx @@ -161,7 +161,7 @@ bool vtkOpenXRManager::BeginSession() return false; } - vtkDebugMacro(<< "Session started."); + vtkDebugWithObjectMacro(nullptr, "Session started."); this->SessionRunning = true; @@ -708,8 +708,8 @@ bool vtkOpenXRManager::CreateSystem() this->XrCheckError(xrGetSystem(this->Instance, &system_get_info, &this->SystemId), "Failed to get system for HMD form factor."); - vtkDebugMacro(<< "Successfully got XrSystem with id " << this->SystemId - << " for HMD form factor."); + vtkDebugWithObjectMacro( + nullptr, "Successfully got XrSystem with id " << this->SystemId << " for HMD form factor."); // checking system properties is generally optional, but we are interested in hand tracking // support @@ -878,9 +878,9 @@ bool vtkOpenXRManager::CreateSession() } #ifdef XR_USE_GRAPHICS_API_OPENGL - vtkDebugMacro(<< "Successfully created a session with OpenGL!"); + vtkDebugWithObjectMacro(nullptr, "Successfully created a session with OpenGL!"); #elif XR_USE_GRAPHICS_API_D3D11 - vtkDebugMacro(<< "Successfully created a session with DirectX!"); + vtkDebugWithObjectMacro(nullptr, "Successfully created a session with DirectX!"); #endif return true; @@ -939,7 +939,8 @@ std::tuple vtkOpenXRManager::SelectSwapchainPixelFormats() this->XrCheckError(xrEnumerateSwapchainFormats(this->Session, 0, &swapchainFormatsCount, nullptr), "Failed to get number of supported swapchain formats"); - vtkDebugMacro(<< "Runtime supports " << swapchainFormatsCount << " swapchain formats"); + vtkDebugWithObjectMacro( + nullptr, "Runtime supports " << swapchainFormatsCount << " swapchain formats"); std::vector swapchainFormats(swapchainFormatsCount); this->XrCheckError(xrEnumerateSwapchainFormats(this->Session, swapchainFormatsCount, @@ -971,7 +972,8 @@ std::tuple vtkOpenXRManager::SelectSwapchainPixelFormats() selectPixelFormat(swapchainFormats, this->GetSupportedDepthFormats(), "depth"); if (depthSwapchainFormat == -1) { - vtkDebugMacro(<< "Disabling depth extension as no depth format are supported"); + vtkDebugWithObjectMacro( + nullptr, "Disabling depth extension as no depth format are supported"); this->OptionalExtensions.DepthExtensionSupported = false; } } @@ -1104,7 +1106,8 @@ bool vtkOpenXRManager::CreateConfigViews() bool vtkOpenXRManager::CreateActionSet( const std::string& actionSetName, const std::string& localizedActionSetName) { - vtkDebugMacro(<< "Create action set " << actionSetName << ": " << localizedActionSetName); + vtkDebugWithObjectMacro( + nullptr, "Create action set " << actionSetName << ": " << localizedActionSetName); XrActionSetCreateInfo actionSetInfo{ XR_TYPE_ACTION_SET_CREATE_INFO }; @@ -1252,7 +1255,7 @@ bool vtkOpenXRManager::CreateOneActionSpace(const XrAction& action, const XrPath bool vtkOpenXRManager::SuggestActions( const std::string& profile, std::vector& actionSuggestedBindings) { - vtkDebugMacro(<< "SuggestActions for profile : " << profile); + vtkDebugWithObjectMacro(nullptr, "SuggestActions for profile : " << profile); VTK_CHECK_NULL_XRHANDLE(this->Instance, "vtkOpenXRManager::SuggestActions, Instance"); XrPath interactionProfilePath; -- GitLab From b56f41fe5bb95e3a9997e6555bc53b61d5fe2c5a Mon Sep 17 00:00:00 2001 From: Charles Gueunet Date: Tue, 24 May 2022 17:10:28 +0200 Subject: [PATCH 0297/1015] Fix array size and transform it to vector to avoid error --- .../HyperTree/vtkHyperTreeGridGeometry.cxx | 35 ++++++++----------- 1 file changed, 14 insertions(+), 21 deletions(-) diff --git a/Filters/HyperTree/vtkHyperTreeGridGeometry.cxx b/Filters/HyperTree/vtkHyperTreeGridGeometry.cxx index 842b31d3b5e9..cf8168e9eb0e 100644 --- a/Filters/HyperTree/vtkHyperTreeGridGeometry.cxx +++ b/Filters/HyperTree/vtkHyperTreeGridGeometry.cxx @@ -936,8 +936,8 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d } // Storage for face vertex IDs - vtkIdType ids[4]; - unsigned int nPts = 4; + std::vector ids; + ids.reserve(6); // Keep track of face axes unsigned int axis1 = orientation ? 0 : 1; @@ -987,7 +987,6 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d // Storage for points double coordsB[3]; double coordsC[3]; - nPts = 0; // Distinguish between relevant types if (type == 1) @@ -1009,8 +1008,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d // Add point when necessary if (create && A <= 0.) { - ids[nPts] = this->Points->InsertNextPoint(coordsA); - ++nPts; + ids.emplace_back(this->Points->InsertNextPoint(coordsA)); } if (A * B < 0) { @@ -1027,8 +1025,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d } // if ( this->EdgesB[i] == -1 ) // Update points - ids[nPts] = this->EdgesB[i]; - ++nPts; + ids.emplace_back(this->EdgesB[i]); if (indPair) { pair[1] = i; @@ -1073,8 +1070,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d // Add point when necessary if (create && A1 >= 0. && A2 <= 0.) { - ids[nPts] = this->Points->InsertNextPoint(coordsA); - ++nPts; + ids.emplace_back(this->Points->InsertNextPoint(coordsA)); } if (A1 < 0. && A1 * B1 < 0.) { @@ -1091,8 +1087,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d } // if ( this->EdgesB[i] == -1 ) // Update points - ids[nPts] = this->EdgesA[i]; - ++nPts; + ids.emplace_back(this->EdgesA[i]); if (indPairA) { pairA[1] = i; @@ -1118,8 +1113,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d } // if ( this->EdgesA[i] == -1 ) // Update points - ids[nPts] = this->EdgesB[i]; - ++nPts; + ids.emplace_back(this->EdgesB[i]); if (indPairB) { pairB[1] = i; @@ -1145,8 +1139,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d } // if ( this->EdgesA[i] == -1 ) // Update points - ids[nPts] = this->EdgesA[i]; - ++nPts; + ids.emplace_back(this->EdgesA[i]); if (indPairA) { pairA[1] = i; @@ -1188,8 +1181,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d // Add point when necessary if (create && A >= 0.) { - ids[nPts] = this->Points->InsertNextPoint(coordsA); - ++nPts; + ids.emplace_back(this->Points->InsertNextPoint(coordsA)); } if (A * B < 0.) { @@ -1206,8 +1198,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d } // if ( this->EdgesB[i] == -1 ) // Update points - ids[nPts] = this->EdgesA[i]; - ++nPts; + ids.emplace_back(this->EdgesA[i]); if (indPair) { pair[1] = i; @@ -1229,6 +1220,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d } // if ( type < 2 ) else { + ids.resize(4); // Create quadrangle vertices depending on orientation ids[0] = this->Points->InsertNextPoint(pt); pt[axis1] += size[axis1]; @@ -1241,6 +1233,7 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d } // if ( this->HasInterface ) else { + ids.resize(4); // Create quadrangle vertices depending on orientation ids[0] = this->Points->InsertNextPoint(pt); pt[axis1] += size[axis1]; @@ -1252,10 +1245,10 @@ void vtkHyperTreeGridGeometry::AddFace2(vtkIdType inId, vtkIdType useId, const d } // else // Insert next face if needed - if (create) + if (create && !ids.empty()) { // Create cell and corresponding ID - vtkIdType outId = this->Cells->InsertNextCell(nPts, ids); + vtkIdType outId = this->Cells->InsertNextCell(ids.size(), ids.data()); // Copy face data from that of the cell from which it comes this->OutData->CopyData(this->InData, useId, outId); -- GitLab From 8e77f5b471d32bbdf4198d8b080d3179b56ef72b Mon Sep 17 00:00:00 2001 From: Charles Gueunet Date: Thu, 2 Jun 2022 14:11:31 +0200 Subject: [PATCH 0298/1015] Update baseline --- .../TestHyperTreeGridBinary2DInterfaceMaterial.png.sha512 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Filters/HyperTree/Testing/Data/Baseline/TestHyperTreeGridBinary2DInterfaceMaterial.png.sha512 b/Filters/HyperTree/Testing/Data/Baseline/TestHyperTreeGridBinary2DInterfaceMaterial.png.sha512 index af09059ef416..5163deb03cd3 100644 --- a/Filters/HyperTree/Testing/Data/Baseline/TestHyperTreeGridBinary2DInterfaceMaterial.png.sha512 +++ b/Filters/HyperTree/Testing/Data/Baseline/TestHyperTreeGridBinary2DInterfaceMaterial.png.sha512 @@ -1 +1 @@ -4598f8ee038d9abbbcf7d965c4f801c4e2994c4e2978fc69dbb392f6993186e3cd5342f95bdf92267386fcbe93c122fd0e1c9a627c2ad0932028eee0cc5c904e +4df7292f3b658f218b46a04d43b16b0ed65edc0037ebfed362d33ce3390c1ef3ba57a444d3bf4ee321689e27ef7c1f9ddc928064a9df9b5ee146752c9363422c -- GitLab From 67ef38e2d3b8d50a9433a0fb0c61974fd3298498 Mon Sep 17 00:00:00 2001 From: Yohann Bearzi Date: Thu, 2 Jun 2022 09:06:19 -0400 Subject: [PATCH 0299/1015] vtkFieldData: adding safeguard in GetRange `vtkFieldData::GetRange` now skips queries on arrays that are not part of the field data. --- Common/DataModel/vtkFieldData.cxx | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/Common/DataModel/vtkFieldData.cxx b/Common/DataModel/vtkFieldData.cxx index 8402d02a4735..b2613147d019 100644 --- a/Common/DataModel/vtkFieldData.cxx +++ b/Common/DataModel/vtkFieldData.cxx @@ -677,6 +677,13 @@ bool vtkFieldData::GetRange(const char* name, double range[2], int comp) { int index; this->GetAbstractArray(name, index); + if (index == -1) + { + constexpr double NaN = std::numeric_limits::quiet_NaN(); + range[0] = NaN; + range[1] = NaN; + return false; + } return this->GetRange(index, range, comp); } @@ -692,6 +699,13 @@ bool vtkFieldData::GetFiniteRange(const char* name, double range[2], int comp) { int index; this->GetAbstractArray(name, index); + if (index == -1) + { + constexpr double NaN = std::numeric_limits::quiet_NaN(); + range[0] = NaN; + range[1] = NaN; + return false; + } return this->GetFiniteRange(index, range, comp); } -- GitLab From 49e2c709c49f67bdf6a3971e7ad6978d21f5e5a5 Mon Sep 17 00:00:00 2001 From: Kitware Robot Date: Fri, 3 Jun 2022 00:01:34 -0400 Subject: [PATCH 0300/1015] VTK Nightly Date Stamp --- CMake/vtkVersion.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMake/vtkVersion.cmake b/CMake/vtkVersion.cmake index e241eb19ef1d..fe1ddad3d438 100644 --- a/CMake/vtkVersion.cmake +++ b/CMake/vtkVersion.cmake @@ -1,7 +1,7 @@ # VTK version number components. set(VTK_MAJOR_VERSION 9) set(VTK_MINOR_VERSION 1) -set(VTK_BUILD_VERSION 20220602) +set(VTK_BUILD_VERSION 20220603) if (NOT VTK_MINOR_VERSION LESS 100) message(FATAL_ERROR -- GitLab From a4fc149bd80cfa10642f74cf5733672f2978715d Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Fri, 3 Jun 2022 09:10:10 +0200 Subject: [PATCH 0301/1015] Increase timeouts for recurring timeout failing jobs in the CI --- .gitlab-ci.yml | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index f323fda3216d..ac8e45c1cfd2 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -129,7 +129,7 @@ vtk:fedora34-cuda-mpi:test-ext: - fedora34-cuda-mpi:test variables: CTEST_MAX_PARALLELISM: 8 - timeout: 2 hours + timeout: 150 minutes fedora34-mpi-offscreen-osmesa-python:build: extends: @@ -162,6 +162,7 @@ vtk:fedora34-mpi-offscreen-osmesa-python:test-ext: - fedora34-mpi-offscreen-osmesa-python:test needs: - fedora34-mpi-offscreen-osmesa-python:test + timeout: 90 minutes # fedora34-java-mpi-qt-tbb:build: # extends: @@ -546,7 +547,7 @@ fedora34-tidy:build: dependencies: [] # clang-tidy really hampers compilation cache improvements, so it takes # longer. - timeout: 150 minutes + timeout: 180 minutes ## Sanitizer builds -- GitLab From 3fd73fe3ecffbcb75d28f506f3420bbf2900cc5b Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Wed, 1 Jun 2022 16:49:19 +0200 Subject: [PATCH 0302/1015] Fix a modernize-use-bool-literals tidy warning --- Accelerators/Vtkm/Filters/vtkmFilterOverrides.cxx.in | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Accelerators/Vtkm/Filters/vtkmFilterOverrides.cxx.in b/Accelerators/Vtkm/Filters/vtkmFilterOverrides.cxx.in index bc7809cc2ba8..1575b6d2692b 100644 --- a/Accelerators/Vtkm/Filters/vtkmFilterOverrides.cxx.in +++ b/Accelerators/Vtkm/Filters/vtkmFilterOverrides.cxx.in @@ -22,7 +22,7 @@ namespace { -bool vtkmFilterOverridesEnabled = static_cast(VTK_ENABLE_VTKM_OVERRIDES); +bool vtkmFilterOverridesEnabled = VTK_ENABLE_VTKM_OVERRIDES != 0; struct FilterOverrides { -- GitLab From 24f18642677067471e2fed730c83e702e1ede5fc Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Fri, 3 Jun 2022 07:40:26 -0400 Subject: [PATCH 0303/1015] Fix TestCellLocatorLinearTransform cmake warning --- Filters/FlowPaths/Testing/Cxx/CMakeLists.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Filters/FlowPaths/Testing/Cxx/CMakeLists.txt b/Filters/FlowPaths/Testing/Cxx/CMakeLists.txt index 7dc5319b8ba7..d85fb62bef29 100644 --- a/Filters/FlowPaths/Testing/Cxx/CMakeLists.txt +++ b/Filters/FlowPaths/Testing/Cxx/CMakeLists.txt @@ -1,6 +1,6 @@ vtk_add_test_cxx(vtkFiltersFlowPathsCxxTests tests TestBSPTree.cxx - TestCellLocatorsLinearTransform.cxx + TestCellLocatorsLinearTransform.cxx,NO_DATA,NO_VALID,NO_OUTPUT TestEvenlySpacedStreamlines2D.cxx TestStreamTracer.cxx,NO_VALID TestStreamTracerSurface.cxx -- GitLab From 28d65d3d92b4fd07e05db59191ca4f4777904757 Mon Sep 17 00:00:00 2001 From: Mathieu Westphal Date: Wed, 15 Dec 2021 16:16:54 +0100 Subject: [PATCH 0304/1015] Fix potential segfault with temporal data in Ensight6 --- IO/EnSight/vtkEnSight6BinaryReader.cxx | 28 +++++++++++++--------- IO/EnSight/vtkEnSight6Reader.cxx | 33 ++++++++++++++++---------- 2 files changed, 37 insertions(+), 24 deletions(-) diff --git a/IO/EnSight/vtkEnSight6BinaryReader.cxx b/IO/EnSight/vtkEnSight6BinaryReader.cxx index 080de74190e6..7d0a36ba5b3b 100644 --- a/IO/EnSight/vtkEnSight6BinaryReader.cxx +++ b/IO/EnSight/vtkEnSight6BinaryReader.cxx @@ -1233,6 +1233,7 @@ int vtkEnSight6BinaryReader::ReadVectorsPerNode(const char* fileName, const char vectors = vtkFloatArray::New(); vectors->SetNumberOfTuples(numPts); vectors->SetNumberOfComponents(3); + vectors->SetName(description); vectors->Allocate(numPts * 3); vectorsRead = new float[numPts * 3]; this->ReadFloatArray(vectorsRead, numPts * 3); @@ -1250,17 +1251,18 @@ int vtkEnSight6BinaryReader::ReadVectorsPerNode(const char* fileName, const char { partId = this->UnstructuredPartIds->GetId(i); output = this->GetDataSetFromBlock(compositeOutput, partId); - vectors->SetName(description); - output->GetPointData()->AddArray(vectors); - if (!output->GetPointData()->GetVectors()) + if (output) { - output->GetPointData()->SetVectors(vectors); + output->GetPointData()->AddArray(vectors); + if (!output->GetPointData()->GetVectors()) + { + output->GetPointData()->SetVectors(vectors); + } } } } else { - vectors->SetName(description); output = this->GetDataSetFromBlock(compositeOutput, this->NumberOfGeometryParts); output->GetPointData()->AddArray(vectors); if (!output->GetPointData()->GetVectors()) @@ -1285,6 +1287,7 @@ int vtkEnSight6BinaryReader::ReadVectorsPerNode(const char* fileName, const char vectors = vtkFloatArray::New(); vectors->SetNumberOfTuples(numPts); vectors->SetNumberOfComponents(3); + vectors->SetName(description); vectors->Allocate(numPts * 3); vectorsRead = new float[numPts * 3]; @@ -1297,7 +1300,6 @@ int vtkEnSight6BinaryReader::ReadVectorsPerNode(const char* fileName, const char vectors->InsertTuple(i, vector); } - vectors->SetName(description); output->GetPointData()->AddArray(vectors); if (!output->GetPointData()->GetVectors()) { @@ -1422,6 +1424,7 @@ int vtkEnSight6BinaryReader::ReadTensorsPerNode(const char* fileName, const char tensors = vtkFloatArray::New(); tensors->SetNumberOfTuples(numPts); tensors->SetNumberOfComponents(6); + tensors->SetName(description); tensors->Allocate(numPts * 6); tensorsRead = new float[numPts * 6]; this->ReadFloatArray(tensorsRead, numPts * 6); @@ -1439,8 +1442,11 @@ int vtkEnSight6BinaryReader::ReadTensorsPerNode(const char* fileName, const char for (i = 0; i < this->UnstructuredPartIds->GetNumberOfIds(); i++) { partId = this->UnstructuredPartIds->GetId(i); - tensors->SetName(description); - this->GetDataSetFromBlock(compositeOutput, partId)->GetPointData()->AddArray(tensors); + output = this->GetDataSetFromBlock(compositeOutput, partId); + if (output) + { + output->GetPointData()->AddArray(tensors); + } } tensors->Delete(); delete[] tensorsRead; @@ -1458,6 +1464,7 @@ int vtkEnSight6BinaryReader::ReadTensorsPerNode(const char* fileName, const char tensors = vtkFloatArray::New(); tensors->SetNumberOfTuples(numPts); tensors->SetNumberOfComponents(6); + tensors->SetName(description); tensors->Allocate(numPts * 6); tensorsRead = new float[numPts * 6]; this->ReadFloatArray(tensorsRead, numPts * 6); @@ -1473,7 +1480,6 @@ int vtkEnSight6BinaryReader::ReadTensorsPerNode(const char* fileName, const char tensors->InsertTuple(i, tensor); } - tensors->SetName(description); output->GetPointData()->AddArray(tensors); tensors->Delete(); delete[] tensorsRead; @@ -1795,6 +1801,7 @@ int vtkEnSight6BinaryReader::ReadVectorsPerElement(const char* fileName, const c lineRead = this->ReadLine(line); // element type or "block" vectors->SetNumberOfTuples(numCells); vectors->SetNumberOfComponents(3); + vectors->SetName(description); vectors->Allocate(numCells * 3); // need to find out from CellIds how many cells we have of this element @@ -1841,7 +1848,6 @@ int vtkEnSight6BinaryReader::ReadVectorsPerElement(const char* fileName, const c delete[] vectorsRead; lineRead = this->ReadLine(line); } - vectors->SetName(description); output->GetCellData()->AddArray(vectors); if (!output->GetCellData()->GetVectors()) { @@ -1984,6 +1990,7 @@ int vtkEnSight6BinaryReader::ReadTensorsPerElement(const char* fileName, const c lineRead = this->ReadLine(line); // element type or "block" tensors->SetNumberOfTuples(numCells); tensors->SetNumberOfComponents(6); + tensors->SetName(description); tensors->Allocate(numCells * 6); // need to find out from CellIds how many cells we have of this element @@ -2038,7 +2045,6 @@ int vtkEnSight6BinaryReader::ReadTensorsPerElement(const char* fileName, const c delete[] tensorsRead; lineRead = this->ReadLine(line); } - tensors->SetName(description); output->GetCellData()->AddArray(tensors); tensors->Delete(); } diff --git a/IO/EnSight/vtkEnSight6Reader.cxx b/IO/EnSight/vtkEnSight6Reader.cxx index 38e97406be34..c7ea6ac3e549 100644 --- a/IO/EnSight/vtkEnSight6Reader.cxx +++ b/IO/EnSight/vtkEnSight6Reader.cxx @@ -584,6 +584,8 @@ int vtkEnSight6Reader::ReadScalarsPerNode(const char* fileName, const char* desc { this->ReadLine(line); } + + scalars->SetName(description); if (!measured) { for (i = 0; i < this->UnstructuredPartIds->GetNumberOfIds(); i++) @@ -594,7 +596,6 @@ int vtkEnSight6Reader::ReadScalarsPerNode(const char* fileName, const char* desc { if (component == 0) { - scalars->SetName(description); output->GetPointData()->AddArray(scalars); if (!output->GetPointData()->GetScalars()) { @@ -610,7 +611,6 @@ int vtkEnSight6Reader::ReadScalarsPerNode(const char* fileName, const char* desc } else { - scalars->SetName(description); output = static_cast( this->GetDataSetFromBlock(compositeOutput, this->NumberOfGeometryParts)); if (output) @@ -792,6 +792,7 @@ int vtkEnSight6Reader::ReadVectorsPerNode(const char* fileName, const char* desc vectors = vtkFloatArray::New(); vectors->SetNumberOfTuples(numPts); vectors->SetNumberOfComponents(3); + vectors->SetName(description); vectors->Allocate(numPts * 3); for (i = 0; i < numLines; i++) { @@ -813,23 +814,25 @@ int vtkEnSight6Reader::ReadVectorsPerNode(const char* fileName, const char* desc { this->ReadLine(line); } + if (!measured) { for (i = 0; i < this->UnstructuredPartIds->GetNumberOfIds(); i++) { partId = this->UnstructuredPartIds->GetId(i); - vectors->SetName(description); output = static_cast(this->GetDataSetFromBlock(compositeOutput, partId)); - output->GetPointData()->AddArray(vectors); - if (!output->GetPointData()->GetVectors()) + if (output) { - output->GetPointData()->SetVectors(vectors); + output->GetPointData()->AddArray(vectors); + if (!output->GetPointData()->GetVectors()) + { + output->GetPointData()->SetVectors(vectors); + } } } } else { - vectors->SetName(description); output = static_cast( this->GetDataSetFromBlock(compositeOutput, this->NumberOfGeometryParts)); output->GetPointData()->AddArray(vectors); @@ -856,6 +859,7 @@ int vtkEnSight6Reader::ReadVectorsPerNode(const char* fileName, const char* desc vectors = vtkFloatArray::New(); vectors->SetNumberOfTuples(numPts); vectors->SetNumberOfComponents(3); + vectors->SetName(description); vectors->Allocate(numPts * 3); for (k = 0; k < 3; k++) @@ -882,7 +886,6 @@ int vtkEnSight6Reader::ReadVectorsPerNode(const char* fileName, const char* desc } } } - vectors->SetName(description); output->GetPointData()->AddArray(vectors); if (!output->GetPointData()->GetVectors()) { @@ -987,6 +990,7 @@ int vtkEnSight6Reader::ReadTensorsPerNode(const char* fileName, const char* desc tensors = vtkFloatArray::New(); tensors->SetNumberOfTuples(numPts); tensors->SetNumberOfComponents(6); + tensors->SetName(description); tensors->Allocate(numPts * 6); for (i = 0; i < numLines; i++) { @@ -999,8 +1003,11 @@ int vtkEnSight6Reader::ReadTensorsPerNode(const char* fileName, const char* desc for (i = 0; i < this->UnstructuredPartIds->GetNumberOfIds(); i++) { partId = this->UnstructuredPartIds->GetId(i); - tensors->SetName(description); - this->GetDataSetFromBlock(compositeOutput, partId)->GetPointData()->AddArray(tensors); + output = this->GetDataSetFromBlock(compositeOutput, partId); + if (output) + { + output->GetPointData()->AddArray(tensors); + } } tensors->Delete(); } @@ -1022,6 +1029,7 @@ int vtkEnSight6Reader::ReadTensorsPerNode(const char* fileName, const char* desc tensors = vtkFloatArray::New(); tensors->SetNumberOfTuples(numPts); tensors->SetNumberOfComponents(6); + tensors->SetName(description); tensors->Allocate(numPts * 6); for (k = 0; k < 6; k++) @@ -1048,7 +1056,6 @@ int vtkEnSight6Reader::ReadTensorsPerNode(const char* fileName, const char* desc } } } - tensors->SetName(description); output->GetPointData()->AddArray(tensors); tensors->Delete(); lineRead = this->ReadNextDataLine(line); @@ -1309,6 +1316,7 @@ int vtkEnSight6Reader::ReadVectorsPerElement(const char* fileName, const char* d this->ReadNextDataLine(line); // element type or "block" vectors->SetNumberOfTuples(numCells); vectors->SetNumberOfComponents(3); + vectors->SetName(description); vectors->Allocate(numCells * 3); // need to find out from CellIds how many cells we have of this element @@ -1382,7 +1390,6 @@ int vtkEnSight6Reader::ReadVectorsPerElement(const char* fileName, const char* d lineRead = this->ReadNextDataLine(line); } // end while } // end else - vectors->SetName(description); output->GetCellData()->AddArray(vectors); if (!output->GetCellData()->GetVectors()) { @@ -1481,6 +1488,7 @@ int vtkEnSight6Reader::ReadTensorsPerElement(const char* fileName, const char* d this->ReadNextDataLine(line); // element type or "block" tensors->SetNumberOfTuples(numCells); tensors->SetNumberOfComponents(6); + tensors->SetName(description); tensors->Allocate(numCells * 6); // need to find out from CellIds how many cells we have of this element @@ -1543,7 +1551,6 @@ int vtkEnSight6Reader::ReadTensorsPerElement(const char* fileName, const char* d lineRead = this->ReadNextDataLine(line); } // end while } // end else - tensors->SetName(description); output->GetCellData()->AddArray(tensors); tensors->Delete(); } -- GitLab From 587d67445e9b9222bcf9201d78d9e2a0c8e73f43 Mon Sep 17 00:00:00 2001 From: Thomas Galland Date: Wed, 18 May 2022 16:30:20 +0200 Subject: [PATCH 0305/1015] Add new movement style for VR --- Rendering/Core/vtkRenderWindowInteractor3D.h | 25 ++++- Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx | 6 +- Rendering/OpenVR/vtk_openvr_actions.json | 51 ++++++--- .../OpenVR/vtk_openvr_binding_knuckles.json | 30 ++++++ Rendering/OpenXR/CMakeLists.txt | 2 +- Rendering/OpenXR/vtkOpenXRInteractorStyle.cxx | 8 +- Rendering/OpenXR/vtk_openxr_actions.json | 83 +++++++++----- ....json => vtk_openxr_binding_knuckles.json} | 33 +++--- Rendering/VR/vtkVRInteractorStyle.cxx | 101 +++++++++++++++++- Rendering/VR/vtkVRInteractorStyle.h | 6 ++ Rendering/VR/vtkVRRenderWindowInteractor.cxx | 48 +++++++++ Rendering/VR/vtkVRRenderWindowInteractor.h | 25 ++++- 12 files changed, 348 insertions(+), 70 deletions(-) rename Rendering/OpenXR/{vtk_openxr_binding_valve_index_controller.json => vtk_openxr_binding_knuckles.json} (69%) diff --git a/Rendering/Core/vtkRenderWindowInteractor3D.h b/Rendering/Core/vtkRenderWindowInteractor3D.h index 25eab4118481..1da54c2a0012 100644 --- a/Rendering/Core/vtkRenderWindowInteractor3D.h +++ b/Rendering/Core/vtkRenderWindowInteractor3D.h @@ -244,11 +244,32 @@ public: ///@{ /** - * Set/Get the optional scale translation to map world coordinates into the - * 3D physical space (meters, 0,0,0). + * Set/get position of the physical coordinate system -Z axis in world coordinates. + */ + virtual void SetPhysicalViewDirection(double, double, double){}; + virtual double* GetPhysicalViewDirection() { return nullptr; }; + ///@} + + ///@{ + /** + * Set/get position of the physical coordinate system +Y axis in world coordinates. + */ + virtual void SetPhysicalViewUp(double, double, double){}; + virtual double* GetPhysicalViewUp() { return nullptr; }; + ///@} + + ///@{ + /** + * Set/get position of the physical coordinate system origin in world coordinates. */ virtual void SetPhysicalTranslation(vtkCamera*, double, double, double) {} virtual double* GetPhysicalTranslation(vtkCamera*) { return nullptr; } + ///@} + + ///@{ + /** + * Set/get the physical scale (world / physical distance ratio) + */ virtual void SetPhysicalScale(double) {} virtual double GetPhysicalScale() { return 1.0; } ///@} diff --git a/Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx b/Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx index b83bf8455431..67a465b57f09 100644 --- a/Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx +++ b/Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx @@ -29,12 +29,14 @@ void vtkOpenVRInteractorStyle::SetupActions(vtkRenderWindowInteractor* iren) if (oiren) { - oiren->AddAction("/actions/vtk/in/StartMovement", vtkCommand::ViewerMovement3DEvent, false); + oiren->AddAction("/actions/vtk/in/Elevation", vtkCommand::ViewerMovement3DEvent, true); oiren->AddAction("/actions/vtk/in/Movement", vtkCommand::ViewerMovement3DEvent, true); oiren->AddAction("/actions/vtk/in/NextCameraPose", vtkCommand::NextPose3DEvent, false); - oiren->AddAction("/actions/vtk/in/TriggerAction", vtkCommand::Select3DEvent, false); oiren->AddAction("/actions/vtk/in/PositionProp", vtkCommand::PositionProp3DEvent, false); oiren->AddAction("/actions/vtk/in/ShowMenu", vtkCommand::Menu3DEvent, false); + oiren->AddAction("/actions/vtk/in/StartElevation", vtkCommand::ViewerMovement3DEvent, false); + oiren->AddAction("/actions/vtk/in/StartMovement", vtkCommand::ViewerMovement3DEvent, false); + oiren->AddAction("/actions/vtk/in/TriggerAction", vtkCommand::Select3DEvent, false); } } diff --git a/Rendering/OpenVR/vtk_openvr_actions.json b/Rendering/OpenVR/vtk_openvr_actions.json index 82747f6e3dc0..780855c34a4e 100644 --- a/Rendering/OpenVR/vtk_openvr_actions.json +++ b/Rendering/OpenVR/vtk_openvr_actions.json @@ -1,43 +1,59 @@ { "actions": [ { - "name": "/actions/vtk/in/NextCameraPose", + "name": "/actions/vtk/in/BackThickCrop", "type": "boolean" }, { - "name": "/actions/vtk/in/TriggerAction", + "name": "/actions/vtk/in/Elevation", + "type": "vector2" + }, + { + "name": "/actions/vtk/in/ForwardThickCrop", + "type": "boolean" + }, + { + "name": "/actions/vtk/in/LeftGripAction", + "type": "boolean" + }, + { + "name": "/actions/vtk/in/Movement", + "type": "vector2" + }, + { + "name": "/actions/vtk/in/NextCameraPose", "type": "boolean" }, { "name": "/actions/vtk/in/PositionProp", "type": "boolean" }, + { + "name": "/actions/vtk/in/RightGripAction", + "type": "boolean" + }, { "name": "/actions/vtk/in/ShowMenu", "type": "boolean" }, { - "name": "/actions/vtk/in/StartMovement", + "name": "/actions/vtk/in/ShowNavigationPanel", "type": "boolean" }, { - "name": "/actions/vtk/in/Movement", - "type": "vector2" + "name": "/actions/vtk/in/StartElevation", + "type": "boolean" }, { - "name": "/actions/vtk/in/LeftGripAction", + "name": "/actions/vtk/in/StartMovement", "type": "boolean" }, { - "name": "/actions/vtk/in/RightGripAction", + "name": "/actions/vtk/in/TriggerAction", "type": "boolean" } ], "default_bindings": [ - { - "binding_url": "vtk_openvr_binding_oculus_touch.json", - "controller_type": "generic" - }, { "binding_url": "vtk_openvr_binding_hpmotioncontroller.json", "controller_type": "hpmotioncontroller" @@ -57,14 +73,19 @@ ], "localization": [ { + "/actions/vtk/in/BackThickCrop": "Move Thick Crop Back", + "/actions/vtk/in/Elevation": "Trackpad Elevation", + "/actions/vtk/in/ForwardThickCrop": "Move Thick Crop Forward", "/actions/vtk/in/LeftGripAction": "Left Grip Action", + "/actions/vtk/in/Movement": "Movement", + "/actions/vtk/in/NextCameraPose": "Next Camera Pose", + "/actions/vtk/in/PositionProp": "Position Prop", "/actions/vtk/in/RightGripAction": "Right Grip Action", - "/actions/vtk/in/AnalogInput": "Movement", - "/actions/vtk/in/StartMovement": "Start Movement", "/actions/vtk/in/ShowMenu": "Show Menu", - "/actions/vtk/in/NextCameraPose": "Next Camera Pose", + "/actions/vtk/in/ShowNavigationPanel": "Show Navigation Panel", + "/actions/vtk/in/StartElevation": "Start Elevation", + "/actions/vtk/in/StartMovement": "Start Movement", "/actions/vtk/in/TriggerAction": "Trigger Action", - "/actions/vtk/in/PositionProp": "Position Prop", "language_tag": "en_US" } ] diff --git a/Rendering/OpenVR/vtk_openvr_binding_knuckles.json b/Rendering/OpenVR/vtk_openvr_binding_knuckles.json index ffdfa8ee42e7..e52f3e9ea367 100644 --- a/Rendering/OpenVR/vtk_openvr_binding_knuckles.json +++ b/Rendering/OpenVR/vtk_openvr_binding_knuckles.json @@ -17,6 +17,18 @@ "mode": "joystick", "path": "/user/hand/left/input/thumbstick" }, + { + "inputs": { + "click": { + "output": "/actions/vtk/in/startelevation" + }, + "position": { + "output": "/actions/vtk/in/elevation" + } + }, + "mode": "joystick", + "path": "/user/hand/right/input/thumbstick" + }, { "inputs": { "value": { @@ -61,6 +73,24 @@ }, "mode": "button", "path": "/user/hand/right/input/trigger" + }, + { + "inputs": { + "click": { + "output": "/actions/vtk/in/leftgripaction" + } + }, + "mode": "button", + "path": "/user/hand/left/input/a" + }, + { + "inputs": { + "click": { + "output": "/actions/vtk/in/rightgripaction" + } + }, + "mode": "button", + "path": "/user/hand/right/input/a" } ] } diff --git a/Rendering/OpenXR/CMakeLists.txt b/Rendering/OpenXR/CMakeLists.txt index 9279b14f75ac..00a3b1522449 100644 --- a/Rendering/OpenXR/CMakeLists.txt +++ b/Rendering/OpenXR/CMakeLists.txt @@ -27,7 +27,7 @@ set(openxr_input_files vtk_openxr_actions.json vtk_openxr_binding_htc_vive_controller.json vtk_openxr_binding_khr_simple_controller.json - vtk_openxr_binding_valve_index_controller.json + vtk_openxr_binding_knuckles.json ) foreach(inputfile ${openxr_input_files}) diff --git a/Rendering/OpenXR/vtkOpenXRInteractorStyle.cxx b/Rendering/OpenXR/vtkOpenXRInteractorStyle.cxx index 186102615d9a..1e433e8f5931 100644 --- a/Rendering/OpenXR/vtkOpenXRInteractorStyle.cxx +++ b/Rendering/OpenXR/vtkOpenXRInteractorStyle.cxx @@ -27,11 +27,13 @@ void vtkOpenXRInteractorStyle::SetupActions(vtkRenderWindowInteractor* iren) if (oiren) { - oiren->AddAction("startmovement", vtkCommand::ViewerMovement3DEvent); + oiren->AddAction("elevation", vtkCommand::ViewerMovement3DEvent); oiren->AddAction("movement", vtkCommand::ViewerMovement3DEvent); - oiren->AddAction("nextcamerapose", vtkCommand::NextPose3DEvent); - oiren->AddAction("triggeraction", vtkCommand::Select3DEvent); + oiren->AddAction("nextcameraPose", vtkCommand::NextPose3DEvent); oiren->AddAction("positionprop", vtkCommand::PositionProp3DEvent); oiren->AddAction("showmenu", vtkCommand::Menu3DEvent); + oiren->AddAction("startelevation", vtkCommand::ViewerMovement3DEvent); + oiren->AddAction("startmovement", vtkCommand::ViewerMovement3DEvent); + oiren->AddAction("triggeraction", vtkCommand::Select3DEvent); } } diff --git a/Rendering/OpenXR/vtk_openxr_actions.json b/Rendering/OpenXR/vtk_openxr_actions.json index 509d86b778fe..e74dd1186555 100644 --- a/Rendering/OpenXR/vtk_openxr_actions.json +++ b/Rendering/OpenXR/vtk_openxr_actions.json @@ -1,23 +1,31 @@ { "actions": [ { - "name": "nextcamerapose", + "name": "backthickcrop", "type": "boolean" }, { - "name": "triggeraction", - "type": "boolean" + "name": "elevation", + "type": "vector2" }, { - "name": "positionprop", + "name": "forwardthickcrop", "type": "boolean" }, { - "name": "showmenu", - "type": "boolean" + "name": "handpose", + "type": "pose" }, { - "name": "startmovement", + "name": "handposehandgrip", + "type": "pose" + }, + { + "name": "haptic", + "type": "vibration" + }, + { + "name": "leftgripaction", "type": "boolean" }, { @@ -25,7 +33,11 @@ "type": "vector2" }, { - "name": "leftgripaction", + "name": "nextcamerapose", + "type": "boolean" + }, + { + "name": "positionprop", "type": "boolean" }, { @@ -33,20 +45,36 @@ "type": "boolean" }, { - "name": "handpose", - "type": "pose" + "name": "showmenu", + "type": "boolean" }, { - "name": "handposehandgrip", - "type": "pose" + "name": "shownavigationpanel", + "type": "boolean" }, { "name": "squeezeforce", "type": "float" }, { - "name": "haptic", - "type": "vibration" + "name": "startelevation", + "type": "boolean" + }, + { + "name": "startmovement", + "type": "boolean" + }, + { + "name": "thickcropdirection", + "type": "vector2" + }, + { + "name": "thickcropstart", + "type": "boolean" + }, + { + "name": "triggeraction", + "type": "boolean" } ], "default_bindings": [ @@ -59,8 +87,8 @@ "controller_type": "vive_controller" }, { - "binding_url": "vtk_openxr_binding_valve_index_controller.json", - "controller_type": "valve_index_controller" + "binding_url": "vtk_openxr_binding_knuckles.json", + "controller_type": "knuckles" } ], "action_sets": [ @@ -71,18 +99,25 @@ ], "localization": [ { + "backthickcrop": "Move Thick Crop Back", + "elevation": "Elevation", + "forwardthickcrop": "Move Thick Crop Forward", + "handpose": "Hand Pose", + "handposehandgrip": "Hand Pose Hand Grip", + "haptic": "Haptic Vibration", "leftgripaction": "Left Grip Action", - "rightgripaction": "Right Grip Action", - "movement": "Movement", - "startmovement": "Start Movement", - "showmenu": "Show Menu", + "movement": "Trackpad Movement", "nextcamerapose": "Next Camera Pose", - "triggeraction": "Trigger Action", "positionprop": "Position Prop", - "handpose": "Hand Pose", - "handposehandgrip": "Hand Pose Hand Grip", + "rightgripaction": "Right Grip Action", + "showmenu": "Show Menu", + "shownavigationpanel": "Show Navigation Panel", "squeezeforce": "Squeeze Force", - "haptic": "Haptic Vibration", + "startelevation": "Start Elevation", + "startmovement": "Start Movement", + "thickcropdirection": "what direction to move", + "thickcropstart": "Start moving the trick crop", + "triggeraction": "Trigger Action", "language_tag": "en_US" } ] diff --git a/Rendering/OpenXR/vtk_openxr_binding_valve_index_controller.json b/Rendering/OpenXR/vtk_openxr_binding_knuckles.json similarity index 69% rename from Rendering/OpenXR/vtk_openxr_binding_valve_index_controller.json rename to Rendering/OpenXR/vtk_openxr_binding_knuckles.json index 4cf7639bcda6..8d7423210e06 100644 --- a/Rendering/OpenXR/vtk_openxr_binding_valve_index_controller.json +++ b/Rendering/OpenXR/vtk_openxr_binding_knuckles.json @@ -29,39 +29,34 @@ "output": "movement" } }, - "path": "/user/hand/right/input/trackpad" + "path": "/user/hand/left/input/thumbstick" }, { "inputs": { - "pose": { - "output": "handposehandgrip" - } - }, - "path": "/user/hand/right/input/squeeze" - }, - { - "inputs": { - "pose": { - "output": "handposehandgrip" + "touch": { + "output": "startelevation" + }, + "position": { + "output": "elevation" } }, - "path": "/user/hand/left/input/squeeze" + "path": "/user/hand/right/input/thumbstick" }, { "inputs": { "click": { - "output": "showmenu" + "output": "leftgripaction" } }, - "path": "/user/hand/right/input/a" + "path": "/user/hand/left/input/a" }, { "inputs": { "click": { - "output": "nextcamerapose" + "output": "rightgripaction" } }, - "path": "/user/hand/left/input/trigger" + "path": "/user/hand/right/input/a" }, { "inputs": { @@ -73,11 +68,11 @@ }, { "inputs": { - "force": { - "output": "squeezeforce" + "click": { + "output": "showmenu" } }, - "path": "/user/hand/right/input/squeeze" + "path": "/user/hand/right/input/b" } ] } diff --git a/Rendering/VR/vtkVRInteractorStyle.cxx b/Rendering/VR/vtkVRInteractorStyle.cxx index 79aefe2c6311..d6b16ed0d064 100644 --- a/Rendering/VR/vtkVRInteractorStyle.cxx +++ b/Rendering/VR/vtkVRInteractorStyle.cxx @@ -19,9 +19,11 @@ PURPOSE. See the above copyright notice for more information. #include "vtkCamera.h" #include "vtkCellPicker.h" #include "vtkInformation.h" +#include "vtkMatrix3x3.h" #include "vtkPlane.h" #include "vtkPolyDataMapper.h" #include "vtkProperty.h" +#include "vtkQuaternion.h" #include "vtkRenderer.h" #include "vtkSelection.h" #include "vtkSelectionNode.h" @@ -212,7 +214,7 @@ void vtkVRInteractorStyle::OnViewerMovement3D(vtkEventData* edata) this->EndAction(VTKIS_DOLLY, edd); return; } - this->Dolly3D(edata); + this->Move3D(edd); this->InvokeEvent(vtkCommand::InteractionEvent, nullptr); return; } @@ -230,6 +232,12 @@ void vtkVRInteractorStyle::OnMove3D(vtkEventData* edata) // Retrieve device type int idev = static_cast(edd->GetDevice()); + if (edd->GetDevice() == vtkEventDataDevice::HeadMountedDisplay) + { + // edd->GetWorldOrientation(this->HeadsetWori); + edd->GetWorldDirection(this->HeadsetDir); + } + // Update current state int x = this->Interactor->GetEventPosition()[0]; int y = this->Interactor->GetEventPosition()[1]; @@ -246,7 +254,7 @@ void vtkVRInteractorStyle::OnMove3D(vtkEventData* edata) break; case VTKIS_DOLLY: this->FindPokedRenderer(x, y); - this->Dolly3D(edata); + this->Move3D(edd); this->InvokeEvent(vtkCommand::InteractionEvent, nullptr); break; case VTKIS_CLIP: @@ -653,6 +661,95 @@ void vtkVRInteractorStyle::Clip(vtkEventDataDevice3D* ed) this->ClippingPlanes[idev]->SetOrigin(wpos[0], wpos[1], wpos[2]); } +//------------------------------------------------------------------------------ +void vtkVRInteractorStyle::Move3D(vtkEventDataDevice3D* edd) +{ + if (this->CurrentRenderer == nullptr) + { + return; + } + + vtkVRRenderWindowInteractor* rwi = vtkVRRenderWindowInteractor::SafeDownCast(this->Interactor); + + // Get joystick position + if (edd->GetType() == vtkCommand::ViewerMovement3DEvent) + { + edd->GetTrackPadPosition(this->LastTrackPadPosition); + } + + // Get current translation of the scene + double* sceneTrans = rwi->GetPhysicalTranslation(this->CurrentRenderer->GetActiveCamera()); + + // Get the physical view up vector (in world coordinates) + double* physicalViewUp = rwi->GetPhysicalViewUp(); + vtkMath::Normalize(physicalViewUp); + + this->LastDolly3DEventTime->StopTimer(); + + // Compute travelled distance during elapsed time + double physicalScale = rwi->GetPhysicalScale(); + double distanceTravelledWorld = this->DollyPhysicalSpeed * /* m/sec */ + physicalScale * /* world/physical */ + this->LastDolly3DEventTime->GetElapsedTime(); /* sec */ + + this->LastDolly3DEventTime->StartTimer(); + + // Camera movement ("XY" plane) + if (edd->GetDevice() == vtkEventDataDevice::LeftController) + { + // Get the translation according to the headset view direction vector + // projected on the "XY" (ground) plan. + double viewTrans[3] = { physicalViewUp[0], physicalViewUp[1], physicalViewUp[2] }; + vtkMath::MultiplyScalar(viewTrans, vtkMath::Dot(this->HeadsetDir, physicalViewUp)); + vtkMath::Subtract(this->HeadsetDir, viewTrans, viewTrans); + vtkMath::Normalize(viewTrans); + + // Get the translation according to the headset "right" direction vector + // projected on the "XY" (ground) plan. + double rightTrans[3] = { 0.0, 0.0, 0.0 }; + vtkMath::Cross(viewTrans, physicalViewUp, rightTrans); + vtkMath::Normalize(rightTrans); + + // Scale the view direction translation according to the up / down thumbstick position of the + // left controller. + double scaledDistanceViewDir = this->LastTrackPadPosition[1] * distanceTravelledWorld; + vtkMath::MultiplyScalar(viewTrans, scaledDistanceViewDir); + + // Scale the right direction translation according to the left / right thumbstick position of + // the left controller. + double scaledDistanceRightDir = this->LastTrackPadPosition[0] * distanceTravelledWorld; + vtkMath::MultiplyScalar(rightTrans, scaledDistanceRightDir); + + // Compute and set new translation of the scene + double newSceneTrans[3] = { 0.0, 0.0, 0.0 }; + vtkMath::Add(viewTrans, rightTrans, newSceneTrans); + vtkMath::Subtract(sceneTrans, newSceneTrans, newSceneTrans); + rwi->SetPhysicalTranslation(this->CurrentRenderer->GetActiveCamera(), newSceneTrans[0], + newSceneTrans[1], newSceneTrans[2]); + } + + // Camera elevation ("Z" axis) + else if (edd->GetDevice() == vtkEventDataDevice::RightController) + { + // Get the translation according to the "Z" (up) world coordinates axis, + // scaled according to the up / down thumbstick position of the right controller. + double scaledDistance = this->LastTrackPadPosition[1] * distanceTravelledWorld; + double upTrans[3] = { physicalViewUp[0], physicalViewUp[1], physicalViewUp[2] }; + vtkMath::MultiplyScalar(upTrans, scaledDistance); + + // Compute and set new translation of the scene + double newSceneTrans[3] = { 0.0, 0.0, 0.0 }; + vtkMath::Subtract(sceneTrans, upTrans, newSceneTrans); + rwi->SetPhysicalTranslation(this->CurrentRenderer->GetActiveCamera(), newSceneTrans[0], + newSceneTrans[1], newSceneTrans[2]); + } + + if (this->AutoAdjustCameraClippingRange) + { + this->CurrentRenderer->ResetCameraClippingRange(); + } +} + //------------------------------------------------------------------------------ // Utility routines //------------------------------------------------------------------------------ diff --git a/Rendering/VR/vtkVRInteractorStyle.h b/Rendering/VR/vtkVRInteractorStyle.h index bc2fe4f59ec3..cfd46971e93b 100644 --- a/Rendering/VR/vtkVRInteractorStyle.h +++ b/Rendering/VR/vtkVRInteractorStyle.h @@ -95,6 +95,9 @@ public: virtual void LoadNextCameraPose() = 0; ///@} + // TODO + void Move3D(vtkEventDataDevice3D*); + ///@{ /** * Map controller inputs to actions. @@ -247,6 +250,9 @@ protected: std::vector> InteractionProps; std::vector> ClippingPlanes; + // Store headset world orientation + double HeadsetDir[3] = { 0, 0, 0 }; + private: vtkVRInteractorStyle(const vtkVRInteractorStyle&) = delete; void operator=(const vtkVRInteractorStyle&) = delete; diff --git a/Rendering/VR/vtkVRRenderWindowInteractor.cxx b/Rendering/VR/vtkVRRenderWindowInteractor.cxx index e1f65fff2e9b..7c979f9fe646 100644 --- a/Rendering/VR/vtkVRRenderWindowInteractor.cxx +++ b/Rendering/VR/vtkVRRenderWindowInteractor.cxx @@ -126,6 +126,54 @@ void vtkVRRenderWindowInteractor::ExitCallback() this->TerminateApp(); } +//------------------------------------------------------------------------------ +void vtkVRRenderWindowInteractor::SetPhysicalViewDirection(double x, double y, double z) +{ + vtkVRRenderWindow* win = vtkVRRenderWindow::SafeDownCast(this->RenderWindow); + if (win) + { + win->SetPhysicalViewDirection(x, y, z); + } +} + +//------------------------------------------------------------------------------ +double* vtkVRRenderWindowInteractor::GetPhysicalViewDirection() +{ + vtkVRRenderWindow* win = vtkVRRenderWindow::SafeDownCast(this->RenderWindow); + if (win) + { + return win->GetPhysicalViewDirection(); + } + else + { + return nullptr; + } +} + +//------------------------------------------------------------------------------ +void vtkVRRenderWindowInteractor::SetPhysicalViewUp(double x, double y, double z) +{ + vtkVRRenderWindow* win = vtkVRRenderWindow::SafeDownCast(this->RenderWindow); + if (win) + { + win->SetPhysicalViewUp(x, y, z); + } +} + +//------------------------------------------------------------------------------ +double* vtkVRRenderWindowInteractor::GetPhysicalViewUp() +{ + vtkVRRenderWindow* win = vtkVRRenderWindow::SafeDownCast(this->RenderWindow); + if (win) + { + return win->GetPhysicalViewUp(); + } + else + { + return nullptr; + } +} + //------------------------------------------------------------------------------ void vtkVRRenderWindowInteractor::SetPhysicalTranslation( vtkCamera*, double t1, double t2, double t3) diff --git a/Rendering/VR/vtkVRRenderWindowInteractor.h b/Rendering/VR/vtkVRRenderWindowInteractor.h index 096c1b69415c..1d382bd81a5d 100644 --- a/Rendering/VR/vtkVRRenderWindowInteractor.h +++ b/Rendering/VR/vtkVRRenderWindowInteractor.h @@ -70,11 +70,32 @@ public: ///@{ /** - * Set/Get the optional translation to map world coordinates into the - * 3D physical space (meters, 0,0,0). + * Set/get position of the physical coordinate system -Z axis in world coordinates. + */ + void SetPhysicalViewDirection(double, double, double) override; + double* GetPhysicalViewDirection() override; + ///@} + + ///@{ + /** + * Set/get position of the physical coordinate system +Y axis in world coordinates. + */ + void SetPhysicalViewUp(double, double, double) override; + double* GetPhysicalViewUp() override; + ///@} + + ///@{ + /** + * Set/get position of the physical coordinate system origin in world coordinates. */ void SetPhysicalTranslation(vtkCamera*, double, double, double) override; double* GetPhysicalTranslation(vtkCamera*) override; + ///@} + + ///@{ + /** + * Set/get the physical scale (world / physical distance ratio) + */ void SetPhysicalScale(double) override; double GetPhysicalScale() override; ///@} -- GitLab From ca4441c8c6b4188c0c4b4026ddd17887bca61d09 Mon Sep 17 00:00:00 2001 From: Thomas Galland Date: Tue, 31 May 2022 17:30:38 +0200 Subject: [PATCH 0306/1015] Desunite ground movement and elevation in VR --- Common/Core/vtkCommand.h | 3 +- Rendering/Core/vtkInteractorStyle.cxx | 2 + Rendering/Core/vtkInteractorStyle.h | 2 + Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx | 4 +- Rendering/VR/vtkVRInteractorStyle.cxx | 236 ++++++++++++++---- Rendering/VR/vtkVRInteractorStyle.h | 22 ++ 6 files changed, 215 insertions(+), 54 deletions(-) diff --git a/Common/Core/vtkCommand.h b/Common/Core/vtkCommand.h index 850e3dc3f0e9..0586c73056a2 100644 --- a/Common/Core/vtkCommand.h +++ b/Common/Core/vtkCommand.h @@ -379,7 +379,8 @@ _vtk_add_event(Clip3DEvent) \ _vtk_add_event(PositionProp3DEvent) \ _vtk_add_event(Pick3DEvent) \ - _vtk_add_event(Select3DEvent) + _vtk_add_event(Select3DEvent) \ + _vtk_add_event(Elevation3DEvent) // clang-format on #define vtkEventDeclarationMacro(_enum_name) \ diff --git a/Rendering/Core/vtkInteractorStyle.cxx b/Rendering/Core/vtkInteractorStyle.cxx index 10ddf4ceabb9..a04bd80cdc83 100644 --- a/Rendering/Core/vtkInteractorStyle.cxx +++ b/Rendering/Core/vtkInteractorStyle.cxx @@ -267,6 +267,7 @@ void vtkInteractorStyle::SetInteractor(vtkRenderWindowInteractor* i) i->AddObserver(vtkCommand::PositionProp3DEvent, this->EventCallbackCommand, this->Priority); i->AddObserver(vtkCommand::Pick3DEvent, this->EventCallbackCommand, this->Priority); i->AddObserver(vtkCommand::Menu3DEvent, this->EventCallbackCommand, this->Priority); + i->AddObserver(vtkCommand::Elevation3DEvent, this->EventCallbackCommand, this->Priority); i->AddObserver(vtkCommand::DropFilesEvent, this->EventCallbackCommand, this->Priority); i->AddObserver(vtkCommand::UpdateDropLocationEvent, this->EventCallbackCommand, this->Priority); @@ -1479,6 +1480,7 @@ void vtkInteractorStyle::ProcessEvents( vtkISEventDataMacro(Pick3D); vtkISEventDataMacro(PositionProp3D); vtkISEventDataMacro(Clip3D); + vtkISEventDataMacro(Elevation3D); case vtkCommand::DropFilesEvent: if (self->HandleObservers && self->HasObserver(vtkCommand::DropFilesEvent)) diff --git a/Rendering/Core/vtkInteractorStyle.h b/Rendering/Core/vtkInteractorStyle.h index 9bb640b2c32b..8a270f5fff62 100644 --- a/Rendering/Core/vtkInteractorStyle.h +++ b/Rendering/Core/vtkInteractorStyle.h @@ -119,6 +119,7 @@ #define VTKIS_MENU 17 // invoke an application menu #define VTKIS_GESTURE 18 // touch interaction in progress #define VTKIS_ENV_ROTATE 19 // rotate the renderer environment texture +#define VTKIS_ELEVATION 20 #define VTKIS_ANIM_OFF 0 #define VTKIS_ANIM_ON 1 @@ -254,6 +255,7 @@ public: virtual void OnNextPose3D(vtkEventData*) {} virtual void OnPositionProp3D(vtkEventData*) {} virtual void OnViewerMovement3D(vtkEventData*) {} + virtual void OnElevation3D(vtkEventData*) {} /** * OnChar is triggered when an ASCII key is pressed. Some basic key presses diff --git a/Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx b/Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx index 67a465b57f09..a3cc0fcf7c0d 100644 --- a/Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx +++ b/Rendering/OpenVR/vtkOpenVRInteractorStyle.cxx @@ -29,12 +29,12 @@ void vtkOpenVRInteractorStyle::SetupActions(vtkRenderWindowInteractor* iren) if (oiren) { - oiren->AddAction("/actions/vtk/in/Elevation", vtkCommand::ViewerMovement3DEvent, true); + oiren->AddAction("/actions/vtk/in/Elevation", vtkCommand::Elevation3DEvent, true); oiren->AddAction("/actions/vtk/in/Movement", vtkCommand::ViewerMovement3DEvent, true); oiren->AddAction("/actions/vtk/in/NextCameraPose", vtkCommand::NextPose3DEvent, false); oiren->AddAction("/actions/vtk/in/PositionProp", vtkCommand::PositionProp3DEvent, false); oiren->AddAction("/actions/vtk/in/ShowMenu", vtkCommand::Menu3DEvent, false); - oiren->AddAction("/actions/vtk/in/StartElevation", vtkCommand::ViewerMovement3DEvent, false); + oiren->AddAction("/actions/vtk/in/StartElevation", vtkCommand::Elevation3DEvent, false); oiren->AddAction("/actions/vtk/in/StartMovement", vtkCommand::ViewerMovement3DEvent, false); oiren->AddAction("/actions/vtk/in/TriggerAction", vtkCommand::Select3DEvent, false); } diff --git a/Rendering/VR/vtkVRInteractorStyle.cxx b/Rendering/VR/vtkVRInteractorStyle.cxx index d6b16ed0d064..eb6ee4ff7c78 100644 --- a/Rendering/VR/vtkVRInteractorStyle.cxx +++ b/Rendering/VR/vtkVRInteractorStyle.cxx @@ -57,9 +57,9 @@ vtkVRInteractorStyle::vtkVRInteractorStyle() } // Create default inputs mapping - this->MapInputToAction(vtkCommand::ViewerMovement3DEvent, VTKIS_DOLLY); - this->MapInputToAction(vtkCommand::Menu3DEvent, VTKIS_MENU); - this->MapInputToAction(vtkCommand::NextPose3DEvent, VTKIS_LOAD_CAMERA_POSE); + // this->MapInputToAction(vtkCommand::ViewerMovement3DEvent, VTKIS_DOLLY); // Not used it seems + // this->MapInputToAction(vtkCommand::Menu3DEvent, VTKIS_MENU); + // this->MapInputToAction(vtkCommand::NextPose3DEvent, VTKIS_LOAD_CAMERA_POSE); this->MapInputToAction(vtkCommand::Select3DEvent, VTKIS_POSITION_PROP); this->MenuCommand->SetClientData(this); @@ -214,7 +214,83 @@ void vtkVRInteractorStyle::OnViewerMovement3D(vtkEventData* edata) this->EndAction(VTKIS_DOLLY, edd); return; } - this->Move3D(edd); + + if (this->Style == MovementStyle::FLY_STYLE) + { + this->Dolly3D(edd); + } + else + { + this->Move3D(edd); + } + + this->InvokeEvent(vtkCommand::InteractionEvent, nullptr); + return; + } +} + +//------------------------------------------------------------------------------ +void vtkVRInteractorStyle::OnElevation3D(vtkEventData* edata) +{ + // This movement is only defined in the case of grounded style + if (this->Style != MovementStyle::GROUNDED_STYLE) + { + return; + } + + vtkEventDataDevice3D* edd = edata->GetAsEventDataDevice3D(); + if (!edd) + { + return; + } + + // Retrieve device type + int idev = static_cast(edd->GetDevice()); + + // Update current state + int x = this->Interactor->GetEventPosition()[0]; + int y = this->Interactor->GetEventPosition()[1]; + this->FindPokedRenderer(x, y); + + // Set current state and interaction prop + this->InteractionProp = this->InteractionProps[idev]; + + double const* pos = edd->GetTrackPadPosition(); + + if (edd->GetAction() == vtkEventDataAction::Press) + { + this->StartAction(VTKIS_ELEVATION, edd); + this->LastTrackPadPosition[0] = 0.0; + this->LastTrackPadPosition[1] = 0.0; + return; + } + + if (edd->GetAction() == vtkEventDataAction::Release) + { + this->EndAction(VTKIS_ELEVATION, edd); + return; + } + + // If the input event is from a joystick and is away from the center then + // call start. When the joystick returns to the center, call end. + if (edd->GetInput() == vtkEventDataDeviceInput::Joystick && + this->InteractionState[idev] != VTKIS_ELEVATION && pos[1] != 0.0) + { + this->StartAction(VTKIS_ELEVATION, edd); + this->LastTrackPadPosition[0] = 0.0; + this->LastTrackPadPosition[1] = 0.0; + return; + } + + if (this->InteractionState[idev] == VTKIS_ELEVATION) + { + // Stop when returning to the center on the joystick + if (edd->GetInput() == vtkEventDataDeviceInput::Joystick && pos[1] == 0.0) + { + this->EndAction(VTKIS_ELEVATION, edd); + return; + } + this->Elevation3D(edd); this->InvokeEvent(vtkCommand::InteractionEvent, nullptr); return; } @@ -252,11 +328,11 @@ void vtkVRInteractorStyle::OnMove3D(vtkEventData* edata) this->PositionProp(edd); this->InvokeEvent(vtkCommand::InteractionEvent, nullptr); break; - case VTKIS_DOLLY: - this->FindPokedRenderer(x, y); - this->Move3D(edd); - this->InvokeEvent(vtkCommand::InteractionEvent, nullptr); - break; + // case VTKIS_DOLLY: // Don't really understand this + // this->FindPokedRenderer(x, y); + // //this->Move3D(edd); + // this->InvokeEvent(vtkCommand::InteractionEvent, nullptr); + // break; case VTKIS_CLIP: this->FindPokedRenderer(x, y); this->Clip(edd); @@ -489,6 +565,27 @@ void vtkVRInteractorStyle::EndDolly3D(vtkEventDataDevice3D* ed) this->LastDolly3DEventTime->StopTimer(); } +//------------------------------------------------------------------------------ +void vtkVRInteractorStyle::StartElevation3D(vtkEventDataDevice3D* ed) +{ + if (this->CurrentRenderer == nullptr) + { + return; + } + vtkEventDataDevice dev = ed->GetDevice(); + this->InteractionState[static_cast(dev)] = VTKIS_ELEVATION; + this->LastDolly3DEventTime->StartTimer(); +} + +//------------------------------------------------------------------------------ +void vtkVRInteractorStyle::EndElevation3D(vtkEventDataDevice3D* ed) +{ + vtkEventDataDevice dev = ed->GetDevice(); + this->InteractionState[static_cast(dev)] = VTKIS_NONE; + + this->LastDolly3DEventTime->StopTimer(); +} + //------------------------------------------------------------------------------ // Multitouch interaction methods //------------------------------------------------------------------------------ @@ -694,55 +791,86 @@ void vtkVRInteractorStyle::Move3D(vtkEventDataDevice3D* edd) this->LastDolly3DEventTime->StartTimer(); - // Camera movement ("XY" plane) - if (edd->GetDevice() == vtkEventDataDevice::LeftController) - { - // Get the translation according to the headset view direction vector - // projected on the "XY" (ground) plan. - double viewTrans[3] = { physicalViewUp[0], physicalViewUp[1], physicalViewUp[2] }; - vtkMath::MultiplyScalar(viewTrans, vtkMath::Dot(this->HeadsetDir, physicalViewUp)); - vtkMath::Subtract(this->HeadsetDir, viewTrans, viewTrans); - vtkMath::Normalize(viewTrans); + // Get the translation according to the headset view direction vector + // projected on the "XY" (ground) plan. + double