IOSS 2.0

Iocgns_Utils.h
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32
33 #ifndef IOSS_IOCGNS_UTILS_H
34 #define IOSS_IOCGNS_UTILS_H
35
36 #include <Ioss_CodeTypes.h>
37 #include <Ioss_DatabaseIO.h>
38 #include <Ioss_ElementTopology.h>
39 #include <Ioss_Region.h>
40 #include <Ioss_SideBlock.h>
41 #include <Ioss_SideSet.h>
42 #include <Ioss_StructuredBlock.h>
43 #include <Ioss_Utils.h>
44 #include <cgnslib.h>
45 #include <ostream>
46 #include <string>
47
48 // Used in Iocgns_DatabaseIO.C and Iocgns_ParallelDatabase.C
49 // non-Member function -- can't access m_cgnsFilePtr; make sure cgns_file_ptr is passed in...
50 #define CGCHECK(funcall) \
51 if ((funcall) != CG_OK) { \
52 Iocgns::Utils::cgns_error(cgns_file_ptr, __FILE__, __func__, __LINE__, myProcessor); \
53 }
54
55 // Member function -- can access m_cgnsFilePtr
56 #define CGCHECKM(funcall) \
57 if ((funcall) != CG_OK) { \
58 Iocgns::Utils::cgns_error(m_cgnsFilePtr, __FILE__, __func__, __LINE__, myProcessor); \
59 }
60
61 #define CGCHECKNP(funcall) \
62 if ((funcall) != CG_OK) { \
63 Iocgns::Utils::cgns_error(cgns_file_ptr, __FILE__, __func__, __LINE__, -1); \
64 }
65
66 // Used in Iocgns_Decomposition.C
67 #define CGCHECK2(funcall) \
68 if ((funcall) != CG_OK) { \
69 Iocgns::Utils::cgns_error(filePtr, __FILE__, __func__, __LINE__, m_decomposition.m_processor); \
70 }
71
72 namespace Iocgns {
73 class StructuredZoneData;
74
75 class Utils
76 {
77 public:
78 Utils() = default;
79 ~Utils() = default;
80
81 static const size_t CG_CELL_CENTER_FIELD_ID = 1ul << 33;
82 static const size_t CG_VERTEX_FIELD_ID = 1ul << 34;
83
84 static size_t index(const Ioss::Field &field);
85
86 static void cgns_error(int cgnsid, const char *file, const char *function, int lineno,
87 int processor);
88
89 static void update_db_zone_property(int cgns_file_ptr, const Ioss::Region *region,
90 int myProcessor, bool is_parallel, bool is_parallel_io);
91 static int get_db_zone(const Ioss::EntityBlock *block);
92 static void set_field_index(const Ioss::Field &field, size_t index, CG_GridLocation_t location);
93 static bool is_cell_field(const Ioss::Field &field);
94
95 template <typename INT>
96 static void map_cgns_face_to_ioss(const Ioss::ElementTopology *parent_topo, size_t num_to_get,
97 INT *idata)
98 {
99 // The {topo}_map[] arrays map from CGNS face# to IOSS face#.
100 // See http://cgns.github.io/CGNS_docs_current/sids/conv.html#unstructgrid
101 // NOTE: '0' for first entry is to account for 1-based face numbering.
102
103 switch (parent_topo->shape()) {
104 case Ioss::ElementShape::HEX:
105 static int hex_map[] = {0, 5, 1, 2, 3, 4, 6};
106 for (size_t i = 0; i < num_to_get; i++) {
107 idata[2 * i + 1] = hex_map[idata[2 * i + 1]];
108 }
109 break;
110
111 case Ioss::ElementShape::TET:
112 static int tet_map[] = {0, 4, 1, 2, 3};
113 for (size_t i = 0; i < num_to_get; i++) {
114 idata[2 * i + 1] = tet_map[idata[2 * i + 1]];
115 }
116 break;
117
118 case Ioss::ElementShape::PYRAMID:
119 static int pyr_map[] = {0, 5, 1, 2, 3, 4};
120 for (size_t i = 0; i < num_to_get; i++) {
121 idata[2 * i + 1] = pyr_map[idata[2 * i + 1]];
122 }
123 break;
124
125 case Ioss::ElementShape::WEDGE:
126 #if 0
127 static int wed_map[] = {0, 1, 2, 3, 4, 5}; // Same
128 // Not needed -- maps 1 to 1
129 for (size_t i=0; i < num_to_get; i++) {
130 idata[2*i+1] = wed_map[idata[2*i+1]];
131 }
132 #endif
133 break;
134 default:;
135 }
136 }
137
138 static void map_ioss_face_to_cgns(const Ioss::ElementTopology *parent_topo, size_t num_to_get,
139 std::vector<cgsize_t> &data)
140 {
141 // The {topo}_map[] arrays map from CGNS face# to IOSS face#.
