Exodus 7.22

/test/create_mesh.c
/*
* Copyright (c) 2005-2017 National Technology & Engineering Solutions
* of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with
* NTESS, the U.S. Government retains certain rights in this software.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are
* met:
*
* * Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
*
* * Redistributions in binary form must reproduce the above
* copyright notice, this list of conditions and the following
* disclaimer in the documentation and/or other materials provided
* with the distribution.
*
* * Neither the name of NTESS nor the names of its
* contributors may be used to endorse or promote products derived
* from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
* A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
* OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
* SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
* LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
* OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*
*/
#include <assert.h>
#include <inttypes.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "exodusII.h"
#define DEFAULT_FILE_NAME "mesh"
#define DEFAULT_MAP_ORIGIN 1
#define DEFAULT_NUM_DOMAINS 1
#define DEFAULT_NUM_ELEMENTS 1000000
#define DEFAULT_NUM_FIELDS 0
#define DEFAULT_NUM_TIMESTEPS 1
#define MAX_STRING_LEN 128
#define NUM_BYTES_PER_INT 4
#define NUM_NODES_PER_ELEM 8
#define EBLK_ID 100000
#define EXODUSII_FILE_TYPE ".e"
typedef double realtyp;
typedef int64_t INT;
INT StringToCount(char *size_str)
{
INT size = 0;
char range;
int rc;
rc = sscanf(size_str, "%" PRId64 "%c", &size, &range);
if (rc == 2) {
switch ((int)range) {
case 'k':
case 'K': size *= 1000; break;
case 'm':
case 'M': size *= 1000000; break;
case 'g':
case 'G': size *= 1000000000; break;
}
}
else if (rc == 0) {
size = -1;
}
return (size);
} /* StringToCount() */
void get_file_name(const char *base, const char *ext, int rank, int nprocs, const char *other,
char *output);
/* We need to do a cube-root to find the number of elements on each
* side of the cube, but don't want to link in -lm just for
* this. Use this routine which is better than
* a brute force approach. Found at
* http://www.hackersdelight.org/HDcode/icbrt.c
*/
INT icbrt(unsigned x)
{
INT s;
unsigned y, b;
s = 30;
y = 0;
while (s >= 0) { /* Do 11 times. */
y = 2 * y;
b = (3 * y * (y + 1) + 1) << s;
s = s - 3;
if (x >= b) {
x = x - b;
y = y + 1;
}
}
return y;
}
/* Prototypes */
void create_rr_elem_map(INT loc_num_elements, INT *elem_map, INT map_origin, INT num_domains,
INT current_domain);
void create_elem_map(INT loc_num_elems, INT elem_num, INT *elem_map, INT map_origin);
void create_local_connect(INT *node_map, INT len_node_map, INT len_connect, INT *domain_connect,
INT *loc_connect, INT map_origin);
void extract_connect(INT element_offset, INT num_elem, INT *elem_map, INT *connect,
INT *domain_connect, INT map_origin);
void make_mesh(realtyp *x, realtyp *y, realtyp *z, INT *connect, INT map_origin,
INT num_elements_1d);
void parse_input(int argc, char *argv[], int *debug, INT *map_origin, INT *num_elements_1d,
INT *num_domains, INT *num_nodal_fields, INT *num_global_fields,
INT *num_element_fields, INT *num_timesteps, char *file_name, int *exodus,
int *compression_level, int *shuffle, int *int64bit);
void write_exo_mesh(int debug, char *file_name, INT map_origin, INT num_nodes, INT num_elements,
INT num_domains, INT num_nodal_fields, INT num_global_fields,
INT num_element_fields, INT num_timesteps, realtyp *x, realtyp *y, realtyp *z,
