/*=========================================================================

   Library: iMSTK

   Copyright (c) Kitware, Inc. & Center for Modeling, Simulation,
   & Imaging in Medicine, Rensselaer Polytechnic Institute.

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

      http://www.apache.org/licenses/LICENSE-2.0.txt

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.

   =========================================================================*/

#include "imstkGridBasedNeighborSearch.h"
#include "imstkParallelUtils.h"

namespace imstk
{
void
GridBasedNeighborSearch::setSearchRadius(const Real radius)
{
    m_SearchRadius    = radius;
    m_SearchRadiusSqr = radius * radius;
}

std::vector<std::vector<size_t>>
GridBasedNeighborSearch::getNeighbors(const VecDataArray<double, 3>& points)
{
    std::vector<std::vector<size_t>> result;
    getNeighbors(result, points, points);
    return result;
}

void
GridBasedNeighborSearch::getNeighbors(std::vector<std::vector<size_t>>& result, const VecDataArray<double, 3>& points)
{
    getNeighbors(result, points, points);
}

void
GridBasedNeighborSearch::getNeighbors(std::vector<std::vector<size_t>>& result, const VecDataArray<double, 3>& setA, const VecDataArray<double, 3>& setB)
{
    LOG_IF(FATAL, (std::abs(m_SearchRadius) < Real(1e-8))) << "Neighbor search radius is zero";

    // firstly compute the bounding box of points in setB
    Vec3r lowerCorner;
    Vec3r upperCorner;
    ParallelUtils::findAABB(setB, lowerCorner, upperCorner);

    // the upper corner need to be expanded a bit, to avoid round-off error during computation
    upperCorner += Vec3d(m_SearchRadius, m_SearchRadius, m_SearchRadius) * Real(0.1);

    // resize grid to fit the bounding box covering setB
    m_Grid.initialize(lowerCorner, upperCorner, m_SearchRadius);

    // clear all particle lists in each grid cell
    ParallelUtils::parallelFor(m_Grid.getAllCellData().size(),
        [&](const size_t cellIdx)
        {
            m_Grid.getCellData(cellIdx).particleIndices.resize(0);
        });

    // collect particle indices of points in setB into their corresponding cells
    ParallelUtils::parallelFor(setB.size(),
        [&](const size_t p)
        {
            auto& cellData = m_Grid.getCellData(setB[p]);
            cellData.lock.lock();
            cellData.particleIndices.push_back(p);
            cellData.lock.unlock();
        });

    // for each point in setA, collect setB neighbors within the search radius
    result.resize(setA.size());
    ParallelUtils::parallelFor(setA.size(),
        [&](const size_t p)
        {
            auto& pneighbors = result[p];

            // important: must clear the old result (if applicable)
            pneighbors.resize(0);

            const auto ppos    = setA[p];
            const auto cellIdx = m_Grid.template getCell3DIndices<int>(ppos);

            for (int k = -1; k <= 1; ++k)
            {
                int cellZ = cellIdx[2] + k;
                if (!m_Grid.template isValidCellIndex<2>(cellZ))
                {
                    continue;
                }
                for (int j = -1; j <= 1; ++j)
                {
                    int cellY = cellIdx[1] + j;
                    if (!m_Grid.template isValidCellIndex<1>(cellY))
                    {
                        continue;
                    }
                    for (int i = -1; i <= 1; ++i)
                    {
                        int cellX = cellIdx[0] + i;
                        if (!m_Grid.template isValidCellIndex<0>(cellX))
                        {
                            continue;
                        }

                        // get index q of point in setB
                        for (auto q : m_Grid.getCellData(cellX, cellY, cellZ).particleIndices)
                        {
                            const auto qpos  = setB[q];
                            const Vec3r diff = ppos - qpos;
                            const auto d2    = diff[0] * diff[0] + diff[1] * diff[1] + diff[2] * diff[2];
                            if (d2 < m_SearchRadiusSqr)
                            {
                                pneighbors.push_back(q);
                            }
                        }
                    }
                }
            }
    });
}
} // end namespace imstk