viewTrans[3] = { physicalViewUp[0], physicalViewUp[1], physicalViewUp[2] }; + vtkMath::MultiplyScalar(viewTrans, vtkMath::Dot(this->HeadsetDir, physicalViewUp)); + vtkMath::Subtract(this->HeadsetDir, viewTrans, viewTrans); + vtkMath::Normalize(viewTrans); + + // Get the translation according to the headset "right" direction vector + // projected on the "XY" (ground) plan. + double rightTrans[3] = { 0.0, 0.0, 0.0 }; + vtkMath::Cross(viewTrans, physicalViewUp, rightTrans); + vtkMath::Normalize(rightTrans); + + // Scale the view direction translation according to the up / down thumbstick position of the left + // controller. + double scaledDistanceViewDir = this->LastTrackPadPosition[1] * distanceTravelledWorld; + vtkMath::MultiplyScalar(viewTrans, scaledDistanceViewDir); + + // Scale the right direction translation according to the left / right thumbstick position of the + // left controller. + double scaledDistanceRightDir = this->LastTrackPadPosition[0] * distanceTravelledWorld; + vtkMath::MultiplyScalar(rightTrans, scaledDistanceRightDir); + + // Compute and set new translation of the scene + double newSceneTrans[3] = { 0.0, 0.0, 0.0 }; + vtkMath::Add(viewTrans, rightTrans, newSceneTrans); + vtkMath::Subtract(sceneTrans, newSceneTrans, newSceneTrans); + rwi->SetPhysicalTranslation( + this->CurrentRenderer->GetActiveCamera(), newSceneTrans[0], newSceneTrans[1], newSceneTrans[2]); - // Get the translation according to the headset "right" direction vector - // projected on the "XY" (ground) plan. - double rightTrans[3] = { 0.0, 0.0, 0.0 }; - vtkMath::Cross(viewTrans, physicalViewUp, rightTrans); - vtkMath::Normalize(rightTrans); + if (this->AutoAdjustCameraClippingRange) + { + this->CurrentRenderer->ResetCameraClippingRange(); + } +} - // Scale the view direction translation according to the up / down thumbstick position of the - // left controller. - double scaledDistanceViewDir = this->LastTrackPadPosition[1] * distanceTravelledWorld; - vtkMath::MultiplyScalar(viewTrans, scaledDistanceViewDir); +//------------------------------------------------------------------------------ +void vtkVRInteractorStyle::Elevation3D(vtkEventDataDevice3D* edd) +{ + if (this->CurrentRenderer == nullptr) + { + return; + } - // Scale the right direction translation according to the left / right thumbstick position of - // the left controller. - double scaledDistanceRightDir = this->LastTrackPadPosition[0] * distanceTravelledWorld; - vtkMath::MultiplyScalar(rightTrans, scaledDistanceRightDir); + vtkVRRenderWindowInteractor* rwi = vtkVRRenderWindowInteractor::SafeDownCast(this->Interactor); - // Compute and set new translation of the scene - double newSceneTrans[3] = { 0.0, 0.0, 0.0 }; - vtkMath::Add(viewTrans, rightTrans, newSceneTrans); - vtkMath::Subtract(sceneTrans, newSceneTrans, newSceneTrans); - rwi->SetPhysicalTranslation(this->CurrentRenderer->GetActiveCamera(), newSceneTrans[0], - newSceneTrans[1], newSceneTrans[2]); + // Get joystick position + if (edd->GetType() == vtkCommand::Elevation3DEvent) + { + edd->GetTrackPadPosition(this->LastTrackPadPosition); } - // Camera elevation ("Z" axis) - else if (edd->GetDevice() == vtkEventDataDevice::RightController) - { - // Get the translation according to the "Z" (up) world coordinates axis, - // scaled according to the up / down thumbstick position of the right controller. - double scaledDistance = this->LastTrackPadPosition[1] * distanceTravelledWorld; - double upTrans[3] = { physicalViewUp[0], physicalViewUp[1], physicalViewUp[2] }; - vtkMath::MultiplyScalar(upTrans, scaledDistance); + // Get current translation of the scene + double* sceneTrans = rwi->GetPhysicalTranslation(this->CurrentRenderer->GetActiveCamera()); - // Compute and set new translation of the scene - double newSceneTrans[3] = { 0.0, 0.0, 0.0 }; - vtkMath::Subtract(sceneTrans, upTrans, newSceneTrans); - rwi->SetPhysicalTranslation(this->CurrentRenderer->GetActiveCamera(), newSceneTrans[0], - newSceneTrans[1], newSceneTrans[2]); - } + // Get the physical view up vector (in world coordinates) + double* physicalViewUp = rwi->GetPhysicalViewUp(); + vtkMath::Normalize(physicalViewUp); + + this->LastDolly3DEventTime->StopTimer(); + + // Compute travelled distance during elapsed time + double physicalScale = rwi->GetPhysicalScale(); + double distanceTravelledWorld = this->DollyPhysicalSpeed * /* m/sec */ + physicalScale * /* world/physical */ + this->LastDolly3DEventTime->GetElapsedTime(); /* sec */ + + this->LastDolly3DEventTime->StartTimer(); + + // Get the translation according to the "Z" (up) world coordinates axis, + // scaled according to the up / down thumbstick position of the right controller. + double scaledDistance = this->LastTrackPadPosition[1] * distanceTravelledWorld; + double upTrans[3] = { physicalViewUp[0], physicalViewUp[1], physicalViewUp[2] }; + vtkMath::MultiplyScalar(upTrans, scaledDistance); + + // Compute and set new translation of the scene + double newSceneTrans[3] = { 0.0, 0.0, 0.0 }; + vtkMath::Subtract(sceneTrans, upTrans, newSceneTrans); + rwi->SetPhysicalTranslation( + this->CurrentRenderer->GetActiveCamera(), newSceneTrans[0], newSceneTrans[1], newSceneTrans[2]); if (this->AutoAdjustCameraClippingRange) { @@ -794,6 +922,9 @@ void vtkVRInteractorStyle::StartAction(int state, vtkEventDataDevice3D* edata) case VTKIS_DOLLY: this->StartDolly3D(edata); break; + case VTKIS_ELEVATION: + this->StartElevation3D(edata); + break; case VTKIS_CLIP: this->StartClip(edata); break; @@ -823,6 +954,9 @@ void vtkVRInteractorStyle::EndAction(int state, vtkEventDataDevice3D* edata) case VTKIS_DOLLY: this->EndDolly3D(edata); break; + case VTKIS_ELEVATION: + this->EndElevation3D(edata); + break; case VTKIS_CLIP: this->EndClip(edata); break; diff --git a/Rendering/VR/vtkVRInteractorStyle.h b/Rendering/VR/vtkVRInteractorStyle.h index cfd46971e93b..6446b9e14e00 100644 --- a/Rendering/VR/vtkVRInteractorStyle.h +++ b/Rendering/VR/vtkVRInteractorStyle.h @@ -58,6 +58,7 @@ public: void OnViewerMovement3D(vtkEventData* edata) override; void OnMove3D(vtkEventData* edata) override; void OnMenu3D(vtkEventData* edata) override; + void OnElevation3D(vtkEventData* edata) override; ///@} ///@{ @@ -74,6 +75,8 @@ public: void EndClip(vtkEventDataDevice3D*); void StartDolly3D(vtkEventDataDevice3D*); void EndDolly3D(vtkEventDataDevice3D*); + void StartElevation3D(vtkEventDataDevice3D*); + void EndElevation3D(vtkEventDataDevice3D*); ///@} ///@{ @@ -97,6 +100,7 @@ public: // TODO void Move3D(vtkEventDataDevice3D*); + void Elevation3D(vtkEventDataDevice3D*); ///@{ /** @@ -140,6 +144,21 @@ public: vtkBooleanMacro(GrabWithRay, bool); ///@} + enum MovementStyle + { + FLY_STYLE, + GROUNDED_STYLE + }; + + ///@{ + /** + * Specify the movement style between 'Flying" and "Grounded". + * Default is Flying. + */ + vtkSetMacro(Style, MovementStyle); + vtkGetMacro(Style, MovementStyle); + ///@} + /** * Return interaction state for the specified device (dolly, pick, none, etc...). */ @@ -253,6 +272,9 @@ protected: // Store headset world orientation double HeadsetDir[3] = { 0, 0, 0 }; + // Store movement style + MovementStyle Style = FLY_STYLE; + private: vtkVRInteractorStyle(const vtkVRInteractorStyle&) = delete; void operator=(const vtkVRInteractorStyle&) = delete; -- GitLab From 6026ec696df7f75eb6927ded7a8ed2a95dd3e64c Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Wed, 2 Mar 2022 10:25:53 -0500 Subject: [PATCH 0307/1015] Use data even if IOLAS is not active. --- IO/PDAL/Testing/CMakeLists.txt | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/IO/PDAL/Testing/CMakeLists.txt b/IO/PDAL/Testing/CMakeLists.txt index 35f9732a938a..ca8bd6311db4 100644 --- a/IO/PDAL/Testing/CMakeLists.txt +++ b/IO/PDAL/Testing/CMakeLists.txt @@ -1 +1,5 @@ +vtk_module_test_data( + Data/test_1.las + Data/test_2.las) + add_subdirectory(Cxx) -- GitLab From c04a5904392fa9f2debddc26c0ecdcaff2e43a85 Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Wed, 2 Mar 2022 10:31:57 -0500 Subject: [PATCH 0308/1015] Upgrade Cesium version so that maps work. --- IO/Cesium3DTiles/berlin-3dtiles.html | 6 +++--- IO/Cesium3DTiles/jacksonville-3dtiles.html | 6 +++--- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/IO/Cesium3DTiles/berlin-3dtiles.html b/IO/Cesium3DTiles/berlin-3dtiles.html index 84f230cb0b8e..c9f7619c6d65 100644 --- a/IO/Cesium3DTiles/berlin-3dtiles.html +++ b/IO/Cesium3DTiles/berlin-3dtiles.html @@ -2,8 +2,8 @@ - - + +
@@ -11,7 +11,7 @@ var viewer = new Cesium.Viewer("cesiumContainer"); var scene = new Cesium.Cesium3DTileset({ url : "http://localhost:8003/tilesets/berlin-3d-tiles/tileset.json", - debugShowBoundingVolume: true, + // debugShowBoundingVolume: true, debugColorizeTiles: true, // debugShowGeometricError: true }) diff --git a/IO/Cesium3DTiles/jacksonville-3dtiles.html b/IO/Cesium3DTiles/jacksonville-3dtiles.html index 18f6f0a12615..ec46d59851a6 100644 --- a/IO/Cesium3DTiles/jacksonville-3dtiles.html +++ b/IO/Cesium3DTiles/jacksonville-3dtiles.html @@ -2,8 +2,8 @@ - - + +
@@ -11,7 +11,7 @@ var viewer = new Cesium.Viewer("cesiumContainer"); var scene = new Cesium.Cesium3DTileset({ url : "http://localhost:8003/tilesets/jacksonville-3d-tiles/tileset.json", - debugShowBoundingVolume: true, + // debugShowBoundingVolume: true, // debugShowGeometricError: true, // debugShowRenderingStatistics: true, }) -- GitLab From de0547ccab786d3315d95829cdc024983aae88f5 Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Wed, 2 Mar 2022 10:32:39 -0500 Subject: [PATCH 0309/1015] Work on adding point clouds. --- IO/Cesium3DTiles/TreeInformation.cxx | 43 +++++++--- IO/Cesium3DTiles/TreeInformation.h | 33 ++++++-- IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx | 90 ++++++++++++++------- IO/Cesium3DTiles/vtkCesium3DTilesWriter.h | 15 ++-- 4 files changed, 130 insertions(+), 51 deletions(-) diff --git a/IO/Cesium3DTiles/TreeInformation.cxx b/IO/Cesium3DTiles/TreeInformation.cxx index e5730cc0abd5..d925ca0b65ee 100644 --- a/IO/Cesium3DTiles/TreeInformation.cxx +++ b/IO/Cesium3DTiles/TreeInformation.cxx @@ -47,7 +47,7 @@ namespace * which stores all buildings. */ std::array ComputeTightBoudingBox( - const std::vector>& buildings, vtkIdList* tileBuildings) + const std::vector>* buildings, vtkIdList* tileBuildings) { std::array wholeBB = { std::numeric_limits::max(), std::numeric_limits::lowest(), std::numeric_limits::max(), @@ -56,7 +56,7 @@ std::array ComputeTightBoudingBox( for (int i = 0; i < tileBuildings->GetNumberOfIds(); ++i) { double bb[6]; - buildings[tileBuildings->GetId(i)]->GetBounds(bb); + (*buildings)[tileBuildings->GetId(i)]->GetBounds(bb); wholeBB = TreeInformation::ExpandBounds(&wholeBB[0], bb); } return wholeBB; @@ -120,11 +120,10 @@ std::array ContentTypeExtension = { ".b3dm", ".glb", ".gltf" }; //------------------------------------------------------------------------------ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNodes, - const std::vector>& buildings, const std::string& output, + const std::vector>* buildings, const std::string& output, const std::string& texturePath, bool saveTextures, int contentType, const char* crs) - : - - Root(root) + : Format(BUILDINGS) + , Root(root) , Buildings(buildings) , OutputDir(output) , TexturePath(texturePath) @@ -146,6 +145,28 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod std::fill(this->VolumeError.begin(), this->VolumeError.end(), 0); } +//------------------------------------------------------------------------------ +TreeInformation::TreeInformation( + vtkIncrementalOctreeNode* root, int numberOfNodes, const std::string& output, const char* crs) + : Format(POINTS) + , Root(root) + , OutputDir(output) + , CRS(crs) + , NodeBounds(numberOfNodes) + , EmptyNode(numberOfNodes) + , GeometricError(numberOfNodes) + , VolumeError(numberOfNodes) +{ + std::array a = { std::numeric_limits::max(), + std::numeric_limits::lowest(), std::numeric_limits::max(), + std::numeric_limits::lowest(), std::numeric_limits::max(), + std::numeric_limits::lowest() }; + std::fill(this->NodeBounds.begin(), this->NodeBounds.end(), a); + std::fill(this->EmptyNode.begin(), this->EmptyNode.end(), true); + std::fill(this->GeometricError.begin(), this->GeometricError.end(), 0); + std::fill(this->VolumeError.begin(), this->VolumeError.end(), 0); +} + //------------------------------------------------------------------------------ void TreeInformation::PrintNode(vtkIncrementalOctreeNode* node) { @@ -220,7 +241,7 @@ void TreeInformation::SaveTile(vtkIncrementalOctreeNode* node, void* aux) for (int i = 0; i < pointIds->GetNumberOfIds(); ++i) { int buildingId = pointIds->GetId(i); - vtkCompositeDataSet* building = this->Buildings[buildingId]; + vtkCompositeDataSet* building = (*this->Buildings)[buildingId]; auto it = vtk::TakeSmartPointer(building->NewIterator()); // for each poly data in the building for (it->InitTraversal(); !it->IsDoneWithTraversal(); it->GoToNextItem()) @@ -239,7 +260,7 @@ void TreeInformation::SaveTile(vtkIncrementalOctreeNode* node, void* aux) { int buildingId = pointIds->GetId(i); // add all buildings to the tile - tile->SetBlock(i, this->Buildings[buildingId]); + tile->SetBlock(i, (*this->Buildings)[buildingId]); // ostr << buildingId << " "; } } @@ -272,7 +293,7 @@ double TreeInformation::ComputeTilesetGeometricError() for (int i = 0; i < childBuildings->GetNumberOfIds(); ++i) { double bb[6]; - this->Buildings[childBuildings->GetId(i)]->GetBounds(bb); + (*this->Buildings)[childBuildings->GetId(i)]->GetBounds(bb); double volume = (bb[1] - bb[0]) * (bb[3] - bb[2]) * (bb[5] - bb[4]); tilesetVolumeError += volume; } @@ -304,7 +325,7 @@ void TreeInformation::Compute(vtkIncrementalOctreeNode* node, void*) for (vtkIdType j = 0; j < childBuildings->GetNumberOfIds(); ++j) { double bb[6]; - this->Buildings[childBuildings->GetId(j)]->GetBounds(bb); + (*this->Buildings)[childBuildings->GetId(j)]->GetBounds(bb); double volume = (bb[1] - bb[0]) * (bb[3] - bb[2]) * (bb[5] - bb[4]); this->VolumeError[node->GetID()] += volume; } @@ -435,7 +456,7 @@ json TreeInformation::GenerateTileJson(vtkIncrementalOctreeNode* node) for (int i = 0; i < pointIds->GetNumberOfIds(); ++i) { int buildingId = pointIds->GetId(i); - vtkSmartPointer building = this->Buildings[buildingId]; + vtkSmartPointer building = (*this->Buildings)[buildingId]; auto it = vtk::TakeSmartPointer(building->NewIterator()); // for each poly data in the building for (it->InitTraversal(); !it->IsDoneWithTraversal(); it->GoToNextItem()) diff --git a/IO/Cesium3DTiles/TreeInformation.h b/IO/Cesium3DTiles/TreeInformation.h index 741d09657e2b..599f80983321 100644 --- a/IO/Cesium3DTiles/TreeInformation.h +++ b/IO/Cesium3DTiles/TreeInformation.h @@ -43,9 +43,17 @@ class TreeInformation { public: TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNodes, - const std::vector>& buildings, + const std::vector>* buildings, const std::string& outputDir, const std::string& texturePath, bool saveTextures, int contentType, const char* crs); + TreeInformation( + vtkIncrementalOctreeNode* root, int numberOfNodes, const std::string& output, const char* crs); + + enum Format + { + BUILDINGS, + POINTS + }; void PrintNode(vtkIncrementalOctreeNode* node); @@ -97,21 +105,32 @@ protected: double ComputeTilesetGeometricError(); private: + int Format; vtkIncrementalOctreeNode* Root; - // buildings indexed by building ID - const std::vector>& Buildings; + + /** + * buildings indexed by building ID + */ + const std::vector>* Buildings; std::string OutputDir; std::string TexturePath; bool SaveTextures; int ContentType; + const char* CRS; - // tight bounds indexed by tile ID + /** + * tight bounds indexed by tile ID + */ std::vector> NodeBounds; std::vector EmptyNode; - // geometric error = pow(VolumeError, 1/3) + /** + * geometric error = pow(VolumeError, 1/3) + */ std::vector GeometricError; - // volume difference between rendering this node and rendering the most detailed model. - // indexed by node ID + /** + * volume difference between rendering this node and rendering the most detailed model. + * indexed by node ID + */ std::vector VolumeError; nlohmann::json RootJson; }; diff --git a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx index b0f5bba2905b..0d5fc75fc46f 100644 --- a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx +++ b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx @@ -79,12 +79,22 @@ vtkSmartPointer BuildOctree( return octree; } +vtkSmartPointer BuildOctree( + vtkPointSet* pointSet, int pointsPerTile) +{ + vtkNew octree; + octree->SetMaxPointsPerLeaf(pointsPerTile); + octree->SetDataSet(pointSet); + octree->BuildLocator(); + return octree; +} + //------------------------------------------------------------------------------ -std::array TranslateBuildings(vtkMultiBlockDataSet* root, const double* fileOffset, - std::vector>& buildings) +std::array TranslateBuildings(vtkMultiBlockDataSet* rootBuildings, + const double* fileOffset, std::vector>& buildings) { std::array wholeBB; - root->GetBounds(&wholeBB[0]); + rootBuildings->GetBounds(&wholeBB[0]); // translate the buildings so that the minimum wholeBB is at 0,0,0 vtkNew f; @@ -92,7 +102,7 @@ std::array TranslateBuildings(vtkMultiBlockDataSet* root, const doubl t->Identity(); t->Translate(fileOffset); f->SetTransform(t); - f->SetInputData(root); + f->SetInputData(rootBuildings); f->Update(); vtkMultiBlockDataSet* tr = vtkMultiBlockDataSet::SafeDownCast(f->GetOutputDataObject(0)); tr->GetBounds(&wholeBB[0]); @@ -123,6 +133,7 @@ std::array TranslateBuildings(vtkMultiBlockDataSet* root, const doubl //------------------------------------------------------------------------------ vtkCesium3DTilesWriter::vtkCesium3DTilesWriter() { + this->SetNumberOfInputPorts(2); this->DirectoryName = nullptr; this->TexturePath = nullptr; std::fill(this->Offset, this->Offset + 3, 0); @@ -155,6 +166,12 @@ int vtkCesium3DTilesWriter::FillInputPortInformation(int port, vtkInformation* i if (port == 0) { info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkMultiBlockDataSet"); + info->Set(vtkAlgorithm::INPUT_IS_OPTIONAL(), 1); + } + else if (port == 1) + { + info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPointSet"); + info->Set(vtkAlgorithm::INPUT_IS_OPTIONAL(), 1); } return 1; } @@ -163,34 +180,51 @@ int vtkCesium3DTilesWriter::FillInputPortInformation(int port, vtkInformation* i void vtkCesium3DTilesWriter::WriteData() { { - auto root = vtkMultiBlockDataSet::SafeDownCast(this->GetInput()); - std::vector> buildings; - - vtkLog(INFO, "Translate