INT *connect, int compression_level, int shuffle, int int64bit);
void create_node_map(INT len_map, INT len_connect, INT *domain_connect, INT *node_map,
INT *loc_num_nodes, INT map_origin);
INT bin_search2(INT value, INT num, INT List[]);
/***********************************************************************
*
* Main function
*
***********************************************************************/
int main(int argc, char *argv[])
{
INT *connect;
int debug = EX_FALSE; /* EX_TRUE, display debug information; EX_FALSE */
/* otherwise. */
static char file_name[MAX_STRING_LEN] = DEFAULT_FILE_NAME;
int exodus = EX_TRUE;
INT map_origin = DEFAULT_MAP_ORIGIN;
INT num_domains = DEFAULT_NUM_DOMAINS;
INT num_elements_1d;
INT num_elements = DEFAULT_NUM_ELEMENTS;
INT num_nodal_fields = DEFAULT_NUM_FIELDS;
INT num_global_fields = DEFAULT_NUM_FIELDS;
INT num_element_fields = DEFAULT_NUM_FIELDS;
INT num_timesteps = DEFAULT_NUM_TIMESTEPS;
INT num_nodes;
int compression_level = 0;
int shuffle = 0;
int int64bit = 0;
size_t size;
realtyp *x;
realtyp *y;
realtyp *z;
ex_opts(EX_VERBOSE | EX_ABORT);
/* Parse Input */
parse_input(argc, argv, &debug, &map_origin, &num_elements, &num_domains, &num_nodal_fields,
&num_global_fields, &num_element_fields, &num_timesteps, file_name, &exodus,
&compression_level, &shuffle, &int64bit);
/* Create Coordinates and Connectivity Array */
num_elements_1d = icbrt(num_elements);
num_nodes = (num_elements_1d + 1) * (num_elements_1d + 1) * (num_elements_1d + 1);
x = malloc(num_nodes * sizeof(realtyp));
y = malloc(num_nodes * sizeof(realtyp));
z = malloc(num_nodes * sizeof(realtyp));
assert(x != NULL && y != NULL && z != NULL);
num_elements = num_elements_1d * num_elements_1d * num_elements_1d;
size = (size_t)NUM_NODES_PER_ELEM * num_elements * sizeof(INT);
assert(size > 0);
connect = malloc(size);
assert(connect != NULL);
fprintf(stderr, "Creating a 3D mesh of %" PRId64 " hex elements and %" PRId64 " nodes.\n",
num_elements, num_nodes);
make_mesh(x, y, z, connect, map_origin, num_elements_1d);
fprintf(stderr, "\t...Mesh topology created.\n");
/*
* Write Out Mesh
*/
if (exodus) {
write_exo_mesh(debug, file_name, map_origin, num_nodes, num_elements, num_domains,
num_nodal_fields, num_global_fields, num_element_fields, num_timesteps, x, y, z,
connect, compression_level, shuffle, int64bit);
}
free(x);
free(y);
free(z);
free(connect);
return 0;
} /* end of main() */
/***********************************************************************
***********************************************************************/
void parse_input(int argc, char *argv[], int *debug, INT *map_origin, INT *num_elements_1d,
INT *num_domains, INT *num_nodal_fields, INT *num_global_fields,
INT *num_element_fields, INT *num_timesteps, char *file_name, int *exodus,
int *compression_level, int *shuffle, int *int64bit)
{
int arg = 0; /* Argument index. */
while (++arg < argc) {
if (strcmp("-c", argv[arg]) == 0) {
if (++arg < argc) {
*num_nodal_fields = atoi(argv[arg]);
}
}
else if (strcmp("-compress", argv[arg]) == 0) {
if (++arg < argc) {
*compression_level = atoi(argv[arg]);
}
}
else if (strcmp("-shuffle", argv[arg]) == 0) {
*shuffle = 1;
}
else if (strcmp("-64", argv[arg]) == 0) {
*int64bit = 1;
}
else if (strcmp("-nv", argv[arg]) == 0) {
if (++arg < argc) {
*num_nodal_fields = atoi(argv[arg]);
}
}
else if (strcmp("-gv", argv[arg]) == 0) {
if (++arg < argc) {
*num_global_fields = atoi(argv[arg]);
}
}
else if (strcmp("-ev", argv[arg]) == 0) {
if (++arg < argc) {
*num_element_fields = atoi(argv[arg]);
}
}
else if (strcmp("-t", argv[arg]) == 0) {
if (++arg < argc) {
