/*=========================================================================

  Program:   Visualization Toolkit
  Module:    vtkNewickTreeReader.h

  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
  All rights reserved.
  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.

=========================================================================*/
// .NAME vtkNewickTreeReader - read vtkTree from Newick formatted file
// .SECTION Description
// vtkNewickTreeReader is a source object that reads Newick tree format
// files.
// The output of this reader is a single vtkTree data object.
// The superclass of this class, vtkDataReader, provides many methods for
// controlling the reading of the data file, see vtkDataReader for more
// information.
// .SECTION Thanks
// This class is adapted from code originally written by Yu-Wei Wu.
// .SECTION See Also
// vtkTree vtkDataReader

#ifndef vtkNewickTreeReader_h
#define vtkNewickTreeReader_h

#include "vtkIOInfovisModule.h" // For export macro
#include "vtkDataReader.h"

class vtkDoubleArray;
class vtkMutableDirectedGraph;
class vtkStringArray;
class vtkTree;

class VTKIOINFOVIS_EXPORT vtkNewickTreeReader : public vtkDataReader
{
public:
  static vtkNewickTreeReader *New();
  vtkTypeMacro(vtkNewickTreeReader,vtkDataReader);
  void PrintSelf(ostream& os, vtkIndent indent);

  // Description:
  // Get the output of this reader.
  vtkTree *GetOutput();
  vtkTree *GetOutput(int idx);
  void SetOutput(vtkTree *output);
  int ReadNewickTree(const char * buffer, vtkTree & tree);

protected:
  vtkNewickTreeReader();
  ~vtkNewickTreeReader();

  virtual int RequestData(vtkInformation *, vtkInformationVector **,
                          vtkInformationVector *);

  // Since the Outputs[0] has the same UpdateExtent format
  // as the generic DataObject we can copy the UpdateExtent
  // as a default behavior.
  virtual int RequestUpdateExtent(vtkInformation *, vtkInformationVector **,
                                  vtkInformationVector *);

  virtual int FillOutputPortInformation(int, vtkInformation*);
  void CountNodes(const char * buffer, vtkIdType *numNodes);
  vtkIdType BuildTree(char *buffer, vtkMutableDirectedGraph *g,
    vtkDoubleArray *weights, vtkStringArray *names, vtkIdType parent);
private:
  vtkNewickTreeReader(const vtkNewickTreeReader&);  // Not implemented.
  void operator=(const vtkNewickTreeReader&) VTK_DELETE_FUNCTION;
};

#endif