buildings..."); - auto wholeBB = TranslateBuildings(root, this->Offset, buildings); - if (buildings.empty()) + auto rootBuildings = vtkMultiBlockDataSet::SafeDownCast(this->GetInput(0)); + auto rootPointCloud = vtkPointSet::SafeDownCast(this->GetInput(1)); + if (rootBuildings) { - vtkLog(ERROR, - "No buildings read from the input file. " - "Maybe buildings are on a different LOD. Try changing --lod parameter."); - return; + std::vector> buildings; + vtkLog(INFO, "Translate buildings..."); + auto wholeBB = TranslateBuildings(rootBuildings, this->Offset, buildings); + if (buildings.empty()) + { + vtkLog(ERROR, + "No buildings read from the input file. " + "Maybe buildings are on a different LOD. Try changing --lod parameter."); + return; + } + vtkLog(INFO, "Processing " << buildings.size() << " buildings..."); + vtkDirectory::MakeDirectory(this->DirectoryName); + + vtkSmartPointer octree = + BuildOctree(buildings, wholeBB, this->NumberOfBuildingsPerTile); + TreeInformation treeInformation(octree->GetRoot(), octree->GetNumberOfNodes(), &buildings, + this->DirectoryName, this->TexturePath, this->SaveTextures, this->ContentType, this->CRS); + treeInformation.Compute(); + vtkLog(INFO, "Generating tileset.json for " << octree->GetNumberOfNodes() << " nodes..."); + treeInformation.SaveTileset(std::string(this->DirectoryName) + "/tileset.json"); + if (this->SaveTiles) + { + treeInformation.SaveTiles(this->MergeTilePolyData); + } + vtkLog(INFO, "Deleting objects ..."); } - vtkLog(INFO, "Processing " << buildings.size() << " buildings..."); - vtkDirectory::MakeDirectory(this->DirectoryName); - - vtkSmartPointer octree = - BuildOctree(buildings, wholeBB, this->NumberOfBuildingsPerTile); - TreeInformation treeInformation(octree->GetRoot(), octree->GetNumberOfNodes(), buildings, - this->DirectoryName, this->TexturePath, this->SaveTextures, this->ContentType, this->CRS); - treeInformation.Compute(); - vtkLog(INFO, "Generating tileset.json for " << octree->GetNumberOfNodes() << " nodes..."); - treeInformation.SaveTileset(std::string(this->DirectoryName) + "/tileset.json"); - - if (this->SaveTiles) + else if (rootPointCloud) { - treeInformation.SaveTiles(this->MergeTilePolyData); + vtkSmartPointer octree = + BuildOctree(rootPointCloud, this->NumberOfBuildingsPerTile); + TreeInformation treeInformation( + octree->GetRoot(), octree->GetNumberOfNodes(), this->DirectoryName, this->CRS); + treeInformation.Compute(); + vtkLog(INFO, "Generating tileset.json for " << octree->GetNumberOfNodes() << " nodes..."); + treeInformation.SaveTileset(std::string(this->DirectoryName) + "/tileset.json"); + if (this->SaveTiles) + { + treeInformation.SaveTiles(this->MergeTilePolyData); + } + vtkLog(INFO, "Deleting objects ..."); } - vtkLog(INFO, "Deleting objects ..."); } vtkLog(INFO, "Done."); } diff --git a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.h b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.h index 2da7db7f878f..676b6c99955c 100644 --- a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.h +++ b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.h @@ -14,8 +14,14 @@ =========================================================================*/ /** * @class vtkCesium3DTilesWriter - * @brief Converts a vtkMultiBlockDataSet (as created by vtkCityGMLReader) into - * 3D Tiles format. + * @brief Writes a dataset into 3D Tiles format. + * + * + * Valid inputs include the vtkMultiBlockDataSet (as created by + * vtkCityGMLReader) storing 3D buidlings or vtkPointSet + * storing a point cloud. Note that currently the writer + * cannot handle mixed inputs (buildings and point clouds). + * */ #ifndef vtkCesium3DTilesWriter_h @@ -109,16 +115,15 @@ public: */ vtkSetMacro(ContentType, int); vtkGetMacro(ContentType, int); - vtkBooleanMacro(ContentType, int); //@ //@{ /** - * Maximum number of buildings per tile. Default is 100. + * Maximum number of buildings per tile in case of buildings input or + * the number of points per tile in case of point cloud input. Default is 100. */ vtkSetMacro(NumberOfBuildingsPerTile, int); vtkGetMacro(NumberOfBuildingsPerTile, int); - vtkBooleanMacro(NumberOfBuildingsPerTile, int); //@ ///@{ -- GitLab From bc61afcbf19800708a59b942a8f822fc61ea9b28 Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Thu, 17 Mar 2022 16:59:24 -0400 Subject: [PATCH 0310/1015] Working on adding point clouds. --- .../Testing/Cxx/TestCesium3DTilesWriter.cxx | 146 +++++++++++------- IO/Cesium3DTiles/TreeInformation.cxx | 77 +++++++-- IO/Cesium3DTiles/TreeInformation.h | 26 ++-- IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx | 33 ++-- IO/Cesium3DTiles/vtkCesium3DTilesWriter.h | 32 +++- 5 files changed, 215 insertions(+), 99 deletions(-) diff --git a/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx b/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx index 718cb410b910..e58e333d7a0f 100644 --- a/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx +++ b/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx @@ -13,27 +13,28 @@ =========================================================================*/ +#include "vtkAppendPolyData.h" +#include "vtkCellData.h" #include "vtkCesium3DTilesWriter.h" +#include "vtkCityGMLReader.h" +#include "vtkCompositeDataIterator.h" +#include "vtkDataObject.h" +#include "vtkDirectory.h" +#include "vtkDoubleArray.h" +#include "vtkGLTFReader.h" +#include "vtkIncrementalOctreeNode.h" +#include "vtkIncrementalOctreePointLocator.h" +#include "vtkLogger.h" +#include "vtkMathUtilities.h" +#include "vtkMultiBlockDataSet.h" +#include "vtkNew.h" +#include "vtkOBJReader.h" +#include "vtkPoints.h" +#include "vtkSmartPointer.h" +#include "vtkStringArray.h" #include "vtkTesting.h" -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include +#include "vtksys/FStream.hxx" +#include "vtksys/SystemTools.hxx" #include #include @@ -99,7 +100,7 @@ std::string GetOBJTextureFileName(const std::string& file) return fileNoExt + ".png"; } -vtkSmartPointer ReadOBJFiles(int numberOfBuildings, int vtkNotUsed(lod), +vtkSmartPointer ReadOBJBuildings(int numberOfBuildings, int vtkNotUsed(lod), const std::vector& files, std::array& fileOffset) { auto root = vtkSmartPointer::New(); @@ -122,7 +123,27 @@ vtkSmartPointer ReadOBJFiles(int numberOfBuildings, int vt return root; } -vtkSmartPointer ReadCityGMLFiles(int numberOfBuildings, int lod, +vtkSmartPointer ReadOBJMesh(int numberOfBuildings, int vtkNotUsed(lod), + const std::vector& files, std::array& fileOffset) +{ + vtkNew append; + for (size_t i = 0; i < files.size() && i < static_cast(numberOfBuildings); ++i) + { + vtkNew reader; + reader->SetFileName(files[i].c_str()); + reader->Update(); + if (i == 0) + { + fileOffset = ReadOBJOffset(reader->GetComment()); + } + auto polyData = reader->GetOutput(); + append->AddInputDataObject(polyData); + } + append->Update(); + return append->GetOutput(); +} + +vtkSmartPointer ReadCityGMLBuildings(int numberOfBuildings, int lod, const std::vector& files, std::array& fileOffset) { if (files.size() > 1) @@ -147,8 +168,8 @@ vtkSmartPointer ReadCityGMLFiles(int numberOfBuildings, in //------------------------------------------------------------------------------ using ReaderType = vtkSmartPointer (*)(int numberOfBuildings, int lod, const std::vector& files, std::array& fileOffset); -std::map READER = { { ".obj", ReadOBJFiles }, - { ".gml", ReadCityGMLFiles } }; +std::map READER = { { ".obj", ReadOBJBuildings }, + { ".gml", ReadCityGMLBuildings } }; //------------------------------------------------------------------------------ bool isSupported(const char* file) @@ -196,42 +217,46 @@ std::vector getFiles(const std::vector& input) } //------------------------------------------------------------------------------ -struct Input -{ - Input() - { - this->Data = nullptr; - std::fill(Offset.begin(), Offset.end(), 0); - } - vtkSmartPointer Data; - std::array Offset; -}; -Input tiler(const std::vector& input, const std::string& output, int numberOfBuildings, - int buildingsPerTile, int lod, const std::vector& inputOffset, bool saveTiles, - bool saveTextures, std::string crs, const int utmZone, char utmHemisphere) +bool tiler(const std::vector& input, int inputType, const std::string& output, + int numberOfBuildings, int buildingsPerTile, int lod, const std::vector& inputOffset, + bool saveTiles, bool saveTextures, std::string crs, const int utmZone, char utmHemisphere) { - Input ret; + vtkSmartPointer mbData; + vtkSmartPointer polyData; std::vector files = getFiles(input); if (files.empty()) { vtkLog(ERROR, "No valid input files"); - return ret; + return false; } vtkLog(INFO, "Parsing " << files.size() << " files...") std::array fileOffset = { { 0, 0, 0 } }; - ret.Data = - READER[SystemTools::GetFilenameExtension(files[0])](numberOfBuildings, lod, files, fileOffset); + if (inputType == vtkCesium3DTilesWriter::Buildings) + { + mbData = READER[SystemTools::GetFilenameExtension(files[0])]( + numberOfBuildings, lod, files, fileOffset); + } + else if (inputType == vtkCesium3DTilesWriter::Points) + { + polyData = ReadOBJMesh(numberOfBuildings, lod, files, fileOffset); + } std::transform(fileOffset.begin(), fileOffset.end(), inputOffset.begin(), fileOffset.begin(), std::plus()); - ret.Offset = fileOffset; - std::string texturePath = SystemTools::GetFilenamePath(files[0]); vtkNew writer; - writer->SetInputDataObject(ret.Data); + if (inputType == vtkCesium3DTilesWriter::Buildings) + { + writer->SetInputDataObject(mbData); + } + else + { + writer->SetInputDataObject(polyData); + } + writer->SetInputType(inputType); writer->SetDirectoryName(output.c_str()); writer->SetTexturePath(texturePath.c_str()); writer->SetOffset(&fileOffset[0]); @@ -246,7 +271,7 @@ Input tiler(const std::vector& input, const std::string& output, in } writer->SetCRS(crs.c_str()); writer->Write(); - return ret; + return true; } bool TrianglesDiffer(std::array, 3>& in, std::string gltfFileName) @@ -376,11 +401,12 @@ int TestCesium3DTilesWriter(int argc, char* argv[]) std::string dataRoot = testHelper->GetDataRoot(); std::string tempDirectory = testHelper->GetTempDirectory(); - auto ret = - tiler(std::vector{ { dataRoot + "/Data/3DTiles/jacksonville-triangle.obj" } }, - tempDirectory + "/jacksonville-3dtiles", 1, 1, 2, std::vector{ { 0, 0, 0 } }, - true /*saveTiles*/, false /*saveTextures*/, "", 17, 'N'); - if (!ret.Data) + // Test jacksonville triangle + std::cout << "Test jacksonville buildings" << std::endl; + if (!tiler(std::vector{ { dataRoot + "/Data/3DTiles/jacksonville-triangle.obj" } }, + vtkCesium3DTilesWriter::Buildings, tempDirectory + "/jacksonville-3dtiles", 1, 1, 2, + std::vector{ { 0, 0, 0 } }, true /*saveTiles*/, false /*saveTextures*/, "", 17, + 'N')) { return EXIT_FAILURE; } @@ -416,10 +442,13 @@ int TestCesium3DTilesWriter(int argc, char* argv[]) << testfname << std::endl; return EXIT_FAILURE; } - ret = tiler(std::vector{ { dataRoot + "/Data/3DTiles/berlin-triangle.gml" } }, - tempDirectory + "/berlin-3dtiles", 1, 1, 2, std::vector{ { 0, 0, 0 } }, - true /*saveTiles*/, false /*saveTextures*/, "", 33, 'N'); - if (!ret.Data) + + // Test berlin-triangle + std::cout << "Test berlin buildings (citygml)" << std::endl; + if (!tiler(std::vector{ { dataRoot + "/Data/3DTiles/berlin-triangle.gml" } }, + vtkCesium3DTilesWriter::Buildings, tempDirectory + "/berlin-3dtiles", 1, 1, 2, + std::vector{ { 0, 0, 0 } }, true /*saveTiles*/, false /*saveTextures*/, "", 33, + 'N')) { return EXIT_FAILURE; } @@ -455,5 +484,16 @@ int TestCesium3DTilesWriter(int argc, char* argv[]) << testfname << std::endl; return EXIT_FAILURE; } + + // // Test jacksonville-points + // std::cout << "Test jacksonville points" << std::endl; + // if (! tiler(std::vector{ { dataRoot + "/Data/3DTiles/jacksonville-triangle.obj" } + // }, vtkCesium3DTilesWriter::Points, + // tempDirectory + "/jacksonville-3dtiles-points", 3, 3, 2, std::vector{ { 0, + // 0, 0 } }, true /*saveTiles*/, false /*saveTextures*/, "", 33, 'N')) + // { + // return EXIT_FAILURE; + // } + return EXIT_SUCCESS; } diff --git a/IO/Cesium3DTiles/TreeInformation.cxx b/IO/Cesium3DTiles/TreeInformation.cxx index d925ca0b65ee..5c8fbf4f0e1c 100644 --- a/IO/Cesium3DTiles/TreeInformation.cxx +++ b/IO/Cesium3DTiles/TreeInformation.cxx @@ -46,7 +46,7 @@ namespace * 'list', which stores all buildings in a tile as indexes into 'buildings' vector * which stores all buildings. */ -std::array ComputeTightBoudingBox( +std::array ComputeTightBBBuildings( const std::vector>* buildings, vtkIdList* tileBuildings) { std::array wholeBB = { std::numeric_limits::max(), @@ -62,6 +62,24 @@ std::array ComputeTightBoudingBox( return wholeBB; } +std::array ComputeTightBBPoints( + const vtkSmartPointer points, vtkIdList* tileBuildings) +{ + std::array wholeBB = { std::numeric_limits::max(), + std::numeric_limits::lowest(), std::numeric_limits::max(), + std::numeric_limits::lowest(), std::numeric_limits::max(), + std::numeric_limits::lowest() }; + for (int i = 0; i < tileBuildings->GetNumberOfIds(); ++i) + { + std::array bb; + double point[3]; + points->GetPoint(tileBuildings->GetId(i), point); + bb = { { point[0], point[0], point[1], point[1], point[2], point[2] } }; + wholeBB = TreeInformation::ExpandBounds(&wholeBB[0], &bb[0]); + } + return wholeBB; +} + //------------------------------------------------------------------------------ /** * bb: xmin, xmax, ymin, ymax, zmin, zmax @@ -115,20 +133,21 @@ std::array ToLonLatRadiansHeight(const char* crs, const std::array ContentTypeExtension = { ".b3dm", ".glb", ".gltf" }; +std::array BuildingContentTypeExtension = { ".b3dm", ".glb", ".gltf" }; } //------------------------------------------------------------------------------ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNodes, const std::vector>* buildings, const std::string& output, const std::string& texturePath, bool saveTextures, int contentType, const char* crs) - : Format(BUILDINGS) + : InputType(vtkCesium3DTilesWriter::Buildings) , Root(root) , Buildings(buildings) + , Points(nullptr) , OutputDir(output) , TexturePath(texturePath) , SaveTextures(saveTextures) - , ContentType(contentType) + , BuildingContentType(contentType) , CRS(crs) , NodeBounds(numberOfNodes) , EmptyNode(numberOfNodes) @@ -146,11 +165,15 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod } //------------------------------------------------------------------------------ -TreeInformation::TreeInformation( - vtkIncrementalOctreeNode* root, int numberOfNodes, const std::string& output, const char* crs) - : Format(POINTS) +TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNodes, + vtkPointSet* points, const std::string& output, const char* crs) + : InputType(vtkCesium3DTilesWriter::Points) , Root(root) + , Buildings(nullptr) + , Points(points) , OutputDir(output) + , SaveTextures(false) + , BuildingContentType(vtkCesium3DTilesWriter::B3DM) , CRS(crs) , NodeBounds(numberOfNodes) , EmptyNode(numberOfNodes) @@ -204,9 +227,15 @@ void TreeInformation::Compute() } //------------------------------------------------------------------------------ -void TreeInformation::SaveTiles(bool mergeTilePolyData) +void TreeInformation::SaveTilesGLTF(bool mergeTilePolyData) { - this->PostOrderTraversal(&TreeInformation::SaveTile, this->Root, &mergeTilePolyData); + this->PostOrderTraversal(&TreeInformation::SaveTileGLTF, this->Root, &mergeTilePolyData); +} + +//------------------------------------------------------------------------------ +void TreeInformation::SaveTilesPnts() +{ + this->PostOrderTraversal(&TreeInformation::SaveTilePnts, this->Root, nullptr); } //------------------------------------------------------------------------------ @@ -225,7 +254,7 @@ void TreeInformation::PostOrderTraversal( } //------------------------------------------------------------------------------ -void TreeInformation::SaveTile(vtkIncrementalOctreeNode* node, void* aux) +void TreeInformation::SaveTileGLTF(vtkIncrementalOctreeNode* node, void* aux) { bool mergeTilePolyData = *static_cast(aux); if (node->IsLeaf() && !this->EmptyNode[node->GetID()]) @@ -281,6 +310,9 @@ void TreeInformation::SaveTile(vtkIncrementalOctreeNode* node, void* aux) } } +//------------------------------------------------------------------------------ +void TreeInformation::SaveTilePnts(vtkIncrementalOctreeNode* node, void* auxData) {} + //------------------------------------------------------------------------------ double TreeInformation::ComputeTilesetGeometricError() { @@ -301,6 +333,24 @@ double TreeInformation::ComputeTilesetGeometricError() return std::pow(tilesetVolumeError, 1.0 / 3); } +//------------------------------------------------------------------------------ +std::array TreeInformation::ComputeTightBB(vtkIdList* tileBuildings) +{ + + std::array d; + d.fill(0); + switch (this->InputType) + { + case vtkCesium3DTilesWriter::Buildings: + return ComputeTightBBBuildings(this->Buildings, tileBuildings); + case vtkCesium3DTilesWriter::Points: + return ComputeTightBBPoints(this->Points, tileBuildings); + default: + vtkLog(ERROR, "Invalid InputType " << this->InputType); + } + return d; +} + //------------------------------------------------------------------------------ void TreeInformation::Compute(vtkIncrementalOctreeNode* node, void*) { @@ -308,7 +358,7 @@ void TreeInformation::Compute(vtkIncrementalOctreeNode* node, void*) // compute the bounding box for the current node if (nodeBuildings) { - this->NodeBounds[node->GetID()] = ComputeTightBoudingBox(this->Buildings, nodeBuildings); + this->NodeBounds[node->GetID()] = this->ComputeTightBB(nodeBuildings); this->EmptyNode[node->GetID()] = false; } // propagate the node bounding box from the children. @@ -352,7 +402,7 @@ void TreeInformation::SaveTileset(vtkIncrementalOctreeNode* root, const std::str { json v; this->RootJson["asset"]["version"] = "1.0"; - if (this->ContentType != vtkCesium3DTilesWriter::B3DM) + if (this->BuildingContentType != vtkCesium3DTilesWriter::B3DM) { std::string content_gltf = "3DTILES_content_gltf"; std::string mesh_gpu_instancing = "EXT_mesh_gpu_instancing"; @@ -495,7 +545,8 @@ json TreeInformation::GenerateTileJson(vtkIncrementalOctreeNode* node) proj_destroy(P); ostr.str(""); - ostr << node->GetID() << "/" << node->GetID() << ContentTypeExtension[this->ContentType]; + ostr << node->GetID() << "/" << node->GetID() + << BuildingContentTypeExtension[this->BuildingContentType]; tree["content"]["uri"] = ostr.str(); } } diff --git a/IO/Cesium3DTiles/TreeInformation.h b/IO/Cesium3DTiles/TreeInformation.h index 599f80983321..88e1dccfe2a6 100644 --- a/IO/Cesium3DTiles/TreeInformation.h +++ b/IO/Cesium3DTiles/TreeInformation.h @@ -33,8 +33,10 @@ class vtkActor; class vtkCompositeDataSet; +class vtkIdList; class vtkIntArray; class vtkPolyData; +class vtkPointSet; class vtkRenderWindow; class vtkRenderWindowInteractor; class vtkIncrementalOctreeNode; @@ -46,14 +48,8 @@ public: const std::vector>* buildings, const std::string& outputDir, const std::string& texturePath, bool saveTextures, int contentType, const char* crs); - TreeInformation( - vtkIncrementalOctreeNode* root, int numberOfNodes, const std::string& output, const char* crs); - - enum Format - { - BUILDINGS, - POINTS - }; + TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNodes, vtkPointSet* points, + const std::string& output, const char* crs); void PrintNode(vtkIncrementalOctreeNode* node); @@ -81,7 +77,8 @@ public: * and the geometric error. */ void Compute(); - void SaveTiles(bool mergeTilePolyData); + void SaveTilesGLTF(bool mergeTilePolyData); + void SaveTilesPnts(); void SaveTileset(const std::string& output); static void PrintBounds(const char* name, const double* bounds); static void PrintBounds(const std::string& name, const double* bounds) @@ -101,21 +98,24 @@ protected: * and the geometric error. */ void Compute(vtkIncrementalOctreeNode* node, void* aux); - void SaveTile(vtkIncrementalOctreeNode* node, void* aux); + void SaveTileGLTF(vtkIncrementalOctreeNode* node, void* auxData); + void SaveTilePnts(vtkIncrementalOctreeNode* node, void* auxData); double ComputeTilesetGeometricError(); + std::array ComputeTightBB(vtkIdList* tileBuildings); private: - int Format; + int InputType; vtkIncrementalOctreeNode* Root; - /** * buildings indexed by building ID */ const std::vector>* Buildings; + vtkPointSet* Points; + std::string OutputDir; std::string TexturePath; bool SaveTextures; - int ContentType; + int BuildingContentType; const char* CRS; /** diff --git a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx index 0d5fc75fc46f..d5d520950f11 100644 --- a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx +++ b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx @@ -133,14 +133,15 @@ std::array TranslateBuildings(vtkMultiBlockDataSet* rootBuildings, //------------------------------------------------------------------------------ vtkCesium3DTilesWriter::vtkCesium3DTilesWriter() { - this->SetNumberOfInputPorts(2); + this->SetNumberOfInputPorts(1); this->DirectoryName = nullptr; this->TexturePath = nullptr; std::fill(this->Offset, this->Offset + 3, 0); this->SaveTextures = true; this->SaveTiles = true; this->MergeTilePolyData = false; - this->ContentType = B3DM; + this->InputType = Buildings; + this->BuildingContentType = B3DM; this->NumberOfBuildingsPerTile = 100; this->CRS = nullptr; } @@ -163,15 +164,22 @@ void vtkCesium3DTilesWriter::PrintSelf(ostream& os, vtkIndent indent) //------------------------------------------------------------------------------ int vtkCesium3DTilesWriter::FillInputPortInformation(int port, vtkInformation* info) { - if (port == 0) + if (this->InputType == Buildings) { info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkMultiBlockDataSet"); - info->Set(vtkAlgorithm::INPUT_IS_OPTIONAL(), 1); } - else if (port == 1) + else if (this->InputType == Points) { info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPointSet"); - info->Set(vtkAlgorithm::INPUT_IS_OPTIONAL(), 1); + } + else if (this->InputType == Mesh) + { + info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPolyData"); + } + else + { + vtkErrorMacro("Invalid InputType: " << this->InputType); + return 0; } return 1; } @@ -181,7 +189,7 @@ void vtkCesium3DTilesWriter::WriteData() { { auto rootBuildings = vtkMultiBlockDataSet::SafeDownCast(this->GetInput(0)); - auto rootPointCloud = vtkPointSet::SafeDownCast(this->GetInput(1)); + auto rootPointCloud = vtkPointSet::SafeDownCast(this->GetInput(0)); if (rootBuildings) { std::vector> buildings; @@ -200,13 +208,14 @@ void vtkCesium3DTilesWriter::WriteData() vtkSmartPointer octree = BuildOctree(buildings, wholeBB, this->NumberOfBuildingsPerTile); TreeInformation treeInformation(octree->GetRoot(), octree->GetNumberOfNodes(), &buildings, - this->DirectoryName, this->TexturePath, this->SaveTextures, this->ContentType, this->CRS); + this->DirectoryName, this->TexturePath, this->SaveTextures, this->BuildingContentType, + this->CRS); treeInformation.Compute(); vtkLog(INFO, "Generating tileset.json for " << octree->GetNumberOfNodes() << " nodes..."); treeInformation.SaveTileset(std::string(this->DirectoryName) + "/tileset.json"); if (this->SaveTiles) { - treeInformation.SaveTiles(this->MergeTilePolyData); + treeInformation.SaveTilesGLTF(this->MergeTilePolyData); } vtkLog(INFO, "Deleting objects ..."); } @@ -214,14 +223,14 @@ void vtkCesium3DTilesWriter::WriteData() { vtkSmartPointer octree = BuildOctree(rootPointCloud, this->NumberOfBuildingsPerTile); - TreeInformation treeInformation( - octree->GetRoot(), octree->GetNumberOfNodes(), this->DirectoryName, this->CRS); + TreeInformation treeInformation(octree->GetRoot(), octree->GetNumberOfNodes(), rootPointCloud, + this->DirectoryName, this->CRS); treeInformation.Compute(); vtkLog(INFO, "Generating tileset.json for " << octree->GetNumberOfNodes() << " nodes..."); treeInformation.SaveTileset(std::string(this->DirectoryName) + "/tileset.json"); if (this->SaveTiles) { - treeInformation.SaveTiles(this->MergeTilePolyData); + treeInformation.SaveTilesPnts(); } vtkLog(INFO, "Deleting objects ..."); } diff --git a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.h b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.h index 676b6c99955c..c95d6b541066 100644 --- a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.h +++ b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.h @@ -37,7 +37,14 @@ public: void PrintSelf(ostream& os, vtkIndent indent) override; vtkTypeMacro(vtkCesium3DTilesWriter, vtkWriter); - enum ContentType + enum InputType + { + Buildings, + Points, + Mesh + }; + + enum BuildingContentType { B3DM, GLB, @@ -107,14 +114,22 @@ public: //@{ /** - * What is the ContentType used for tiles. Default is B3DM. - * For ContentType GLB and GLTF we use 3DTILES_content_gltf extension. - * For ContentType B3DM and GLB, external programs are needed to convert - * GLTF -> GLB -> B3DM. + * What is the BuildingContentType used for tiles. Default is B3DM. + * For BuildingContentType GLB and GLTF we use 3DTILES_content_gltf extension. + * For BuildingContentType B3DM and GLB, external programs are needed to convert + * GLTF -> GLB -> B3DM. This field is only used for Buildings. + * + */ + vtkSetMacro(BuildingContentType, int); + vtkGetMacro(BuildingContentType, int); + //@ + + //@{ + /** * */ - vtkSetMacro(ContentType, int); - vtkGetMacro(ContentType, int); + vtkSetMacro(InputType, int); + vtkGetMacro(InputType, int); //@ //@{ @@ -150,7 +165,8 @@ protected: char* TexturePath; double Offset[3]; bool SaveTextures; - int ContentType; + int InputType; + int BuildingContentType; bool SaveTiles; bool MergeTilePolyData; int NumberOfBuildingsPerTile; -- GitLab From 74c60185674bc54e4f14d015476dc011a902e266 Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Thu, 17 Mar 2022 17:25:42 -0400 Subject: [PATCH 0311/1015] Remove GeometricError, compute it on the fly instead. --- IO/Cesium3DTiles/TreeInformation.cxx | 9 ++------- IO/Cesium3DTiles/TreeInformation.h | 4 ---- 2 files changed, 2 insertions(+), 11 deletions(-) diff --git a/IO/Cesium3DTiles/TreeInformation.cxx b/IO/Cesium3DTiles/TreeInformation.cxx index 5c8fbf4f0e1c..f6d6d83d10cc 100644 --- a/IO/Cesium3DTiles/TreeInformation.cxx +++ b/IO/Cesium3DTiles/TreeInformation.cxx @@ -151,7 +151,6 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod , CRS(crs) , NodeBounds(numberOfNodes) , EmptyNode(numberOfNodes) - , GeometricError(numberOfNodes) , VolumeError(numberOfNodes) { std::array a = { std::numeric_limits::max(), @@ -160,7 +159,6 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod std::numeric_limits::lowest() }; std::fill(this->NodeBounds.begin(), this->NodeBounds.end(), a); std::fill(this->EmptyNode.begin(), this->EmptyNode.end(), true); - std::fill(this->GeometricError.begin(), this->GeometricError.end(), 0); std::fill(this->VolumeError.begin(), this->VolumeError.end(), 0); } @@ -177,7 +175,6 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod , CRS(crs) , NodeBounds(numberOfNodes) , EmptyNode(numberOfNodes) - , GeometricError(numberOfNodes) , VolumeError(numberOfNodes) { std::array a = { std::numeric_limits::max(), @@ -186,7 +183,6 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod std::numeric_limits::lowest() }; std::fill(this->NodeBounds.begin(), this->NodeBounds.end(), a); std::fill(this->EmptyNode.begin(), this->EmptyNode.end(), true); - std::fill(this->GeometricError.begin(), this->GeometricError.end(), 0); std::fill(this->VolumeError.begin(), this->VolumeError.end(), 0); } @@ -388,7 +384,6 @@ void TreeInformation::Compute(vtkIncrementalOctreeNode* node, void*) } } } - this->GeometricError[node->GetID()] = std::pow(this->VolumeError[node->GetID()], 1.0 / 3); } //------------------------------------------------------------------------------ @@ -445,7 +440,7 @@ json TreeInformation::GenerateTileJson(vtkIncrementalOctreeNode* node) v[i] = lonLatRadiansHeight[i]; } tree["boundingVolume"]["region"] = v; - tree["geometricError"] = this->GeometricError[node->GetID()]; + tree["geometricError"] = std::pow(this->VolumeError[node->GetID()], 1.0 / 3); if (node == this->Root) { tree["refine"] = "REPLACE"; @@ -580,7 +575,7 @@ void TreeInformation::AddGeometricError(vtkPolyData* poly) for (int i = 0; i < indexArray->GetNumberOfTuples(); ++i) { int index = indexArray->GetValue(i); - error->SetValue(i, this->GeometricError[index]); + error->SetValue(i, std::pow(this->VolumeError[index], 1.0 / 3)); } poly->GetCellData()->AddArray(error); } diff --git a/IO/Cesium3DTiles/TreeInformation.h b/IO/Cesium3DTiles/TreeInformation.h index 88e1dccfe2a6..9130731c7ac6 100644 --- a/IO/Cesium3DTiles/TreeInformation.h +++ b/IO/Cesium3DTiles/TreeInformation.h @@ -123,10 +123,6 @@ private: */ std::vector> NodeBounds; std::vector EmptyNode; - /** - * geometric error = pow(VolumeError, 1/3) - */ - std::vector GeometricError; /** * volume difference between rendering this node and rendering the most detailed model. * indexed by node ID -- GitLab From d023144e425bc3106ebc8f8041447b0d7000d3b8 Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Fri, 18 Mar 2022 10:39:47 -0400 Subject: [PATCH 0312/1015] Use GeometricError instead of VolumeError --- IO/Cesium3DTiles/TreeInformation.cxx | 18 +++++++++--------- IO/Cesium3DTiles/TreeInformation.h | 10 ++++++++-- 2 files changed, 17 insertions(+), 11 deletions(-) diff --git a/IO/Cesium3DTiles/TreeInformation.cxx b/IO/Cesium3DTiles/TreeInformation.cxx index f6d6d83d10cc..af6c2b0f2f3d 100644 --- a/IO/Cesium3DTiles/TreeInformation.cxx +++ b/IO/Cesium3DTiles/TreeInformation.cxx @@ -151,7 +151,7 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod , CRS(crs) , NodeBounds(numberOfNodes) , EmptyNode(numberOfNodes) - , VolumeError(numberOfNodes) + , GeometricError(numberOfNodes) { std::array a = { std::numeric_limits::max(), std::numeric_limits::lowest(), std::numeric_limits::max(), @@ -159,7 +159,7 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod std::numeric_limits::lowest() }; std::fill(this->NodeBounds.begin(), this->NodeBounds.end(), a); std::fill(this->EmptyNode.begin(), this->EmptyNode.end(), true); - std::fill(this->VolumeError.begin(), this->VolumeError.end(), 0); + std::fill(this->GeometricError.begin(), this->GeometricError.end(), 0); } //------------------------------------------------------------------------------ @@ -175,7 +175,7 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod , CRS(crs) , NodeBounds(numberOfNodes) , EmptyNode(numberOfNodes) - , VolumeError(numberOfNodes) + , GeometricError(numberOfNodes) { std::array a = { std::numeric_limits::max(), std::numeric_limits::lowest(), std::numeric_limits::max(), @@ -183,7 +183,7 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod std::numeric_limits::lowest() }; std::fill(this->NodeBounds.begin(), this->NodeBounds.end(), a); std::fill(this->EmptyNode.begin(), this->EmptyNode.end(), true); - std::fill(this->VolumeError.begin(), this->VolumeError.end(), 0); + std::fill(this->GeometricError.begin(), this->GeometricError.end(), 0); } //------------------------------------------------------------------------------ @@ -314,7 +314,7 @@ double TreeInformation::ComputeTilesetGeometricError() { double tilesetVolumeError; // buildings in child nodes contribute to the error in the parent - tilesetVolumeError = this->VolumeError[this->Root->GetID()]; + tilesetVolumeError = this->GeometricError[this->Root->GetID()]; vtkIdList* childBuildings = this->Root->GetPointIdSet(); if (childBuildings) { @@ -364,7 +364,7 @@ void TreeInformation::Compute(vtkIncrementalOctreeNode* node, void*) { // buildings in child nodes contribute to the error in the parent vtkIncrementalOctreeNode* child = node->GetChild(i); - this->VolumeError[node->GetID()] += this->VolumeError[child->GetID()]; + this->GeometricError[node->GetID()] += this->GeometricError[child->GetID()]; vtkIdList* childBuildings = child->GetPointIdSet(); if (childBuildings) { @@ -373,7 +373,7 @@ void TreeInformation::Compute(vtkIncrementalOctreeNode* node, void*) double bb[6]; (*this->Buildings)[childBuildings->GetId(j)]->GetBounds(bb); double volume = (bb[1] - bb[0]) * (bb[3] - bb[2]) * (bb[5] - bb[4]); - this->VolumeError[node->GetID()] += volume; + this->GeometricError[node->GetID()] += volume; } } if (!this->EmptyNode[child->GetID()]) @@ -440,7 +440,7 @@ json TreeInformation::GenerateTileJson(vtkIncrementalOctreeNode* node) v[i] = lonLatRadiansHeight[i]; } tree["boundingVolume"]["region"] = v; - tree["geometricError"] = std::pow(this->VolumeError[node->GetID()], 1.0 / 3); + tree["geometricError"] = std::pow(this->GeometricError[node->GetID()], 1.0 / 3); if (node == this->Root) { tree["refine"] = "REPLACE"; @@ -575,7 +575,7 @@ void TreeInformation::AddGeometricError(vtkPolyData* poly) for (int i = 0; i < indexArray->GetNumberOfTuples(); ++i) { int index = indexArray->GetValue(i); - error->SetValue(i, std::pow(this->VolumeError[index], 1.0 / 3)); + error->SetValue(i, std::pow(this->GeometricError[index], 1.0 / 3)); } poly->GetCellData()->AddArray(error); } diff --git a/IO/Cesium3DTiles/TreeInformation.h b/IO/Cesium3DTiles/TreeInformation.h index 9130731c7ac6..729c46fb96ba 100644 --- a/IO/Cesium3DTiles/TreeInformation.h +++ b/IO/Cesium3DTiles/TreeInformation.h @@ -104,12 +104,18 @@ protected: std::array ComputeTightBB(vtkIdList* tileBuildings); private: + /** + * Buildings, Points or Mesh. @see vtkCesium3DTilesWriter::InputType + */ int InputType; vtkIncrementalOctreeNode* Root; /** - * buildings indexed by building ID + * buildings input indexed by building ID */ const std::vector>* Buildings; + /** + * point cloud input + */ vtkPointSet* Points; std::string OutputDir; @@ -127,7 +133,7 @@ private: * volume difference between rendering this node and rendering the most detailed model. * indexed by node ID */ - std::vector VolumeError; + std::vector GeometricError; nlohmann::json RootJson; }; -- GitLab From 8707a19b199924c3baa007ec6b1846b9ad9459c4 Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Sat, 19 Mar 2022 15:31:28 -0400 Subject: [PATCH 0313/1015] Add geometric error computation for point clouds. --- .../Testing/Cxx/TestCesium3DTilesWriter.cxx | 18 +-- IO/Cesium3DTiles/TreeInformation.cxx | 142 +++++++++++++++--- IO/Cesium3DTiles/TreeInformation.h | 15 +- 3 files changed, 146 insertions(+), 29 deletions(-) diff --git a/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx b/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx index e58e333d7a0f..22b6cf41d771 100644 --- a/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx +++ b/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx @@ -485,15 +485,15 @@ int TestCesium3DTilesWriter(int argc, char* argv[]) return EXIT_FAILURE; } - // // Test jacksonville-points - // std::cout << "Test jacksonville points" << std::endl; - // if (! tiler(std::vector{ { dataRoot + "/Data/3DTiles/jacksonville-triangle.obj" } - // }, vtkCesium3DTilesWriter::Points, - // tempDirectory + "/jacksonville-3dtiles-points", 3, 3, 2, std::vector{ { 0, - // 0, 0 } }, true /*saveTiles*/, false /*saveTextures*/, "", 33, 'N')) - // { - // return EXIT_FAILURE; - // } + // Test jacksonville-points + std::cout << "Test jacksonville points" << std::endl; + if (!tiler(std::vector{ { dataRoot + "/Data/3DTiles/jacksonville-triangle.obj" } }, + vtkCesium3DTilesWriter::Points, tempDirectory + "/jacksonville-3dtiles-points", 3, 3, 2, + std::vector{ { 0, 0, 0 } }, true /*saveTiles*/, false /*saveTextures*/, "", 33, + 'N')) + { + return EXIT_FAILURE; + } return EXIT_SUCCESS; } diff --git a/IO/Cesium3DTiles/TreeInformation.cxx b/IO/Cesium3DTiles/TreeInformation.cxx index af6c2b0f2f3d..bcfe42b03428 100644 --- a/IO/Cesium3DTiles/TreeInformation.cxx +++ b/IO/Cesium3DTiles/TreeInformation.cxx @@ -148,6 +148,7 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod , TexturePath(texturePath) , SaveTextures(saveTextures) , BuildingContentType(contentType) + , PointsPerCubeMeter(1000) , CRS(crs) , NodeBounds(numberOfNodes) , EmptyNode(numberOfNodes) @@ -172,6 +173,7 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod , OutputDir(output) , SaveTextures(false) , BuildingContentType(vtkCesium3DTilesWriter::B3DM) + , PointsPerCubeMeter(1000) , CRS(crs) , NodeBounds(numberOfNodes) , EmptyNode(numberOfNodes) @@ -310,18 +312,18 @@ void TreeInformation::SaveTileGLTF(vtkIncrementalOctreeNode* node, void* aux) void TreeInformation::SaveTilePnts(vtkIncrementalOctreeNode* node, void* auxData) {} //------------------------------------------------------------------------------ -double TreeInformation::ComputeTilesetGeometricError() +double TreeInformation::ComputeGeometricErrorTilesetBuildings() { double tilesetVolumeError; // buildings in child nodes contribute to the error in the parent tilesetVolumeError = this->GeometricError[this->Root->GetID()]; - vtkIdList* childBuildings = this->Root->GetPointIdSet(); - if (childBuildings) + vtkIdList* rootBuildings = this->Root->GetPointIdSet(); + if (rootBuildings) { - for (int i = 0; i < childBuildings->GetNumberOfIds(); ++i) + for (int i = 0; i < rootBuildings->GetNumberOfIds(); ++i) { double bb[6]; - (*this->Buildings)[childBuildings->GetId(i)]->GetBounds(bb); + (*this->Buildings)[rootBuildings->GetId(i)]->GetBounds(bb); double volume = (bb[1] - bb[0]) * (bb[3] - bb[2]) * (bb[5] - bb[4]); tilesetVolumeError += volume; } @@ -329,6 +331,119 @@ double TreeInformation::ComputeTilesetGeometricError() return std::pow(tilesetVolumeError, 1.0 / 3); } +//------------------------------------------------------------------------------ +double TreeInformation::ComputeGeometricErrorNodeBuildings(vtkIncrementalOctreeNode* node) +{ + double geometricError = 0; + if (!node->IsLeaf()) + { + for (int i = 0; i < 8; ++i) + { + // buildings in child nodes contribute to the error in the parent + vtkIncrementalOctreeNode* child = node->GetChild(i); + geometricError += std::pow(this->GeometricError[child->GetID()], 3); + vtkIdList* childBuildings = child->GetPointIdSet(); + if (childBuildings) + { + for (vtkIdType j = 0; j < childBuildings->GetNumberOfIds(); ++j) + { + double bb[6]; + (*this->Buildings)[childBuildings->GetId(j)]->GetBounds(bb); + double volume = (bb[1] - bb[0]) * (bb[3] - bb[2]) * (bb[5] - bb[4]); + geometricError += volume; + } + } + } + } + return std::pow(geometricError, 1 / 3.0); +} + +//------------------------------------------------------------------------------ +double TreeInformation::ComputeGeometricErrorTileset() +{ + double d = 0; + switch (this->InputType) + { + case vtkCesium3DTilesWriter::Buildings: + return ComputeGeometricErrorTilesetBuildings(); + case vtkCesium3DTilesWriter::Points: + return ComputeGeometricErrorTilesetPoints(); + default: + vtkLog(ERROR, "Invalid InputType " << this->InputType); + } + return d; +} + +//------------------------------------------------------------------------------ +double TreeInformation::ComputeGeometricErrorNode(vtkIncrementalOctreeNode* node) +{ + double d = 0; + switch (this->InputType) + { + case vtkCesium3DTilesWriter::Buildings: + return ComputeGeometricErrorNodeBuildings(node); + case vtkCesium3DTilesWriter::Points: + return ComputeGeometricErrorNodePoints(node); + default: + vtkLog(ERROR, "Invalid InputType " << this->InputType); + } + return d; +} + +//------------------------------------------------------------------------------ +double TreeInformation::ComputeGeometricErrorTilesetPoints() +{ + double geometricError; + // buildings in child nodes contribute to the error in the parent + geometricError = this->GeometricError[this->Root->GetID()]; + vtkIdList* rootPoints = this->Root->GetPointIdSet(); + if (rootPoints) + { + int numberOfPoints = rootPoints->GetNumberOfIds(); + double bb[6]; + this->Root->GetBounds(bb); + double volume = (bb[1] - bb[0]) * (bb[3] - bb[2]) * (bb[5] - bb[4]); + numberOfPoints = numberOfPoints > this->PointsPerCubeMeter * volume + ? this->PointsPerCubeMeter * volume + : numberOfPoints; + geometricError = std::max(geometricError, + // scale the volume with the number of points + volume * numberOfPoints / this->PointsPerCubeMeter); + } + return std::pow(geometricError, 1.0 / 3); +} + +//------------------------------------------------------------------------------ +double TreeInformation::ComputeGeometricErrorNodePoints(vtkIncrementalOctreeNode* node) +{ + double geometricError = 0; + if (!node->IsLeaf()) + { + double geometricError = 0; + for (int i = 0; i < 8; ++i) + { + // buildings in child nodes contribute to the error in the parent + vtkIncrementalOctreeNode* child = node->GetChild(i); + geometricError = std::max(geometricError, std::pow(this->GeometricError[child->GetID()], 3)); + vtkIdList* childPoints = child->GetPointIdSet(); + if (childPoints) + { + int numberOfPoints = childPoints->GetNumberOfIds(); + double bb[6]; + child->GetBounds(bb); + double volume = (bb[1] - bb[0]) * (bb[3] - bb[2]) * (bb[5] - bb[4]); + numberOfPoints = numberOfPoints > this->PointsPerCubeMeter * volume + ? this->PointsPerCubeMeter * volume + : numberOfPoints; + geometricError = std::max(geometricError, + // scale the volume with the number of points + volume * numberOfPoints / this->PointsPerCubeMeter); + } + } + } + return std::pow(geometricError, 1 / 3.0); +} + //------------------------------------------------------------------------------ std::array TreeInformation::ComputeTightBB(vtkIdList* tileBuildings) { @@ -360,22 +475,11 @@ void TreeInformation::Compute(vtkIncrementalOctreeNode* node, void*) // propagate the node bounding box from the children. if (!node->IsLeaf()) { + this->GeometricError[node->GetID()] = this->ComputeGeometricErrorNode(node); for (int i = 0; i < 8; ++i) { // buildings in child nodes contribute to the error in the parent vtkIncrementalOctreeNode* child = node->GetChild(i); - this->GeometricError[node->GetID()] += this->GeometricError[child->GetID()]; - vtkIdList* childBuildings = child->GetPointIdSet(); - if (childBuildings) - { - for (vtkIdType j = 0; j < childBuildings->GetNumberOfIds(); ++j) - { - double bb[6]; - (*this->Buildings)[childBuildings->GetId(j)]->GetBounds(bb); - double volume = (bb[1] - bb[0]) * (bb[3] - bb[2]) * (bb[5] - bb[4]); - this->GeometricError[node->GetID()] += volume; - } - } if (!this->EmptyNode[child->GetID()]) { this->NodeBounds[node->GetID()] = @@ -410,7 +514,7 @@ void TreeInformation::SaveTileset(vtkIncrementalOctreeNode* root, const std::str this->RootJson["extensions"][content_gltf][extensionsUsed] = v; this->RootJson["extensions"][content_gltf][extensionsRequired] = v; } - this->RootJson["geometricError"] = this->ComputeTilesetGeometricError(); + this->RootJson["geometricError"] = this->ComputeGeometricErrorTileset(); this->RootJson["root"] = this->GenerateTileJson(root); vtksys::ofstream file(output.c_str()); if (!file) @@ -440,7 +544,7 @@ json TreeInformation::GenerateTileJson(vtkIncrementalOctreeNode* node) v[i] = lonLatRadiansHeight[i]; } tree["boundingVolume"]["region"] = v; - tree["geometricError"] = std::pow(this->GeometricError[node->GetID()], 1.0 / 3); + tree["geometricError"] = this->GeometricError[node->GetID()]; if (node == this->Root) { tree["refine"] = "REPLACE"; diff --git a/IO/Cesium3DTiles/TreeInformation.h b/IO/Cesium3DTiles/TreeInformation.h index 729c46fb96ba..7282dd272b8c 100644 --- a/IO/Cesium3DTiles/TreeInformation.h +++ b/IO/Cesium3DTiles/TreeInformation.h @@ -100,9 +100,18 @@ protected: void Compute(vtkIncrementalOctreeNode* node, void* aux); void SaveTileGLTF(vtkIncrementalOctreeNode* node, void* auxData); void SaveTilePnts(vtkIncrementalOctreeNode* node, void* auxData); - double ComputeTilesetGeometricError(); + + double ComputeGeometricErrorTilesetBuildings(); + double ComputeGeometricErrorTilesetPoints(); + double ComputeGeometricErrorTileset(); + double ComputeGeometricErrorNodeBuildings(vtkIncrementalOctreeNode* node); + double ComputeGeometricErrorNodePoints(vtkIncrementalOctreeNode* node); + double ComputeGeometricErrorNode(vtkIncrementalOctreeNode* node); std::array ComputeTightBB(vtkIdList* tileBuildings); + void SetPointsPerCubeMeter(int value) { this->PointsPerCubeMeter = value; } + int GetPointsPerCubeMeter() const { return this->PointsPerCubeMeter; } + private: /** * Buildings, Points or Mesh. @see vtkCesium3DTilesWriter::InputType @@ -122,6 +131,10 @@ private: std::string TexturePath; bool SaveTextures; int BuildingContentType; + // Number of points for which we consider the full volume as part of the error. + // We clamp the number of points to this value for a larger number of points, + // otherwise we scale the volume with numberOfPoints / PointsPerCubeMeter. + int PointsPerCubeMeter; const char* CRS; /** -- GitLab From e96f8c1147b7b5aa405f17fcf9c2cdd75c423026 Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Sun, 20 Mar 2022 14:51:08 -0400 Subject: [PATCH 0314/1015] json is generated for point clouds. --- IO/Cesium3DTiles/TreeInformation.cxx | 232 +++++++++++++------- IO/Cesium3DTiles/TreeInformation.h | 9 +- IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx | 1 + 3 files changed, 167 insertions(+), 75 deletions(-) diff --git a/IO/Cesium3DTiles/TreeInformation.cxx b/IO/Cesium3DTiles/TreeInformation.cxx index bcfe42b03428..55fa7b872673 100644 --- a/IO/Cesium3DTiles/TreeInformation.cxx +++ b/IO/Cesium3DTiles/TreeInformation.cxx @@ -147,7 +147,7 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod , OutputDir(output) , TexturePath(texturePath) , SaveTextures(saveTextures) - , BuildingContentType(contentType) + , BuildingsContentType(contentType) , PointsPerCubeMeter(1000) , CRS(crs) , NodeBounds(numberOfNodes) @@ -172,7 +172,7 @@ TreeInformation::TreeInformation(vtkIncrementalOctreeNode* root, int numberOfNod , Points(points) , OutputDir(output) , SaveTextures(false) - , BuildingContentType(vtkCesium3DTilesWriter::B3DM) + , BuildingsContentType(vtkCesium3DTilesWriter::B3DM) , PointsPerCubeMeter(1000) , CRS(crs) , NodeBounds(numberOfNodes) @@ -501,7 +501,7 @@ void TreeInformation::SaveTileset(vtkIncrementalOctreeNode* root, const std::str { json v; this->RootJson["asset"]["version"] = "1.0"; - if (this->BuildingContentType != vtkCesium3DTilesWriter::B3DM) + if (this->BuildingsContentType != vtkCesium3DTilesWriter::B3DM) { std::string content_gltf = "3DTILES_content_gltf"; std::string mesh_gpu_instancing = "EXT_mesh_gpu_instancing"; @@ -516,6 +516,14 @@ void TreeInformation::SaveTileset(vtkIncrementalOctreeNode* root, const std::str } this->RootJson["geometricError"] = this->ComputeGeometricErrorTileset(); this->RootJson["root"] = this->GenerateTileJson(root); + switch (this->InputType) + { + case vtkCesium3DTilesWriter::Points: + ConvertDataSetCartesianPoints(); + break; + default: + break; + } vtksys::ofstream file(output.c_str()); if (!file) { @@ -533,12 +541,6 @@ json TreeInformation::GenerateTileJson(vtkIncrementalOctreeNode* node) std::array nodeBounds = this->NodeBounds[node->GetID()]; std::array lonLatRadiansHeight = ToLonLatRadiansHeight(this->CRS, nodeBounds); std::ostringstream ostr; - // std::cout << "lonLatRadiansHeight: " << (lonLatRadiansHeight[0] * 180.0) / vtkMath::Pi() << " " - // << (lonLatRadiansHeight[1] * 180.0) / vtkMath::Pi() << " " - // << (lonLatRadiansHeight[2] * 180.0) / vtkMath::Pi() << " " - // << (lonLatRadiansHeight[3] * 180.0) / vtkMath::Pi() << " " << lonLatRadiansHeight[4] - // << " " - // << lonLatRadiansHeight[5] << " " << std::endl; for (int i = 0; i < 6; ++i) { v[i] = lonLatRadiansHeight[i]; @@ -574,82 +576,164 @@ json TreeInformation::GenerateTileJson(vtkIncrementalOctreeNode* node) { if (!this->EmptyNode[node->GetID()]) { - - PJ* P; - P = proj_create_crs_to_crs(PJ_DEFAULT_CTX, this->CRS, "+proj=cart", nullptr); - if (P == nullptr) + if (this->InputType == vtkCesium3DTilesWriter::Buildings && + !ConvertTileCartesianBuildings(node)) { - vtkLog(ERROR, "proj_create_crs_to_crs failed: " << proj_errno_string(proj_errno(nullptr))); return tree; } - /* For that particular use case, this is not needed. */ - /* proj_normalize_for_visualization() ensures that the coordinate */ - /* order expected and returned by proj_trans() will be longitude, */ - /* latitude for geographic CRS, and easting, northing for projected */ - /* CRS. If instead of using PROJ strings as above, "EPSG:XXXX" codes */ - /* had been used, this might had been necessary. */ - PJ* P_for_GIS = proj_normalize_for_visualization(PJ_DEFAULT_CTX, P); - if (P_for_GIS == nullptr) - { - proj_destroy(P); - vtkLog(ERROR, - "proj_normalize_for_visualization failed: " << proj_errno_string(proj_errno(nullptr))); - return tree; - } - proj_destroy(P); - P = P_for_GIS; + ostr.str(""); + ostr << node->GetID() << "/" << node->GetID() << this->ContentTypeExtension(); + tree["content"]["uri"] = ostr.str(); + } + } + return tree; +} - // transform points to Cartesian coordinates - vtkIdList* pointIds = node->GetPointIds(); - // for each building - for (int i = 0; i < pointIds->GetNumberOfIds(); ++i) +std::string TreeInformation::ContentTypeExtension() const +{ + switch (this->InputType) + { + case vtkCesium3DTilesWriter::Buildings: + return BuildingContentTypeExtension[this->BuildingsContentType]; + case vtkCesium3DTilesWriter::Points: + return ".pnts"; + default: + vtkLog(ERROR, "Invalid InputType " << this->InputType); + return ""; + } +} + +//------------------------------------------------------------------------------ +bool TreeInformation::ConvertTileCartesianBuildings(vtkIncrementalOctreeNode* node) +{ + PJ* P; + P = proj_create_crs_to_crs(PJ_DEFAULT_CTX, this->CRS, "+proj=cart", nullptr); + if (P == nullptr) + { + vtkLog(ERROR, "proj_create_crs_to_crs failed: " << proj_errno_string(proj_errno(nullptr))); + return false; + } + /* For that particular use case, this is not needed. */ + /* proj_normalize_for_visualization() ensures that the coordinate */ + /* order expected and returned by proj_trans() will be longitude, */ + /* latitude for geographic CRS, and easting, northing for projected */ + /* CRS. If instead of using PROJ strings as above, "EPSG:XXXX" codes */ + /* had been used, this might had been necessary. */ + PJ* P_for_GIS = proj_normalize_for_visualization(PJ_DEFAULT_CTX, P); + if (P_for_GIS == nullptr) + { + proj_destroy(P); + vtkLog( + ERROR, "proj_normalize_for_visualization failed: " << proj_errno_string(proj_errno(nullptr))); + return false; + } + proj_destroy(P); + P = P_for_GIS; + + // transform points to Cartesian coordinates + vtkIdList* pointIds = node->GetPointIds(); + // for each building + for (int i = 0; i < pointIds->GetNumberOfIds(); ++i) + { + int buildingId = pointIds->GetId(i); + vtkSmartPointer building = (*this->Buildings)[buildingId]; + auto it = vtk::TakeSmartPointer(building->NewIterator()); + // for each poly data in the building + for (it->InitTraversal(); !it->IsDoneWithTraversal(); it->GoToNextItem()) + { + vtkPolyData* pd = vtkPolyData::SafeDownCast(it->GetCurrentDataObject()); + vtkDataArray* points = pd->GetPoints()->GetData(); + vtkNew newPoints; + vtkDoubleArray* da = vtkArrayDownCast(points); + vtkFloatArray* fa = vtkArrayDownCast(points); + bool conversion = false; + if (!da) { - int buildingId = pointIds->GetId(i); - vtkSmartPointer building = (*this->Buildings)[buildingId]; - auto it = vtk::TakeSmartPointer(building->NewIterator()); - // for each poly data in the building - for (it->InitTraversal(); !it->IsDoneWithTraversal(); it->GoToNextItem()) + if (fa) { - vtkPolyData* pd = vtkPolyData::SafeDownCast(it->GetCurrentDataObject()); - vtkDataArray* points = pd->GetPoints()->GetData(); - vtkNew newPoints; - vtkDoubleArray* da = vtkArrayDownCast(points); - vtkFloatArray* fa = vtkArrayDownCast(points); - bool conversion = false; - if (!da) - { - if (fa) - { - vtkLog(WARNING, "Converting float to double points."); - newPoints->DeepCopy(fa); - da = newPoints; - conversion = true; - } - else - { - vtkLog(ERROR, "Points are not float or double."); - break; - } - } - double* d = da->GetPointer(0); - int n = da->GetNumberOfTuples(); - proj_trans_generic(P, PJ_FWD, d, sizeof(d[0]) * 3, n, d + 1, sizeof(d[0]) * 3, n, d + 2, - sizeof(d[0]) * 3, n, nullptr, 0, 0); - if (conversion) - { - pd->GetPoints()->SetData(newPoints); - } + vtkLog(WARNING, "Converting float to double points."); + newPoints->DeepCopy(fa); + da = newPoints; + conversion = true; + } + else + { + vtkLog(ERROR, "Points are not float or double."); + break; } } - proj_destroy(P); + double* d = da->GetPointer(0); + int n = da->GetNumberOfTuples(); + proj_trans_generic(P, PJ_FWD, d, sizeof(d[0]) * 3, n, d + 1, sizeof(d[0]) * 3, n, d + 2, + sizeof(d[0]) * 3, n, nullptr, 0, 0); + if (conversion) + { + pd->GetPoints()->SetData(newPoints); + } + } + } + proj_destroy(P); + return true; +} - ostr.str(""); - ostr << node->GetID() << "/" << node->GetID() - << BuildingContentTypeExtension[this->BuildingContentType]; - tree["content"]["uri"] = ostr.str(); +//------------------------------------------------------------------------------ +bool TreeInformation::ConvertDataSetCartesianPoints() +{ + PJ* P; + P = proj_create_crs_to_crs(PJ_DEFAULT_CTX, this->CRS, "+proj=cart", nullptr); + if (P == nullptr) + { + vtkLog(ERROR, "proj_create_crs_to_crs failed: " << proj_errno_string(proj_errno(nullptr))); + return false; + } + /* For that particular use case, this is not needed. */ + /* proj_normalize_for_visualization() ensures that the coordinate */ + /* order expected and returned by proj_trans() will be longitude, */ + /* latitude for geographic CRS, and easting, northing for projected */ + /* CRS. If instead of using PROJ strings as above, "EPSG:XXXX" codes */ + /* had been used, this might had been necessary. */ + PJ* P_for_GIS = proj_normalize_for_visualization(PJ_DEFAULT_CTX, P); + if (P_for_GIS == nullptr) + { + proj_destroy(P); + vtkLog( + ERROR, "proj_normalize_for_visualization failed: " << proj_errno_string(proj_errno(nullptr))); + return false; + } + proj_destroy(P); + P = P_for_GIS; + + // transform points to Cartesian coordinates + vtkDataArray* points = this->Points->GetPoints()->GetData(); + vtkNew newPoints; + vtkDoubleArray* da = vtkArrayDownCast(points); + vtkFloatArray* fa = vtkArrayDownCast(points); + bool conversion = false; + if (!da) + { + if (fa) + { + vtkLog(WARNING, "Converting float to double points."); + newPoints->DeepCopy(fa); + da = newPoints; + conversion = true; + } + else + { + vtkLog(ERROR, "Points are not float or double."); + return false; } } - return tree; + double* d = da->GetPointer(0); + int n = da->GetNumberOfTuples(); + proj_trans_generic(P, PJ_FWD, d, sizeof(d[0]) * 3, n, d + 1, sizeof(d[0]) * 3, n, d + 2, + sizeof(d[0]) * 3, n, nullptr, 0, 0); + if (conversion) + { + this->Points->GetPoints()->SetData(newPoints); + } + proj_destroy(P); + return true; } //------------------------------------------------------------------------------ diff --git a/IO/Cesium3DTiles/TreeInformation.h b/IO/Cesium3DTiles/TreeInformation.h index 7282dd272b8c..e1aed0f25794 100644 --- a/IO/Cesium3DTiles/TreeInformation.h +++ b/IO/Cesium3DTiles/TreeInformation.h @@ -92,6 +92,9 @@ protected: vtkIncrementalOctreeNode* node, void* aux); void SaveTileset(vtkIncrementalOctreeNode* root, const std::string& output); nlohmann::json GenerateTileJson(vtkIncrementalOctreeNode* node); + bool