*num_timesteps = atoi(argv[arg]);
}
}
else if (strcmp("-d", argv[arg]) == 0) {
*debug = EX_TRUE;
}
else if (strcmp("-f", argv[arg]) == 0) {
if (++arg < argc) {
ex_copy_string(file_name, argv[arg], MAX_STRING_LEN);
}
}
else if (strcmp("-m", argv[arg]) == 0) {
if (++arg < argc) {
*map_origin = atoi(argv[arg]);
}
}
else if (strcmp("-n", argv[arg]) == 0) {
if (++arg < argc) {
*num_elements_1d = StringToCount(argv[arg]);
}
}
else if (strcmp("-p", argv[arg]) == 0) {
if (++arg < argc) {
*num_domains = atoi(argv[arg]);
}
}
else if (strcmp("-x", argv[arg]) == 0) {
*exodus = EX_TRUE;
}
else if ((strcmp("-h", argv[arg]) == 0) || (strcmp("-u", argv[arg]) == 0)) {
printf(" \n");
printf("NAME \n");
printf(" \n");
printf("create_mesh - creates a mesh file for performance benchmarking. \n");
printf(" \n");
printf("SYNOPSIS \n");
printf(" \n");
printf("create_mesh [-c fields] [-t timesteps] [-d] [-f file_name] \n");
printf(" [-m map_origin] [-n elements] [-p domains] \n");
printf(" [-nv number] [-ev number] [-gv number] ");
printf(" [-r] [-u] [-h] ");
printf("[-x]");
printf(" \n");
printf(" \n");
printf("DESCRIPTION \n");
printf(" \n");
printf("This program creates a 3-D mesh for performance benchmarking. \n");
printf("The EXODUSII II database file(s) created by this \n");
printf("prrogram is/are read by the rd_wt_mesh program to perform the \n");
printf("actual benchmark. \n");
printf(" \n");
printf("OPTIONS \n");
printf(" \n");
printf("-c fields number of nodal fields. Default: %d \n",
DEFAULT_NUM_FIELDS);
printf("-nv fields number of nodal fields. Default: %d \n",
DEFAULT_NUM_FIELDS);
printf("-ev fields number of element fields. Default: %d \n",
DEFAULT_NUM_FIELDS);
printf("-gv fields number of global fields. Default: %d \n",
DEFAULT_NUM_FIELDS);
printf("-t timesteps number of timesteps. Default: %d \n",
DEFAULT_NUM_TIMESTEPS);
printf("-d display debug information. \n");
printf("-f file_name file name prefix for all created files: \n");
printf(" \n");
printf(" 'file_name'_n%s [EXODUSII II file] \n",
EXODUSII_FILE_TYPE);
printf(" \n");
printf(" where n varies from 0 to number of domains-1. \n");
printf(" Default: %s \n",
DEFAULT_FILE_NAME);
printf("-h display help/usage information. \n");
printf("-m map_origin element map origin. Default: %d \n",
DEFAULT_MAP_ORIGIN);
printf("-n elements number of elements in mesh \n");
printf(" Can suffix with 'k', 'm', 'g' for thousand, million, billion\n");
printf(" elements/file = elements/number_of_domains. \n");
printf(" Default: %d \n",
DEFAULT_NUM_ELEMENTS);
printf("-p domains number of domains. Default: %d \n",
DEFAULT_NUM_DOMAINS);
printf("-compress val set compression to level 'val' [0..9] \n");
printf("-shuffle enable hdf5-shuffle \n");
printf("-64 enable 64-bit integers \n");
printf("-u display help/usage information. \n");
exit(0);
}
else {
fprintf(stderr, "Unknown option: %s\n", argv[arg]);
fprintf(stderr, "Enter create_mesh -h for description of valid options.\n");
exit(0);
}
}
return;
}
/***********************************************************************
*
* Create the coordinates and connectivity array for the mesh
*
***********************************************************************/
void make_mesh(realtyp *x, realtyp *y, realtyp *z, INT *connect, INT map_origin,
INT num_elements_1d)
{
size_t i, j, k, m, base, cnt;
size_t elp1sq = (num_elements_1d + 1) * (num_elements_1d + 1);
/* create global coordinates */
for (m = 0, k = 0; m < (num_elements_1d + 1); m++) {
for (i = 0; i < (num_elements_1d + 1); i++) {
for (j = 0; j < (num_elements_1d + 1); j++, k++) {