142 // See http://cgns.github.io/CGNS_docs_current/sids/conv.html#unstructgrid
143 // NOTE: '0' for first entry is to account for 1-based face numbering.
144
145 switch (parent_topo->shape()) {
146 case Ioss::ElementShape::HEX:
147 static int hex_map[] = {0, 2, 3, 4, 5, 1, 6};
148 for (size_t i = 0; i < num_to_get; i++) {
149 data[num_to_get * 2 + i] = hex_map[data[num_to_get * 2 + i]];
150 }
151 break;
152
153 case Ioss::ElementShape::TET:
154 static int tet_map[] = {0, 2, 3, 4, 1};
155 for (size_t i = 0; i < num_to_get; i++) {
156 data[num_to_get * 2 + i] = tet_map[data[num_to_get * 2 + i]];
157 }
158 break;
159
160 case Ioss::ElementShape::PYRAMID:
161 static int pyr_map[] = {0, 2, 3, 4, 5, 1};
162 for (size_t i = 0; i < num_to_get; i++) {
163 data[num_to_get * 2 + i] = pyr_map[data[num_to_get * 2 + i]];
164 }
165 break;
166
167 case Ioss::ElementShape::WEDGE:
168 #if 0
169 static int wed_map[] = {0, 1, 2, 3, 4, 5}; // Same
170 // Not needed -- maps 1 to 1
171 for (size_t i=0; i < num_to_get; i++) {
172 data[num_to_get * 2 + i] = wed_map[data[num_to_get * 2 + i]];
173 }
174 #endif
175 break;
176 default:;
177 }
178 }
179
180 static void write_flow_solution_metadata(int file_ptr, Ioss::Region *region, int state,
181 int *vertex_solution_index,
182 int *cell_center_solution_index, bool is_parallel_io);
183 static int find_solution_index(int cgns_file_ptr, int base, int zone, int step,
184 CG_GridLocation_t location);
185 static Ioss::MeshType check_mesh_type(int cgns_file_ptr);
186 static size_t common_write_meta_data(int file_ptr, const Ioss::Region &region,
187 std::vector<size_t> &zone_offset, bool is_parallel);
188 static size_t resolve_nodes(Ioss::Region &region, int my_processor, bool is_parallel);
189 static std::vector<std::vector<std::pair<size_t, size_t>>>
190 resolve_processor_shared_nodes(Ioss::Region &region, int my_processor);
191
192 static CG_ElementType_t map_topology_to_cgns(const std::string &name);
193 static std::string map_cgns_to_topology_type(CG_ElementType_t type);
194 static void add_sidesets(int cgns_file_ptr, Ioss::DatabaseIO *db);
195 static void add_structured_boundary_conditions(int cgns_file_ptr, Ioss::StructuredBlock *block,
196 bool is_parallel_io);
197 static void add_structured_boundary_conditions_fpp(int cgns_file_ptr,
198 Ioss::StructuredBlock *block);
199 static void add_structured_boundary_conditions_pio(int cgns_file_ptr,
200 Ioss::StructuredBlock *block);
201
202 static void finalize_database(int cgns_file_ptr, const std::vector<double> &timesteps,
203 Ioss::Region *region, int myProcessor, bool is_parallel_io);
204 static int get_step_times(int cgns_file_ptr, std::vector<double> &timesteps,
205 Ioss::Region *region, double timeScaleFactor, int myProcessor);
206 static void add_transient_variables(int cgns_file_ptr, const std::vector<double> &timesteps,
207 Ioss::Region *region, bool enable_field_recognition,
208 char suffix_separator, int myProcessor,
209 bool is_parallel_io);
210
211 static void set_line_decomposition(int cgns_file_ptr, const std::string &line_decomposition,
212 std::vector<Iocgns::StructuredZoneData *> &zones, int rank,
213 bool verbose);
214 static void decompose_model(std::vector<Iocgns::StructuredZoneData *> &zones, int proc_count,
215 int rank, double load_balance_threshold, bool verbose);
216 static size_t pre_split(std::vector<Iocgns::StructuredZoneData *> &zones, double avg_work,
217 double load_balance, int proc_rank, int proc_count, bool verbose);
218 static void assign_zones_to_procs(std::vector<Iocgns::StructuredZoneData *> &zones,
219 std::vector<size_t> &work_vector, bool verbose);
220 static void show_config();
221 };
222 } // namespace Iocgns
223
224 #endif
Ioss_CodeTypes.h
Iocgns::Utils::map_ioss_face_to_cgns
static void map_ioss_face_to_cgns(const Ioss::ElementTopology *parent_topo, size_t num_to_get, std::vector< cgsize_t > &data)
Definition: Iocgns_Utils.h:138
Iocgns::Utils::add_structured_boundary_conditions_fpp
static void add_structured_boundary_conditions_fpp(int cgns_file_ptr, Ioss::StructuredBlock *block)
Definition: Iocgns_Utils.C:1688
Ioss::ElementTopology
Represents an element topology.