ConvertTileCartesianBuildings(vtkIncrementalOctreeNode* node); + bool ConvertDataSetCartesianPoints(); + /** * Computes the additional information for 'node'. This includes * the tight bounding box around the buildings, if the node is empty or not, @@ -108,6 +111,7 @@ protected: double ComputeGeometricErrorNodePoints(vtkIncrementalOctreeNode* node); double ComputeGeometricErrorNode(vtkIncrementalOctreeNode* node); std::array ComputeTightBB(vtkIdList* tileBuildings); + std::string ContentTypeExtension() const; void SetPointsPerCubeMeter(int value) { this->PointsPerCubeMeter = value; } int GetPointsPerCubeMeter() const { return this->PointsPerCubeMeter; } @@ -130,7 +134,7 @@ private: std::string OutputDir; std::string TexturePath; bool SaveTextures; - int BuildingContentType; + int BuildingsContentType; // Number of points for which we consider the full volume as part of the error. // We clamp the number of points to this value for a larger number of points, // otherwise we scale the volume with numberOfPoints / PointsPerCubeMeter. @@ -141,6 +145,9 @@ private: * tight bounds indexed by tile ID */ std::vector> NodeBounds; + /** + * You can have leaf nodes that are empty, that is they don't have any points. + */ std::vector EmptyNode; /** * volume difference between rendering this node and rendering the most detailed model. diff --git a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx index d5d520950f11..b1f0f6e48040 100644 --- a/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx +++ b/IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx @@ -221,6 +221,7 @@ void vtkCesium3DTilesWriter::WriteData() } else if (rootPointCloud) { + vtkDirectory::MakeDirectory(this->DirectoryName); vtkSmartPointer octree = BuildOctree(rootPointCloud, this->NumberOfBuildingsPerTile); TreeInformation treeInformation(octree->GetRoot(), octree->GetNumberOfNodes(), rootPointCloud, -- GitLab From 0466b6472c3368b804f2d01a569f61abe25b7554 Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Mon, 21 Mar 2022 17:16:18 -0400 Subject: [PATCH 0315/1015] Add PointCloudWriter --- IO/Cesium3DTiles/CMakeLists.txt | 3 +- IO/Cesium3DTiles/TreeInformation.cxx | 18 +- .../vtkCesiumPointCloudWriter.cxx | 177 ++++++++++++++++++ IO/Cesium3DTiles/vtkCesiumPointCloudWriter.h | 100 ++++++++++ 4 files changed, 296 insertions(+), 2 deletions(-) create mode 100644 IO/Cesium3DTiles/vtkCesiumPointCloudWriter.cxx create mode 100644 IO/Cesium3DTiles/vtkCesiumPointCloudWriter.h diff --git a/IO/Cesium3DTiles/CMakeLists.txt b/IO/Cesium3DTiles/CMakeLists.txt index c44739d3b4f2..9ee9c60e4621 100644 --- a/IO/Cesium3DTiles/CMakeLists.txt +++ b/IO/Cesium3DTiles/CMakeLists.txt @@ -2,7 +2,8 @@ set(classes vtkCesium3DTilesWriter) set(private_classes - TreeInformation) + TreeInformation + vtkCesiumPointCloudWriter) vtk_module_add_module(VTK::IOCesium3DTiles CLASSES ${classes} diff --git a/IO/Cesium3DTiles/TreeInformation.cxx b/IO/Cesium3DTiles/TreeInformation.cxx index 55fa7b872673..f4df8b6e11f6 100644 --- a/IO/Cesium3DTiles/TreeInformation.cxx +++ b/IO/Cesium3DTiles/TreeInformation.cxx @@ -15,6 +15,7 @@ #include "TreeInformation.h" #include "vtkCesium3DTilesWriter.h" +#include "vtkCesiumPointCloudWriter.h" #include "vtkGLTFWriter.h" #include "vtkMultiBlockDataSet.h" #include @@ -309,7 +310,22 @@ void TreeInformation::SaveTileGLTF(vtkIncrementalOctreeNode* node, void* aux) } //------------------------------------------------------------------------------ -void TreeInformation::SaveTilePnts(vtkIncrementalOctreeNode* node, void* auxData) {} +void TreeInformation::SaveTilePnts(vtkIncrementalOctreeNode* node, void* auxData) +{ + if (node->IsLeaf() && !this->EmptyNode[node->GetID()]) + { + vtkSmartPointer pointIds = node->GetPointIds(); + vtkNew writer; + writer->SetInputDataObject(this->Points); + writer->SetPointIds(pointIds); + std::ostringstream ostr; + ostr << this->OutputDir << "/" << node->GetID(); + vtkDirectory::MakeDirectory(ostr.str().c_str()); + ostr << "/" << node->GetID() << ".gltf"; + writer->SetFileName(ostr.str().c_str()); + writer->Write(); + } +} //------------------------------------------------------------------------------ double TreeInformation::ComputeGeometricErrorTilesetBuildings() diff --git a/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.cxx b/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.cxx new file mode 100644 index 000000000000..49f8163523c5 --- /dev/null +++ b/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.cxx @@ -0,0 +1,177 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkGLTFWriter.cxx + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +#include "vtkCesiumPointCloudWriter.h" +#include "vtkArrayDispatch.h" +#include "vtkAssemblyPath.h" +#include "vtkBase64OutputStream.h" +#include "vtkByteSwap.h" +#include "vtkCamera.h" +#include "vtkCollectionRange.h" +#include "vtkCompositeDataIterator.h" +#include "vtkCompositeDataSet.h" +#include "vtkDataObjectTreeIterator.h" +#include "vtkFloatArray.h" +#include "vtkImageData.h" +#include "vtkImageReader.h" +#include "vtkInformation.h" +#include "vtkJPEGReader.h" +#include "vtkLogger.h" +#include "vtkMapper.h" +#include "vtkMath.h" +#include "vtkMatrix4x4.h" +#include "vtkMultiBlockDataSet.h" +#include "vtkObjectFactory.h" +#include "vtkPNGReader.h" +#include "vtkPNGWriter.h" +#include "vtkPointData.h" +#include "vtkPolyData.h" +#include "vtkProperty.h" +#include "vtkRenderWindow.h" +#include "vtkRendererCollection.h" +#include "vtkStreamingDemandDrivenPipeline.h" +#include "vtkStringArray.h" +#include "vtkTexture.h" +#include "vtkTriangleFilter.h" +#include "vtkTrivialProducer.h" +#include "vtkUnsignedCharArray.h" +#include "vtkUnsignedIntArray.h" + +#include "vtksys/FStream.hxx" +#include "vtksys/SystemTools.hxx" + +#include +#include +#include + +#include "vtk_nlohmannjson.h" +#include VTK_NLOHMANN_JSON(json.hpp) + +vtkStandardNewMacro(vtkCesiumPointCloudWriter); + +vtkCesiumPointCloudWriter::vtkCesiumPointCloudWriter() +{ + this->FileName = nullptr; + this->SaveNormal = false; + this->SaveBatchId = false; +} + +vtkCesiumPointCloudWriter::~vtkCesiumPointCloudWriter() +{ + this->SetFileName(nullptr); +} + +namespace +{ +struct Header +{ + char magic[4]; // magic is written directly instead of being copied here first. + uint32_t version; + uint32_t byteLength; + uint32_t featureTableJSONByteLength; + uint32_t featureTableBinaryByteLength; + uint32_t batchTableJSONByteLength; + uint32_t batchTableBinaryByteLength; +}; + +} + +void vtkCesiumPointCloudWriter::WriteData() +{ + // make sure the user specified a FileName + if (this->FileName == nullptr) + { + vtkErrorMacro(<< "Please specify FileName to use"); + return; + } + vtkPointSet* pointSet = vtkPointSet::SafeDownCast(this->GetInput()); + if (pointSet == nullptr) + { + vtkErrorMacro(<< "Please specify a vtkPointSet input"); + return; + } + if (this->PointIds == nullptr) + { + vtkErrorMacro(<< "Please specify the point Ids to save"); + return; + } + std::ofstream out; + out.open(this->FileName, std::ios_base::out | std::ios_base::binary); + if (out.fail()) + { + vtkErrorMacro(<< "Cannot open " << this->FileName << " for writing."); + return; + } + double bb[6]; + std::array origin; + pointSet->GetBounds(bb); + origin = { { bb[0], bb[2], bb[4] } }; + nlohmann::json featureTable; + featureTable["POINTS_LENGTH"] = this->PointIds->GetNumberOfIds(); + featureTable["RTC_CENTER"] = origin; + featureTable["POSITION"]["byteOffset"] = 0; + std::ostringstream ostr; + ostr << featureTable; + Header header; + header.version = 1; + header.featureTableJSONByteLength = ostr.str().length(); + header.featureTableBinaryByteLength = this->PointIds->GetNumberOfIds() * 4; + header.batchTableJSONByteLength = 0; + header.batchTableBinaryByteLength = 0; + header.byteLength = sizeof(header) + header.featureTableJSONByteLength + + header.featureTableBinaryByteLength + header.batchTableJSONByteLength + + header.batchTableBinaryByteLength; + out.write("pnts", 4); + vtkByteSwap::Swap4LE(&header.version); + vtkByteSwap::Swap4LE(&header.byteLength); + vtkByteSwap::Swap4LE(&header.featureTableJSONByteLength); + vtkByteSwap::Swap4LE(&header.featureTableBinaryByteLength); + vtkByteSwap::Swap4LE(&header.batchTableJSONByteLength); + vtkByteSwap::Swap4LE(&header.batchTableBinaryByteLength); + out.write(ostr.str().c_str(), ostr.str().length()); + for (vtkIdType i = 0; i < this->PointIds->GetNumberOfIds(); ++i) + { + double pointd[3]; + float pointf[3]; + pointSet->GetPoints()->GetPoint(this->PointIds->GetId(i), pointd); + vtkMath::Subtract(pointd, &origin[0], pointd); + for (int j = 0; j < 3; ++j) + { + pointf[0] = pointd[0]; + } + vtkByteSwap::Swap4LE(pointf); + } +} + +void vtkCesiumPointCloudWriter::PrintSelf(ostream& os, vtkIndent indent) +{ + this->Superclass::PrintSelf(os, indent); + if (this->FileName) + { + os << indent << "FileName: " << this->FileName << "\n"; + } + else + { + os << indent << "FileName: (null)\n"; + } + os << indent << "SaveNormal: " << this->SaveNormal << std::endl; + os << indent << "SaveBatchId: " << this->SaveBatchId << std::endl; + os << indent << "PointIds number of ids: " << this->PointIds->GetNumberOfIds() << std::endl; +} + +int vtkCesiumPointCloudWriter::FillInputPortInformation(int, vtkInformation* info) +{ + info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPointSet"); + return 1; +} diff --git a/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.h b/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.h new file mode 100644 index 000000000000..a8474c34a000 --- /dev/null +++ b/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.h @@ -0,0 +1,100 @@ +/*========================================================================= + + Program: Visualization Toolkit + Module: vtkGLTFWriter.h + + Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen + All rights reserved. + See Copyright.txt or http://www.kitware.com/Copyright.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notice for more information. + +=========================================================================*/ +/** + * @class vtkCesiumPointCloudWriter + * @brief export a vtkPointSet into a Cesium Point Cloud tile format + * + */ + +#ifndef vtkCesiumPointCloudWriter_h +#define vtkCesiumPointCloudWriter_h + +#include "vtkIOCesium3DTilesModule.h" // For export macro +#include "vtkSmartPointer.h" +#include "vtkWriter.h" + +class vtkIdList; + +class VTKIOCESIUM3DTILES_EXPORT vtkCesiumPointCloudWriter : public vtkWriter +{ +public: + static vtkCesiumPointCloudWriter* New(); + vtkTypeMacro(vtkCesiumPointCloudWriter, vtkWriter); + void PrintSelf(ostream& os, vtkIndent indent) override; + + ///@{ + /** + * Name of the file to write. + */ + vtkSetStringMacro(FileName); + vtkGetStringMacro(FileName); + ///@} + + ///@{ + /** + * List of points to be saved. + */ + vtkSetSmartPointerMacro(PointIds, vtkIdList); + vtkGetObjectMacro(PointIds, vtkIdList); + ///@} + + ///@{ + /** + * It looks for the normals point attribute and saves it in the + * file if found with the name NORMAL + * Cesium needs this to render buildings correctly + * if there is no texture. + */ + vtkGetMacro(SaveNormal, bool); + vtkSetMacro(SaveNormal, bool); + vtkBooleanMacro(SaveNormal, bool); + ///@} + + ///@{ + /** + * It looks for point arrays called + * _BATCHID in the data and it saves it in the + * GLTF file if found. + * _BATCHID is an index used in 3D Tiles b3dm format. This format stores + * a binary gltf with a mesh that has several objects (buildings). + * Objects are indexed from 0 to number of objects - 1, all points + * of an objects have the same index. These index values are stored + * in _BATCHID + */ + vtkGetMacro(SaveBatchId, bool); + vtkSetMacro(SaveBatchId, bool); + vtkBooleanMacro(SaveBatchId, bool); + ///@} + +protected: + vtkCesiumPointCloudWriter(); + ~vtkCesiumPointCloudWriter() override; + + void WriteData() override; + int FillInputPortInformation(int port, vtkInformation* info) override; + + char* FileName; + bool SaveNormal; + bool SaveBatchId; + vtkSmartPointer PointIds; + +private: + vtkCesiumPointCloudWriter(const vtkCesiumPointCloudWriter&) = delete; + void operator=(const vtkCesiumPointCloudWriter&) = delete; +}; + +#endif + +// VTK-HeaderTest-Exclude: vtkCesiumPointCloudWriter.h -- GitLab From 366afa7ac45853f7128bed0cdbfba45a25a00397 Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Mon, 21 Mar 2022 18:39:14 -0400 Subject: [PATCH 0316/1015] 3d-tiles validator works on points. --- IO/Cesium3DTiles/TreeInformation.cxx | 4 +-- .../vtkCesiumPointCloudWriter.cxx | 27 +++++++++++++------ 2 files changed, 21 insertions(+), 10 deletions(-) diff --git a/IO/Cesium3DTiles/TreeInformation.cxx b/IO/Cesium3DTiles/TreeInformation.cxx index f4df8b6e11f6..43833916d8f3 100644 --- a/IO/Cesium3DTiles/TreeInformation.cxx +++ b/IO/Cesium3DTiles/TreeInformation.cxx @@ -300,7 +300,7 @@ void TreeInformation::SaveTileGLTF(vtkIncrementalOctreeNode* node, void* aux) ostr.str(""); ostr << this->OutputDir << "/" << node->GetID(); vtkDirectory::MakeDirectory(ostr.str().c_str()); - ostr << "/" << node->GetID() << ".gltf"; + ostr << "/" << node->GetID() << this->ContentTypeExtension(); writer->SetFileName(ostr.str().c_str()); writer->SetTextureBaseDirectory(this->TexturePath.c_str()); writer->SetSaveTextures(this->SaveTextures); @@ -321,7 +321,7 @@ void TreeInformation::SaveTilePnts(vtkIncrementalOctreeNode* node, void* auxData std::ostringstream ostr; ostr << this->OutputDir << "/" << node->GetID(); vtkDirectory::MakeDirectory(ostr.str().c_str()); - ostr << "/" << node->GetID() << ".gltf"; + ostr << "/" << node->GetID() << this->ContentTypeExtension(); writer->SetFileName(ostr.str().c_str()); writer->Write(); } diff --git a/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.cxx b/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.cxx index 49f8163523c5..67c7a83dd935 100644 --- a/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.cxx +++ b/IO/Cesium3DTiles/vtkCesiumPointCloudWriter.cxx @@ -124,21 +124,26 @@ void vtkCesiumPointCloudWriter::WriteData() std::ostringstream ostr; ostr << featureTable; Header header; + // the FeatureTable JSON header must end on a 8-byte boundary, so we pad with space. + int paddingSize = (8 - ((sizeof(header) + ostr.str().length()) % 8)) % 8; + for (int i = 0; i < paddingSize; ++i) + { + ostr << ' '; + } + // the FeatureTable binary body must end on a 8-byte boundary, so we pad with 0 + paddingSize = (8 - ((this->PointIds->GetNumberOfIds() * 3 * sizeof(float)) % 8)) % 8; + header.version = 1; header.featureTableJSONByteLength = ostr.str().length(); - header.featureTableBinaryByteLength = this->PointIds->GetNumberOfIds() * 4; + header.featureTableBinaryByteLength = + this->PointIds->GetNumberOfIds() * 3 * sizeof(float) + paddingSize; header.batchTableJSONByteLength = 0; header.batchTableBinaryByteLength = 0; header.byteLength = sizeof(header) + header.featureTableJSONByteLength + header.featureTableBinaryByteLength + header.batchTableJSONByteLength + header.batchTableBinaryByteLength; out.write("pnts", 4); - vtkByteSwap::Swap4LE(&header.version); - vtkByteSwap::Swap4LE(&header.byteLength); - vtkByteSwap::Swap4LE(&header.featureTableJSONByteLength); - vtkByteSwap::Swap4LE(&header.featureTableBinaryByteLength); - vtkByteSwap::Swap4LE(&header.batchTableJSONByteLength); - vtkByteSwap::Swap4LE(&header.batchTableBinaryByteLength); + vtkByteSwap::SwapWrite4LERange(&header.version, 6, &out); out.write(ostr.str().c_str(), ostr.str().length()); for (vtkIdType i = 0; i < this->PointIds->GetNumberOfIds(); ++i) { @@ -150,7 +155,13 @@ void vtkCesiumPointCloudWriter::WriteData() { pointf[0] = pointd[0]; } - vtkByteSwap::Swap4LE(pointf); + vtkByteSwap::SwapWrite4LERange(pointf, 3, &out); + } + // pad the FeatureTable body + char c = 0; + for (int i = 0; i < paddingSize; ++i) + { + out.write(&c, sizeof(c)); } } -- GitLab From 7c0fd117b53a948757b2ea355bc50c59c8a3de8e Mon Sep 17 00:00:00 2001 From: Dan Lipsa Date: Fri, 25 Mar 2022 18:10:40 -0400 Subject: [PATCH 0317/1015] Fix point cloud generation. --- .../Testing/Cxx/TestCesium3DTilesWriter.cxx | 2 +- IO/Cesium3DTiles/TreeInformation.cxx | 11 ++++---- IO/Cesium3DTiles/jacksonville-3dtiles.html | 4 +-- IO/Cesium3DTiles/vtkCesium3DTilesWriter.cxx | 28 +++++++++++++++---- .../vtkCesiumPointCloudWriter.cxx | 4 ++- 5 files changed, 34 insertions(+), 15 deletions(-) diff --git a/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx b/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx index 22b6cf41d771..8a9cbd548639 100644 --- a/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx +++ b/IO/Cesium3DTiles/Testing/Cxx/TestCesium3DTilesWriter.cxx @@ -489,7 +489,7 @@ int TestCesium3DTilesWriter(int argc, char* argv[]) std::cout << "Test jacksonville points" << std::endl; if (!tiler(std::vector{ { dataRoot + "/Data/3DTiles/jacksonville-triangle.obj" } }, vtkCesium3DTilesWriter::Points, tempDirectory + "/jacksonville-3dtiles-points", 3, 3, 2, - std::vector{ { 0, 0, 0 } }, true /*saveTiles*/, false /*saveTextures*/, "", 33, + std::vector{ { 0, 0, 0 } }, true /*saveTiles*/, false /*saveTextures*/, "", 17, 'N')) { return EXIT_FAILURE; diff --git a/IO/Cesium3DTiles/TreeInformation.cxx b/IO/Cesium3DTiles/TreeInformation.cxx index 43833916d8f3..1c47bd706f23 100644 --- a/IO/Cesium3DTiles/TreeInformation.cxx +++ b/IO/Cesium3DTiles/TreeInformation.cxx @@ -566,14 +566,13 @@ json TreeInformation::GenerateTileJson(vtkIncrementalOctreeNode* node) if (node == this->Root) { tree["refine"] = "REPLACE"; - std::array t = { 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, -1.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0, - 0.0, 0.0, 1.0 }; - v.clear(); - for (int i = 0; i < 16; ++i) + if (this->InputType != vtkCesium3DTilesWriter::Points) { - v[i] = t[i]; + // gltf y-up to 3d-tiles z-up transform + std::array t = { 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, -1.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0, + 0.0, 0.0, 1.0 }; + tree["transform"] = t; } - tree["transform"] = v; } // generate json for the node if (!node->IsLeaf()) diff --git a/IO/Cesium3DTiles/jacksonville-3dtiles.html b/IO/Cesium3DTiles/jacksonville-3dtiles.html index ec46d59851a6..aafa437b3439 100644 --- a/IO/Cesium3DTiles/jacksonville-3dtiles.html +++ b/IO/Cesium3DTiles/jacksonville-3dtiles.html @@ -10,8 +10,8 @@