x[k] = (realtyp)j;
y[k] = (realtyp)i;
z[k] = (realtyp)m;
}
}
}
/* build connectivity array (node list) for mesh */
for (m = 0, k = 0, cnt = 0; m < num_elements_1d; m++) {
for (i = 0, k = 0; i < num_elements_1d; i++) {
for (j = 0; j < num_elements_1d; j++, k++) {
base = (m * elp1sq) + k + i + map_origin;
connect[cnt++] = base;
connect[cnt++] = base + 1;
connect[cnt++] = base + num_elements_1d + 2;
connect[cnt++] = base + num_elements_1d + 1;
connect[cnt++] = elp1sq + base;
connect[cnt++] = elp1sq + base + 1;
connect[cnt++] = elp1sq + base + num_elements_1d + 2;
connect[cnt++] = elp1sq + base + num_elements_1d + 1;
}
}
}
} /* end of make_mesh() */
/***********************************************************************
***********************************************************************/
void write_exo_mesh(int debug, char *file_name, INT map_origin, INT num_nodes, INT num_elements,
INT num_domains, INT num_nodal_fields, INT num_global_fields,
INT num_element_fields, INT num_timesteps, realtyp *x, realtyp *y, realtyp *z,
INT *connect, int compression_level, int shuffle, int int64bit)
{
int CPU_word_size = sizeof(realtyp);
int IO_word_size = sizeof(realtyp);
int exoid, err, num_dim, num_elem_blk, num_node_sets, num_side_sets;
INT i, j, t, index, loc_num_elements, loc_num_nodes, len_connect;
INT *elem_map = NULL, *node_map = NULL, *domain_connect = NULL, *loc_connect = NULL;
int *elem_var_tab;
INT accum_num_elements = 0;
INT loc_node_size = -1;
realtyp *loc_xcoords = NULL;
realtyp *loc_ycoords = NULL;
realtyp *loc_zcoords = NULL;
realtyp *globals = NULL;
char temporary_name[MAX_STRING_LEN];
char **var_name;
accum_num_elements = 0;
for (i = 0; i < num_domains; i++) {
int mymode = EX_MAPS_INT64_API | EX_BULK_INT64_API | EX_IDS_INT64_API;
if (int64bit) {
mymode |= EX_MAPS_INT64_DB | EX_BULK_INT64_DB | EX_IDS_INT64_DB;
}
/* create the EXODUSII file */
get_file_name(file_name, "e", i, num_domains, NULL, temporary_name);
exoid = ex_create(temporary_name, EX_CLOBBER | mymode, &CPU_word_size, &IO_word_size);
if (exoid < 0) {
fprintf(stderr, "after ex_create, error = %d\n", exoid);
exit(-1);
}
ex_set_option(exoid, EX_OPT_COMPRESSION_LEVEL, compression_level);
ex_set_option(exoid, EX_OPT_COMPRESSION_SHUFFLE, shuffle);
if (num_domains > 1) {
/* Determine local number of elements */
if (num_elements < num_domains) {
fprintf(stderr, "number of elements is less than number of domains.\n");
if (i < num_elements) {
loc_num_elements = 1;
}
else {
loc_num_elements = 0;
}
}
else {
loc_num_elements = num_elements / num_domains;
if (i < (num_elements % num_domains)) {
loc_num_elements++;
}
}
len_connect = NUM_NODES_PER_ELEM * loc_num_elements;
/* malloc things we need */
if (i == 0) { /* first time through; max size arrays occur on
first iteration */
elem_map = malloc(loc_num_elements * sizeof(INT));
domain_connect = malloc(len_connect * sizeof(INT));
loc_connect = malloc(len_connect * sizeof(INT));
node_map = malloc(num_nodes * sizeof(INT));
}
/* Create element local/global map */
create_elem_map(loc_num_elements, accum_num_elements, elem_map, map_origin);
/* Extract current domain's connectivity, referencing global node ids */
extract_connect(accum_num_elements, loc_num_elements, elem_map, connect, domain_connect,
map_origin);
accum_num_elements += loc_num_elements;
/* The local/global node map is just the current domain's connectivity,
sorted with duplicate entries removed */
create_node_map(num_nodes, len_connect, domain_connect, node_map, &loc_num_nodes, map_origin);
/* Using local/global node map, convert the domain connectivity
