Since commit df58dbb0 (VS: Add CMake input files to ZERO_CHECK,
2023-03-19, v3.27.0-rc1~157^2), projects that specify the same file both
as input to `configure_file` and as the `MAIN_DEPENDENCY` of a custom
command fail to configure.  Revert the change pending further
investigation.  Add a test case demonstrating the problem.

Issue: #24557
Fixes: #25149