GitLab

changes to file splitting, hyperslab not completely working yet. changes to Fortran to allow for polylines and releasing data after standard write

This reverts commit f386e633.

This reverts commit df13c70f.

Remove some warnings related to hidden functions.

shared_dynamic_cast was deprecated and removed from newer versions of boost
as dynamic_pointer_cast provides the same functionality. Check at
configure time whether shared_dynamic_cast exists and if not, then
provide our own implementation that uses dynamic_pointer_cast.

based on connectivity.

Previously, nodes added to a mesh in XdmfTopologyConverter were
compared using position to ensure nodes added to element boundaries
were not duplicated (added more than once). This failed in some
cases, especially for highly refined meshes, because of incorrect
floating point comparisons. Now, shared nodes are identified using
connectivity, ensuring that nodal addition should work in all cases,
even for highly refined meshes.

Get rid of some compiler warnings by removing unused argument names
from methods.

Graphs are stored in compressed sparse row format (XdmfSparseMatrix).
Added ability to partition graphs in XdmfPartitioner.
Added tests for new sparse matrix and graph classes.

Fix a bug in the reader that caused xincludes to not work properly when
nested. The xinclude needs to be evaluated in the local context rather
than the global context.

Replace with visitor pattern that avoids the need for catching the exception.
Update the HDF5Writer to use stringstreams for error message output for
concatenating strings and error codes.

Current chunking mechanism produces chunks too large for hdf5 to handle.
Reduce sizes of chunks for multi-dimensional hdf5 datasets.
Chunks for multi-dimensional hdf5 datasets have shape resembling overarching
dataset.
Add test for this to TestXdmfArrayWriteRead.

Since the reference element for spectral elements is by definition different
than a standard element, make these have different types in Xdmf.

Precision of values now tied to value type in getValuesString()
This precision is maintained when output to XML.

Add tests for I/O of strings (to hdf5 and xml).
Fix bug in XdmfExodusReader when reading grid centered data.
Add string I/O in python and add tests.

Modified writer to utilize hyperslabs to write in parallel to file.
Updated DSM to newest version (0.9.9).
Modified DSM test to write in parallel to DSM buffer.
Add test for new hyperslab writing mode.