(referencing global node ids) to local connectivity (referencing
local node ids) */
create_local_connect(node_map, loc_num_nodes, len_connect, domain_connect, loc_connect,
map_origin);
}
else {
loc_num_elements = num_elements;
loc_num_nodes = num_nodes;
}
if (debug) {
fprintf(stderr, "\n\n\n");
fprintf(stderr, "\n domain: %" PRId64 "\n", i);
fprintf(stderr, "\n loc_num_elements: %" PRId64 "\n", loc_num_elements);
fprintf(stderr, "\n loc_num_nodes: %" PRId64 "\n", loc_num_nodes);
}
num_dim = 3;
num_elem_blk = 1;
num_node_sets = 0;
num_side_sets = 0;
err = ex_put_init(exoid, "This is an EXODUSII performance test.", num_dim, loc_num_nodes,
loc_num_elements, num_elem_blk, num_node_sets, num_side_sets);
if (err) {
fprintf(stderr, "after ex_put_init, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
/* Extract the local x and y coordinates */
if (num_domains > 1) {
if (loc_num_nodes > loc_node_size) {
loc_xcoords = realloc(loc_xcoords, loc_num_nodes * sizeof(realtyp));
loc_ycoords = realloc(loc_ycoords, loc_num_nodes * sizeof(realtyp));
loc_zcoords = realloc(loc_zcoords, loc_num_nodes * sizeof(realtyp));
loc_node_size = loc_num_nodes;
}
for (j = 0; j < loc_num_nodes; j++) {
index = node_map[j] - map_origin;
loc_xcoords[j] = x[index];
loc_ycoords[j] = y[index];
loc_zcoords[j] = z[index];
}
err = ex_put_coord(exoid, loc_xcoords, loc_ycoords, loc_zcoords);
}
else {
err = ex_put_coord(exoid, x, y, z);
}
if (err) {
fprintf(stderr, "after ex_put_coord, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
if (debug) {
fprintf(stderr, "\tCoordinates output.\n");
}
#if 1
{
INT ids[1] = {EBLK_ID};
INT num_elem_per_block[1];
char *names[1] = {"hex"};
INT num_node_per_elem[1];
INT num_attr_per_block[1];
int write_map = num_domains > 1 ? EX_TRUE : EX_FALSE;
num_elem_per_block[0] = loc_num_elements;
num_node_per_elem[0] = NUM_NODES_PER_ELEM;
num_attr_per_block[0] = 0;
err = ex_put_concat_elem_block(exoid, ids, names, num_elem_per_block, num_node_per_elem,
num_attr_per_block, write_map);
}
#else
err = ex_put_block(exoid, EX_ELEM_BLOCK, 10000000000, "hex", loc_num_elements,
NUM_NODES_PER_ELEM, 0);
#endif
if (err) {
fprintf(stderr, "after ex_put_elem_block, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
if (num_domains > 1) {
err = ex_put_conn(exoid, EX_ELEM_BLOCK, EBLK_ID, loc_connect, NULL, NULL);
}
else {
err = ex_put_conn(exoid, EX_ELEM_BLOCK, EBLK_ID, connect, NULL, NULL);
}
if (err) {
fprintf(stderr, "after ex_put_elem_conn, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
if (debug) {
fprintf(stderr, "\tConnectivity output.\n");
}
/* write out element and node maps */
if (num_domains > 1) {
err = ex_put_id_map(exoid, EX_NODE_MAP, node_map);
if (err) {
fprintf(stderr, "after ex_put_id_map, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
err = ex_put_id_map(exoid, EX_ELEM_MAP, elem_map);
if (err) {
fprintf(stderr, "after ex_put_id_map, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
if (debug) {
fprintf(stderr, "\tMaps output.\n");
}
}
/* write out simulated results fields;
we'll just write out the x coordinate field 'num_nodal_fields' times */
if (loc_num_nodes < loc_num_elements) {
fprintf(stderr, "INTERNAL ERROR: Programmer assumed number of nodes > number of elements, "
"but that is not true.\n");
ex_close(exoid);
exit(-1);
}
if (num_element_fields > 0) {
elem_var_tab = malloc(num_element_fields * sizeof(int));
for (j = 0; j < num_element_fields; j++) {
elem_var_tab[j] = 1;
}
}
else {
elem_var_tab = 0;
}
err = ex_put_all_var_param(exoid, num_global_fields, num_nodal_fields, num_element_fields,
elem_var_tab, 0, 0, 0, 0);
