1. O. Ruebel, A. Tritt, B. Dichter, T. Braun, N. Cain, N. Clack, T. Davidson, M. Dougherty, J. Fillion-Robin, N. Graddis, M. Grauer, J. Kiggins, L. Niu, D. Ozturk, W. Schroeder, I. Soltesz, F. Sommer, K. Svoboda, L. Ng, L. Frank, and K. Bouchard, "NWB:N 2.0: An Accessible Data Standard for Neurophysiology," Neuroscience, Jan. 2019. [URL]
  2. D. Chittajallu, N. Siekierski, S. Lee, S. Gerber, J. Beezley, D. Manthey, D. Gutman, and L. Cooper, "Vectorized persistent homology representations for characterizing glandular architecture in histology images," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2018. [URL]
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  4. C. Harris, P. O'Leary, M. Grauer, A. Chaudhary, C. Kotfila, and R. O'Bara, "Dynamic Provisioning and Execution of HPC Workflows Using Python," in Workshop on Python for High-Performance and Scientific Computing, 2016. [URL]
  5. D. Zukić, Z. Mullen, D. Byrd, P. Kinahan, and A. Enquobahrie, "A web-based platform for a high throughput calibration of PET scans," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2016. [URL]
  6. Z. Sun, J. Baumes, P. Tunison, M. Turek, and A. Hoogs, "Tattoo detection and localization using region-based deep learning," in Proceedings of the IEEE International Conference on Pattern Recognition, 2016. [URL]
  7. L. Hagen, O. Uzuner, C. Kotfila, T. Harrison, and D. Lamanna, "Understanding citizens' direct policy suggestions to the federal government: a natural language processing and topic modeling approach," in Hawaii International Conference on System Sciences, 2015. [URL]
  8. C. Dumas, D. LaManna, T. Harrison, S. Ravi, C. Kotfila, N. Gervais, L. Hagen, and F. Chen, "Examining political mobilization of online communities through e-petitioning behavior in We the People," Big Data & Society, vol. 2, no. 2, pp. 205395171559817, Dec. 2015. [URL]
  9. L. Hagen, T. Harrison, Ö. Uzuner, T. Fake, D. Lamanna, and C. Kotfila, "Introducing textual analysis tools for policy informatics: a case study of e-petitions," in Proceedings of the International Conference on Digital Government Research, 2015. [URL]
  10. S. Oh, M. Pandey, I. Kim, A. Hoogs, and J. Baumes, "Personalized Economy of Images in Social Forums: An Analysis on Supply, Consumption, and Saliency," in Proceedings of the IEEE International Conference on Pattern Recognition, 2014. Winner, Best Industry-Related Paper Award. [URL]
  11. M. Hanwell, A. Chaudhary, J. Baumes, and B. Geveci, "VTK's second Google Summer of Code," Kitware Source, no. 31, 2014.
  12. V. Revanna Shivaprabhu, A. Enquobahrie, Z. Mullen, and S. Aylward, "Accelerating ultrasound image analysis research through publically available database," in SPIE Medical Imaging, 2013. [URL]
  13. M. Grauer, P. Reynolds, M. Hoogstoel, F. Budin, M. Styner, and I. Oguz, "A midas plugin to enable construction of reproducible web-based image processing pipelines," Frontiers in Neuroinformatics, vol. 7, pp. 46, 2013. [URL]
  14. F. Budin, M. Hoogstoel, P. Reynolds, M. Grauer, S. O'Leary-Moore, and I. Oguz, "Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics," Frontiers in Neuroinformatics, vol. 7, pp. 15, 2013. [URL]
  15. B. Wylie, D. Dunlavy, W. Davis, and J. Baumes, "Using NoSQL databases for streaming network analysis," in Proceedings of the IEEE Symposium on Large Data Analysis and Visualization, 2012. [URL]
  16. A. Choudhury, B. Wang, P. Rosen, and V. Pascucci, "Topological analysis and visualization of cyclical behavior in memory reference traces," in IEEE Pacific Visualization Symposium, 2012. [URL]
  17. A. Choudhury, "Visualizing Program Memory Behavior Using Memory Reference Traces," Ph.D. dissertation, University of Utah, 2012.