Definition: Ioss_ElementTopology.h:72
Iocgns::Utils::map_topology_to_cgns
static CG_ElementType_t map_topology_to_cgns(const std::string &name)
Definition: Iocgns_Utils.C:1178
Ioss::DatabaseIO
An input or output Database.
Definition: Ioss_DatabaseIO.h:82
Iocgns::Utils::resolve_processor_shared_nodes
static std::vector< std::vector< std::pair< size_t, size_t > > > resolve_processor_shared_nodes(Ioss::Region &region, int my_processor)
Definition: Iocgns_Utils.C:1545
Iocgns::Utils::resolve_nodes
static size_t resolve_nodes(Ioss::Region &region, int my_processor, bool is_parallel)
Definition: Iocgns_Utils.C:1428
Ioss::ElementShape::PYRAMID
Iocgns::Utils::get_db_zone
static int get_db_zone(const Ioss::EntityBlock *block)
Definition: Iocgns_Utils.C:511
Iocgns::Utils::assign_zones_to_procs
static void assign_zones_to_procs(std::vector< Iocgns::StructuredZoneData * > &zones, std::vector< size_t > &work_vector, bool verbose)
Definition: Iocgns_Utils.C:2215
Iocgns
A namespace for the CGNS database format.
Definition: Iocgns_DatabaseIO.C:444
Iocgns::Utils::cgns_error
static void cgns_error(int cgnsid, const char *file, const char *function, int lineno, int processor)
Definition: Iocgns_Utils.C:386
Iocgns::Utils::~Utils
~Utils()=default
Iocgns::Utils::is_cell_field
static bool is_cell_field(const Ioss::Field &field)
Definition: Iocgns_Utils.C:536
Ioss::ElementShape::HEX
Iocgns::Utils::add_structured_boundary_conditions_pio
static void add_structured_boundary_conditions_pio(int cgns_file_ptr, Ioss::StructuredBlock *block)
Definition: Iocgns_Utils.C:1623
Ioss_DatabaseIO.h
Ioss_Region.h
Iocgns::Utils::index
static size_t index(const Ioss::Field &field)
Definition: Iocgns_Utils.C:522
Iocgns::Utils::update_db_zone_property
static void update_db_zone_property(int cgns_file_ptr, const Ioss::Region *region, int myProcessor, bool is_parallel, bool is_parallel_io)
Definition: Iocgns_Utils.C:449
Ioss::StructuredBlock
A structured zone – i,j,k.
Definition: Ioss_StructuredBlock.h:103
Iocgns::Utils::CG_CELL_CENTER_FIELD_ID
static const size_t CG_CELL_CENTER_FIELD_ID
Definition: Iocgns_Utils.h:81
Iocgns::Utils::show_config
static void show_config()
Definition: Iocgns_Utils.C:2496
Ioss_StructuredBlock.h
Ioss::EntityBlock
Base class for all 'block'-type grouping entities, which means all members of the block are similar o...