if (err) {
fprintf(stderr, "after ex_put_all_var_param, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
if (num_nodal_fields > 0) {
var_name = malloc(num_nodal_fields * sizeof(char *));
for (j = 0; j < num_nodal_fields; j++) {
var_name[j] = malloc((MAX_STRING_LEN + 1) * sizeof(char));
sprintf(var_name[j], "node_field_%" PRId64, j + 1);
}
err = ex_put_variable_names(exoid, EX_NODAL, num_nodal_fields, var_name);
for (j = 0; j < num_nodal_fields; j++) {
free(var_name[j]);
}
free(var_name);
}
if (num_global_fields > 0) {
globals = malloc(num_global_fields * sizeof(realtyp));
var_name = malloc(num_global_fields * sizeof(char *));
for (j = 0; j < num_global_fields; j++) {
var_name[j] = malloc((MAX_STRING_LEN + 1) * sizeof(char));
sprintf(var_name[j], "global_field_%" PRId64, j + 1);
globals[j] = j;
}
err = ex_put_variable_names(exoid, EX_GLOBAL, num_global_fields, var_name);
for (j = 0; j < num_global_fields; j++) {
free(var_name[j]);
}
free(var_name);
}
if (num_element_fields > 0) {
free(elem_var_tab);
var_name = malloc(num_element_fields * sizeof(char *));
for (j = 0; j < num_element_fields; j++) {
var_name[j] = malloc((MAX_STRING_LEN + 1) * sizeof(char));
sprintf(var_name[j], "element_field_%" PRId64, j + 1);
}
err = ex_put_variable_names(exoid, EX_ELEM_BLOCK, num_element_fields, var_name);
for (j = 0; j < num_element_fields; j++) {
free(var_name[j]);
}
free(var_name);
}
if (num_nodal_fields + num_global_fields + num_element_fields > 0) {
fprintf(stderr, "Domain %" PRId64 "/%" PRId64 ", Writing Timestep: ", i + 1, num_domains);
for (t = 0; t < num_timesteps; t++) {
realtyp time = t;
ex_put_time(exoid, t + 1, &time);
fprintf(stderr, "%" PRId64 ", ", t + 1);
if (num_global_fields > 0) {
err = ex_put_var(exoid, t + 1, EX_GLOBAL, 1, 0, num_global_fields, globals);
if (err) {
fprintf(stderr, "after ex_put_global_var, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
}
for (j = 0; j < num_nodal_fields; j++) {
err = ex_put_var(exoid, t + 1, EX_NODAL, j + 1, 0, loc_num_nodes, x);
if (err) {
fprintf(stderr, "after ex_put_nodal_var, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
}
for (j = 0; j < num_element_fields; j++) {
err = ex_put_var(exoid, t + 1, EX_ELEM_BLOCK, j + 1, EBLK_ID, loc_num_elements, x);
if (err) {
fprintf(stderr, "after ex_put_element_var, error = %d\n", err);
ex_close(exoid);
exit(-1);
}
}
}
fprintf(stderr, "\n");
}
err = ex_close(exoid);
if (err) {
fprintf(stderr, "after ex_close, error = %d\n", err);
exit(-1);
}
if (debug) {
fprintf(stderr, "\tFile written.\n");
}
}
/*
* Free Memory
*/
if (num_domains > 1) {
free(domain_connect);
free(elem_map);
free(loc_connect);
free(loc_xcoords);
free(loc_ycoords);
free(loc_zcoords);
free(node_map);
}
if (num_global_fields > 0) {
free(globals);
}
}
/***********************************************************************
*
* Create element local/global map
*
* This puts contiguous groups of elements in each domain. This is
* a somewhat reasonable map for a realistic application.
*
***********************************************************************/
void create_elem_map(INT loc_num_elems, INT elem_num, INT *elem_map, INT map_origin)
{
INT i;
for (i = 0; i < loc_num_elems; i++) {
elem_map[i] = map_origin + elem_num++;
}
}
/***********************************************************************
*
* Extract current domain's connectivity, referencing global node ids
*
* This extracts the "domain connectivity," that is, the connectivity
* of the elements in the current domain. The node ids in the domain
* connectivity reference global node ids.