  18. J. Shepherd, J. Baumes, and A. Chaudhary, "Geospatial and entity driven document visualization for non-proliferation analysis," in Geospatial and Entity Driven Document Visualization for Non-proliferation Analysis, 2011.
  19. A. Choudhury and P. Rosen, "Abstract visualization of runtime memory behavior," in International Workshop on Visualizing Software for Understanding and Analysis, 2011. [URL]
  20. A. Chaudhary and J. Baumes, "Is what you see what you get? Geospatial visualizations address scale and usability (Industry Trends)," GEO World, vol. 24, no. 5, May 2011.
  21. A. Choudhury, M. Steffen, J. Guilkey, and S. Parker, "Enhanced Understanding of Particle Simulations Through Deformation-Based Visualization," Computer Modeling in Engineering & Sciences, vol. 63, no. 2, pp. 117–136, Sep. 2010.
  22. B. Wylie and J. Baumes, "A unified toolkit for information and scientific visualization," in IS&T/SPIE Electronic Imaging, 2009. [URL]
  23. A. Choudhury and S. Parker, "Ray tracing NPR-style feature lines," in Proceedings of the International Symposium on Non-Photorealistic Animation and Rendering, 2009. [URL]
  24. A. Choudhury, K. Potter, and S. Parker, "Interactive Visualization for Memory Reference Traces," Computer Graphics Forum, vol. 27, no. 3, pp. 815-822, May 2008. [URL]
  25. B. Wylie, J. Baumes, and T. Shead, "G-Space: a linear time graph layout," in IS&T International Symposium on Electronic Imaging, 2008. [URL]
  26. A. Cedilnik, J. Baumes, L. Ibanez, S. Megason, and B. Wylie, "Integration of information and volume visualization for analysis of cell lineage and gene expression during embryogenesis," in IS&T International Symposium on Electronic Imaging, 2008. [URL]
  27. J. Baumes, H. Chen, M. Francisco, M. Goldberg, M. Magdon-Ismail, and W. Wallace, "ViSAGE: A Virtual laboratory for Simulation and Analysis of Social Group Evolution," ACM Transactions on Autonomous and Adaptive Systems, vol. 3, no. 3, pp. 1-35, Aug. 2008. [URL]
  28. P. Crossno, B. Wylie, A. Wilson, J. Greenfield, E. Stanton, T. Shead, L. Ice, K. Moreland, J. Baumes, and B. Geveci, "Intelligence Analysis Using Titan," in Proceedings of the IEEE Symposium on Visual Analytics Science and Technology, 2007. [URL]
  29. J. Baumes, M. Goldberg, M. Magdon-Ismail, and W. Wallace, "Identification of hidden groups in communications," in Handbooks in Information Systems, Volume 2: National Security. Elsevier, 2007, pp. 209-242.
  30. Bongshin Lee, C. Parr, C. Plaisant, B. Bederson, V. Veksler, W. Gray, and C. Kotfila, "TreePlus: interactive exploration of networks with enhanced tree layouts," IEEE Transactions on Visualization and Computer Graphics, vol. 12, no. 6, pp. 1414-1426, Nov. 2006. [URL]
  31. J. Baumes, "Algorithms for discovering hidden groups in communications," Ph.D. dissertation, Rensselaer Polytechnic Institute, 2006.
  32. J. Baumes, M. Goldberg, and M. Magdon-Ismail, "Efficient Identification of Overlapping Communities," in Intelligence and Security Informatics. Springer Berlin Heidelberg, 2005, pp. 27-36. [URL]
  33. J. Baumes, M. Goldberg, M. Magdon-Ismail, and W. Wallace, "Discovering Hidden Groups in Communication Networks," in Intelligence and Security Informatics. Springer Berlin Heidelberg, 2004, pp. 378-389. [URL]

Bibliography generated 2019-12-05-16:00:16 (3342)