Definition: Ioss_EntityBlock.h:61
Iocgns::Utils::pre_split
static size_t pre_split(std::vector< Iocgns::StructuredZoneData * > &zones, double avg_work, double load_balance, int proc_rank, int proc_count, bool verbose)
Definition: Iocgns_Utils.C:2287
Iocgns::Utils::set_line_decomposition
static void set_line_decomposition(int cgns_file_ptr, const std::string &line_decomposition, std::vector< Iocgns::StructuredZoneData * > &zones, int rank, bool verbose)
Definition: Iocgns_Utils.C:1972
Ioss_Utils.h
Ioss::ElementShape::WEDGE
Ioss_SideSet.h
Iocgns::Utils::add_structured_boundary_conditions
static void add_structured_boundary_conditions(int cgns_file_ptr, Ioss::StructuredBlock *block, bool is_parallel_io)
Definition: Iocgns_Utils.C:1609
Iocgns::Utils::map_cgns_to_topology_type
static std::string map_cgns_to_topology_type(CG_ElementType_t type)
Definition: Iocgns_Utils.C:1147
Iocgns::Utils::Utils
Utils()=default
Iocgns::Utils::common_write_meta_data
static size_t common_write_meta_data(int file_ptr, const Ioss::Region &region, std::vector< size_t > &zone_offset, bool is_parallel)
Definition: Iocgns_Utils.C:818
Ioss::ElementTopology::shape
virtual ElementShape shape() const =0
Iocgns::Utils::check_mesh_type
static Ioss::MeshType check_mesh_type(int cgns_file_ptr)
Definition: Iocgns_Utils.C:408
Iocgns::Utils::map_cgns_face_to_ioss
static void map_cgns_face_to_ioss(const Ioss::ElementTopology *parent_topo, size_t num_to_get, INT *idata)
Definition: Iocgns_Utils.h:96
Iocgns::Utils::write_flow_solution_metadata
static void write_flow_solution_metadata(int file_ptr, Ioss::Region *region, int state, int *vertex_solution_index, int *cell_center_solution_index, bool is_parallel_io)
Definition: Iocgns_Utils.C:1251
INT
int INT
Definition: Ioss_StructuredBlock.h:53
anonymous_namespace{Iocgns_DecompositionData.C}::rank
int rank
Definition: Iocgns_DecompositionData.C:55
Iocgns::Utils::find_solution_index
static int find_solution_index(int cgns_file_ptr, int base, int zone, int step, CG_GridLocation_t location)
Definition: Iocgns_Utils.C:1301
anonymous_namespace{cth_pressure_map.C}::data
std::vector< char > data
Definition: cth_pressure_map.C:73
Ioss::ElementShape::TET
Ioss::Region
A grouping entity that contains other grouping entities.
Definition: Ioss_Region.h:98
Iocgns::Utils::decompose_model
static void decompose_model(std::vector< Iocgns::StructuredZoneData * > &zones, int proc_count, int rank, double load_balance_threshold, bool verbose)
Definition: Iocgns_Utils.C:2094
anonymous_namespace{io_info.C}::name
std::string name(Ioss::GroupingEntity *entity)
Definition: io_info.C:89
Iocgns::Utils::set_field_index
static void set_field_index(const Ioss::Field &field, size_t index, CG_GridLocation_t location)
Definition: Iocgns_Utils.C:524
Iocgns::Utils::CG_VERTEX_FIELD_ID
static const size_t CG_VERTEX_FIELD_ID
Definition: Iocgns_Utils.h:82
Ioss::Field
Holds metadata for bulk data associated with a GroupingEntity.
Definition: Ioss_Field.h:47
Ioss_SideBlock.h
Ioss_ElementTopology.h
Ioss::MeshType
MeshType
The mesh type – structured, unstructured, hybrid (future), or unknown.
Definition: Ioss_MeshType.h:39
Iocgns::Utils::finalize_database
static void finalize_database(int cgns_file_ptr, const std::vector< double > &timesteps, Ioss::Region *region, int myProcessor, bool is_parallel_io)
Definition: Iocgns_Utils.C:1759
Iocgns::Utils::get_step_times
static int get_step_times(int cgns_file_ptr, std::vector< double > &timesteps, Ioss::Region *region, double timeScaleFactor, int myProcessor)
Definition: Iocgns_Utils.C:1941
Iocgns::Utils::add_transient_variables
static void add_transient_variables(int cgns_file_ptr, const std::vector< double > &timesteps, Ioss::Region *region, bool enable_field_recognition, char suffix_separator, int myProcessor, bool is_parallel_io)
Definition: Iocgns_Utils.C:1850
Iocgns::Utils::add_sidesets
static void add_sidesets(int cgns_file_ptr, Ioss::DatabaseIO *db)
Definition: Iocgns_Utils.C:1363
Iocgns::Utils
Definition: Iocgns_Utils.h:75