*
***********************************************************************/
void extract_connect(INT element_offset, INT num_elem, INT *elem_map, INT *connect,
INT *domain_connect, INT map_origin)
{
INT i, j, k, m, offset;
for (i = element_offset, j = 0, m = 0; j < num_elem; j++) {
if (elem_map[j] == i + map_origin) { /* extract this element */
offset = (i * NUM_NODES_PER_ELEM);
for (k = offset; k < offset + NUM_NODES_PER_ELEM; k++) {
domain_connect[m++] = connect[k];
}
i++;
}
}
}
/***********************************************************************
*
* The local/global node map is just the current domain's connectivity,
* sorted, with duplicate entries removed. This isn't obvious, but
* trust me.
*
***********************************************************************/
void create_node_map(INT len_map, INT len_connect, INT *domain_connect, INT *node_map,
INT *loc_num_nodes, INT map_origin)
{
INT cnt, i;
for (i = 0; i < len_map; i++) {
node_map[i] = 0;
}
for (i = 0; i < len_connect; i++) {
node_map[domain_connect[i] - map_origin] = 1;
}
cnt = 0;
for (i = 0; i < len_map; i++) {
if (node_map[i] > 0) {
node_map[cnt++] = i + map_origin;
}
}
*loc_num_nodes = cnt;
}
/***********************************************************************
*
* Using local/global node map, convert the domain connectivity
* (referencing global node ids) to local connectivity (referencing
* local node ids).
*
* This requires inverting the local/global map, a relatively expensive
* operation. The procedure is:
*
* for every entry in the domain connectivity
* search the node map until found
* set the value of the entry in the local connectivity to
* the index of the located value in the node map
*
***********************************************************************/
void create_local_connect(INT *node_map, INT len_node_map, INT len_connect, INT *domain_connect,
INT *loc_connect, INT map_origin)
{
INT i, index;
for (i = 0; i < len_connect; i++) {
index = bin_search2(domain_connect[i], len_node_map, node_map);
if (index != -1) { /* found */
loc_connect[i] = index + map_origin;
}
else {
fprintf(stderr, "error creating local connectivity; i = %" PRId64 "\n", i);
exit(-1);
}
}
}
/*****************************************************************************
*
* Searches a monotonic list of values for the value, 'value'.
* It returns the index (0-based) of the first position found, which
* matches 'value'.
* The list is assumed to be monotonic, and consist of elements
* list[0], ..., list[n-1].
* If no position in list matches value, it returns the value -1.
*
*****************************************************************************/
INT bin_search2(INT value, INT num, INT List[])
{
INT top, bottom = 0, middle, g_mid;
top = num - 1;
while (bottom <= top) {
middle = (bottom + top) >> 1;
g_mid = List[middle];
if (value < g_mid) {
top = middle - 1;
}
else if (value > g_mid) {
bottom = middle + 1;
}
else {
return middle; /* found */
}
}
return -1;
} /* bin_search2 */
/*****************************************************************************/
void get_file_name(const char *base, const char *ext, int rank, int nprocs, const char *other,
char *output)
{
INT i1, iTemp1;
INT iMaxDigit = 0, iMyDigit = 0;
char cTemp[128];
output[0] = '\0';
ex_copy_string(output, base, MAX_STRING_LEN);
strcat(output, ".");
strcat(output, ext);
if (other != NULL) {
strcat(output, ".");
strcat(output, other);
}
if (nprocs > 1) {
/*
* Find out the number of digits needed to specify the processor ID.
* This allows numbers like 01-99, i.e., prepending zeros to the
* name to preserve proper alphabetic sorting of the files.
*/
iTemp1 = nprocs;
do {
iTemp1 /= 10;
iMaxDigit++;
} while (iTemp1 >= 1);
iTemp1 = rank;
do {
iTemp1 /= 10;
iMyDigit++;
} while (iTemp1 >= 1);
strcat(output, ".");
sprintf(cTemp, "%d", nprocs);
strcat(output, cTemp);
strcat(output, ".");
/*
* Append the proper number of zeros to the filename.
*/
for (i1 = 0; i1 < iMaxDigit - iMyDigit; i1++) {
strcat(output, "0");
}
sprintf(cTemp, "%d", rank);
strcat(output, cTemp);
}
}
ex_put_block
int ex_put_block(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, const char *entry_descrip, int64_t num_entries_this_blk, int64_t num_nodes_per_entry, int64_t num_edges_per_entry, int64_t num_faces_per_entry, int64_t num_attr_per_entry)
Definition: ex_put_block.c:73
EX_IDS_INT64_DB
#define EX_IDS_INT64_DB
Definition: exodusII.h:131
EX_MAPS_INT64_DB
#define EX_MAPS_INT64_DB
Definition: exodusII.h:130
ex_opts
int ex_opts(int options)
Definition: ex_opts.c:83
EX_FALSE
#define EX_FALSE
Definition: exodusII.h:102
ex_put_all_var_param
int ex_put_all_var_param(int exoid, int num_g, int num_n, int num_e, int *elem_var_tab, int num_m, int *nset_var_tab, int num_s, int *sset_var_tab)
Definition: ex_put_all_var_param.c:71
ex_put_time
int ex_put_time(int exoid, int time_step, const void *time_value)
Definition: ex_put_time.c:78
ex_set_option
int ex_set_option(int exoid, ex_option_type option, int option_value)
Definition: ex_conv.c:411
ex_put_concat_elem_block
int ex_put_concat_elem_block(int exoid, const void_int *elem_blk_id, char *elem_type[], const void_int *num_elem_this_blk, const void_int *num_nodes_per_elem, const void_int *num_attr_this_blk, int define_maps)
Definition: ex_put_concat_elem_block.c:62
EX_NODE_MAP
Definition: exodusII.h:267
ex_create
#define ex_create(path, mode, comp_ws, io_ws)
Definition: exodusII.h:444
ex_put_id_map
int ex_put_id_map(int exoid, ex_entity_type map_type, const void_int *map)
Definition: ex_put_id_map.c:63
EX_BULK_INT64_DB
#define EX_BULK_INT64_DB
Definition: exodusII.h:132
EX_MAPS_INT64_API
#define EX_MAPS_INT64_API
Definition: exodusII.h:139
EX_TRUE
#define EX_TRUE
Definition: exodusII.h:98
ex_close
int ex_close(int exoid)
Definition: ex_close.c:73
EX_GLOBAL
Definition: exodusII.h:271
EX_ABORT
Definition: exodusII.h:284
EX_ELEM_MAP
Definition: exodusII.h:266
ex_put_variable_names
int ex_put_variable_names(int exoid, ex_entity_type obj_type, int num_vars, char *var_names[])
Definition: ex_put_variable_names.c:151
EX_CLOBBER
#define EX_CLOBBER
Definition: exodusII.h:114
EX_NODAL
Definition: exodusII.h:254
ex_put_conn
int ex_put_conn(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, const void_int *node_conn, const void_int *elem_edge_conn, const void_int *elem_face_conn)
Definition: ex_put_conn.c:71
exodusII.h
EX_OPT_COMPRESSION_SHUFFLE
Definition: exodusII.h:245
ex_put_init
int ex_put_init(int exoid, const char *title, int64_t num_dim, int64_t num_nodes, int64_t num_elem, int64_t num_elem_blk, int64_t num_node_sets, int64_t num_side_sets)
Definition: ex_put_init.c:80
EX_IDS_INT64_API
#define EX_IDS_INT64_API
Definition: exodusII.h:140
ex_put_coord
int ex_put_coord(int exoid, const void *x_coor, const void *y_coor, const void *z_coor)
Definition: ex_put_coord.c:113
EX_ELEM_BLOCK
Definition: exodusII.h:261
EX_VERBOSE
Definition: exodusII.h:282
EX_OPT_COMPRESSION_LEVEL
Definition: exodusII.h:244
EX_BULK_INT64_API
#define EX_BULK_INT64_API
Definition: exodusII.h:141
ex_put_var
int ex_put_var(int exoid, int time_step, ex_entity_type var_type, int var_index, ex_entity_id obj_id, int64_t num_entries_this_obj, const void *var_vals)
Definition: ex_put_var.c:238
ex_copy_string
char * ex_copy_string(char *dest, char const *source, size_t elements)
Definition: ex_utils.c:2174